Query 029713
Match_columns 189
No_of_seqs 142 out of 1094
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.5E-13 3.2E-18 89.8 6.2 53 8-60 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 8E-14 1.7E-18 92.0 4.8 58 6-63 2-59 (60)
3 smart00353 HLH helix loop heli 99.4 1.8E-12 3.9E-17 83.7 6.6 52 13-64 1-52 (53)
4 KOG1318 Helix loop helix trans 98.9 3.3E-09 7.2E-14 94.3 7.4 60 7-66 232-292 (411)
5 KOG2483 Upstream transcription 98.6 2.7E-07 5.8E-12 76.9 8.1 71 4-74 55-125 (232)
6 KOG1319 bHLHZip transcription 98.5 2.1E-07 4.5E-12 74.6 6.7 66 8-73 62-131 (229)
7 KOG4029 Transcription factor H 98.3 5.4E-07 1.2E-11 74.9 4.5 63 6-68 107-170 (228)
8 PLN03217 transcription factor 98.2 3.6E-06 7.9E-11 59.3 5.9 56 20-75 19-77 (93)
9 KOG3561 Aryl-hydrocarbon recep 98.2 1.1E-06 2.3E-11 84.2 4.2 54 6-62 18-75 (803)
10 cd04927 ACT_ACR-like_2 Second 98.0 8.6E-05 1.9E-09 51.4 9.6 72 114-186 2-74 (76)
11 KOG4304 Transcriptional repres 98.0 4.3E-06 9.3E-11 70.6 2.8 58 7-64 31-93 (250)
12 KOG3960 Myogenic helix-loop-he 98.0 6.6E-05 1.4E-09 62.9 9.4 67 6-73 116-182 (284)
13 cd04896 ACT_ACR-like_3 ACT dom 98.0 0.00011 2.5E-09 51.0 9.1 68 115-183 3-72 (75)
14 cd04895 ACT_ACR_1 ACT domain-c 97.9 0.00018 4E-09 49.6 9.9 66 114-183 3-68 (72)
15 cd04897 ACT_ACR_3 ACT domain-c 97.9 0.00019 4E-09 49.9 9.7 67 114-184 3-73 (75)
16 cd04900 ACT_UUR-like_1 ACT dom 97.9 0.00026 5.6E-09 48.2 10.2 66 114-183 3-69 (73)
17 cd04928 ACT_TyrKc Uncharacteri 97.9 0.00034 7.4E-09 47.7 10.0 64 114-183 3-67 (68)
18 KOG0561 bHLH transcription fac 97.8 1.4E-05 3E-10 68.5 3.1 58 8-66 60-117 (373)
19 cd04925 ACT_ACR_2 ACT domain-c 97.6 0.001 2.2E-08 45.5 10.0 69 115-184 3-73 (74)
20 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.0019 4.1E-08 42.9 9.5 50 115-165 3-52 (70)
21 cd04926 ACT_ACR_4 C-terminal 97.4 0.003 6.6E-08 42.9 9.9 67 114-185 3-69 (72)
22 KOG2588 Predicted DNA-binding 97.2 0.0002 4.2E-09 69.4 2.7 66 6-74 274-340 (953)
23 KOG3898 Transcription factor N 96.8 0.00079 1.7E-08 57.1 2.3 58 6-63 70-127 (254)
24 cd04873 ACT_UUR-ACR-like ACT d 96.7 0.041 8.8E-07 36.0 9.6 50 114-164 2-51 (70)
25 PRK03381 PII uridylyl-transfer 96.6 0.02 4.3E-07 55.6 11.0 73 110-186 597-669 (774)
26 PF13740 ACT_6: ACT domain; PD 96.6 0.034 7.4E-07 38.1 9.2 66 112-184 2-67 (76)
27 PF01842 ACT: ACT domain; Int 96.5 0.034 7.5E-07 35.9 8.3 62 114-183 2-65 (66)
28 PRK00275 glnD PII uridylyl-tra 96.5 0.035 7.5E-07 54.8 11.5 80 102-185 802-887 (895)
29 cd04893 ACT_GcvR_1 ACT domains 96.4 0.066 1.4E-06 36.7 9.6 64 113-183 2-65 (77)
30 PRK00194 hypothetical protein; 96.3 0.034 7.4E-07 39.0 7.9 67 112-183 3-69 (90)
31 PRK05007 PII uridylyl-transfer 96.3 0.033 7.2E-07 54.9 10.4 70 112-185 808-880 (884)
32 KOG4447 Transcription factor T 96.1 0.0039 8.5E-08 48.7 2.4 55 8-63 78-132 (173)
33 cd04875 ACT_F4HF-DF N-terminal 96.1 0.081 1.8E-06 35.7 8.7 66 115-184 2-68 (74)
34 PRK05092 PII uridylyl-transfer 96.1 0.08 1.7E-06 52.4 12.0 84 102-186 831-917 (931)
35 cd04872 ACT_1ZPV ACT domain pr 96.1 0.049 1.1E-06 38.2 7.8 68 113-185 2-69 (88)
36 PRK04374 PII uridylyl-transfer 96.1 0.077 1.7E-06 52.3 11.6 79 102-184 784-867 (869)
37 TIGR01693 UTase_glnD [Protein- 96.0 0.069 1.5E-06 52.3 11.2 72 111-186 667-743 (850)
38 PRK03059 PII uridylyl-transfer 96.0 0.069 1.5E-06 52.5 11.0 70 111-183 785-854 (856)
39 PF13291 ACT_4: ACT domain; PD 95.9 0.065 1.4E-06 36.6 7.7 64 112-181 6-71 (80)
40 cd04869 ACT_GcvR_2 ACT domains 95.9 0.15 3.3E-06 34.6 9.5 65 115-185 2-72 (81)
41 PRK01759 glnD PII uridylyl-tra 95.8 0.11 2.4E-06 51.1 11.5 82 101-186 664-751 (854)
42 KOG4395 Transcription factor A 95.8 0.018 3.9E-07 48.5 5.2 56 8-63 174-229 (285)
43 PRK05007 PII uridylyl-transfer 95.8 0.11 2.5E-06 51.2 11.5 82 101-186 688-775 (884)
44 PRK03059 PII uridylyl-transfer 95.7 0.084 1.8E-06 51.9 10.2 84 102-186 666-752 (856)
45 PRK03381 PII uridylyl-transfer 95.6 0.14 2.9E-06 49.9 11.2 66 112-183 707-772 (774)
46 PRK01759 glnD PII uridylyl-tra 95.2 0.15 3.2E-06 50.2 10.1 67 112-182 783-852 (854)
47 PRK00275 glnD PII uridylyl-tra 95.2 0.2 4.3E-06 49.6 10.9 73 111-187 703-781 (895)
48 KOG3910 Helix loop helix trans 95.1 0.021 4.6E-07 52.3 3.6 57 7-66 525-585 (632)
49 cd04887 ACT_MalLac-Enz ACT_Mal 94.9 0.37 7.9E-06 32.0 8.5 62 115-182 2-64 (74)
50 cd04870 ACT_PSP_1 CT domains f 94.8 0.43 9.4E-06 32.3 8.7 64 115-184 2-65 (75)
51 PRK04374 PII uridylyl-transfer 94.8 0.27 5.9E-06 48.5 10.5 74 110-186 688-762 (869)
52 cd04886 ACT_ThrD-II-like C-ter 94.6 0.38 8.2E-06 31.1 8.0 59 117-181 3-66 (73)
53 cd04888 ACT_PheB-BS C-terminal 94.5 0.29 6.4E-06 32.6 7.3 64 114-182 2-66 (76)
54 PRK04435 hypothetical protein; 94.5 0.36 7.9E-06 37.5 8.6 69 109-182 66-135 (147)
55 PRK05092 PII uridylyl-transfer 94.4 0.52 1.1E-05 46.8 11.7 84 102-186 720-807 (931)
56 TIGR01693 UTase_glnD [Protein- 94.3 0.34 7.4E-06 47.5 10.0 53 112-165 779-831 (850)
57 COG2844 GlnD UTP:GlnB (protein 93.7 0.39 8.5E-06 46.8 8.9 80 101-184 778-862 (867)
58 cd04880 ACT_AAAH-PDT-like ACT 93.3 1 2.2E-05 30.2 8.2 58 123-182 9-67 (75)
59 cd04876 ACT_RelA-SpoT ACT dom 92.9 0.89 1.9E-05 28.1 7.2 60 116-181 2-62 (71)
60 PRK13011 formyltetrahydrofolat 92.5 1.3 2.7E-05 38.2 9.6 69 112-184 7-75 (286)
61 cd04905 ACT_CM-PDT C-terminal 92.0 2 4.4E-05 29.2 8.4 43 122-164 10-53 (80)
62 cd04881 ACT_HSDH-Hom ACT_HSDH_ 91.7 1.2 2.7E-05 29.0 6.9 63 113-181 1-65 (79)
63 PRK06027 purU formyltetrahydro 91.5 2.1 4.5E-05 36.9 9.7 68 112-184 6-75 (286)
64 PRK08577 hypothetical protein; 91.4 2.9 6.3E-05 31.7 9.5 66 112-182 56-123 (136)
65 cd04877 ACT_TyrR N-terminal AC 91.3 1.3 2.7E-05 29.8 6.7 59 115-182 3-61 (74)
66 KOG3560 Aryl-hydrocarbon recep 90.9 0.21 4.6E-06 46.5 3.1 37 18-57 35-75 (712)
67 cd04874 ACT_Af1403 N-terminal 90.8 2.6 5.7E-05 27.0 7.7 46 114-160 2-48 (72)
68 cd04894 ACT_ACR-like_1 ACT dom 90.4 2.8 6E-05 28.3 7.3 66 114-182 2-67 (69)
69 PF13710 ACT_5: ACT domain; PD 90.4 1.2 2.7E-05 29.4 5.8 54 124-183 3-58 (63)
70 cd04879 ACT_3PGDH-like ACT_3PG 89.7 3.6 7.8E-05 26.0 7.6 58 116-182 3-62 (71)
71 TIGR00655 PurU formyltetrahydr 89.2 4 8.7E-05 35.0 9.5 63 114-181 2-66 (280)
72 PRK00227 glnD PII uridylyl-tra 89.1 4.8 0.0001 39.0 10.8 71 112-186 546-616 (693)
73 KOG3558 Hypoxia-inducible fact 88.6 0.34 7.3E-06 46.3 2.6 46 9-57 47-96 (768)
74 COG2844 GlnD UTP:GlnB (protein 88.5 2.8 6E-05 41.2 8.7 79 105-187 677-759 (867)
75 cd04904 ACT_AAAH ACT domain of 87.9 3.8 8.2E-05 27.6 7.0 41 123-163 10-51 (74)
76 COG3830 ACT domain-containing 87.8 1.2 2.6E-05 32.0 4.5 65 113-182 4-68 (90)
77 PRK13010 purU formyltetrahydro 87.8 4 8.6E-05 35.3 8.6 69 112-184 9-79 (289)
78 cd04878 ACT_AHAS N-terminal AC 87.6 5.4 0.00012 25.3 7.9 60 115-181 3-64 (72)
79 cd02116 ACT ACT domains are co 87.0 4.2 9.1E-05 23.5 6.8 34 116-150 2-35 (60)
80 PRK07334 threonine dehydratase 86.7 5.2 0.00011 35.8 9.1 64 113-182 327-395 (403)
81 cd04903 ACT_LSD C-terminal ACT 86.7 6.1 0.00013 25.0 7.6 58 116-182 3-62 (71)
82 KOG3559 Transcriptional regula 86.6 0.71 1.5E-05 41.8 3.3 43 13-58 6-52 (598)
83 KOG4447 Transcription factor T 86.5 0.51 1.1E-05 37.1 2.1 54 6-60 19-73 (173)
84 cd04931 ACT_PAH ACT domain of 86.4 6.7 0.00014 27.9 7.8 66 114-183 16-82 (90)
85 cd04884 ACT_CBS C-terminal ACT 85.5 8.2 0.00018 25.4 7.5 55 123-182 9-66 (72)
86 cd04929 ACT_TPH ACT domain of 85.1 8.2 0.00018 26.3 7.4 43 122-164 9-52 (74)
87 COG4492 PheB ACT domain-contai 85.0 6.5 0.00014 30.4 7.5 65 113-182 73-138 (150)
88 cd04909 ACT_PDH-BS C-terminal 83.8 9.4 0.0002 24.7 7.2 35 114-149 3-37 (69)
89 cd04902 ACT_3PGDH-xct C-termin 83.5 5.8 0.00013 25.7 6.1 52 122-181 8-61 (73)
90 cd04889 ACT_PDH-BS-like C-term 83.3 7.7 0.00017 24.2 6.3 42 118-160 4-46 (56)
91 TIGR00119 acolac_sm acetolacta 82.0 11 0.00023 29.7 7.9 62 115-183 4-67 (157)
92 cd04883 ACT_AcuB C-terminal AC 81.8 12 0.00025 24.3 9.1 60 114-182 3-64 (72)
93 PRK11589 gcvR glycine cleavage 81.5 5.8 0.00013 32.2 6.4 65 112-183 8-72 (190)
94 PRK11895 ilvH acetolactate syn 80.6 13 0.00028 29.4 8.0 62 115-183 5-68 (161)
95 PF05088 Bac_GDH: Bacterial NA 79.7 15 0.00032 38.8 10.0 69 111-183 488-561 (1528)
96 cd04901 ACT_3PGDH C-terminal A 79.5 2.5 5.4E-05 27.4 3.1 53 121-181 7-59 (69)
97 PRK06737 acetolactate synthase 79.2 16 0.00034 25.3 7.1 62 115-183 5-68 (76)
98 cd04908 ACT_Bt0572_1 N-termina 79.2 15 0.00031 23.8 8.3 44 115-161 4-47 (66)
99 cd04882 ACT_Bt0572_2 C-termina 78.7 9.2 0.0002 24.1 5.6 50 123-182 9-60 (65)
100 cd04930 ACT_TH ACT domain of t 78.6 11 0.00025 28.0 6.7 42 123-164 51-93 (115)
101 PRK11589 gcvR glycine cleavage 73.9 31 0.00068 27.9 8.6 67 113-183 96-166 (190)
102 PRK10872 relA (p)ppGpp synthet 72.7 21 0.00045 35.0 8.4 74 103-182 652-732 (743)
103 TIGR00691 spoT_relA (p)ppGpp s 72.7 33 0.00071 33.2 9.8 74 103-182 596-675 (683)
104 PRK11092 bifunctional (p)ppGpp 72.5 32 0.00069 33.5 9.7 74 103-182 612-691 (702)
105 PRK13562 acetolactate synthase 70.3 27 0.00058 24.7 6.5 63 115-183 5-69 (84)
106 PF02120 Flg_hook: Flagellar h 69.6 25 0.00055 23.8 6.3 47 103-149 28-79 (85)
107 cd04898 ACT_ACR-like_4 ACT dom 69.0 17 0.00036 25.3 5.0 67 119-185 6-76 (77)
108 cd04868 ACT_AK-like ACT domain 68.1 23 0.0005 21.1 5.9 26 124-149 14-39 (60)
109 PRK11899 prephenate dehydratas 68.0 33 0.00072 29.4 7.9 56 122-182 203-259 (279)
110 CHL00100 ilvH acetohydroxyacid 66.8 41 0.00088 26.9 7.7 63 115-184 5-69 (174)
111 PRK11898 prephenate dehydratas 64.6 39 0.00085 28.9 7.7 47 118-164 202-249 (283)
112 PRK11152 ilvM acetolactate syn 63.8 45 0.00098 22.9 8.0 55 122-183 12-68 (76)
113 cd04922 ACT_AKi-HSDH-ThrA_2 AC 62.3 36 0.00079 21.3 6.2 34 115-148 4-39 (66)
114 PF14689 SPOB_a: Sensor_kinase 58.4 34 0.00074 22.3 5.0 43 15-67 15-57 (62)
115 cd04885 ACT_ThrD-I Tandem C-te 56.7 52 0.0011 21.4 6.8 54 123-182 8-62 (68)
116 PRK10622 pheA bifunctional cho 56.1 67 0.0014 28.9 8.0 56 122-182 306-362 (386)
117 PF05687 DUF822: Plant protein 54.3 16 0.00035 28.5 3.2 28 7-34 10-37 (150)
118 PRK08198 threonine dehydratase 52.9 1.2E+02 0.0026 27.0 9.1 64 112-181 327-395 (404)
119 COG3074 Uncharacterized protei 51.9 31 0.00067 23.7 3.9 26 49-74 13-38 (79)
120 KOG3582 Mlx interactors and re 50.3 4.7 0.0001 38.9 -0.3 65 6-70 649-715 (856)
121 PRK15385 magnesium transport p 50.2 1.3E+02 0.0029 25.1 8.3 66 112-180 142-210 (225)
122 COG0788 PurU Formyltetrahydrof 48.4 1.3E+02 0.0028 26.1 8.0 68 112-182 7-74 (287)
123 TIGR01127 ilvA_1Cterm threonin 46.7 1.8E+02 0.0039 25.5 9.2 64 113-182 306-374 (380)
124 PF06005 DUF904: Protein of un 45.5 50 0.0011 22.5 4.3 25 49-73 13-37 (72)
125 COG0077 PheA Prephenate dehydr 43.9 1.3E+02 0.0029 25.9 7.6 56 122-182 203-259 (279)
126 PRK06382 threonine dehydratase 43.8 1.7E+02 0.0036 26.2 8.6 64 113-182 331-399 (406)
127 PF02344 Myc-LZ: Myc leucine z 43.7 30 0.00065 20.0 2.4 18 15-32 12-29 (32)
128 PRK08178 acetolactate synthase 43.6 1.2E+02 0.0027 21.9 7.6 63 113-183 9-73 (96)
129 COG4747 ACT domain-containing 42.7 1.1E+02 0.0025 23.3 6.1 42 114-156 5-46 (142)
130 cd04891 ACT_AK-LysC-DapG-like_ 42.6 74 0.0016 19.0 5.8 38 122-159 10-48 (61)
131 PF07485 DUF1529: Domain of Un 42.5 1.2E+02 0.0026 22.8 6.3 52 126-184 69-121 (123)
132 PF14992 TMCO5: TMCO5 family 42.1 44 0.00096 28.9 4.3 31 43-73 140-170 (280)
133 cd04892 ACT_AK-like_2 ACT doma 41.3 80 0.0017 19.0 5.9 25 124-148 14-38 (65)
