Query 029712
Match_columns 189
No_of_seqs 162 out of 494
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.9 9.8E-23 3.3E-27 168.6 5.7 78 13-90 104-185 (185)
2 3by4_A OTU1, ubiquitin thioest 99.9 1.6E-22 5.6E-27 169.6 6.0 67 17-86 72-139 (212)
3 3phu_A RNA-directed RNA polyme 99.8 9.6E-21 3.3E-25 160.4 7.7 110 17-150 87-201 (219)
4 3phx_A RNA-directed RNA polyme 99.7 8.1E-18 2.8E-22 138.7 7.4 69 17-87 87-160 (185)
5 1tff_A Ubiquitin thiolesterase 99.4 1E-13 3.5E-18 117.7 6.4 70 17-87 159-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.4 4E-13 1.4E-17 113.8 7.1 65 17-85 162-233 (234)
7 4dhi_B Ubiquitin thioesterase 99.2 3.9E-11 1.3E-15 105.2 6.6 72 17-90 197-276 (284)
8 4ddg_A Ubiquitin-conjugating e 98.9 1.7E-09 5.8E-14 97.5 5.5 65 17-85 327-398 (399)
9 3zrh_A Ubiquitin thioesterase 88.2 0.74 2.5E-05 42.6 6.0 55 33-88 280-350 (454)
10 3dkb_A Tumor necrosis factor, 82.1 1.6 5.3E-05 39.8 4.9 55 33-88 213-284 (390)
11 2dlr_A RGS10, regulator of G-p 35.4 22 0.00075 26.6 2.5 41 137-177 104-146 (149)
12 2fo1_D Protein LAG-3; beta-bar 26.5 99 0.0034 22.1 4.5 64 114-181 15-84 (85)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.86 E-value=9.8e-23 Score=168.63 Aligned_cols=78 Identities=44% Similarity=0.865 Sum_probs=54.9
Q ss_pred CCccc---HHHHHhhcC-CCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccCCC
Q 029712 13 SHSFV---VKRFVLTSW-MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPR 88 (189)
Q Consensus 13 f~~~~---fdeYc~~i~-d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~ 88 (189)
|.+|+ |++||++++ +++|||++||+|||++|++||+||+.+++|++++.+......++|+|+||+++|||||++|.
T Consensus 104 f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 104 FSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp HTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred HHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 55554 899999655 57999999999999999999999999988998886544456789999999999999999998
Q ss_pred CC
Q 029712 89 RM 90 (189)
Q Consensus 89 ~~ 90 (189)
++
T Consensus 184 ~~ 185 (185)
T 3pfy_A 184 KA 185 (185)
T ss_dssp --
T ss_pred CC
Confidence 64
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.86 E-value=1.6e-22 Score=169.62 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=59.3
Q ss_pred cHHHHHhhcC-CCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccC
Q 029712 17 VVKRFVLTSW-MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD 86 (189)
Q Consensus 17 ~fdeYc~~i~-d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~ 86 (189)
.|++||++++ +++|||||||+|||++|++||+||+..+.++.+|+++. ..++|+|+|| |+|||||+.
T Consensus 72 ~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 72 PNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp CHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred CHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence 3899999665 57999999999999999999999999877788887664 5779999999 999999985
No 3
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.82 E-value=9.6e-21 Score=160.42 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=71.6
Q ss_pred cHHHHHhh-cCCCCCCCHHHHHHHHHhhCCCEEEEecCCC----ceEEecCCCCCCCCcEEEEEcCCCCCccccCCCCCC
Q 029712 17 VVKRFVLT-SWMQVYGNNVEIQALCEMYNRPIHIYSYTTE----PINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMT 91 (189)
Q Consensus 17 ~fdeYc~~-i~d~~WGG~IELqALSe~y~~~I~Vy~~~~~----~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~~~~ 91 (189)
.|++||++ .++++|||++||+|||++|+++|+||+.+.+ .+..|+++. ..++|+|+|++|+|||||+...+.+
T Consensus 87 ~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~ 164 (219)
T 3phu_A 87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFE 164 (219)
T ss_dssp CHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTC
T ss_pred CHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCC
Confidence 48999995 5567999999999999999999999998776 344565443 3689999999889999999533321
Q ss_pred cccCCCCCCCCCCchhHHHHHHHHHHhhHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 029712 92 VGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVME 150 (189)
Q Consensus 92 ig~glg~~~~~p~~~dk~~~~~a~~~se~~~ie~a~l~dk~~~tD~e~t~~~ie~~v~~ 150 (189)
-+ +. +...++|+.|+.|+...||||.|.++.+-..|-
T Consensus 165 ~~----------~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (219)
T 3phu_A 165 TD----------TR------------EALSLMDRVIAVDQLTSSSSDELQDYEDLALAL 201 (219)
T ss_dssp CS----------CC------------CCCCHHHHHHHHHHHHC----------------
T ss_pred CC----------CC------------cchhHHHHHHHHHHHHhccHHhhhhHHHHHHHh
Confidence 11 11 123357888999999999999998887765543
No 4
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.72 E-value=8.1e-18 Score=138.74 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=55.9
Q ss_pred cHHHHHhhc-CCCCCCCHHHHHHHHHhhCCCEEEEecCCCc----eEEecCCCCCCCCcEEEEEcCCCCCccccCC
Q 029712 17 VVKRFVLTS-WMQVYGNNVEIQALCEMYNRPIHIYSYTTEP----INIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87 (189)
Q Consensus 17 ~fdeYc~~i-~d~~WGG~IELqALSe~y~~~I~Vy~~~~~~----i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p 87 (189)
.|++||+++ ++++|||++||+|||++|+++|+||+.+.+. +..|+++. ..++|+|+|++|+|||||+..
