Query 029712
Match_columns 189
No_of_seqs 162 out of 494
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 03:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tffa_ d.3.1.11 (A:) Ubiquiti 99.2 5.1E-12 3.7E-16 103.7 7.5 70 17-87 153-225 (228)
2 d1p9ya_ d.241.2.1 (A:) Trigger 29.5 28 0.002 23.7 4.0 23 94-116 37-59 (117)
3 d1t11a2 d.241.2.1 (A:1-129) Tr 25.7 34 0.0025 23.6 4.0 22 94-115 37-58 (129)
4 d1z41a1 c.1.4.1 (A:2-338) NADP 24.3 28 0.0021 27.8 3.7 37 13-49 165-213 (337)
5 d1djqa1 c.1.4.1 (A:1-340) Trim 16.2 45 0.0033 26.4 3.1 35 14-48 172-218 (340)
6 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 13.5 32 0.0023 27.3 1.5 36 14-49 164-211 (330)
7 d1u0la2 c.37.1.8 (A:69-293) Pr 12.7 68 0.005 24.4 3.2 22 2-23 14-35 (225)
8 d1q45a_ c.1.4.1 (A:) 12-oxophy 12.3 37 0.0027 27.3 1.5 39 13-51 181-231 (380)
9 d1vyra_ c.1.4.1 (A:) Pentaeryt 12.3 37 0.0027 27.3 1.5 33 14-46 183-227 (363)
10 d1s4ka_ a.35.1.6 (A:) Putative 12.0 44 0.0032 23.8 1.6 16 32-47 4-19 (120)
No 1
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.24 E-value=5.1e-12 Score=103.74 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=51.2
Q ss_pred cHHHHHhh-cCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEec-CCCCCCCCcEEEEEcCCCCCccccCC
Q 029712 17 VVKRFVLT-SWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFH-GSYNTDNPPIRLSYHHGNHYNSLVDP 87 (189)
Q Consensus 17 ~fdeYc~~-i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~-e~~~~~~~~I~LsYh~G~HYNSV~~p 87 (189)
.+++||.+ +.. ++||||+||+|||++|+++|.|+..+..+..+.. .......++|+|+|. +.|||.|++.
T Consensus 153 ~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~Lly~-pgHYdiLY~~ 225 (228)
T d1tffa_ 153 DIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYK-TSHYNILYAA 225 (228)
T ss_dssp CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEE-TTEEEEEEEC
T ss_pred cHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCCCEEEEEeC-CCCcccCccC
Confidence 47899984 665 7999999999999999999999988754433221 112245779999997 5699999844
No 2
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=29.51 E-value=28 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=16.5
Q ss_pred cCCCCCCCCCCchhHHHHHHHHH
Q 029712 94 AGLGFSCLRGTNVDKDQVKAAIK 116 (189)
Q Consensus 94 ~glg~~~~~p~~~dk~~~~~a~~ 116 (189)
...-+||||||-+-.+.+++-+.
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yg 59 (117)
T d1p9ya_ 37 KKVRIDGLRKGKVPMNIVAQRYG 59 (117)
T ss_dssp TTCCCTTSCTTCSCHHHHHHHHH
T ss_pred hcCCCCCcCCCCccHHHHHHHHh
Confidence 34568999999999885554443
No 3
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=25.70 E-value=34 Score=23.57 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=15.5
Q ss_pred cCCCCCCCCCCchhHHHHHHHH
Q 029712 94 AGLGFSCLRGTNVDKDQVKAAI 115 (189)
Q Consensus 94 ~glg~~~~~p~~~dk~~~~~a~ 115 (189)
.-.-+||||||-+-...+++-+
T Consensus 37 k~~~ipGFRkGKvP~~ii~k~~ 58 (129)
T d1t11a2 37 KNRRFDGFRKGKVPMKMVAKMY 58 (129)
T ss_dssp TTCCCTTSCSSCCCHHHHHHHH
T ss_pred HhCCCCCCCCCCCcHHHHHHHh
Confidence 3456899999998887554333
No 4
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}
Probab=24.34 E-value=28 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.592 Sum_probs=27.3
Q ss_pred CCcccHHHHHh---hcCCCCCCCHHH---------HHHHHHhhCCCEEE
Q 029712 13 SHSFVVKRFVL---TSWMQVYGNNVE---------IQALCEMYNRPIHI 49 (189)
Q Consensus 13 f~~~~fdeYc~---~i~d~~WGG~IE---------LqALSe~y~~~I~V 49 (189)
.+.|.++.++. ..|+..|||.+| +.|+-+..+.|+.|
T Consensus 165 ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~v 213 (337)
T d1z41a1 165 AHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFV 213 (337)
T ss_dssp CTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEE
T ss_pred cCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceE
Confidence 35678899987 345669999988 55666777777765
No 5
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=16.22 E-value=45 Score=26.37 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=25.3
Q ss_pred CcccHHHHHhh---cCCCCCCCHHH---------HHHHHHhhCCCEE
Q 029712 14 HSFVVKRFVLT---SWMQVYGNNVE---------IQALCEMYNRPIH 48 (189)
Q Consensus 14 ~~~~fdeYc~~---i~d~~WGG~IE---------LqALSe~y~~~I~ 48 (189)
+.|.+..++.. .|+..|||.+| +.|+-+..+.++.