134 PRK15422 septal ring assembly 41.0 59 0.0013 22.8 4.0 26 49-74 13-38 (79)
135 PLN02317 arogenate dehydratase 40.7 1.7E+02 0.0038 26.4 8.1 42 123-164 293-349 (382)
136 PTZ00324 glutamate dehydrogena 40.2 2.4E+02 0.0053 28.8 9.6 78 101-181 216-299 (1002)
137 cd04919 ACT_AK-Hom3_2 ACT doma 39.9 95 0.0021 19.5 6.4 27 124-150 15-41 (66)
138 TIGR01268 Phe4hydrox_tetr phen 39.9 1.2E+02 0.0026 27.9 7.0 56 123-181 26-82 (436)
139 PF09789 DUF2353: Uncharacteri 39.5 1.3E+02 0.0028 26.6 6.9 35 41-75 66-100 (319)
140 cd04913 ACT_AKii-LysC-BS-like_ 39.5 97 0.0021 19.5 6.3 39 122-160 11-50 (75)
141 TIGR01270 Trp_5_monoox tryptop 38.5 1.2E+02 0.0025 28.2 6.7 42 123-164 41-84 (464)
142 smart00338 BRLZ basic region l 38.3 50 0.0011 21.5 3.3 22 53-74 25-46 (65)
143 cd04923 ACT_AK-LysC-DapG-like_ 37.3 98 0.0021 18.9 6.2 24 124-147 14-37 (63)
144 PF00170 bZIP_1: bZIP transcri 36.9 57 0.0012 21.2 3.4 22 53-74 25-46 (64)
145 PRK14638 hypothetical protein; 36.9 1.9E+02 0.0042 22.3 7.0 54 130-184 14-67 (150)
146 cd04918 ACT_AK1-AT_2 ACT domai 36.0 1.2E+02 0.0026 19.4 5.2 33 124-156 14-46 (65)
147 cd04932 ACT_AKiii-LysC-EC_1 AC 35.2 1.4E+02 0.003 20.0 6.0 24 123-146 14-37 (75)
148 cd04890 ACT_AK-like_1 ACT doma 35.1 1.1E+02 0.0025 19.0 5.9 34 124-159 14-47 (62)
149 PF09383 NIL: NIL domain; Int 33.4 1.4E+02 0.0031 19.7 8.5 51 125-180 17-67 (76)
150 PF07544 Med9: RNA polymerase 33.3 1.6E+02 0.0036 20.3 5.7 49 21-74 31-79 (83)
151 PRK14639 hypothetical protein; 32.3 2.3E+02 0.005 21.6 6.8 53 130-184 3-55 (140)
152 PF04508 Pox_A_type_inc: Viral 31.5 82 0.0018 16.8 2.8 17 56-72 3-19 (23)
153 cd04937 ACT_AKi-DapG-BS_2 ACT 31.0 1.4E+02 0.0031 18.9 4.9 22 123-144 14-35 (64)
154 PRK06635 aspartate kinase; Rev 29.5 2.6E+02 0.0057 24.7 7.5 51 110-160 260-311 (404)
155 PRK08526 threonine dehydratase 29.0 4.3E+02 0.0092 23.7 8.8 64 113-182 327-395 (403)
156 PRK14644 hypothetical protein; 28.5 2.5E+02 0.0053 21.4 6.2 48 132-184 6-53 (136)
157 COG0779 Uncharacterized protei 28.4 1.6E+02 0.0035 23.1 5.2 56 127-184 10-66 (153)
158 PF09849 DUF2076: Uncharacteri 28.4 1.4E+02 0.0029 25.4 5.1 51 20-73 6-74 (247)
159 PF10393 Matrilin_ccoil: Trime 27.8 1.6E+02 0.0035 18.4 4.1 27 48-74 17-43 (47)
160 PF08826 DMPK_coil: DMPK coile 27.8 1.6E+02 0.0034 19.5 4.3 26 49-74 34-59 (61)
161 KOG3820 Aromatic amino acid hy 27.2 3E+02 0.0065 25.2 7.2 61 121-185 44-105 (461)
162 PF07106 TBPIP: Tat binding pr 26.9 3E+02 0.0065 21.3 6.9 27 49-75 111-137 (169)
163 cd04098 eEF2_C_snRNP eEF2_C_sn 26.6 1.6E+02 0.0034 19.9 4.4 66 113-189 4-69 (80)
164 PRK14637 hypothetical protein; 26.6 3.1E+02 0.0067 21.3 7.6 58 125-184 9-66 (151)
165 PRK06291 aspartate kinase; Pro 26.3 3.4E+02 0.0074 24.8 7.8 42 112-153 321-364 (465)
166 cd04916 ACT_AKiii-YclM-BS_2 AC 25.9 1.7E+02 0.0037 18.1 6.3 25 124-148 15-39 (66)
167 COG0317 SpoT Guanosine polypho 25.7 3.4E+02 0.0073 26.7 7.8 74 103-182 613-692 (701)
168 cd04915 ACT_AK-Ectoine_2 ACT d 25.7 1.9E+02 0.0042 18.6 4.7 27 124-150 15-41 (66)
169 PF00679 EFG_C: Elongation fac 25.3 2.3E+02 0.005 19.4 6.9 64 113-188 7-70 (89)
170 cd04936 ACT_AKii-LysC-BS-like_ 25.3 1.7E+02 0.0036 17.8 6.2 23 124-146 14-36 (63)
171 PF14193 DUF4315: Domain of un 25.0 1.6E+02 0.0034 20.7 4.2 27 49-75 10-36 (83)
172 cd04912 ACT_AKiii-LysC-EC-like 24.4 2.2E+02 0.0047 18.8 8.1 23 123-145 14-36 (75)
173 PRK14645 hypothetical protein; 24.2 3.5E+02 0.0075 21.1 7.7 55 129-184 14-69 (154)
174 PF08490 DUF1744: Domain of un 23.9 1.8E+02 0.004 26.2 5.4 52 127-189 320-371 (396)
175 cd04871 ACT_PSP_2 ACT domains 23.5 1.1E+02 0.0024 21.1 3.1 56 123-184 10-74 (84)
176 PF14197 Cep57_CLD_2: Centroso 23.2 1.9E+02 0.0041 19.5 4.2 28 46-73 39-66 (69)
177 COG3978 Acetolactate synthase 23.2 2.8E+02 0.006 19.6 7.5 62 114-183 5-68 (86)
178 cd04924 ACT_AK-Arch_2 ACT doma 22.9 1.9E+02 0.0042 17.7 6.4 35 124-160 15-49 (66)
179 cd04934 ACT_AK-Hom3_1 CT domai 22.9 2.4E+02 0.0052 18.8 6.8 23 124-146 15-37 (73)
180 TIGR00657 asp_kinases aspartat 22.6 5.1E+02 0.011 23.3 8.1 41 110-150 300-341 (441)
181 PF13840 ACT_7: ACT domain ; P 22.6 2E+02 0.0044 18.5 4.2 33 113-145 7-42 (65)
182 PF13224 DUF4032: Domain of un 22.3 1.9E+02 0.0041 23.1 4.6 40 126-165 20-59 (165)
183 PRK14633 hypothetical protein; 22.0 3.8E+02 0.0081 20.7 6.4 52 130-184 10-61 (150)
184 PRK14626 hypothetical protein; 21.8 3.3E+02 0.0072 20.0 6.5 25 49-73 7-31 (110)
185 KOG3896 Dynactin, subunit p62 21.6 1.1E+02 0.0025 27.3 3.5 26 48-73 140-165 (449)
186 COG4710 Predicted DNA-binding 21.6 1.8E+02 0.004 20.1 3.8 33 22-61 15-48 (80)
187 PRK12729 fliE flagellar hook-b 21.4 2.4E+02 0.0053 21.5 4.8 29 41-69 54-82 (127)
188 PRK14641 hypothetical protein; 21.3 4.3E+02 0.0092 21.1 6.8 48 135-184 20-67 (173)
189 KOG3852 Uncharacterized conser 21.1 1.2E+02 0.0025 27.0 3.4 31 26-59 144-174 (426)
190 PF12180 EABR: TSG101 and ALIX 21.0 1.1E+02 0.0024 18.1 2.2 13 54-66 23-35 (35)
191 PRK12821 aspartyl/glutamyl-tRN 20.9 1.9E+02 0.0042 26.8 4.9 55 14-72 358-419 (477)
192 PRK14625 hypothetical protein; 20.5 3.6E+02 0.0078 19.9 6.3 25 49-73 4-28 (109)
193 PF03285 Paralemmin: Paralemmi 20.4 3.3E+02 0.0071 23.6 6.0 27 49-75 5-31 (278)
194 cd04935 ACT_AKiii-DAPDC_1 ACT 20.3 2.8E+02 0.006 18.5 6.5 53 124-181 15-67 (75)
195 PRK00227 glnD PII uridylyl-tra 20.2 2.6E+02 0.0056 27.3 5.9 63 109-185 630-692 (693)
196 PRK14647 hypothetical protein; 20.1 4.2E+02 0.0092 20.6 7.2 52 131-184 15-66 (159)
197 PRK14623 hypothetical protein; 20.0 3.6E+02 0.0078 19.7 6.4 25 49-73 3-27 (106)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.46 E-value=1.5e-13 Score=89.76 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=47.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCChhhhHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQ--RPMEATSLPDQLDEATKYIKRLQ 60 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~--~~~~k~s~~~~l~~ai~yI~~Lq 60 (189)
+|..|+..||+||..||..|..|+.+||.. ....|.+..++|..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999986 24566777777999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.46 E-value=8e-14 Score=91.98 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=48.6
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
.+.+..|+..||+||..||..|..|+++||......|.+.+.+|..||+||+.|+..+
T Consensus 2 ~~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 2 KSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999843333344444999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.37 E-value=1.8e-12 Score=83.69 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029713 13 KTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (189)
Q Consensus 13 ~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~ 64 (189)
+..||+||..||+.|..|+++||......|.+.+.+|..||+||+.|++.++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999965423333444449999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.90 E-value=3.3e-09 Score=94.29 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=51.8
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQR-PMEATSLPDQLDEATKYIKRLQTNLERM 66 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~-~~~k~s~~~~l~~ai~yI~~Lq~~v~~L 66 (189)
-+|..||++||+||..||+++..|..|||... ...|+.++.||..+++||+.||+..++.
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999884 3356666667999999999999888744
No 5
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.56 E-value=2.7e-07 Score=76.92 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=56.8
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 4 NPSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 4 ~~~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+..+.|..||..||+||.++.+.|..|+.+||...-..+.+...+|..|..||+.|+.+..+.....+++.
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34677999999999999999999999999999875332222445599999999999988877776655543
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.54 E-value=2.1e-07 Score=74.65 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=56.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPME----ATSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~----k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+|..|-..||+||+-||..|+.|..|||.....+ |.|..-||..+|+||..|......-+++...|
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999876555 77777779999999999998887777665544
No 7
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.33 E-value=5.4e-07 Score=74.92 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=56.6
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRP-MEATSLPDQLDEATKYIKRLQTNLERMKE 68 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~-~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~ 68 (189)
...+..+|..||+|=+.+|..|..||.+||.... ..|.|..++|.-||.||+.|++-++.-..
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3457788999999999999999999999999987 88899999999999999999998876653
No 8
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.22 E-value=3.6e-06 Score=59.26 Aligned_cols=56 Identities=23% Similarity=0.480 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCCC---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 20 RNQMKALYSTLNSIVPHQR---PMEATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 20 R~~mn~~~~~LrsllP~~~---~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
-++||++...|+.|||... ..+|+|...+|.|+.+||+.|+.+|.+|.++..++..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999763 2478999999999999999999999999999998875
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.22 E-value=1.1e-06 Score=84.17 Aligned_cols=54 Identities=24% Similarity=0.438 Sum_probs=48.8
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCChhhhHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQR----PMEATSLPDQLDEATKYIKRLQTN 62 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~----~~~k~s~~~~l~~ai~yI~~Lq~~ 62 (189)
.-.|..|+.+||+||++||..+..|.+|||... |+||.+| |..||.+|+.+++.
T Consensus 18 r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tV---Lr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 18 RKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTV---LRMAVDHLRLIKEQ 75 (803)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHH---HHHHHHHHHHHhhh
Confidence 345899999999999999999999999999775 7788888 99999999999884
No 10
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=8.6e-05 Score=51.37 Aligned_cols=72 Identities=8% Similarity=0.033 Sum_probs=51.8
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccC
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDG 186 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~ 186 (189)
.+.|.|.. ++|+|.++..+|..+|++|++|.+++ .++.++.+|.+.-.++...+.-....+.+.|.+++.++
T Consensus 2 ~~ei~~~D-r~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSD-RKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence 56777765 55799999999999999999999996 89999999999633222000012335666777766553
No 11
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.97 E-value=4.3e-06 Score=70.59 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=47.7
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCChhhhHHHHHHHHHHHHHHHH
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM-----EATSLPDQLDEATKYIKRLQTNLE 64 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~-----~k~s~~~~l~~ai~yI~~Lq~~v~ 64 (189)
.++..|-..||+||.+||+.+..|+.|||...++ .|.-..+||.-+++|+++||....
