BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029713
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DC7|A Chain A, Crystal Structure Of Myoglobin Exposed To Excessive Sonicc
Imaging Laser Dose.
pdb|4DC8|A Chain A, Crystal Structure Of Myoglobin Unexposed To Excessive
Sonicc Imaging Laser Dose
Length = 152
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1HRM|A Chain A, The Proximal Ligand Variant His93tyr Of Horse Heart
Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1YMA|A Chain A, Structural Characterization Of Heme Ligation In The
His64-- >tyr Variant Of Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|3RJN|B Chain B, Horse Heart Myoglobin: D44kD60K MUTANT WITH ZINC (II) -
Deuteroporphyrin Dimethyl Ester
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|3RJ6|A Chain A, Crystal Structure Of Horse Heart Ferric Myoglobin;
K45eK63EK96E Mutant
pdb|3RJ6|B Chain B, Crystal Structure Of Horse Heart Ferric Myoglobin;
K45eK63EK96E Mutant
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|3HEN|A Chain A, Ferric Horse Heart Myoglobin; H64vV67R MUTANT
pdb|3HEO|A Chain A, Ferric Horse Heart Myoglobin; H64vV67R MUTANT, NITRITE
Modified
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|3HC9|A Chain A, Ferric Horse Heart Myoglobin; H64v Mutant
pdb|3HEP|A Chain A, Ferric Horse Heart Myoglobin; H64v Mutant, Nitrite
Modified
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1NZ3|A Chain A, K45e-K63e Variant Of Horse Heart Myoglobin
pdb|1NZ4|A Chain A, The Horse Heart Myoglobin Variant K45eK63E COMPLEXED WITH
Cadmium
pdb|1NZ5|A Chain A, The Horse Heart Myoglobin Variant K45eK63E COMPLEXED WITH
Manganese
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1BJE|A Chain A, H64t Variant Of Myoglobin (Horse Heart) Recombinant Wild-
Type Complexed With Azide
pdb|1HSY|A Chain A, Origin Of The Ph-Dependent Spectroscopic Properties Of
Pentacoordinate Metmyoglobin Variants
Length = 153
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1NZ2|A Chain A, K45e Variant Of Horse Heart Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1DWR|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With Co
pdb|1DWS|A Chain A, Photolyzed Carbonmonoxy Myoglobin (Horse Heart)
pdb|1DWT|A Chain A, Photorelaxed Horse Heart Myoglobin Co Complex
pdb|1GJN|A Chain A, Hydrogen Peroxide Derived Myoglobin Compound Ii At Ph 5.2
pdb|1NPF|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With Nitric
Oxide
pdb|1NPG|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With
Nitrosoethane
pdb|2FRF|A Chain A, Horse Heart Myoglobin, Nitrite Adduct, Crystal Soak
pdb|2FRI|X Chain X, Horse Heart Myoglobin, Nitrite Adduct, Co-crystallized
pdb|2FRJ|X Chain X, Nitrosyl Horse Heart Myoglobin, NitriteDITHIONITE METHOD
pdb|2FRK|X Chain X, Nitrosyl Horse Heart Myoglobin, Nitric Oxide Gas Method
pdb|2IN4|A Chain A, Crystal Structure Of Myoglobin With Charge Neutralized
Heme, Zndmb-Dme
pdb|2V1E|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 6.8
pdb|2V1F|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 8.7
pdb|2V1G|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 5.2
pdb|2V1H|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 5.2
pdb|2V1I|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 6.8
pdb|2V1J|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 8.7
pdb|2V1K|A Chain A, Crystal Structure Of Ferrous Deoxymyoglobin At Ph 6.8
pdb|1AZI|A Chain A, Myoglobin (Horse Heart) Recombinant Wild-Type Complexed
With Azide
pdb|1WLA|A Chain A, Myoglobin (horse Heart) Recombinant Wild-type
pdb|1YMB|A Chain A, High Resolution Study Of The Three-Dimensional Structure