T Consensus 87 ~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~ 160 (185)
T 3phx_A 87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRIL 160 (185)
T ss_dssp CHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceEC
Confidence 489999954 5579999999999999999999999986544 55665443 368999999988999999843
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.44 E-value=1e-13 Score=117.67 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=51.7
Q ss_pred cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCC-CCCCcEEEEEcCCCCCccccCC
Q 029712 17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYN-TDNPPIRLSYHHGNHYNSLVDP 87 (189)
Q Consensus 17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~-~~~~~I~LsYh~G~HYNSV~~p 87 (189)
.|++||+ .++. ++|||||||+|||+++++||+|++.++.+-.+-...+. ...+.|+|+|+.| |||++++.
T Consensus 159 ~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~ 231 (234)
T 1tff_A 159 DIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAA 231 (234)
T ss_dssp CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEEC
T ss_pred CHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccC
Confidence 5999999 6775 59999999999999999999999987765111111121 2467899999955 99999843
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.39 E-value=4e-13 Score=113.82 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=52.3
Q ss_pred cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCc---eE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712 17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEP---IN--IFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (189)
Q Consensus 17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~---i~--if~e~~~~~~~~I~LsYh~G~HYNSV~ 85 (189)
.+++||+ .++. ++||||+||+|||++|++||+|++.+..+ ++ .|.+ ...++|+|+|+.| |||+++
T Consensus 162 ~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~---~~~p~I~LlY~pg-HYdiLy 233 (234)
T 2zfy_A 162 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE---GSEPKVYLLYRPG-HYDILY 233 (234)
T ss_dssp CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST---TCCCSEEEEEETT-EEEEEE
T ss_pred CHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC---CCCCeEEEEECCC-CcccCC
Confidence 4899998 4775 69999999999999999999999987653 32 3422 2467899999966 999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.15 E-value=3.9e-11 Score=105.19 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=53.9
Q ss_pred cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCc---e--EE-ecCCCCCCCCcEEEEEcCCCCCccccCCC
Q 029712 17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEP---I--NI-FHGSYNTDNPPIRLSYHHGNHYNSLVDPR 88 (189)
Q Consensus 17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~---i--~i-f~e~~~~~~~~I~LsYh~G~HYNSV~~p~ 88 (189)
.+++||+ +++. ++|||||||+|||++|++||.|...+..+ + .+ |.++.....+.|+|.|. +.|||-|+ |.