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3577888999999999999999999999977554 345556669999999999986543
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.96 E-value=6.6e-05 Score=62.86 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=53.0
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
.-+|..--+.||+|=+++|+.|.+|+-=. ...+.-+.-..+||..||.||..||.-++++.+....+
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT-~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRT-SSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 44677788999999999999999997644 12333445666779999999999999999998765555
No 13
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=0.00011 Score=51.01 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=52.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs--~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.|.|..+ +|+|.+|.++|..+|++|.+|.++ +.|+++.-+|.+...+..+.+......|+++|++++
T Consensus 3 lev~a~DR-pGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 3 LQIRCVDQ-KGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEeCCc-ccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHh
Confidence 56677654 579999999999999999999999 999999999999543333212223457777777765
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=0.00018 Score=49.57 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=51.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.|.+.. ++|+|.+|.++|.++||+|..|.|++.|+++.-+|.+.-.++. .++-....+.|++.+
T Consensus 3 viev~a~D-RpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~---kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSAR-KPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN---KLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEECC-cCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC---CCCCHHHHHHHHHHh
Confidence 35666765 4579999999999999999999999999999999999855543 354444445555544
No 15
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00019 Score=49.94 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=52.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCcc----HHHHHHHHHHHhc
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDA----SARISERLKKFGQ 184 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~----~~~l~~~L~~~i~ 184 (189)
.|.|.|..+ ||+|.+|..+|-++|++|.+|.|++.|+++.-+|.+.-.++. .+. .+.|.++|.+++.
T Consensus 3 vveV~~~DR-pGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~---kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDR-PKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR---TLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCc-CcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC---ccCCHHHHHHHHHHHHHHHh
Confidence 366778654 579999999999999999999999999999999999866554 343 3456666666653
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=0.00026 Score=48.25 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=48.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.|.|. +++|+|.++..+|..+|++|++|.+.+. +|.++-+|.+.-.++. .++.....++|++.+
T Consensus 3 ~i~v~~~-Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~---~~~~~~~~~~l~~~L 69 (73)
T cd04900 3 EVFIYTP-DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGE---PIGERERLARIREAL 69 (73)
T ss_pred EEEEEec-CCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCC---CCChHHHHHHHHHHH
Confidence 5666676 4567999999999999999999999877 7899999998744343 344344444444443
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=0.00034 Score=47.71 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=53.5
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.|.|+ .++++|.++.-+|..+||+|++|.+. +.+|.++-+|.+. +.. +-+...+.++|++++
T Consensus 3 eI~V~~~-Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~--d~~---~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAG-DKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT--GWK---RGETAALGHALQKEI 67 (68)
T ss_pred EEEEEEC-CCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe--cCC---ccchHHHHHHHHHhh
Confidence 5666776 45679999999999999999999996 5688999999997 222 588899999999876
No 18
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.81 E-value=1.4e-05 Score=68.53 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=47.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERM 66 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L 66 (189)
+|.--|--||+|-+-||..|..||+|||... ..|.|...||..+.+||.+|+..--+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3556678899999999999999999999653 456666666999999999998765444
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.001 Score=45.55 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=50.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecC-CC-CCCCccHHHHHHHHHHHhc
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIG-DS-GSDHDASARISERLKKFGQ 184 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~-~~-~~~~~~~~~l~~~L~~~i~ 184 (189)
|.|.+. .++++|.+|..+|.++|++|++|.+++.++.++.+|.+.-.+ +. ..+.-....|.+.|.+++.
T Consensus 3 ~~v~~~-Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 3 IELTGT-DRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEC-CCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 566666 456799999999999999999999999999999999987332 22 1011123567777776664
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0019 Score=42.94 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=42.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDS 165 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~ 165 (189)
|.|.+..+ +++|.+|+.+|.+++++|.++.+.+.++.++.+|++....+.
T Consensus 3 l~v~~~d~-~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~ 52 (70)
T cd04899 3 LELTALDR-PGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQ 52 (70)
T ss_pred EEEEEcCC-ccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCC
Confidence 55666544 569999999999999999999999988899999999865554
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.003 Score=42.92 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=50.2
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhcc
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQD 185 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~ 185 (189)
.|.|.+.. ++++|.+|..+|.++|++|++|.+.+.++..+.+|++.-.++. .++. ...++|++.+..
T Consensus 3 ri~V~~~D-~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~---~~~~-~~~~~l~~~l~~ 69 (72)
T cd04926 3 RLELRTED-RVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN---PVDP-KTIEAVRQEIGP 69 (72)
T ss_pred EEEEEECC-ccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC---cCCH-HHHHHHHHHhcc
Confidence 45555654 4579999999999999999999999888888899998744433 2443 455667776653
No 22
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.22 E-value=0.0002 Score=69.44 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=56.0
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQR-PMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~-~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+.+|..||..|++=|.-||+++..|+.++|... |..|... |+.||+||++|+...+.+......+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSav---Lr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAV---LRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhh---HHHHHHHHHHhhccccccchhhhhhh
Confidence 478999999999999999999999999999774 4456666 99999999999988888776655443
No 23
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=96.78 E-value=0.00079 Score=57.06 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=51.3
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
..+|..-|..||+|-..+|+-|..||.++|......|.+..++|.-|-+||..|++-.
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 4567888999999999999999999999998766778898899999999999998643
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.65 E-value=0.041 Score=35.98 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=40.3
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCC
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGD 164 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~ 164 (189)
.|.|.|..+ +++|.+++.+|.++|+.|.++.+.+.++.....|++.-.++
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~ 51 (70)
T cd04873 2 VVEVYAPDR-PGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDG 51 (70)
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCC
Confidence 355667654 46899999999999999999999888778778888875443
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.62 E-value=0.02 Score=55.62 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccC
Q 029713 110 GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDG 186 (189)
Q Consensus 110 g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~ 186 (189)
.+.+.|.|+|.. ++|+|.+|..+|..+|++|++|.+.+.+|.++.+|.+.-..+. ....+.+.+.|.+++.+.
T Consensus 597 ~~~~~V~V~~~D-rpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~---~~~~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 597 PHMVEVTVVAPD-RRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS---PPDAALLRQDLRRALDGD 669 (774)
T ss_pred CCeEEEEEEecC-CccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC---cchHHHHHHHHHHHHcCC
Confidence 467788887765 5579999999999999999999999999999999999854443 355688999999998875
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.59 E-value=0.034 Score=38.05 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=52.8
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+.|.+.++.+ +|++..+..+|.++|.++.+++.++.++.+...+.+.+.. .+.+++...|.++..
T Consensus 2 ~~vItv~G~Dr-pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~------~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDR-PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE------DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC-CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc------ccHHHHHHHHHHHHH
Confidence 35678877654 5699999999999999999999999999999998888762 366888888887643
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.48 E-value=0.034 Score=35.90 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=45.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED--TIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~--~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.+.|..+ +|.|.++..+|.++|++|.++...+.++ ...+.+... + ......+.+.|+++.
T Consensus 2 ~v~v~~~dr-pG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 2 RVRVIVPDR-PGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV--D-----EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEETS-TTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE--E-----GHGHHHHHHHHHHHT
T ss_pred EEEEEcCCC-CCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC--C-----CCCHHHHHHHHHccc
Confidence 467777654 5799999999999999999999998876 333322222 1 255688888888763
No 28
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.45 E-value=0.035 Score=54.81 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=59.2
Q ss_pred CcEEEEEEC--CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCcc----HHHH
Q 029713 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDA----SARI 175 (189)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~----~~~l 175 (189)
|.|.+.... +...|.|.+. .++|+|.+|..+|..+|++|++|.|+|.|++++-+|.+.-.++. .++ .+.|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~-DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~---~l~~~~~~~~l 877 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAP-DRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ---PLSDPQLCSRL 877 (895)
T ss_pred CEEEEEECCCCCeEEEEEEEC-CCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC---CCCCHHHHHHH
Confidence 345554332 3456666665 45679999999999999999999999999999999999854443 232 3467
Q ss_pred HHHHHHHhcc
Q 029713 176 SERLKKFGQD 185 (189)
Q Consensus 176 ~~~L~~~i~~ 185 (189)
.++|.+++.+
T Consensus 878 ~~~L~~~L~~ 887 (895)
T PRK00275 878 QDAICEQLDA 887 (895)
T ss_pred HHHHHHHHhc
Confidence 7888877754
No 29
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.38 E-value=0.066 Score=36.75 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=52.5
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.|.+.|+.++ |+...|...|.++|.++++++....++.++..+.+.+. . .+.+.+.+.|..+-
T Consensus 2 ~iltv~g~Dr~-GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~----~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRP-GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--W----DAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCC-hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--c----ccHHHHHHHHHHHH
Confidence 45777887654 69999999999999999999999999998888877754 2 46688888887754
No 30
>PRK00194 hypothetical protein; Validated
Probab=96.30 E-value=0.034 Score=38.98 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.|.+.|..+ +|++..+...|-++|++|++.+..+.++.+...+.+..... ..+.+.+.+.|.++-
T Consensus 3 ~~~ltv~g~Dr-pGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDK-VGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES----KKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCC-CCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC----CCCHHHHHHHHHHHH
Confidence 45677888765 56999999999999999999999888887777777765432 256788888887764
No 31
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.29 E-value=0.033 Score=54.87 Aligned_cols=70 Identities=7% Similarity=0.023 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCcc---HHHHHHHHHHHhcc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDA---SARISERLKKFGQD 185 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~---~~~l~~~L~~~i~~ 185 (189)
--.|.|.|.. ++|+|.+|.++|.++|++|.+|.|+|.|+++.-+|.+.-.++. .++ ...|+++|..++.+
T Consensus 808 ~TvlEV~a~D-RpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~---~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 808 RSYMELIALD-QPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR---ALNEELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEeCC-chHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC---cCCHHHHHHHHHHHHHHHhh
Confidence 4557777754 5579999999999999999999999999999999999755443 355 34666777766644
No 32
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.12 E-value=0.0039 Score=48.74 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=47.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
++--||..||+|-.-+|+.|..||..+|..+ -||.|...+|.-|.-||.-|-.-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlP-sdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCC-ccccccccchhhcccCCchhhhcc
Confidence 6778999999999999999999999999654 578888888999999998886544
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.11 E-value=0.081 Score=35.70 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=48.3
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCC-ccHHHHHHHHHHHhc
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDH-DASARISERLKKFGQ 184 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~-~~~~~l~~~L~~~i~ 184 (189)
|.+.|..+ +|++.+|...|-++|+.+++.+..+..+...+.+.+++..+. + .+.+.+.+.|..+-.
T Consensus 2 i~v~g~D~-~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDR-PGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG---FDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCC-CCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCC---CCCCHHHHHHHHHHHHH
Confidence 56677655 469999999999999999999988643333455555555443 2 578999999887754
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.09 E-value=0.08 Score=52.44 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=61.0
Q ss_pred CcEEEEEEC--CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC-CCCCccHHHHHHH
Q 029713 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDS-GSDHDASARISER 178 (189)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~-~~~~~~~~~l~~~ 178 (189)
|.|.+.... ....|.|.|.. ++|+|.+|..+|.++|++|.+|.+++.++++.-+|.+.-.++. +.+.-..+.|.+.
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~D-rpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRD-RPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECC-cCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHH
Confidence 445554322 34567777765 4579999999999999999999999999999999999754443 1001123578888
Q ss_pred HHHHhccC
Q 029713 179 LKKFGQDG 186 (189)
Q Consensus 179 L~~~i~~~ 186 (189)
|.+++.+.
T Consensus 910 L~~~L~~~ 917 (931)
T PRK05092 910 LLAALAEG 917 (931)
T ss_pred HHHHhcCc
Confidence 88888654
No 35
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.08 E-value=0.049 Score=38.18 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhcc
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQD 185 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~ 185 (189)
+.|.+.|+.+ +|++..|...|-++|+++++.+..+.++.+...+.+..... +.+.+.+.+.|..+-..
T Consensus 2 ~vl~i~g~D~-pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~----~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDR-VGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISES----NLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCC----CCCHHHHHHHHHHHHHH
Confidence 4577788765 56999999999999999999999888887777777765431 36788999888876543
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.07 E-value=0.077 Score=52.26 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=57.3
Q ss_pred CcEEEEEEC--CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCcc---HHHHH
Q 029713 102 PQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDA---SARIS 176 (189)
Q Consensus 102 ~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~---~~~l~ 176 (189)
|.|.+.... +...|.|.+.. ++|+|.+|..+|.++|++|.+|.|+|.|+++.-+|.+.-.++. .++ ...|+
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~D-rpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~---~~~~~~~~~l~ 859 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPD-RPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR---PLSESARQALR 859 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCC-cCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC---cCChHHHHHHH
Confidence 345554332 34567777654 5679999999999999999999999999999999999744443 232 24666
Q ss_pred HHHHHHhc
Q 029713 177 ERLKKFGQ 184 (189)
Q Consensus 177 ~~L~~~i~ 184 (189)
++|.+++.
T Consensus 860 ~~L~~~l~ 867 (869)
T PRK04374 860 DALCACLD 867 (869)
T ss_pred HHHHHHhc
Confidence 66666553
No 37
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.04 E-value=0.069 Score=52.34 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=57.7
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCcc----HHHHHHHHHHHhcc
Q 029713 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDA----SARISERLKKFGQD 185 (189)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~----~~~l~~~L~~~i~~ 185 (189)
+...|.|.+.. ++|+|.+|..+|..+|++|++|.+. +.+|.++-+|.+.-.++. .++ .+.|.+.|.+++.+
T Consensus 667 ~~t~i~V~~~D-rpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~---~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 667 GGTEVFIYAPD-QPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS---PPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CeEEEEEEeCC-CCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC---CCCcHHHHHHHHHHHHHHHcC
Confidence 45677777765 5579999999999999999999998 779999999999866554 243 34588888888876
Q ss_pred C
Q 029713 186 G 186 (189)
Q Consensus 186 ~ 186 (189)
.
T Consensus 743 ~ 743 (850)
T TIGR01693 743 L 743 (850)
T ss_pred C
Confidence 4
No 38
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.01 E-value=0.069 Score=52.51 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=51.5
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+...|.|.|. +++|+|.+|..+|..+|++|++|.++|.|+.+.-+|.+. +....+.-..+.|.+.|.+++
T Consensus 785 ~~T~i~V~a~-DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSAN-DRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeC-CcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHh
Confidence 3456777776 456799999999999999999999999999999999994 222101122346666666554
No 39
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.94 E-value=0.065 Score=36.64 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=47.8
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
.+.++|.+..+ +|+|.+|..++.+.|+.|.++++.. .++.+...|.+++.+. .....+.+.|++
T Consensus 6 ~~~l~i~~~dr-~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~-----~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDR-PGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL-----EHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH-----HHHHHHHHHHCT
T ss_pred EEEEEEEEEcC-CCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH-----HHHHHHHHHHHC
Confidence 34566667544 4699999999999999999999987 4778888999998653 445556555554
No 40
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.91 E-value=0.15 Score=34.64 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=49.2
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhcc
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE------DTIFHTIHSKQIGDSGSDHDASARISERLKKFGQD 185 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~------~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~ 185 (189)
|.+.|..+ +|++.+|.+.|.++|++|.+.+..+.+ +.+...+.+.+ +. ..+...+.+.|..+-..