Of Horse Heart Metmyoglobin
pdb|1YMC|A Chain A, Three-Dimensional Structure Of Cyanomet-Sulfmyoglobin C
pdb|2O58|X Chain X, Horse Heart Met Manganese Myoglobin
pdb|2O5B|X Chain X, Manganese Horse Heart Myoglobin, Reduced
pdb|2O5L|X Chain X, Manganese Horse Heart Myoglobin, Methanol Modified
pdb|2O5M|X Chain X, Manganese Horse Heart Myoglobin, Azide Modified
pdb|2O5O|X Chain X, Manganese Horse Heart Myoglobin, Nitrite Modified
pdb|2O5Q|X Chain X, Manganese Horse Heart Myoglobin, Nitric Oxide Modified
pdb|2O5S|X Chain X, Cobalt Horse Heart Myoglobin, Nitrite Modified
pdb|2O5T|X Chain X, Cobalt Horse Heart Myoglobin, Oxidized
pdb|2NSR|A Chain A, Nitromethane Modified Horse Heart Myoglobin
pdb|2NSS|A Chain A, Nitrobenzene Modified Horse Heart Myoglobin
pdb|2VLY|A Chain A, Crystal Structure Of Myoglobin Compound Iii (Radiation-
Induced)
pdb|2VLZ|A Chain A, Crystal Structure Of Peroxymyoglobin Generated By
Cryoradiolytic Reduction Of Myoglobin Compound Iii
pdb|2VM0|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii Generated After Annealing Of Peroxymyoglobin
pdb|3BA2|A Chain A, Cyanide Bound Chlorin Substituted Myoglobin
pdb|2VLX|A Chain A, Crystal Structure Of Peroxymyoglobin Generated By
Cryoradiolytic Reduction Of Myoglobin Compound Iii
pdb|3LR7|A Chain A, Ferric Horse Heart Myoglobin, Nitrite Adduct
pdb|3LR9|A Chain A, X-Ray Photogenerated Ferrous Horse Heart Myoglobin,
Nitrite Adduct
pdb|3VAU|A Chain A, Myoglobin Nitrite Structure: Nitriheme Modified
pdb|3VM9|A Chain A, Dimeric Horse Myoglobin
pdb|3VM9|B Chain B, Dimeric Horse Myoglobin
pdb|3V2V|A Chain A, Nitrite Bound Chlorin Substituted Myoglobin- Method 1
pdb|3V2Z|A Chain A, Nitrite Bound Chlorin Substituted Myoglobin- Method 2
Length = 153
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1RSE|A Chain A, Myoglobin (horse Heart) Mutant With Ser 92 Replaced By Asp
(s92d)
Length = 153
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1XCH|A Chain A, Myoglobin (Horse Heart) Mutant With Leu 104 Replaced By
Asn (L104n)
Length = 153
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ D I H +HSK GD G+ DA +++ L+ F D +A
Sbjct: 107 ISDAIIHVLHSKHPGDFGA--DAQGAMTKALELFRNDIAA 144
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 134 LHEEGVEIVNASFNVVEDTIFHTIHSKQI 162
L++ G+ +N S + ++DT+F +I+++ I
Sbjct: 115 LYDAGLRRINVSLDAIDDTLFQSINNRNI 143
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 134 LHEEGVEIVNASFNVVEDTIFHTIHSKQI 162
L++ G+ +N S + ++DT+F +I+++ I
Sbjct: 115 LYDAGLRRINVSLDAIDDTLFQSINNRNI 143
>pdb|1A0A|A Chain A, Phosphate System Positive Regulatory Protein Pho4DNA
Complex
pdb|1A0A|B Chain B, Phosphate System Positive Regulatory Protein Pho4DNA
Complex
Length = 63
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 9 RTDRKTIERNRRNQMKALYSTLNSIVP----HQRPMEATSLPDQLDEATKYIKRLQTN 62
R K E+ RRN++ L S++P Q A S ++ A +YI+ LQ N
Sbjct: 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLER 65
+ R +ER RR+ +K + +L VP + E S LD+AT+YI+ ++ +
Sbjct: 2 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKVHT 60
Query: 66 MKE 68
+++
Sbjct: 61 LQQ 63
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPH 36
+S+ +KT+ RN + L TLN+ PH
Sbjct: 628 TSKEHKKTVGHQFRNSLHLLMETLNATTPH 657
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 9 RTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIK 57
R +ER RR+ +K + +L VP + E S LD+AT+YI+
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQ 50
>pdb|1CP5|A Chain A, Recombinant Sperm Whale Myoglobin L104f Mutant (Met)
Length = 154
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 146 FNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