T Consensus 197 ~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYr-pgHYDILY-~~ 274 (284)
T 4dhi_B 197 TVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYR-PGHYDVIY-KK 274 (284)
T ss_dssp CHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEE-TTEEEEEE-EC
T ss_pred CHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeec-CCCccccc-cC
Confidence 3899999 7887 59999999999999999999999886421 1 12 42222223478999997 67999998 44
Q ss_pred CC
Q 029712 89 RM 90 (189)
Q Consensus 89 ~~ 90 (189)
.|
T Consensus 275 ~p 276 (284)
T 4dhi_B 275 DS 276 (284)
T ss_dssp C-
T ss_pred CC
Confidence 33
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.86 E-value=1.7e-09 Score=97.54 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=51.3
Q ss_pred cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCC---ceE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712 17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTE---PIN--IFHGSYNTDNPPIRLSYHHGNHYNSLV 85 (189)
Q Consensus 17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~---~i~--if~e~~~~~~~~I~LsYh~G~HYNSV~ 85 (189)
.+++||+ .++. ++||||+||+|||++|+++|.|+..+.. .++ .+ ++ ...+.|+|.|..| |||.++
T Consensus 327 ~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~-~~--~~~~~I~LLYrPg-HYDiLY 398 (399)
T 4ddg_A 327 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIF-PE--GSEPKVYLLYRPG-HYDILY 398 (399)
T ss_dssp CHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEET-TT--TCCCCCEEEEETB-EEEEEE
T ss_pred CHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeC-CC--CCCCEEEEEEcCC-ccccCC
Confidence 3899999 7887 5999999999999999999999876542 222 23 22 2478899999755 999886
No 9
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=88.24 E-value=0.74 Score=42.58 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCEEEEecCC---------CceE---EecCCCC----CCCCcEEEEEcCCCCCccccCCC
Q 029712 33 NVEIQALCEMYNRPIHIYSYTT---------EPIN---IFHGSYN----TDNPPIRLSYHHGNHYNSLVDPR 88 (189)
Q Consensus 33 ~IELqALSe~y~~~I~Vy~~~~---------~~i~---if~e~~~----~~~~~I~LsYh~G~HYNSV~~p~ 88 (189)
++=+-+||++++|||.||.... .|+. ||.+-.- =.+.||.|.|.+| ||-+++...
T Consensus 280 eiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HFsaLV~~~ 350 (454)
T 3zrh_A 280 QTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HFSALVAME 350 (454)
T ss_dssp HHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EEEEEEEBC
T ss_pred HHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ceeeeeecc
Confidence 6778899999999999998632 1222 2211100 1357999999965 999998544
No 10
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=82.06 E-value=1.6 Score=39.77 Aligned_cols=55 Identities=29% Similarity=0.536 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCEEEEecC-------CC---ceE---EecCC----CCCCCCcEEEEEcCCCCCccccCCC
Q 029712 33 NVEIQALCEMYNRPIHIYSYT-------TE---PIN---IFHGS----YNTDNPPIRLSYHHGNHYNSLVDPR 88 (189)
Q Consensus 33 ~IELqALSe~y~~~I~Vy~~~-------~~---~i~---if~e~----~~~~~~~I~LsYh~G~HYNSV~~p~ 88 (189)
++=+-+||++++|||.||... ++ |+. ||-+- ..=.+.||.|.|.+ .||.+++...
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me 284 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLK 284 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBC
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-Cceeeeeecc
Confidence 777899999999999999632 11 221 22111 01136799999996 6999999654
No 11
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.43 E-value=22 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhcC--CCCCCCCCCC
Q 029712 137 LELTEKEIECMVMEVSRAEYLAGDNLKQQLG--HKESSTSGAE 177 (189)
Q Consensus 137 ~e~t~~~ie~~v~~~s~~~~l~~~~~~~~~~--~~~~s~~~~~ 177 (189)
++..+.+|...+...++-.||+...++.-.. .+++|+|+|.
T Consensus 104 Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~~~~~~~~~ 146 (149)
T 2dlr_A 104 FQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEEEEDLPSGP 146 (149)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHSHHHHHHHHHHSCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHChHHHHhcCHHHHHHHHhhcccccCCCCC
Confidence 4566777888877888888888776664332 2334444443
No 12
>2fo1_D Protein LAG-3; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: a.137.14.1
Probab=26.46 E-value=99 Score=22.10 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHHhccccccchHHHHHHH---HHHHHHHHHHHHhccchhh---hhcCCCCCCCCCCCCCCC
Q 029712 114 AIKAQQDQQIDNALLAEGRFYSDLELTEKEI---ECMVMEVSRAEYLAGDNLK---QQLGHKESSTSGAEPSSS 181 (189)
Q Consensus 114 a~~~se~~~ie~a~l~dk~~~tD~e~t~~~i---e~~v~~~s~~~~l~~~~~~---~~~~~~~~s~~~~~~~~~ 181 (189)
+|..-++.+-.+.-+ .+-.++.+-.+. .+.|...-+-.|-+|.|+| ++.+..+-+.|.+.|+||
T Consensus 15 ~f~~GeE~hRqrS~~----A~eky~k~rpe~ia~QRAVTahLfhRyTEDEERKR~EqQKNKEAMnAS~aapts~ 84 (85)
T 2fo1_D 15 AFHSGEELHRQRSEL----ARANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVEQQKNKEAMNASTSAPTSS 84 (85)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHSHHHHHHHHHHHHHHTHHHHHHHHHHHHHCC-----------------
T ss_pred HHhhhHHHHHHHHHH----HHHHHHhhhHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccccCCCCC
Confidence 666655554333222 233445554433 2556666777888888866 455666677777777776
Done!