T Consensus 2 l~v~g~D~-~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~--p~---~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDR-PGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL--PA---GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec--CC---CCCHHHHHHHHHHHHHH
Confidence 45677664 569999999999999999999998877 44545555554 32 47889999988876543
No 41
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.82 E-value=0.11 Score=51.05 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCcEEEEEE--CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCCccHH---H
Q 029713 101 SPQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKQIGDSGSDHDASA---R 174 (189)
Q Consensus 101 ~~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~---~ 174 (189)
.|.|.+... ++...|.|.|.. ++|+|.+|..+|..+|++|++|.+.+ .+|.++-+|.+.-.++. .++.+ .
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~D-rpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~---~~~~~~~~~ 739 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQD-QANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK---LLEFDRRRQ 739 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecC-CccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC---CCCHHHHHH
Confidence 455555433 345677777765 55799999999999999999999976 89999999999855443 34433 5
Q ss_pred HHHHHHHHhccC
Q 029713 175 ISERLKKFGQDG 186 (189)
Q Consensus 175 l~~~L~~~i~~~ 186 (189)
|.+.|.+++.+.
T Consensus 740 l~~~L~~aL~~~ 751 (854)
T PRK01759 740 LEQALTKALNTN 751 (854)
T ss_pred HHHHHHHHHcCC
Confidence 778888887664
No 42
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.80 E-value=0.018 Score=48.52 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=50.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
+|..-|..||+|-..+|..|..||..+|......|.|.-++|.-|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 46677899999999999999999999999998889999999999999998886655
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.79 E-value=0.11 Score=51.18 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=60.8
Q ss_pred CCcEEEEEE--CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccH---HH
Q 029713 101 SPQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDAS---AR 174 (189)
Q Consensus 101 ~~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~---~~ 174 (189)
.|.|.+... ++...|.|.|.. ++++|..|..+|..+|++|++|.|.+. +|.++-+|.+.-.++. .++. +.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~D-rpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~---~~~~~~~~~ 763 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPD-RPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS---PLSQDRHQV 763 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecC-CcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC---CCCHHHHHH
Confidence 455555443 346778877764 557999999999999999999998765 5699999999855544 2443 34
Q ss_pred HHHHHHHHhccC
Q 029713 175 ISERLKKFGQDG 186 (189)
Q Consensus 175 l~~~L~~~i~~~ 186 (189)
|.+.|.+++.+.
T Consensus 764 I~~~L~~aL~~~ 775 (884)
T PRK05007 764 IRKALEQALTQS 775 (884)
T ss_pred HHHHHHHHHcCC
Confidence 888888888664
No 44
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.70 E-value=0.084 Score=51.93 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred CcEEEEEE--CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCccHHHHHHH
Q 029713 102 PQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDASARISER 178 (189)
Q Consensus 102 ~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~ 178 (189)
|-|-++.. .+...|.|.|.. ++++|.++.-+|..+|++|++|.+. +.+|.++-+|.+.-.++.....--.++|.+.
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d-~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~ 744 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPD-QPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHE 744 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecC-CCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHH
Confidence 33445433 356788888765 5579999999999999999999994 6789999999997433321001125567888
Q ss_pred HHHHhccC
Q 029713 179 LKKFGQDG 186 (189)
Q Consensus 179 L~~~i~~~ 186 (189)
|.+++.+.
T Consensus 745 l~~~l~~~ 752 (856)
T PRK03059 745 LAERLAEQ 752 (856)
T ss_pred HHHHHcCC
Confidence 88888764
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.62 E-value=0.14 Score=49.93 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=51.3
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
...|.|.+.. ++|+|.+|..+|..+|++|.+|.+++.|+.++-+|.+.-.++. .++-. .+.|++.+
T Consensus 707 ~t~i~V~a~D-rpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~---~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAAD-RPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG---PLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCC-chhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC---cCchH--HHHHHHHh
Confidence 4667777754 5679999999999999999999999999999999999855554 34433 55555543
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.22 E-value=0.15 Score=50.18 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccH---HHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDAS---ARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~---~~l~~~L~~~ 182 (189)
--.|.|.+.. ++|+|..|.++|.++|++|.+|.|+|.++++.-+|.+.-.++. .++. ..|+++|.++
T Consensus 783 ~T~iev~a~D-rpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~---~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 783 QTEMELFALD-RAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQ---ALDEEERKALKSRLLSN 852 (854)
T ss_pred eEEEEEEeCC-chHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCC---cCChHHHHHHHHHHHHH
Confidence 3557777754 5579999999999999999999999999999999999754443 2443 4455555444
No 47
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.19 E-value=0.2 Score=49.57 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=56.4
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEecCCCCCCCc--c---HHHHHHHHHHHhc
Q 029713 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASF-NVVEDTIFHTIHSKQIGDSGSDHD--A---SARISERLKKFGQ 184 (189)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~v-s~~~~~~~~ti~~k~~~~~~~~~~--~---~~~l~~~L~~~i~ 184 (189)
+...|.|.|.. ++++|.++..+|..+|++|++|.+ ++.+|.++-+|.+.-.++. .+ + .+.|.+.|.+++.
T Consensus 703 ~~t~V~V~~~D-rpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~---~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPD-QHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGE---PIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCC-CCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCC---CccchHHHHHHHHHHHHHHHc
Confidence 56788888765 557999999999999999999998 5678899999999855543 22 2 3457788888876
Q ss_pred cCC
Q 029713 185 DGS 187 (189)
Q Consensus 185 ~~~ 187 (189)
+..
T Consensus 779 ~~~ 781 (895)
T PRK00275 779 NPD 781 (895)
T ss_pred CCC
Confidence 643
No 48
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.10 E-value=0.021 Score=52.27 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCCChhhhHHHHHHHHHHHHHHHHHH
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRP----MEATSLPDQLDEATKYIKRLQTNLERM 66 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~----~~k~s~~~~l~~ai~yI~~Lq~~v~~L 66 (189)
-+|...|+.||-|-..||+.|..|--+.-...| ..|.-| |-.|+.-|-.|+++|.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgI---LhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGI---LHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhH---HHHHHHHHHHHHHHHHHc
Confidence 468889999999999999999999887543322 344555 999999999999999764
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.87 E-value=0.37 Score=32.03 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+.+..+ +|.|.+|+.++.+.|..|.+.+.... ++.....|.+++.+. .....+.++|+++
T Consensus 2 l~v~~~d~-~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~-----~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNR-PGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE-----EHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCC-CchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH-----HHHHHHHHHHhcC
Confidence 34555444 46899999999999999999998765 467667777776653 4556677776653
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.78 E-value=0.43 Score=32.27 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=48.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
|.+.. ..++|.+.++.++|-++|+++.+.+.++.++.+...+.+.+ +. +.+.+.+.+.|..+-.
T Consensus 2 vtv~G-~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~--p~---~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI--PD---SADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc--CC---CCCHHHHHHHHHHHHH
Confidence 44554 45567999999999999999999998888887666665553 32 4678899998887643
No 51
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.78 E-value=0.27 Score=48.52 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccC
Q 029713 110 GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDG 186 (189)
Q Consensus 110 g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~ 186 (189)
++...|.|.|.. ++++|.+|.-+|..+|++|++|.+.+ .+|.++-+|.+.-.++.. .-....|.+.|.+++.|.
T Consensus 688 ~~~~~v~v~~~d-~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 688 NDALEVFVYSPD-RDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCeEEEEEEeCC-CccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence 356788887765 55799999999999999999999975 789999999997443321 123556888888888764
No 52
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.64 E-value=0.38 Score=31.07 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 117 LTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 117 i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
|.+.. ++|.|.+|+.+|.+.|++|.+.+.... ++.....|.+.+.+ . ...+.+.+.|++
T Consensus 3 v~~~d-~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~-~----~~l~~l~~~l~~ 66 (73)
T cd04886 3 VELPD-RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG-A----EHIEEIIAALRE 66 (73)
T ss_pred EEeCC-CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC-H----HHHHHHHHHHHH
Confidence 44544 446899999999999999999987754 35666667776633 1 344566666655
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.53 E-value=0.29 Score=32.57 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=45.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+..+ ++.+.+|+.+|.++|++|...+.+.. ++.....|.+.+.+.. .....+.++|+++
T Consensus 2 ~l~i~~~d~-~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~----~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHR-PGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN----GDIDELLEELREI 66 (76)
T ss_pred EEEEEecCC-CchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH----HHHHHHHHHHhcC
Confidence 345556554 46899999999999999999987653 4556666777654432 2567777777754
No 54
>PRK04435 hypothetical protein; Provisional
Probab=94.46 E-value=0.36 Score=37.46 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=53.3
Q ss_pred ECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.|..+.+.+.+..++ |.|.+|+.+|.+.|++|...+.+. .++....+|.+.+.+.. ...+.|.++|+++
T Consensus 66 ~~r~vtL~i~l~Dr~-GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~----~~L~~Li~~L~~i 135 (147)
T PRK04435 66 KGKIITLSLLLEDRS-GTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME----GDIDELLEKLRNL 135 (147)
T ss_pred CCcEEEEEEEEecCC-CHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH----HHHHHHHHHHHcC
Confidence 456778888776554 689999999999999999998765 46777788888876543 4677888887754
No 55
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.44 E-value=0.52 Score=46.81 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=60.4
Q ss_pred CcEEEEEE--CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEecCCCC-CCCccHHHHHH
Q 029713 102 PQIEIHEM--GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-VEDTIFHTIHSKQIGDSG-SDHDASARISE 177 (189)
Q Consensus 102 ~~V~V~~~--g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-~~~~~~~ti~~k~~~~~~-~~~~~~~~l~~ 177 (189)
+.|.++.. ++...|.|.|.. ++|+|..|..+|..+|++|++|.+.+ .+|.++-+|.+.-..+.- .+.-....|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~D-r~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAAD-HPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAK 798 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCC-CCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 45555543 356788888865 45799999999999999999999876 688888889887544420 00113556888
Q ss_pred HHHHHhccC
Q 029713 178 RLKKFGQDG 186 (189)
Q Consensus 178 ~L~~~i~~~ 186 (189)
.|.+++.+.
T Consensus 799 ~L~~~l~~~ 807 (931)
T PRK05092 799 AIEDALSGE 807 (931)
T ss_pred HHHHHHcCC
Confidence 888887553
No 56
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.30 E-value=0.34 Score=47.53 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=45.1
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDS 165 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~ 165 (189)
...|.|.|.. ++|+|.+|.++|.++|++|.+|.+++.++++.-+|.+....+.
T Consensus 779 ~t~~~v~~~D-rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~ 831 (850)
T TIGR01693 779 ATIMEVRALD-RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831 (850)
T ss_pred eEEEEEEECC-ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC
Confidence 4567777765 4579999999999999999999999999999999999865554
No 57
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.39 Score=46.78 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=57.1
Q ss_pred CCcEEEEEEC--CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHH---HH
Q 029713 101 SPQIEIHEMG--SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASA---RI 175 (189)
Q Consensus 101 ~~~V~V~~~g--~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~---~l 175 (189)
.|.|++.-.. ....+.+.+- .++|+|..+..+|..++|++.+|.|+|+|.++.-+|.+....+. .++.+ .+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~al-DRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~---~l~~~~~q~l 853 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRAL-DRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ---ALNAELRQSL 853 (867)
T ss_pred CCceeeccccCCCceEEEEEeC-CcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc---cCCHHHHHHH
Confidence 3556654332 3456777665 45679999999999999999999999999999999998866665 35332 34
Q ss_pred HHHHHHHhc
Q 029713 176 SERLKKFGQ 184 (189)
Q Consensus 176 ~~~L~~~i~ 184 (189)
.++|.+++.
T Consensus 854 ~~~ll~al~ 862 (867)
T COG2844 854 LQRLLEALL 862 (867)
T ss_pred HHHHHHHhc
Confidence 444444444
No 58
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.30 E-value=1 Score=30.25 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
++|.|.++++.|.++|+.+.+.......+ ..-|.|.+.+...- +......+.+.|++.
T Consensus 9 ~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~~ 67 (75)
T cd04880 9 KPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKRV 67 (75)
T ss_pred cCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHHh
Confidence 45689999999999999999998877654 55677777776531 124455566666553
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.93 E-value=0.89 Score=28.15 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=40.5
Q ss_pred EEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
++.+..++ +.+..++..|.++++++.+......+ +.....|.++.... .+...+.+.|++
T Consensus 2 ~v~~~~~~-~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~ 62 (71)
T cd04876 2 RVEAIDRP-GLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL-----EHLARIMRKLRQ 62 (71)
T ss_pred EEEEeccC-cHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH-----HHHHHHHHHHhC
Confidence 44555444 58999999999999999999887655 54555566654332 344555555553
No 60
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.54 E-value=1.3 Score=38.24 Aligned_cols=69 Identities=7% Similarity=-0.054 Sum_probs=53.7
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+.|.+.|..++ |+...|...|-++|++|.+.+..+..+.-+|++.+.+..+. +.+.+.|.+.|.++-.
T Consensus 7 ~~vitv~G~Drp-GIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~---~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAA-GIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE---GLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCC-CHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC---CCCHHHHHHHHHHHHH
Confidence 456888887654 69999999999999999999997544545566677776554 5788999999987644
No 61
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=91.96 E-value=2 Score=29.19 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCC
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGD 164 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~ 164 (189)
.++|.|.++++.|.++|+.+.+...... ++...|.|.+.....
T Consensus 10 d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 10 NKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred CCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 3456899999999999999999987765 346668888887653
No 62
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.67 E-value=1.2 Score=29.04 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=43.2
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-E-DTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~-~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
++|++.+..++ |.+.+++.+|.+.++.+.+.+.... + +.....+.....+ ......+.+.|++
T Consensus 1 ~yl~i~~~d~~-g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKP-GVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS-----EAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCC-cHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC-----HHHHHHHHHHHHc
Confidence 35777776554 5899999999999999999987654 3 5555556555332 2445566666664
No 63
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.47 E-value=2.1 Score=36.87 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=50.5
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+.|.+.|..+ +|+...|.++|-++|+++.+.+.++ .++.+.-.+.+.+... ..+.+.|.+.|.++-.
T Consensus 6 ~~vitv~G~Dr-pGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~----~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 6 RYVLTLSCPDR-PGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL----IFNLETLRADFAALAE 75 (286)
T ss_pred eEEEEEECCCC-CcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHHHHH
Confidence 35678888655 5699999999999999999999998 7775444444444222 3567889888887643
No 64
>PRK08577 hypothetical protein; Provisional
Probab=91.37 E-value=2.9 Score=31.67 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+.+..++ |.|.+|+.+|.++++++.+.+..+. ++.....+.+.+.+.. ...+.+.+.|+++
T Consensus 56 ~~~I~V~~~Dr~-GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~----~~l~~l~~~L~~l 123 (136)
T PRK08577 56 LVEIELVVEDRP-GVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD----IDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEEcCCC-CHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch----hhHHHHHHHHHcC
Confidence 577888876554 6899999999999999999887764 3444556667665532 3457777777653
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=91.31 E-value=1.3 Score=29.82 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=40.2
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.|.|..+. |+|.+|+.++.+++..+.+.++.+. +. ..|..++.+- ...+.+..+|+++
T Consensus 3 l~I~~~dr~-Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~~-----~~L~~li~~L~~i 61 (74)
T cd04877 3 LEITCEDRL-GITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIEF-----EKLQTLMPEIRRI 61 (74)
T ss_pred EEEEEEccc-hHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecCH-----HHHHHHHHHHhCC
Confidence 556665544 6899999999999999999999765 44 2344444332 3456666666543
No 66
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.90 E-value=0.21 Score=46.52 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHH
Q 029713 18 NRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIK 57 (189)
Q Consensus 18 ~RR~~mn~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~yI~ 57 (189)
+-|+++|.-+..|.+|||.. +|.||.|+ |+=++.|++
T Consensus 35 RHRdRLNaELD~lAsLLPfpqdiisKLDkLSV---LRLSVSyLr 75 (712)
T KOG3560|consen 35 RHRDRLNAELDHLASLLPFPQDIISKLDKLSV---LRLSVSYLR 75 (712)
T ss_pred hHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhh---hhhhHHHHH
Confidence 44889999999999999976 58899999 999999985
No 67
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.78 E-value=2.6 Score=26.99 Aligned_cols=46 Identities=7% Similarity=0.005 Sum_probs=32.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSK 160 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k 160 (189)
.+.+.+... +|.|.+++..|.++++.|.+.+....+ +....+|.+.