F + + I H +HS+ G+ G+ DA +++ L+ F +D +A
Sbjct: 105 FEFISEAIIHVLHSRHPGNFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
Length = 80
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIK 57
+ R +ER RR+ +K + +L VP E S LD+AT+YI+
Sbjct: 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVP-SLQGEKASRAQILDKATEYIQ 60
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 9 RTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIK 57
R +ER RR+ +K + +L VP + E S LD+AT+YI+
Sbjct: 2 RAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQ 49
>pdb|3SDN|A Chain A, Structure Of G65i Sperm Whale Myoglobin Mutant
Length = 154
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIK 57
+ R +ER RR+ +K + +L VP + E S LD+AT+YI+
Sbjct: 1 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQ 51
>pdb|4H07|A Chain A, Complex Of G65t Myoglobin With Phenol In Its Proximal
Cavity
pdb|4H0B|A Chain A, Complex Of G65t Myoglobin With Dmso In Its Distal Cavity
Length = 154
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|3A2G|A Chain A, Crystal Structure Of K102c-Myoglobin Conjugated With
Fluorescein
Length = 154
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1A6K|A Chain A, Aquomet-Myoglobin, Atomic Resolution
pdb|1A6M|A Chain A, Oxy-Myoglobin, Atomic Resolution
pdb|1A6N|A Chain A, Deoxy-Myoglobin, Atomic Resolution
Length = 151
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 107 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 144
>pdb|3O89|A Chain A, Crystal Structure Of Sperm Whale Myoglobin G65t
Length = 153
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 107 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 144
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPH 36
+S+ +KT+ RN + L TLN+ PH
Sbjct: 628 TSKEHKKTVGHQFRNSLHLLMETLNATTPH 657
>pdb|1UFP|A Chain A, Crystal Structure Of An Artificial
Metalloprotein:fe(Iii)(3, 3'-Me2-Salophen)APO-Wild Type
Myoglobin
pdb|2JHO|A Chain A, Cyanomet Sperm Whale Myoglobin At 1.4a Resolution
pdb|2EB8|A Chain A, Crystal Structure Of Cu(Ii)(Sal-Phe)APO-Myoglobin
pdb|2EB9|A Chain A, Crystal Structure Of Cu(ii)(sal-leu)/apo-myoglobin
pdb|2W6W|A Chain A, Crystal Structure Of Recombinant Sperm Whale Myoglobin
Under 1atm Of Xenon
pdb|3U3E|A Chain A, Complex Of Wild Type Myoglobin With Phenol In Its Proximal
Cavity
Length = 154
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|2W6Y|A Chain A, Crystal Structure Of Sperm Whale Myoglobin Mutant Yqr In
Complex With Xenon
Length = 154
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1IRC|A Chain A, Cysteine Rich Intestinal Protein
Length = 154
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1MCY|A Chain A, Sperm Whale Myoglobin (Mutant With Initiator Met And With
His 64 Replaced By Gln, Leu 29 Replaced By Phe
Length = 154
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1WVP|A Chain A, Structure Of Chemically Modified Myoglobin With Distal N-
Tetrazolyl-Histidine E7(64)
Length = 153
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 107 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 144
>pdb|1J3F|A Chain A, Crystal Structure Of An Artificial
Metalloprotein:cr(iii)(3, 3'-me2-salophen)/apo-a71g
Myoglobin
pdb|1UFJ|A Chain A, Crystal Structure Of An Artificial
Metalloprotein:fe(Iii)(3, 3'-Me2-Salophen)APO-A71g
Myoglobin
pdb|1V9Q|A Chain A, Crystal Structure Of An Artificial
Metalloprotein:mn(iii)(3, 3'-me2-salophen)/apo-a71g
Myoglobin
pdb|2EF2|A Chain A, Crystal Structure Of An Artificial
Metalloprotein:rh(Phebox- Ph)APO-A71g Myoglobin
Length = 154
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 108 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 145