T Consensus 172 hGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~ 218 (340)
T d1djqa1 172 HSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCA 218 (340)
T ss_dssp TTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSE
T ss_pred ccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhh
Confidence 56788888873 44569999999 5677777766543
No 6
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.55 E-value=32 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=25.7
Q ss_pred CcccHHHHHh---hcCCCCCCCHHH---------HHHHHHhhCCCEEE
Q 029712 14 HSFVVKRFVL---TSWMQVYGNNVE---------IQALCEMYNRPIHI 49 (189)
Q Consensus 14 ~~~~fdeYc~---~i~d~~WGG~IE---------LqALSe~y~~~I~V 49 (189)
+.|.++.++. ..|+..|||.+| +.|+-+..+.++.|
T Consensus 164 hGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v 211 (330)
T d1ps9a1 164 EGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFII 211 (330)
T ss_dssp BTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred hHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCcee
Confidence 5678899987 356679999998 44666777665543
No 7
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.67 E-value=68 Score=24.44 Aligned_cols=22 Identities=9% Similarity=0.502 Sum_probs=18.3
Q ss_pred ceeeeccccCCCCcccHHHHHh
Q 029712 2 LLFSFSVCNCDSHSFVVKRFVL 23 (189)
Q Consensus 2 ~~~~~~~~n~Df~~~~fdeYc~ 23 (189)
+++.+|+-+|||....+|+|+-
T Consensus 14 vliV~s~~~P~~~~~~ldR~Lv 35 (225)
T d1u0la2 14 VILVVTVKMPETSTYIIDKFLV 35 (225)
T ss_dssp EEEEECSSTTCCCHHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHH
Confidence 4566788899999999999975
No 8
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}
Probab=12.29 E-value=37 Score=27.30 Aligned_cols=39 Identities=10% Similarity=0.338 Sum_probs=26.2
Q ss_pred CCcccHHHHHh---hcCCCCCCCHHH---------HHHHHHhhCCCEEEEe
Q 029712 13 SHSFVVKRFVL---TSWMQVYGNNVE---------IQALCEMYNRPIHIYS 51 (189)
Q Consensus 13 f~~~~fdeYc~---~i~d~~WGG~IE---------LqALSe~y~~~I~Vy~ 51 (189)
.|.|.+..++. ..|+..|||.+| +.|+-+..+....++.
T Consensus 181 ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~ 231 (380)
T d1q45a_ 181 AHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVR 231 (380)
T ss_dssp CTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred chhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEE
Confidence 36788899997 345669999887 4555666665544443
No 9
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}
Probab=12.25 E-value=37 Score=27.31 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=23.1
Q ss_pred CcccHHHHHh---hcCCCCCCCHHH---------HHHHHHhhCCC
Q 029712 14 HSFVVKRFVL---TSWMQVYGNNVE---------IQALCEMYNRP 46 (189)
Q Consensus 14 ~~~~fdeYc~---~i~d~~WGG~IE---------LqALSe~y~~~ 46 (189)
|.|.++.++. ..|+..|||.+| +.|+-+..+..
T Consensus 183 hGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d 227 (363)
T d1vyra_ 183 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD 227 (363)
T ss_dssp TTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG
T ss_pred CceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCC
Confidence 5778899987 345569999999 34555555544
No 10
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=11.95 E-value=44 Score=23.84 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=13.6
Q ss_pred CHHHHHHHHHhhCCCE
Q 029712 32 NNVEIQALCEMYNRPI 47 (189)
Q Consensus 32 G~IELqALSe~y~~~I 47 (189)
+++|||||-++|-..|
T Consensus 4 N~~ELQalR~if~mti 19 (120)
T d1s4ka_ 4 NALELQALRRIFDMTI 19 (120)
T ss_dssp CHHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHHHHHHhH
Confidence 5899999999998765
Done!