T Consensus 2 ~l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDK-PGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCC-CChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 355566544 468999999999999999998887653 4444444443
No 68
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.43 E-value=2.8 Score=28.27 Aligned_cols=66 Identities=11% Similarity=-0.037 Sum_probs=49.3
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.|.|.|+.+- |+--++.+.+-+.||.|....+++.|.=-+..|-+.-....+ .+.=+-++++|..+
T Consensus 2 vitvnCPDkt-GLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKT-GLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCcc-CcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence 4677898776 478899999999999999999999988555555555444332 45667888888754
No 69
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=90.41 E-value=1.2 Score=29.39 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+|.|.+|+.+|..-|+.+-+.+++. .++..-.+|.+. +.. -..+.|...|.|++
T Consensus 3 ~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~~----~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 3 PGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GDD----REIEQLVKQLEKLI 58 (63)
T ss_dssp TTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-C----CHHHHHHHHHHCST
T ss_pred cHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eCc----hhHHHHHHHHhccC
Confidence 4689999999999999999999988 555666666665 322 45577777777765
No 70
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=89.69 E-value=3.6 Score=26.03 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=40.7
Q ss_pred EEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+....+ ++.+.+++.+|.++|+.|.+..+...+ +.....|.++ + .....+.+.|+++
T Consensus 3 ~v~~~d~-~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~--~------~~~~~l~~~l~~~ 62 (71)
T cd04879 3 LIVHKDV-PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD--S------PVPEEVLEELKAL 62 (71)
T ss_pred EEEecCC-CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC--C------CCCHHHHHHHHcC
Confidence 3444444 468999999999999999999987654 6666666662 2 2245777777654
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=89.17 E-value=4 Score=35.04 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=46.8
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
.|.++|..++ |+...|...|-++|+++++++-+... +.++-.+.+...+. .++.+.+.+.|..
T Consensus 2 ~itv~g~D~~-GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~----~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQK-GLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF----RLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCC-ChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence 3667787655 68999999999999999999988754 55444444443322 3678888888887
No 72
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=89.06 E-value=4.8 Score=38.95 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=58.1
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccC
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDG 186 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~ 186 (189)
+..+.|.-...+++.|+++.-+|--+++.|.+|++.+ +|.....|.+...-+. ..++..+.+.++..+++.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~ 616 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQ---DFDPQEFLQAYKSGVYSE 616 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCC---CCChHHHHHHHHHhhcCC
Confidence 3445554423344689999999999999999999999 8888899999877676 589999999999988875
No 73
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=88.59 E-value=0.34 Score=46.28 Aligned_cols=46 Identities=15% Similarity=0.419 Sum_probs=39.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHH
Q 029713 9 RTDRKTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIK 57 (189)
Q Consensus 9 ~~~h~~~ER~RR~~mn~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~yI~ 57 (189)
|++-..+=|.||.+=|+-|+.|..+||-. +-.||+|| ++-||.|++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSi---mRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASI---MRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHH---HHHHHHHHH
Confidence 45556677999999999999999999954 34799999 999999986
No 74
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=2.8 Score=41.15 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=57.5
Q ss_pred EEEEECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCccHHHH---HHHHH
Q 029713 105 EIHEMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDASARI---SERLK 180 (189)
Q Consensus 105 ~V~~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~~l---~~~L~ 180 (189)
.++...++.+|.|.|+..+ .+|..+.-++...|++|+.|.+- +.+|..+-||.+.--++. .++.++. ...|.
T Consensus 677 ~~r~~~~~teV~V~a~d~p-~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~---~~~~dr~~~~~~~l~ 752 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRP-RLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF---PVEEDRRAALRGELI 752 (867)
T ss_pred eecccCCceEEEEEcCCCc-cHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC---ccchhHHHHHHHHHH
Confidence 3444567889999987654 68999999999999999999995 678889999988744443 2454433 34555
Q ss_pred HHhccCC
Q 029713 181 KFGQDGS 187 (189)
Q Consensus 181 ~~i~~~~ 187 (189)
+++.++.
T Consensus 753 ~~l~s~~ 759 (867)
T COG2844 753 EALLSGK 759 (867)
T ss_pred HHHhcCC
Confidence 5555543
No 75
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=87.89 E-value=3.8 Score=27.65 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecC
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIG 163 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~ 163 (189)
.+|.|.++|..|...|+.+.+..+-+..+ ..-|.|.+.+..
T Consensus 10 ~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 10 EVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 45689999999999999999999987654 445888888765
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=87.85 E-value=1.2 Score=31.96 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.|.++ ++.++|....+..+|-++|+++++.+=+..+|.+-..+.+...+.. .+...+.+.|...
T Consensus 4 avITV~-GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~----~d~~~lr~~l~~~ 68 (90)
T COG3830 4 AVITVI-GKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEV----VDFAALRDELAAE 68 (90)
T ss_pred EEEEEE-cCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHh----ccHHHHHHHHHHH
Confidence 345554 5666789999999999999999999999999988777777765544 7778888777654
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=87.78 E-value=4 Score=35.26 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=48.4
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs--~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+.|.++|+.+. |+...|...|-++|+++++++-. +..+.++-.+........ +++.+.+.+.|.++-.
T Consensus 9 ~~iitv~G~Dr~-GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~---~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLACPSAP-GIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE---AASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEECCCCC-CcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC---CCCHHHHHHHHHHHHH
Confidence 356788887655 68999999999999999999986 334444433333322222 4788899998887643
No 78
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=87.56 E-value=5.4 Score=25.32 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
+.+..... ++.|.+++..|.++++.+.+.+.... ++.....|.+.... ...+.+...|++
T Consensus 3 l~i~~~d~-~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~ 64 (72)
T cd04878 3 LSVLVENE-PGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD------DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEcCC-CcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH------HHHHHHHHHHhC
Confidence 34445444 46899999999999999999988754 45666666666422 234555555553
No 79
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=87.00 E-value=4.2 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=27.4
Q ss_pred EEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC
Q 029713 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE 150 (189)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~ 150 (189)
.+.|...+ +.+.+++.+|..+++.+...+....+
T Consensus 2 ~i~~~~~~-~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRP-GLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCC-chHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 45565544 58999999999999999999987654
No 80
>PRK07334 threonine dehydratase; Provisional
Probab=86.72 E-value=5.2 Score=35.81 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.|.|.+..++ ++|.+|+.+|.+.+++|.++++.+. ++.....|.+++.+- .....|..+|++.
T Consensus 327 v~l~I~~~dr~-GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~-----~~L~~vi~~Lr~~ 395 (403)
T PRK07334 327 ARLRVDIRDRP-GALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA-----AHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEeCCCC-CHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH-----HHHHHHHHHHHHc
Confidence 77777776554 6899999999999999999998754 567667777776543 4556777777764
No 81
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.71 E-value=6.1 Score=25.05 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 116 VLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 116 ~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.. +++.+.+++..|.++|+.+.+...... ++.....|.++ + .....+.+.|+++
T Consensus 3 ~i~~~d-~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~--~------~~~~~~i~~l~~~ 62 (71)
T cd04903 3 IVVHKD-KPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD--Q------PIDEEVIEEIKKI 62 (71)
T ss_pred EEEeCC-CCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC--C------CCCHHHHHHHHcC
Confidence 444544 446899999999999999999987652 34544445443 2 1335666776653
No 82
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.60 E-value=0.71 Score=41.82 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHHH
Q 029713 13 KTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIKR 58 (189)
Q Consensus 13 ~~~ER~RR~~mn~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~yI~~ 58 (189)
+-.-|.||++=|.-|..|..+||-. +..||+|+ ++-+..|||.
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasi---iRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASI---IRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhh---hhHHHHHHHH
Confidence 4456899999999999999999965 34799999 9999999975
No 83
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=86.47 E-value=0.51 Score=37.11 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=35.5
Q ss_pred CCchhhhhH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHH
Q 029713 6 SSSRTDRKT-IERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQ 60 (189)
Q Consensus 6 ~s~~~~h~~-~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq 60 (189)
++.+.--+. .||.|-+++|+.|.-|++|+|..+...|.-+ ..|.-+-.||..|.
T Consensus 19 ~~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~-ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 19 VSEEECDRQRKERGRKRRLSDASTLLGKLEPGSPADGKRGK-KTLRIGTDSIQSLD 73 (173)
T ss_pred hhhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCcccccc-cccccCCCchhhHH
Confidence 333333333 5999999999999999999998764433322 22555656665543
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.40 E-value=6.7 Score=27.89 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=43.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.+.... ++|.|.++|..|..+|+.+.+..+-...+ ..-|.|.+.+.... ......+-+.|++.+
T Consensus 16 slif~l~~-~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~---~~~~~~~l~~L~~~~ 82 (90)
T cd04931 16 SLIFSLKE-EVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKS---APALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEcCC-CCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCC---CHHHHHHHHHHHHHh
Confidence 34444444 45689999999999999999999987543 44578888776431 133344555555544
No 85
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.45 E-value=8.2 Score=25.44 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~---~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
++|.|.+++..|.++|+.|++...... .+.....+++.. +.. + ..+.|.+.|.+.
T Consensus 9 ~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~-e~~---~-~~~~i~~~L~~~ 66 (72)
T cd04884 9 KPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP-MDR---S-KENELIEELKAK 66 (72)
T ss_pred CCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE-ecc---h-HHHHHHHHHhCc
Confidence 456899999999999999999987654 334445555554 222 1 245666665543
No 86
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.06 E-value=8.2 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=34.2
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCC
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGD 164 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~ 164 (189)
.++|.|.++|..|+..|+.+.+..+-+. +...-|.|.+.+...
T Consensus 9 ~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 9 NEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3456799999999999999999999765 344558888887654
No 87
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=85.04 E-value=6.5 Score=30.39 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+.+.-..+. |.|+++|+++-+.++.|++.+=+ +.+|+.--|+........ .+.+.+.+.|+++
T Consensus 73 ~TL~l~ledr~-G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~----~~V~~ii~kl~k~ 138 (150)
T COG4492 73 ITLSLSLEDRV-GILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSME----KDVDKIIEKLRKV 138 (150)
T ss_pred EEEEEEEhhhh-hhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhh----hhHHHHHHHHhcc
Confidence 44555444444 58999999999999999999976 789999888888877543 7889999998875
No 88
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.79 E-value=9.4 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=27.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
.+.+.++.+ +|.|.+++..|.++|+++.+......
T Consensus 3 ~~~v~~~d~-~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDE-PGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCC-CCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 355555544 46899999999999999998876654
No 89
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=83.51 E-value=5.8 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
.++|.+.++...|.++|+.+.+..+.. .++.....|.++. . . +..+.+.|++
T Consensus 8 d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~--~-----~-~~~~~~~l~~ 61 (73)
T cd04902 8 DRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE--P-----V-PDEVLEELRA 61 (73)
T ss_pred CCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC--C-----C-CHHHHHHHHc
Confidence 445789999999999999998887765 4567777776653 1 1 2466666654
No 90
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=83.27 E-value=7.7 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=32.5
Q ss_pred EeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 029713 118 TTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSK 160 (189)
Q Consensus 118 ~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k 160 (189)
....+ +|.|.+++..|.+.|+.|.+..+...+ +..+..|.+.
T Consensus 4 ~~~d~-~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 4 FVENK-PGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred EeCCC-CChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 34433 468999999999999999988887654 6777777665
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=81.97 E-value=11 Score=29.71 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=45.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.+.-. +++|.|.+|...|...|+.+.+..+...+ +....+|++...+ -..+.+...|.|++
T Consensus 4 isI~ve-n~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~------~~i~qi~kQl~Kli 67 (157)
T TIGR00119 4 LSVLVE-NEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD------KVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEc-CCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH------HHHHHHHHHHhcCc
Confidence 344433 44578999999999999999999998665 5666777776421 45577777777765
No 92
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.78 E-value=12 Score=24.32 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.....+ +.|.+++..|.++|+.+.+...... ++.....|++... +.+.+.+.|++.
T Consensus 3 ~~~v~~~d~p-G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~--------~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRP-GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM--------NPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCC-CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC--------CHHHHHHHHHHC
Confidence 3455555444 5899999999999999998876543 4566677776542 124677777654
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=81.49 E-value=5.8 Score=32.17 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.|.+++.. ++|++..|.++|.++|..+++++.+..++.+--.+.+ ..+. ....++...|..+-
T Consensus 8 ~lviTviG~D-rpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv--s~~~----~~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALGAD-RPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL--SGSW----NAITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEcCC-CChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE--eCCh----hHHHHHHHHHHhhh
Confidence 4567777654 5579999999999999999999999999966555555 3332 46677877776653
No 94
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=80.57 E-value=13 Score=29.38 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=44.3
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.+.-. +++|.|.+|...|...|+.+.+..+...+ +....+|++...+ -..+.+...|.|++
T Consensus 5 IsV~ve-N~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~------~~i~qi~kQl~KLi 68 (161)
T PRK11895 5 LSVLVE-NEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE------QVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEc-CCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH------HHHHHHHHHHhccc
Confidence 344333 45578999999999999999999988654 5666778776432 34467777776664
No 95
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=79.69 E-value=15 Score=38.77 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=50.7
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee---C--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 111 SALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---E--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 111 ~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~---~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.+.++|..... +..|++++-+|+++||.|+...-..+ + ...+|.|.++...+. .++...+.+.+.+++
T Consensus 488 ~~~~lkiy~~~~-~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~---~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 488 GRLRLKIYHPGE-PLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD---ALDLDDIRERFEEAF 561 (1528)
T ss_pred CeEEEEEEcCCC-CcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc---cccHHHHHHHHHHHH
Confidence 358888876443 35799999999999999999875432 2 256789999887765 367777777666553
No 96
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=79.47 E-value=2.5 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 121 LDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 121 ~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
..++|.+.+++.+|.+.|+.+...+....++.....|.+... ....+.++|++
T Consensus 7 ~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--------~l~~li~~l~~ 59 (69)
T cd04901 7 KNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--------VSEELLEALRA 59 (69)
T ss_pred cCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--------CCHHHHHHHHc
Confidence 345579999999999999999887766555666666655433 23566666664
No 97
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=79.21 E-value=16 Score=25.31 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=42.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.+.-. +.+|.|.++..+|..-|+.+-+.++...+ +....+|.+...+ -..+.+...|.|++
T Consensus 5 isi~v~-n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~------~~i~qi~kQL~KLi 68 (76)
T PRK06737 5 FSLVIH-NDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE------NEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEe-cCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH------HHHHHHHHHHhCCc
Confidence 444443 44579999999999999999999988654 4555667665222 34566666666654
No 98
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=79.17 E-value=15 Score=23.83 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=31.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQ 161 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~ 161 (189)
+.|..+. ++|.|.+++++|.+.|+.|.+..+...++. ..++...