>pdb|1BZ6|A Chain A, Atomic Resolution Crystal Structure Aquomet-Myoglobin From
Sperm Whale At Room Temperature
pdb|1BZP|A Chain A, Atomic Resolution Crystal Structure Analysis Of Native
Deoxy And Co Myoglobin From Sperm Whale At Room
Temperature
pdb|1BZR|A Chain A, Atomic Resolution Crystal Structure Analysis Of Native
Deoxy And Co Myoglobin From Sperm Whale At Room
Temperature
pdb|1EBC|A Chain A, Sperm Whale Met-Myoglobin:cyanide Complex
pdb|1DUK|A Chain A, Wild-Type Recombinant Sperm Whale Metaquomyoglobin
pdb|1F6H|A Chain A, Combined Rietveld And Stereochemical Restraint Refinement
Of A Protein
pdb|1JP6|A Chain A, Sperm Whale Met-Myoglobin (Room Temperature; Room
Pressure)
pdb|1JP8|A Chain A, Sperm Whale Met-Myoglobin (Room Temperature; High
Pressure)
pdb|1JP9|A Chain A, Sperm Whale Met-Myoglobin (Low Temperature; High Pressure)
pdb|1JPB|A Chain A, Sperm Whale Met-Myoglobin (Low Temperature; High Pressure)
pdb|1L2K|A Chain A, Neutron Structure Determination Of Sperm Whale
Met-Myoglobin At 1.5a Resolution.
pdb|1U7R|A Chain A, Crystal Structure Of Native Sperm Whale Myoglobin From Low
Ionic Strength Enviroment (form2 )
pdb|1U7S|A Chain A, Crystal Structure Of Native Sperm Whale Myoglobin From Low
Ionic Strength Enviroment (form 1)
pdb|2D6C|A Chain A, Crystal Structure Of Myoglobin Reconstituted With Iron
Porphycene
pdb|2D6C|B Chain B, Crystal Structure Of Myoglobin Reconstituted With Iron
Porphycene
pdb|104M|A Chain A, Sperm Whale Myoglobin N-Butyl Isocyanide At Ph 7.0
pdb|105M|A Chain A, Sperm Whale Myoglobin N-Butyl Isocyanide At Ph 9.0
pdb|1AJG|A Chain A, Carbonmonoxy Myoglobin At 40 K
pdb|1AJH|A Chain A, Photoproduct Of Carbonmonoxy Myoglobin At 40 K
pdb|1BVC|A Chain A, Structure Of A Biliverdin Apomyoglobin Complex (Form D) At
118 K
pdb|1BVD|A Chain A, Structure Of A Biliverdin Apomyoglobin Complex (Form B) At
98 K
pdb|1HJT|A Chain A, Sperm Whale Myoglobin (Ferrous, Nitric Oxide Bound)
pdb|1IOP|A Chain A, Incorporation Of A Hemin With The Shortest Acid
Side-Chains Into Myoglobin
pdb|1MBC|A Chain A, X-Ray Structure And Refinement Of Carbon-Monoxy (Fe Ii)-
Myoglobin At 1.5 Angstroms Resolution
pdb|1MBD|A Chain A, Neutron Diffraction Reveals Oxygen-Histidine Hydrogen Bond
In Oxymyoglobin
pdb|1MBI|A Chain A, X-Ray Crystal Structure Of The Ferric Sperm Whale
Myoglobin: Imidazole Complex At 2.0 Angstroms Resolution
pdb|1MBN|A Chain A, The Stereochemistry Of The Protein Myoglobin
pdb|1MBO|A Chain A, Structure And Refinement Of Oxymyoglobin At 1.6 Angstroms
Resolution
pdb|1SPE|A Chain A, Sperm Whale Native Co Myoglobin At Ph 4.0, Temp 4c
pdb|1SWM|A Chain A, X-Ray Crystal Structure Of The Ferric Sperm Whale
Myoglobin: Imidazole Complex At 2.0 Angstroms Resolution
pdb|1VXA|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXB|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXC|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXD|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXE|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXF|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXG|A Chain A, Native Sperm Whale Myoglobin
pdb|1VXH|A Chain A, Native Sperm Whale Myoglobin
pdb|1YOG|A Chain A, Cobalt Myoglobin (Deoxy)
pdb|1YOH|A Chain A, Cobalt Myoglobin (Met)
pdb|1YOI|A Chain A, Cobalt Myoglobin (Oxy)
pdb|2CMM|A Chain A, Structural Analysis Of The Myoglobin Reconstituted With
Iron Porphine
pdb|2EKT|A Chain A, Crystal Structure Of Myoglobin Reconstituted With
6-Methyl-6- Depropionatehemin
pdb|2EKU|A Chain A, Crystal Structure Of Myoglobin Reconstituted With
7-Methyl-7- Depropionatehemin