T Consensus 4 i~v~v~d-~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 4 LSVFLEN-KPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEcC-CCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 3444443 446899999999999999999988766664 4555544
No 99
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.65 E-value=9.2 Score=24.10 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
++|.|.+++..|.++|+.|.+....... +...+.|.++ . .+++.+.|++.
T Consensus 9 ~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~--------~~~~~~~L~~~ 60 (65)
T cd04882 9 KPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D--------IEKAIEVLQER 60 (65)
T ss_pred CCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C--------HHHHHHHHHHC
Confidence 4568999999999999999888765543 5555555554 1 25666666553
No 100
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.59 E-value=11 Score=27.96 Aligned_cols=42 Identities=2% Similarity=-0.197 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCC
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGD 164 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~ 164 (189)
.+|.|.++|..|..+|+.+.+..+-+..+ ..-|.|.+.+...
T Consensus 51 ~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 51 GFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 45689999999999999999999987643 3447888877654
No 101
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=73.90 E-value=31 Score=27.88 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee----CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV----EDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~----~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.|.+.- ..++|++.++.++|-++|++|.+-+.-+. .+.-+|..++++.-+. +.+...|++.|..+-
T Consensus 96 ~~v~v~G-~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~---~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEV-ADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA---SQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC---CCCHHHHHHHHHHHH
Confidence 5566654 44567999999999999999998887654 4666788888877776 578889998887764
No 102
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=72.75 E-value=21 Score=34.99 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=52.5
Q ss_pred cEEEEEECC---e--EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHH
Q 029713 103 QIEIHEMGS---A--LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARI 175 (189)
Q Consensus 103 ~V~V~~~g~---~--v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l 175 (189)
-|+|...+. . +.|.|.+.. ++|+|.+|..++.+.++.|.++++.+. ++.+...|.+++.+- .....|
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~D-r~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~-----~~L~~l 725 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTAND-RSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL-----QVLGRV 725 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcC-CCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH-----HHHHHH
Confidence 367776432 2 456666654 456999999999999999999999765 466667777887653 455667
Q ss_pred HHHHHHH
Q 029713 176 SERLKKF 182 (189)
Q Consensus 176 ~~~L~~~ 182 (189)
..+|+++
T Consensus 726 ~~~L~~i 732 (743)
T PRK10872 726 LGKLNQV 732 (743)
T ss_pred HHHHhcC
Confidence 7777654
No 103
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=72.72 E-value=33 Score=33.23 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=52.2
Q ss_pred cEEEEEECC-----eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHH
Q 029713 103 QIEIHEMGS-----ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARIS 176 (189)
Q Consensus 103 ~V~V~~~g~-----~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~ 176 (189)
-|+|+...+ .+.|.|.+..+ +|+|.+|+.++-+.++.|.++++... ++.+...|.+++.+- .....|.
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr-~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~-----~~L~~ii 669 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDR-KGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY-----KHLLKIM 669 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecC-CCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH-----HHHHHHH
Confidence 366665432 34566666554 46899999999999999999999876 466667788887653 3455666
Q ss_pred HHHHHH
Q 029713 177 ERLKKF 182 (189)
Q Consensus 177 ~~L~~~ 182 (189)
.+|+++
T Consensus 670 ~~L~~i 675 (683)
T TIGR00691 670 LKIKTK 675 (683)
T ss_pred HHHhCC
Confidence 666543
No 104
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=72.53 E-value=32 Score=33.46 Aligned_cols=74 Identities=9% Similarity=-0.002 Sum_probs=52.1
Q ss_pred cEEEEEECC-----eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCCccHHHHH
Q 029713 103 QIEIHEMGS-----ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKQIGDSGSDHDASARIS 176 (189)
Q Consensus 103 ~V~V~~~g~-----~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~~l~ 176 (189)
-|+|+..+. .+.|.|.+..+ +|+|.+|+.++-+.++.|.++++.+.+ +.+...|.+++.+- .....|.
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr-~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~-----~~L~~i~ 685 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNH-QGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR-----VHLANIM 685 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCC-CCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH-----HHHHHHH
Confidence 367776432 34566666554 469999999999999999999987664 45566777777653 3556666
Q ss_pred HHHHHH
Q 029713 177 ERLKKF 182 (189)
Q Consensus 177 ~~L~~~ 182 (189)
..|+++
T Consensus 686 ~~Lr~i 691 (702)
T PRK11092 686 RKIRVM 691 (702)
T ss_pred HHHhCC
Confidence 666643
No 105
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=70.29 E-value=27 Score=24.73 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=42.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED--TIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~--~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
|.+.-. +.+|.|.++..+|-..|+.+-+.+++...+ ....||.+...+. ...+.+...|.|++
T Consensus 5 isvlVe-N~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~-----~~ieqI~kQL~Kli 69 (84)
T PRK13562 5 LKLQVA-DQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD-----TSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEE-CCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH-----HHHHHHHHHHhCCc
Confidence 444443 445799999999999999999999886544 4456666653222 34466777776654
No 106
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=69.65 E-value=25 Score=23.78 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=33.3
Q ss_pred cEEEEEECCeEEEEEEeCCCCc-----chHHHHHHHHHhCCCeEEEEEEEee
Q 029713 103 QIEIHEMGSALEVVLTTGLDFQ-----FMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 103 ~V~V~~~g~~v~I~i~c~~~~~-----~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
.|.++..++.+.|.|.+..+.- .-+..+-+.|...|+.+.+.++..-
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4566677889999998866511 2377888999999999999888643
No 107
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.96 E-value=17 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=44.6
Q ss_pred eCCCCcchHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEecCCC--CCCCccHHHHHHHHHHHhcc
Q 029713 119 TGLDFQFMFIETIRLLHEEGVEIVNASFN--VVEDTIFHTIHSKQIGDS--GSDHDASARISERLKKFGQD 185 (189)
Q Consensus 119 c~~~~~~~l~~il~~Le~l~L~V~~a~vs--~~~~~~~~ti~~k~~~~~--~~~~~~~~~l~~~L~~~i~~ 185 (189)
|++.+|-.|.++..||..++.-|-+|.+. ..+++---....-..+.. .+.+..-..+.+++.+.+.+
T Consensus 6 sGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 6 SGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred cCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHHhc
Confidence 77777778999999999999999999997 345555444344444432 00112255677777766554
No 108
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=68.14 E-value=23 Score=21.11 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEee
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
++.+.+++++|.+.++.|...+.+..
T Consensus 14 ~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 14 PGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45799999999999999987766543
No 109
>PRK11899 prephenate dehydratase; Provisional
Probab=67.99 E-value=33 Score=29.43 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.++|.|.++|.+|...|+......+-...+ ..-|.|.+.+.+. .+-..+.+.|.++
T Consensus 203 ~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~-----~~d~~v~~aL~~l 259 (279)
T PRK11899 203 NIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH-----PEDRNVALALEEL 259 (279)
T ss_pred CCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC-----CCCHHHHHHHHHH
Confidence 455789999999999999999999987754 4568888888764 3334556666554
No 110
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=66.75 E-value=41 Score=26.93 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=45.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+.+.-. +++|.|.+|...|-..|+++.+.++.. ..+..-.+|.+. +.. -..+.|.+.|.+++.
T Consensus 5 isvlv~-n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~----~~ieqL~kQL~KLid 69 (174)
T CHL00100 5 LSVLVE-DESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDD----RTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEe-CcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCH----HHHHHHHHHHHHHhH
Confidence 444443 456799999999999999999999976 444555666654 222 226888888888764
No 111
>PRK11898 prephenate dehydratase; Provisional
Probab=64.55 E-value=39 Score=28.92 Aligned_cols=47 Identities=6% Similarity=-0.034 Sum_probs=35.6
Q ss_pred EeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCC
Q 029713 118 TTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGD 164 (189)
Q Consensus 118 ~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~ 164 (189)
....+++|.|.++|..|...|+.+.+..+-...+ ..-|.|.+.+...
T Consensus 202 ~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 202 TLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 3333335689999999999999999999987544 4457887777653
No 112
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=63.76 E-value=45 Score=22.93 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
+.+|.|.+++.++..-|+.|-+.++... ++..-.+|.+. ++ -..+.|...|.|++
T Consensus 12 n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~~-----~~i~ql~kQL~KL~ 68 (76)
T PRK11152 12 FRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--SE-----RPIDLLSSQLNKLV 68 (76)
T ss_pred CCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--CC-----chHHHHHHHHhcCc
Confidence 4457899999999999999999999874 44555566663 22 45577777777764
No 113
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=62.33 E-value=36 Score=21.33 Aligned_cols=34 Identities=12% Similarity=-0.030 Sum_probs=24.5
Q ss_pred EEEEeCC--CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 029713 115 VVLTTGL--DFQFMFIETIRLLHEEGVEIVNASFNV 148 (189)
Q Consensus 115 I~i~c~~--~~~~~l~~il~~Le~l~L~V~~a~vs~ 148 (189)
|.+.+.. ..++.+.+++++|.+.|+.|.-.+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555431 234689999999999999997776544
No 114
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.37 E-value=34 Score=22.34 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 029713 15 IERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMK 67 (189)
Q Consensus 15 ~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~ 67 (189)
.=|.-|-.++..+..+..++- . .. .++|.+||+++-+.++...
T Consensus 15 ~lR~~RHD~~NhLqvI~gllq-l------g~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQ-L------GK---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T------T----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH-C------CC---HHHHHHHHHHHHHHHHHHH
Confidence 337778888888999999984 2 22 8999999999998888763
No 115
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.69 E-value=52 Score=21.36 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+||.|.+++++|.+ |.+|+..+....+ +.....+.+++.+. -...++.+.|++.
T Consensus 8 kPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~i~~~L~~~ 62 (68)
T cd04885 8 RPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR-----EDLAELKERLEAL 62 (68)
T ss_pred CCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH-----HHHHHHHHHHHHc
Confidence 34679999999999 9999999886532 23333344444432 3456777777663
No 116
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=56.13 E-value=67 Score=28.88 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=41.7
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.++|.|.++|.+|...|++.....+-...+. .-|.|.+.+.+. .+...+.+.|.++
T Consensus 306 ~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~-----~~d~~~~~aL~~l 362 (386)
T PRK10622 306 QQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN-----LRSAEMQKALKEL 362 (386)
T ss_pred CCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC-----CCCHHHHHHHHHH
Confidence 4557899999999999999999999876554 558999988764 3334455555443
No 117
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=54.28 E-value=16 Score=28.48 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=23.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcC
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIV 34 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~Lrsll 34 (189)
..|++.+..||+||.---..|.-||.+=
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477888999999999999999999863
No 118
>PRK08198 threonine dehydratase; Provisional
Probab=52.89 E-value=1.2e+02 Score=26.95 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=44.7
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-----EDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-----~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
.+.+.+.-+.+ +|.|.+++..+-+.|.+|++.+.... .+..-.++.+++.+. -..+.|.+.|++
T Consensus 327 ~~~l~v~l~D~-PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~l~~~L~~ 395 (404)
T PRK08198 327 YLKLRVRLPDR-PGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP-----EHIEEILDALRD 395 (404)
T ss_pred EEEEEEEeCCC-CCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH-----HHHHHHHHHHHH
Confidence 35666655544 46899999999999999999988742 356667777776432 244667777665
No 119
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.89 E-value=31 Score=23.68 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+..||+-|.-||-.|++|+.+...+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 78899999999999999998876554
No 120
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=50.25 E-value=4.7 Score=38.89 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRP--MEATSLPDQLDEATKYIKRLQTNLERMKERK 70 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~--~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~ 70 (189)
.++.+.|+.+|..||..+.-.|..|-++.-+..+ ..|.+....+...+.||..++.+...+.++-
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 4778999999999999999999999999876643 2344545559999999999887776666543
No 121
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=50.21 E-value=1.3e+02 Score=25.09 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCCc-chHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQ-FMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLK 180 (189)
Q Consensus 112 ~v~I~i~c~~~~~-~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~ 180 (189)
.+.+.+.|..... .....+++.|++.++.+.+.++...+ +.+.-+......... ....+.+..+|.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~---~~~le~iv~~L~ 210 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADY---RKTRELIISRIG 210 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCc---hhhHHHHHHHHh
Confidence 5678888976543 24688889999999999999997653 333333333222211 244555555554
No 122
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=48.38 E-value=1.3e+02 Score=26.07 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=45.4
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+.|+..+ |+...|-..|-++|..+++++-.....+-.+-..+....+. ...+.+.+.+.+..+
T Consensus 7 ~~~LtvsCpd~~-GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~--~~~~~~~l~~~f~~~ 74 (287)
T COG0788 7 TFILTVSCPDQP-GIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEG--GPLDREALRAAFAPL 74 (287)
T ss_pred ceEEEEecCCCC-CcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCC--CcccHHHHHHHHHHH
Confidence 456677787655 68999999999999999999877543233333344444433 126677777777654
No 123
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=46.74 E-value=1.8e+02 Score=25.52 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe-----eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV-----VEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~-----~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+.|.-+. ++|.|.++++.+.+.|.+|++..... ..+....+|.++..+. ...+.|.+.|++.
T Consensus 306 ~~l~v~l~D-~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~-----~~~~~i~~~L~~~ 374 (380)
T TIGR01127 306 VRIETVLPD-RPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK-----EHLDEILKILRDM 374 (380)
T ss_pred EEEEEEeCC-CCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH-----HHHHHHHHHHHHc
Confidence 455555444 45689999999999999999997762 1355666777775532 3445777777654
No 124
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.50 E-value=50 Score=22.52 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+..||+-|..||.++++|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999875544
No 125
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=43.90 E-value=1.3e+02 Score=25.91 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+|.|.++|..|...|++.....+-...+ ..-|.|.+.+.+.. +-..+.+.|.++
T Consensus 203 n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~-----~~~~v~~AL~el 259 (279)
T COG0077 203 NKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI-----DDPLVKEALEEL 259 (279)
T ss_pred CCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc-----CcHhHHHHHHHH
Confidence 455789999999999999999999986654 55588888876653 336666666655
No 126
>PRK06382 threonine dehydratase; Provisional
Probab=43.84 E-value=1.7e+02 Score=26.24 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=42.4
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEE----e-eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFN----V-VEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs----~-~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+.|.-.. ++|.|.++++.|.+++.+|++.... . ..+....+|.++..+. .....|.+.|++.
T Consensus 331 ~rl~v~v~D-~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~-----~~~~~v~~~L~~~ 399 (406)
T PRK06382 331 VRIECNIPD-RPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ-----DHLDRILNALREM 399 (406)
T ss_pred EEEEEEcCC-CCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH-----HHHHHHHHHHHHC
Confidence 445554333 4568999999999999999988764 2 2345666777776532 2334666666654
No 127
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.66 E-value=30 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 029713 15 IERNRRNQMKALYSTLNS 32 (189)
Q Consensus 15 ~ER~RR~~mn~~~~~Lrs 32 (189)
.=|+||++++..+..||+
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347899999999999885
No 128
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=43.55 E-value=1.2e+02 Score=21.88 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=42.7
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED--TIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~--~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
..|.+... +.+|.|.+|.-.|-.-|..+-+.+++..++ ....||.+. + . ...+.+...|.|++
T Consensus 9 ~tisvlv~-N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~----~~i~Qi~kQL~KLi 73 (96)
T PRK08178 9 VILELTVR-NHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-D----QRLEQMISQIEKLE 73 (96)
T ss_pred EEEEEEEE-CCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-c----hHHHHHHHHHhCCc
Confidence 44555554 445799999999999999998888876544 444566553 2 2 34566777776654
No 129
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=42.71 E-value=1.1e+02 Score=23.28 Aligned_cols=42 Identities=12% Similarity=0.004 Sum_probs=32.6
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEE
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHT 156 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~t 156 (189)
+|.++-..++ |.|..++.+|.+.|+.+-.-++.-.+++-+.-
T Consensus 5 QISvFlENk~-GRL~~~~~~L~eagINiRA~tiAdt~dFGIiR 46 (142)
T COG4747 5 QISVFLENKP-GRLASVANKLKEAGINIRAFTIADTGDFGIIR 46 (142)
T ss_pred EEEEEecCCc-chHHHHHHHHHHcCCceEEEEeccccCcceEE
Confidence 4666665554 58999999999999999998888777655443
No 130
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.64 E-value=74 Score=19.01 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEE
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHS 159 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~ 159 (189)
..++.+.+++.+|.+.|+.+...+.+.. ++....+|.+
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v 48 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV 48 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence 3446899999999999999987766432 2333444444
No 131
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=42.45 E-value=1.2e+02 Score=22.84 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 126 MFIETIRLLHEEGVEIVNASFN-VVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 126 ~l~~il~~Le~l~L~V~~a~vs-~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
-+-.++.+|.+.|++|....=- -++.--++.+|.... -++..++.+++++++
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~-------gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV-------GDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec-------CCHHHHHHHHHHHHh
Confidence 3788999999999999988754 556666677777643 456899999998875
No 132
>PF14992 TMCO5: TMCO5 family
Probab=42.08 E-value=44 Score=28.87 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=26.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 43 TSLPDQLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 43 ~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
.++..+..+++.||++||+.++.++.+++.+
T Consensus 140 ~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 140 QQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555668899999999999999999988764
No 133
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=41.30 E-value=80 Score=19.03 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEe
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNV 148 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~ 148 (189)
++.+.+++++|.+.++.|.....+.
T Consensus 14 ~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 14 PGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3579999999999999998887654
No 134
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.00 E-value=59 Score=22.76 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+..||+-|--||-+|++|+.+...+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998876654
No 135
>PLN02317 arogenate dehydratase
Probab=40.65 E-value=1.7e+02 Score=26.37 Aligned_cols=42 Identities=0% Similarity=-0.096 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCCe---------------EEEEEEEEecCC
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDT---------------IFHTIHSKQIGD 164 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~~---------------~~~ti~~k~~~~ 164 (189)
.+|.|.++|.+|...++.+....+-..-+. .-|.|.+.+...
T Consensus 293 ~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 293 GPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred CCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 457899999999999999999998765443 447877777653
No 136
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=40.23 E-value=2.4e+02 Score=28.79 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCcEEEEEEC-CeEEEEEEe---CCC-CcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHH
Q 029713 101 SPQIEIHEMG-SALEVVLTT---GLD-FQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASAR 174 (189)
Q Consensus 101 ~~~V~V~~~g-~~v~I~i~c---~~~-~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~ 174 (189)
.|.+++...+ +.-.+++.- ..+ ..+.|+.+.+++.-+||.+..+-+-++ +|..+|+|-++-.... ...-..
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~---~~~~~~ 292 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD---DNPDLS 292 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC---Cccccc
Confidence 5667887665 333334433 112 226899999999999999999999887 7778899999865443 122346
Q ss_pred HHHHHHH
Q 029713 175 ISERLKK 181 (189)
Q Consensus 175 l~~~L~~ 181 (189)
+.+++++
T Consensus 293 ~~~~~~~ 299 (1002)
T PTZ00324 293 IEDRASL 299 (1002)
T ss_pred HHHHHHh
Confidence 6777776
No 137
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.87 E-value=95 Score=19.45 Aligned_cols=27 Identities=15% Similarity=-0.010 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeC
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVE 150 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~ 150 (189)
++.+.+++++|.+.|++|.-...+..+
T Consensus 15 ~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 15 IGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred cCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 467999999999999999776654433
No 138
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=39.86 E-value=1.2e+02 Score=27.89 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVE-DTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~-~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
.+|.|.++|++|..+|+.+.+..+-... ...-|.|.+.+.... ......+-+.|++
T Consensus 26 ~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~---~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 26 EAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS---DRKLEGVIEHLRQ 82 (436)
T ss_pred CCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc---cHHHHHHHHHHHH
Confidence 4568999999999999999999997643 344578888876432 1233444455544
No 139
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.52 E-value=1.3e+02 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=30.9
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 41 EATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 41 ~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
.+.++..+|.++-+-.+.|+..+.+|.++..++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888999999999999999999998877764
No 140
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=39.48 E-value=97 Score=19.45 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=25.6
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEE
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSK 160 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k 160 (189)
..++.+.+++.+|.+.|+.|.....+...+ ....+|.+.
T Consensus 11 ~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 11 DKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 344689999999999999997554432222 334445544
No 141
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=38.45 E-value=1.2e+02 Score=28.25 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=32.7
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEE-EEEEEEecCC
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVED-TIF-HTIHSKQIGD 164 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~-~ti~~k~~~~ 164 (189)
.+|.|.++|+.|+..|+.+.+..+-...+ ..- |.|.+.+...
T Consensus 41 ~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 41 VVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred CchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 45679999999999999999999976543 334 7777777643
No 142
>smart00338 BRLZ basic region leucin zipper.
Probab=38.35 E-value=50 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029713 53 TKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
-.|+..|+.+++.|+.+.+.|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887776664
No 143
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.28 E-value=98 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFN 147 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs 147 (189)
++.+.+++.+|.+.++.|...+.+
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 14 PGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEcc
Confidence 467999999999999999877643
No 144
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.94 E-value=57 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029713 53 TKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
..||..|+.++..|+.+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887766554
No 145
>PRK14638 hypothetical protein; Provisional
Probab=36.92 E-value=1.9e+02 Score=22.32 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=36.5
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 130 il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+-.+++.+|++++.+.+...++..+..+.+.-.++.+ +-.++..+...|..++.
T Consensus 14 ~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v-~lddC~~vSr~is~~LD 67 (150)
T PRK14638 14 AERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYV-SVRDCELFSREIERFLD 67 (150)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCc-CHHHHHHHHHHHHHHhc
Confidence 3345689999999999998776655555554333322 12377788888877765
No 146
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.00 E-value=1.2e+02 Score=19.45 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHT 156 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~t 156 (189)
++.+.+++.+|.+.|+.|.-.+.++.+-.+.+.
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~ 46 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQGASKVNISLI 46 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCccceEEEE
Confidence 357999999999999999877766655444333
No 147
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.20 E-value=1.4e+02 Score=20.04 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=20.4
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEE
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASF 146 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~v 146 (189)
.++.+.+|+.+|.++|+.|-....
T Consensus 14 ~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 14 AQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CcCHHHHHHHHHHHcCCcEEEEee
Confidence 346899999999999999988854
No 148
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=35.11 E-value=1.1e+02 Score=18.98 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHS 159 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~ 159 (189)
++...+++++|++.|+.|..... ..+.+.+++..
T Consensus 14 ~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~ 47 (62)
T cd04890 14 VGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDD 47 (62)
T ss_pred cCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEeh
Confidence 35799999999999999998854 33444444443
No 149
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=33.37 E-value=1.4e+02 Score=19.65 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHH
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLK 180 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~ 180 (189)
..++++.+.+ ...+.++++++...++..+=.+.+.+.+.. ...+...+.|+
T Consensus 17 piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~----~~~~~a~~~L~ 67 (76)
T PF09383_consen 17 PIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGDD----EEIEKAIAYLR 67 (76)
T ss_dssp CHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES-H----HHHHHHHHHHH
T ss_pred hHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECCH----HHHHHHHHHHH
Confidence 4666666665 467889999999999999999999886543 33344444444
No 150
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.33 E-value=1.6e+02 Score=20.29 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 21 NQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 21 ~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
..++.+|...|++|-..+-.++ .+.+--.+|+.|+++++...+-...+.
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi~~-----s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGIDR-----SVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777744433322 277777888888888887776555443
No 151
>PRK14639 hypothetical protein; Provisional
Probab=32.26 E-value=2.3e+02 Score=21.65 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 130 il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+-.+++++|++++.+.+...++..+..|...-.++ + +=.+++.+.+.|-.++.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v-~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-V-NLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-C-CHHHHHHHHHHHHHHhc
Confidence 34578899999999999988887666666653222 2 12367778888876664
No 152
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.47 E-value=82 Score=16.82 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029713 56 IKRLQTNLERMKERKER 72 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~ 72 (189)
|..|+.+|.+|+.+...
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888877654
No 153
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=31.04 E-value=1.4e+02 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.6
Q ss_pred CcchHHHHHHHHHhCCCeEEEE
Q 029713 123 FQFMFIETIRLLHEEGVEIVNA 144 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a 144 (189)
.++.+.+++.+|.+.|+.|...
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEE
Confidence 4468999999999999999633
No 154
>PRK06635 aspartate kinase; Reviewed
Probab=29.50 E-value=2.6e+02 Score=24.71 Aligned_cols=51 Identities=18% Similarity=0.048 Sum_probs=35.0
Q ss_pred CCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEE
Q 029713 110 GSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSK 160 (189)
Q Consensus 110 g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k 160 (189)
.+-..|.+.+-...++.+.+++.+|.+.|+.|...+.+...+ ..-++|.+.
T Consensus 260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 445567766533455789999999999999999876654332 445555543
No 155
>PRK08526 threonine dehydratase; Provisional
Probab=29.03 E-value=4.3e+02 Score=23.74 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=43.9
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCC-----eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVED-----TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-----~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
+.+.+.-+.+ ||.|.+++..+-+.+.+|+......... .+...+.+++.+. -..+.|.+.|++.
T Consensus 327 ~~~~~~~~d~-pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~-----~~~~~~~~~l~~~ 395 (403)
T PRK08526 327 MKLHVTLVDK-PGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK-----EHQEEIRKILTEK 395 (403)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH-----HHHHHHHHHHHHC
Confidence 5555554444 4689999999999999999999865433 3555566665542 3456777777654
No 156
>PRK14644 hypothetical protein; Provisional
Probab=28.52 E-value=2.5e+02 Score=21.44 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 132 RLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 132 ~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+++++|++++.+.+..-++..+..+... ...+ .+|+.+.+.|..++.
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Id--k~~i---ddC~~vSr~is~~LD 53 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILN--SRDL---KDIEELTKEISDFID 53 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEEC--CCCH---HHHHHHHHHHHHHhc
Confidence 46789999999999998777665555552 2233 688999999988765
No 157
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.38 E-value=1.6e+02 Score=23.05 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHHHHH-HHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 127 FIETIR-LLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 127 l~~il~-~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+..+++ +++.+|++++.+.+...+..-...|.+.=. +.+ +=-+++++.+.+-.++.
T Consensus 10 v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v-~lddC~~vSr~is~~LD 66 (153)
T COG0779 10 VTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGV-TLDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCC-CHHHHHHHHHHHHHHhc
Confidence 334444 458999999999999988654444444322 221 11367788888877765
No 158
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=28.35 E-value=1.4e+02 Score=25.36 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Q 029713 20 RNQMKALYSTLNSIVPHQRPMEATSLPDQLDEAT------------------KYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 20 R~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai------------------~yI~~Lq~~v~~L~~~~~~~ 73 (189)
|..|..+|..|+..=.. ++|. .-...|.+.| .=|+.++.+|++|+.+..+.
T Consensus 6 ~qLI~~lf~RL~~ae~~--prD~-eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ--PRDP-EAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC--CCCH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66899999999987654 2221 0011122222 12678899999999887654
No 159
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=27.77 E-value=1.6e+02 Score=18.45 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 48 QLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 48 ~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
--+.+-++|..|..++..+.++.+.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999988887765
No 160
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.76 E-value=1.6e+02 Score=19.52 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
|.+|=...+.|+.+|+.|+.+.+++.
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887754
No 161
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=27.22 E-value=3e+02 Score=25.24 Aligned_cols=61 Identities=7% Similarity=-0.060 Sum_probs=40.5
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhcc
Q 029713 121 LDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQD 185 (189)
Q Consensus 121 ~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~ 185 (189)
+...+-|.++|.++++.++.|.+...... -...-|-+-+++.... -....+.+.|++-...
T Consensus 44 r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~----~~l~~~i~~lrq~~~~ 105 (461)
T KOG3820|consen 44 RNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATR----GQLIQAIELLRQNHVA 105 (461)
T ss_pred cccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccch----hhHHHHHHHHHHhccc
Confidence 33345799999999999999999998644 2223366666665544 3455666666655433
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.88 E-value=3e+02 Score=21.27 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
..+....|.+|++++..|+.+.+.+..
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999888764
No 163
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=26.63 E-value=1.6e+02 Score=19.90 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccCCCC
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSAF 189 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~~~~ 189 (189)
..+.|.|+.. .+.+|+..|...+-.|+... ..++..+..|.+.+ +. .+.-.+...|+.+..|...|
T Consensus 4 ~~~ei~~p~~---~~g~v~~~L~~rrg~i~~~~--~~~~~~~~~i~a~v--P~----~e~~~~~~~Lrs~T~G~~~~ 69 (80)
T cd04098 4 YEVEITCPAD---AVSAVYEVLSRRRGHVIYDT--PIPGTPLYEVKAFI--PV----IESFGFETDLRVHTQGQAFC 69 (80)
T ss_pred EEEEEEECHH---HHhHHHHHHhhCCcEEeeee--ccCCCCcEEEEEEC--CH----HHHhChHHHHHhhCCCceEE
Confidence 3466677542 47899999999999998755 34455445666664 32 55567888899888876543
No 164
>PRK14637 hypothetical protein; Provisional
Probab=26.56 E-value=3.1e+02 Score=21.28 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
|....+-.+++++|++++...+...++.....|.+-- ++.+ +-.+++.+.+.|-.++.
T Consensus 9 ~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~gV-~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 9 GYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGGV-GLDDCARVHRILVPRLE 66 (151)
T ss_pred cHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCCC-CHHHHHHHHHHHHHHhc
Confidence 4577777889999999999999988776555555542 2222 12366777777766653
No 165
>PRK06291 aspartate kinase; Provisional
Probab=26.34 E-value=3.4e+02 Score=24.75 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred eEEEEEEeCC--CCcchHHHHHHHHHhCCCeEEEEEEEeeCCeE
Q 029713 112 ALEVVLTTGL--DFQFMFIETIRLLHEEGVEIVNASFNVVEDTI 153 (189)
Q Consensus 112 ~v~I~i~c~~--~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~ 153 (189)
-..|.+.... ..++.+.+++.+|.++|+.|.-.+-++.+..+
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI 364 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI 364 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE
Confidence 4556665432 23468999999999999999877654444333
No 166
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.91 E-value=1.7e+02 Score=18.07 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEe
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNV 148 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~ 148 (189)
++.+.+++.+|.+.|++|.-.+.+.
T Consensus 15 ~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 15 VGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4679999999999999997776544
No 167
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=25.66 E-value=3.4e+02 Score=26.65 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=48.8
Q ss_pred cEEEEEECC---e--EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEecCCCCCCCccHHHHH
Q 029713 103 QIEIHEMGS---A--LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSKQIGDSGSDHDASARIS 176 (189)
Q Consensus 103 ~V~V~~~g~---~--v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k~~~~~~~~~~~~~~l~ 176 (189)
-|.|....+ . +.|.|.-. .++|+|.+|+++|-+.+..|.+++.... ++.....|..++.+- .....|.