pdb|2MYA|A Chain A, High Resolution X-Ray Structures Of Myoglobin-And
Hemoglobin-Alkyl Isocyanide Complexes
pdb|2MYB|A Chain A, High Resolution X-Ray Structures Of Myoglobin-And
Hemoglobin-Alkyl Isocyanide Complexes
pdb|2MYC|A Chain A, High Resolution X-Ray Structures Of Myoglobin-And
Hemoglobin-Alkyl Isocyanide Complexes
pdb|2MYD|A Chain A, High Resolution X-ray Structures Of Myoglobin-and
Hemoglobin-alkyl Isocyanide Complexes
pdb|2MYE|A Chain A, High Resolution X-Ray Structures Of Myoglobin-And
Hemoglobin-Alkyl Isocyanide Complexes
pdb|4MBN|A Chain A, Refinement Of Myoglobin And Cytochrome C
pdb|5MBN|A Chain A, Refinement Of Myoglobin And Cytochrome C
pdb|1MYF|A Chain A, Solution Structure Of Carbonmonoxy Myoglobin Determined
From Nmr Distance And Chemical Shift Constraints
pdb|2Z6S|A Chain A, Crystal Structure Of The Oxy Myoglobin Free From X-ray-
Induced Photoreduction
pdb|2Z6T|A Chain A, Crystal Structure Of The Ferric Peroxo Myoglobin
pdb|2ZSN|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [300
Min]
pdb|2ZSO|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [450
Min]
pdb|2ZSP|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [300
Min]
pdb|2ZSQ|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [150
Min]
pdb|2ZSR|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [450
Min]
pdb|2ZSS|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [300
Min]
pdb|2ZST|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [450
Min]
pdb|2ZSX|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [600
Min]
pdb|2ZSY|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [750
Min]
pdb|2ZSZ|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [600
Min]
pdb|2ZT0|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [750
Min]
pdb|2ZT1|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [810
Min]
pdb|2ZT2|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [600
Min]
pdb|2ZT3|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [750
Min]
pdb|2ZT4|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [810
Min]
pdb|3E4N|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 40 K: Laser Off
pdb|3E55|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser Off
pdb|3E5I|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser Off
pdb|3E5O|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser Off
pdb|3ECL|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 40 K: Laser On
pdb|3ECX|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [30
Min]
pdb|3ECZ|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [30
Min]
pdb|3ED9|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [30
Min]
pdb|3EDA|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 100 K: Laser On [150
Min]
pdb|3EDB|A Chain A, Carbonmonoxy Sperm Whale Myoglobin At 120 K: Laser On [150
Min]
pdb|1CQ2|A Chain A, Neutron Struture Of Fully Deuterated Sperm Whale Myoglobin
At 2.0 Angstrom
Length = 153
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 107 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 144
>pdb|2MB5|A Chain A, Hydration In Protein Crystals. A Neutron Diffraction
Analysis Of Carbonmonoxymyoglobin
Length = 153
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 149 VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188
+ + I H +HS+ GD G+ DA +++ L+ F +D +A
Sbjct: 107 ISEAIIHVLHSRHPGDFGA--DAQGAMNKALELFRKDIAA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,476,910
Number of Sequences: 62578
Number of extensions: 142475
Number of successful extensions: 538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 50
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)