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~-~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~-----~~L~~i~ 686 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAY-DRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL-----NHLGRVL 686 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEc-cccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH-----HHHHHHH
Confidence 466654332 3 44544443 4457999999999999999999999876 444445666666543 4455666
Q ss_pred HHHHHH
Q 029713 177 ERLKKF 182 (189)
Q Consensus 177 ~~L~~~ 182 (189)
.+|+++
T Consensus 687 ~~l~~~ 692 (701)
T COG0317 687 ARLKQL 692 (701)
T ss_pred HHHhcC
Confidence 666543
No 168
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.66 E-value=1.9e+02 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeC
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVE 150 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~ 150 (189)
++.+.+++++|.+.|++|...+.+..+
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 357999999999999999777766543
No 169
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=25.31 E-value=2.3e+02 Score=19.37 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=43.4
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccCCC
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSA 188 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~~~ 188 (189)
..+.|.|+. . .+.+|+..|...+-.|.+.... .++.+. |.+.+-- .....+...|+.+..|.+.
T Consensus 7 ~~~~I~~p~--~-~~g~v~~~l~~r~g~i~~~~~~-~~~~~~--i~~~iP~------~~~~gf~~~Lr~~T~G~a~ 70 (89)
T PF00679_consen 7 MSVEISVPE--E-YLGKVISDLSKRRGEILSMDPI-GGDRVV--IEAEIPV------RELFGFRSELRSLTSGRAS 70 (89)
T ss_dssp EEEEEEEEG--G-GHHHHHHHHHHTT-EEEEEEEE-STTEEE--EEEEEEG------GGHTTHHHHHHHHTTTS-E
T ss_pred EEEEEEECH--H-HHHHHHHHhcccccEEEechhh-hhhhee--EEEEECh------hhhhhHHHHhhccCCCEEE
Confidence 346666753 2 5999999999999999999888 445444 4444322 3445788999999888764
No 170
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=25.28 E-value=1.7e+02 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHhCCCeEEEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASF 146 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~v 146 (189)
++.+.+++.+|.+.++.|...+.
T Consensus 14 ~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 14 PGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEc
Confidence 46799999999999999987764
No 171
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.04 E-value=1.6e+02 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.371 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
|..+-+-|-++|.++++|+.++.+++.
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999998887764
No 172
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=24.41 E-value=2.2e+02 Score=18.76 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHHhCCCeEEEEE
Q 029713 123 FQFMFIETIRLLHEEGVEIVNAS 145 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~ 145 (189)
.++.+.+++++|.+.|+.|....
T Consensus 14 ~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 14 AHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CccHHHHHHHHHHHcCCeEEEEE
Confidence 34679999999999999997775
No 173
>PRK14645 hypothetical protein; Provisional
Probab=24.25 E-value=3.5e+02 Score=21.08 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEec-CCCCCCCccHHHHHHHHHHHhc
Q 029713 129 ETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQI-GDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 129 ~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~-~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
-+-.+++++|++++.+.+...++..+..+.+.-. ++.+ +=.++..+.+.|-.++.
T Consensus 14 li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v-~lddC~~vSr~is~~LD 69 (154)
T PRK14645 14 LAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPV-TVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCc-CHHHHHHHHHHHHHHhc
Confidence 3345668999999999999877655555555422 2222 11367778888877765
No 174
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon. It is found C-terminal to IPR006133 from INTERPRO and IPR006134 from INTERPRO. ; GO: 0003887 DNA-directed DNA polymerase activity, 0008270 zinc ion binding, 0006260 DNA replication, 0005634 nucleus
Probab=23.89 E-value=1.8e+02 Score=26.21 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccCCCC
Q 029713 127 FIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGSAF 189 (189)
Q Consensus 127 l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~~~~ 189 (189)
|..++..|+.+|..|+.|+.+. |.+......+ -++....+-|.+.++.+..|
T Consensus 320 flqLl~Ef~rlG~~VVyA~~~r--------iil~T~K~~~---~~A~ay~~yi~~~i~~~~lF 371 (396)
T PF08490_consen 320 FLQLLAEFRRLGSKVVYADFNR--------IILCTGKTSL---ENAYAYVQYILKSIRSRELF 371 (396)
T ss_pred HHHHHHHHHHcCCEEEEEcCCE--------EEEECCCCCH---HHHHHHHHHHHHHHhccccc
Confidence 7788899999999999999653 3444444443 56778888888888877665
No 175
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=23.47 E-value=1.1e+02 Score=21.05 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=41.2
Q ss_pred CcchHHHHHHHHHhCCCeEEEEEEEeeCCe---------EEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 123 FQFMFIETIRLLHEEGVEIVNASFNVVEDT---------IFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 123 ~~~~l~~il~~Le~l~L~V~~a~vs~~~~~---------~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
..+.+..|-.+|-++|+.|.+.+- ..+. -.+++...+..+. .+.+.++..|.++-.
T Consensus 10 ~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~----~~~~~lr~~L~~la~ 74 (84)
T cd04871 10 TAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP----ADLEALRAALLELAS 74 (84)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC----CCHHHHHHHHHHHhc
Confidence 446899999999999998877664 2222 2567777777554 788999999887643
No 176
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.20 E-value=1.9e+02 Score=19.46 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 46 PDQLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 46 ~~~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
...|++|..-+.+|+.+++.|..+.+..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4449999999999999999999876553
No 177
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=23.17 E-value=2.8e+02 Score=19.59 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=42.7
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.+.-..+ |+.|.++|.+.+--|+-|...+.++. ++..-..|.+. ..+ ..+-|...|.|+.
T Consensus 5 qldl~ar~~-pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~--s~R-----~~~lL~~QLeKl~ 68 (86)
T COG3978 5 QLDLSARFN-PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD--SDR-----SVDLLTSQLEKLY 68 (86)
T ss_pred EEeeeccCC-hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc--CCC-----ChHHHHHHHHHHc
Confidence 344444444 46899999999999999999999876 55555555554 332 3466777777764
No 178
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.95 E-value=1.9e+02 Score=17.72 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSK 160 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k 160 (189)
++.+.+++++|.+.|+.|.-.+.+..+ .-.+|.+.
T Consensus 15 ~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 15 PGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 357999999999999999766654433 22344444
No 179
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=22.92 E-value=2.4e+02 Score=18.77 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHhCCCeEEEEEE
Q 029713 124 QFMFIETIRLLHEEGVEIVNASF 146 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~v 146 (189)
++.+.+|+++|.++|+.|-....
T Consensus 15 ~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 15 HGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEe
Confidence 46899999999999999888754
No 180
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=22.61 E-value=5.1e+02 Score=23.31 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=28.5
Q ss_pred CCeEEEEEEeCCCC-cchHHHHHHHHHhCCCeEEEEEEEeeC
Q 029713 110 GSALEVVLTTGLDF-QFMFIETIRLLHEEGVEIVNASFNVVE 150 (189)
Q Consensus 110 g~~v~I~i~c~~~~-~~~l~~il~~Le~l~L~V~~a~vs~~~ 150 (189)
.+-..|.+....-. ++.+.+++++|.++|+.|....-++.+
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se 341 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE 341 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 44556776543333 467999999999999999887633333
No 181
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=22.59 E-value=2e+02 Score=18.51 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=24.4
Q ss_pred EEEEEEeC-C--CCcchHHHHHHHHHhCCCeEEEEE
Q 029713 113 LEVVLTTG-L--DFQFMFIETIRLLHEEGVEIVNAS 145 (189)
Q Consensus 113 v~I~i~c~-~--~~~~~l~~il~~Le~l~L~V~~a~ 145 (189)
..|.|... . ..+|.+.+++.+|-+.|+.|...+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34555554 2 245799999999999999998887
No 182
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=22.28 E-value=1.9e+02 Score=23.06 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCC
Q 029713 126 MFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDS 165 (189)
Q Consensus 126 ~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~ 165 (189)
....=++-|.++|++|-...+.+.++-.-..|..++.+..
T Consensus 20 ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~g 59 (165)
T PF13224_consen 20 RIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDAG 59 (165)
T ss_pred HHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCCc
Confidence 4566788899999999999999988888888888887653
No 183
>PRK14633 hypothetical protein; Provisional
Probab=22.01 E-value=3.8e+02 Score=20.68 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 130 TIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 130 il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+-.+++++|++++...+...++. +..+.+.- ++.+ +=.+|..+...|-.++.
T Consensus 10 v~p~~~~~G~eL~dve~~~~~~~-~lrV~ID~-~~Gv-~lddC~~vSr~i~~~LD 61 (150)
T PRK14633 10 VEPITADLGYILWGIEVVGSGKL-TIRIFIDH-ENGV-SVDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCc-EEEEEEeC-CCCC-CHHHHHHHHHHHHHHhc
Confidence 44567899999999999876653 33333331 1222 11367778888877665
No 184
>PRK14626 hypothetical protein; Provisional
Probab=21.80 E-value=3.3e+02 Score=19.98 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+.+-+.-.+++|++.++++++....
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666777888888887765543
No 185
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=21.61 E-value=1.1e+02 Score=27.31 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 48 QLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 48 ~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
.+++.++|.+.|+++++.++..+...
T Consensus 140 r~n~l~eY~q~Laek~Ek~e~drkK~ 165 (449)
T KOG3896|consen 140 RLNELTEYMQRLAEKIEKAEKDRKKG 165 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 39999999999999999998766553
No 186
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=21.60 E-value=1.8e+02 Score=20.06 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHH-HHHHHHH
Q 029713 22 QMKALYSTLNSIVPHQRPMEATSLPDQLDEATK-YIKRLQT 61 (189)
Q Consensus 22 ~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~-yI~~Lq~ 61 (189)
.|.+++..|.+-+ ...|+.. |.+||+ ||.+++.
T Consensus 15 E~~eRL~~Ls~~t----grtkayy---vrEaIE~~ieemED 48 (80)
T COG4710 15 ELKERLDNLSKNT----GRTKAYY---VREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHHhc----CCchhHH---HHHHHHHHHHHHHH
Confidence 3555666666533 2345666 999996 6665543
No 187
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=21.39 E-value=2.4e+02 Score=21.48 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 029713 41 EATSLPDQLDEATKYIKRLQTNLERMKER 69 (189)
Q Consensus 41 ~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~ 69 (189)
.-.+..++|.+||+-+..+|.+-+.+...
T Consensus 54 ~~~sF~d~Lk~Al~~VN~~Q~~Ad~~~~~ 82 (127)
T PRK12729 54 VAESFSEAMKNALTSVNDLQVEADELTQK 82 (127)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999998888654
No 188
>PRK14641 hypothetical protein; Provisional
Probab=21.30 E-value=4.3e+02 Score=21.05 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred HhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 135 HEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 135 e~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
+.+|++++.+.+...++..+..+.+.- ++.+ +=.+|..+.+.|-.++.
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~-~~gv-~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDA-DTGI-RIDQCAFFSRRIRERLE 67 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeC-CCCC-CHHHHHHHHHHHHHHhC
Confidence 489999999999987776555666552 2222 11366777888877765
No 189
>KOG3852 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=1.2e+02 Score=27.05 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHH
Q 029713 26 LYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRL 59 (189)
Q Consensus 26 ~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~L 59 (189)
-|..|..++|..-.+.|.+ +.+|.|| ||++|
T Consensus 144 Vl~clldflP~~v~keKis-p~tlKda--YvqKl 174 (426)
T KOG3852|consen 144 VLDCLLDFLPEGVNKEKIS-PLTLKDA--YVQKL 174 (426)
T ss_pred HHHHHHHhCcccccccccC-hhHHHHH--HHHHH
Confidence 4788999999888888888 5667776 66554
No 190
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=21.02 E-value=1.1e+02 Score=18.06 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 029713 54 KYIKRLQTNLERM 66 (189)
Q Consensus 54 ~yI~~Lq~~v~~L 66 (189)
+||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5888888887765
No 191
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=20.87 E-value=1.9e+02 Score=26.80 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCChhhhHHHHHHHHHHH------HHHHHHHHHHHHH
Q 029713 14 TIERNRRNQMKALYSTLNSIV-PHQRPMEATSLPDQLDEATKYIKRL------QTNLERMKERKER 72 (189)
Q Consensus 14 ~~ER~RR~~mn~~~~~Lrsll-P~~~~~~k~s~~~~l~~ai~yI~~L------q~~v~~L~~~~~~ 72 (189)
..|-| |+.++..|+.|.|++ |...+..|..+ =.+-++||-+| +++++.+.++.++
T Consensus 358 ~~e~~-~~~~~~~~s~l~s~~m~~~~~~~k~~I---tkEeVkKLAkLARLeLSEEElEkl~~dLn~ 419 (477)
T PRK12821 358 LSETQ-TKGIKKSFSDLQSPLFPKHWTSKKQQL---NKDELKKLARLVMFDLDDAELEKLQVEFKD 419 (477)
T ss_pred HHHHh-hhhhhhhhhhhcChhhhhhhccccccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35555 788999999999987 76666666666 66777777776 4555555554443
No 192
>PRK14625 hypothetical protein; Provisional
Probab=20.50 E-value=3.6e+02 Score=19.86 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+.+...-.+++|++.++++++....
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~ 28 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAET 28 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666677888888777765443
No 193
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=20.41 E-value=3.3e+02 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 49 LDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
+.+-=.-.+.|++.|..|+++.+.|+.
T Consensus 5 ~qEDEqKtR~LEesI~RLEkEIe~LE~ 31 (278)
T PF03285_consen 5 MQEDEQKTRSLEESIHRLEKEIEALEN 31 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445678899999999999888875
No 194
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.29 E-value=2.8e+02 Score=18.50 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 124 QFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 124 ~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
++.+.+++++|.+.|+.|-.... ..+. .+|.+.-...++ ++.....|...|++
T Consensus 15 ~g~~~~IF~~La~~~I~vDmI~~--s~~~--isftv~~~~~~~-~~~~~~~l~~el~~ 67 (75)
T cd04935 15 VGFLADVFAPFKKHGVSVDLVST--SETN--VTVSLDPDPNGL-DPDVLDALLDDLNQ 67 (75)
T ss_pred cCHHHHHHHHHHHcCCcEEEEEe--CCCE--EEEEEeCccccc-chHHHHHHHHHHHh
Confidence 46799999999999999988854 2233 444444333211 01123455555554
No 195
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.19 E-value=2.6e+02 Score=27.30 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=46.7
Q ss_pred ECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhcc
Q 029713 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQD 185 (189)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~ 185 (189)
.|.-++|+ ... +.|+|..|+.+|. ||..+.+++.|.+++-.|.+. + +.+-..+...+..++-+
T Consensus 630 ~~~~~e~r--~~d-r~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~----~~~r~~~~~~~~~~~~~ 692 (693)
T PRK00227 630 HGNILEVR--TED-RRGALGALLGVLP----DLLWITASTPGATMIVQAALK---P----GFDRATVERDVTRVLAG 692 (693)
T ss_pred eCcEEEEE--eCc-cccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---C----cccHHHHHHHHHHHHhc
Confidence 34334444 443 4568999999999 999999999999999888887 2 25567788877776543
No 196
>PRK14647 hypothetical protein; Provisional
Probab=20.14 E-value=4.2e+02 Score=20.55 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 131 IRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 131 l~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
-.+++.+|++++.+.+...++..+..|.+.-. +.+ .=.++..+...|-.++.
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~-~gv-slddC~~vSr~is~~LD 66 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFIDKE-GGV-NLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEEeCC-CCC-CHHHHHHHHHHHHHHHc
Confidence 44578999999999999877755555554322 222 11366777777777665
No 197
>PRK14623 hypothetical protein; Provisional
Probab=20.05 E-value=3.6e+02 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+.+...-.+++|++.++++++....
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~ 27 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTV 27 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666778888888887765443
Done!