Query 029713
Match_columns 189
No_of_seqs 142 out of 1094
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlw_A MAD protein, MAX dimeri 99.7 1.7E-16 5.8E-21 110.8 9.5 67 8-74 1-67 (80)
2 1am9_A Srebp-1A, protein (ster 99.7 5.8E-17 2E-21 113.7 6.2 66 7-75 5-71 (82)
3 1nkp_A C-MYC, MYC proto-oncoge 99.6 7.2E-16 2.5E-20 109.5 8.2 67 8-74 6-72 (88)
4 1nkp_B MAX protein, MYC proto- 99.6 7.5E-16 2.6E-20 108.1 7.9 66 8-74 2-67 (83)
5 1hlo_A Protein (transcription 99.6 5.8E-16 2E-20 108.0 7.2 67 7-74 11-77 (80)
6 4h10_B Circadian locomoter out 99.6 8E-16 2.7E-20 104.8 4.0 64 1-67 1-65 (71)
7 1a0a_A BHLH, protein (phosphat 99.6 4.8E-16 1.6E-20 103.8 2.3 56 8-63 2-61 (63)
8 2ql2_B Neurod1, neurogenic dif 99.6 6.8E-15 2.3E-19 97.2 6.6 58 7-64 1-58 (60)
9 1an4_A Protein (upstream stimu 99.6 1.5E-15 5.2E-20 101.8 3.2 55 6-63 3-63 (65)
10 3u5v_A Protein MAX, transcript 99.6 1.2E-15 3.9E-20 105.5 2.6 62 6-67 3-65 (76)
11 4ati_A MITF, microphthalmia-as 99.5 2.8E-14 9.7E-19 106.4 7.7 64 6-69 25-89 (118)
12 1mdy_A Protein (MYOD BHLH doma 99.4 7.3E-14 2.5E-18 94.4 4.9 57 7-64 11-67 (68)
13 4h10_A ARYL hydrocarbon recept 99.4 1.5E-14 5.1E-19 99.2 1.1 54 5-61 6-63 (73)
14 2lfh_A DNA-binding protein inh 99.1 7.3E-12 2.5E-16 84.0 1.2 52 10-61 16-67 (68)
15 4f3l_A Mclock, circadian locom 99.0 2.3E-10 8E-15 98.9 4.2 56 4-62 8-64 (361)
16 4aya_A DNA-binding protein inh 98.8 1E-08 3.5E-13 73.3 6.7 52 14-65 31-82 (97)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.2E-09 7.6E-14 93.8 3.7 56 4-62 9-68 (387)
18 4ath_A MITF, microphthalmia-as 98.3 1.6E-06 5.6E-11 60.1 7.5 51 20-70 4-55 (83)
19 1zpv_A ACT domain protein; str 96.9 0.024 8.2E-07 38.4 11.4 66 112-183 5-70 (91)
20 1u8s_A Glycine cleavage system 95.3 0.097 3.3E-06 40.6 8.8 65 112-183 6-70 (192)
21 2nyi_A Unknown protein; protei 95.1 0.11 3.6E-06 40.7 8.6 50 112-162 5-54 (195)
22 2ko1_A CTR148A, GTP pyrophosph 94.9 0.13 4.5E-06 34.1 7.5 63 113-181 6-68 (88)
23 1u8s_A Glycine cleavage system 94.0 0.48 1.6E-05 36.5 9.8 69 112-184 93-167 (192)
24 2nyi_A Unknown protein; protei 93.6 0.41 1.4E-05 37.3 8.8 65 112-183 93-163 (195)
25 3p96_A Phosphoserine phosphata 90.3 1 3.6E-05 38.5 8.3 66 112-182 12-77 (415)
26 3o1l_A Formyltetrahydrofolate 89.6 3.1 0.00011 34.9 10.4 66 112-182 22-89 (302)
27 3n0v_A Formyltetrahydrofolate 89.5 2.8 9.6E-05 34.8 10.0 66 112-183 8-75 (286)
28 3obi_A Formyltetrahydrofolate 88.3 4.6 0.00016 33.6 10.5 66 112-182 6-73 (288)
29 2f1f_A Acetolactate synthase i 86.5 2.1 7.2E-05 32.8 6.9 63 114-183 5-69 (164)
30 3lou_A Formyltetrahydrofolate 86.1 5.2 0.00018 33.3 9.6 68 112-182 10-79 (292)
31 3nrb_A Formyltetrahydrofolate 85.0 5.1 0.00017 33.3 9.0 65 112-183 7-73 (287)
32 2pc6_A Probable acetolactate s 83.1 2.4 8.1E-05 32.6 5.7 63 114-183 6-70 (165)
33 3he4_B Synzip5; heterodimeric 82.4 2.2 7.4E-05 25.0 4.0 27 48-74 4-30 (46)
34 2fgc_A Acetolactate synthase, 80.1 6.3 0.00022 31.0 7.3 65 113-184 30-96 (193)
35 2jhe_A Transcription regulator 76.4 12 0.0004 27.3 7.7 35 114-149 2-36 (190)
36 2l5g_A GPS2 protein, G protein 75.7 6.1 0.00021 22.8 4.4 26 48-73 9-34 (38)
37 1y7p_A Hypothetical protein AF 74.7 11 0.00037 30.3 7.3 62 112-182 4-70 (223)
38 3luy_A Probable chorismate mut 60.8 75 0.0026 26.7 11.2 56 122-182 217-273 (329)
39 3mwb_A Prephenate dehydratase; 60.1 31 0.0011 28.9 7.6 56 122-182 211-267 (313)
40 2oqq_A Transcription factor HY 59.0 11 0.00038 22.2 3.3 22 54-75 3-24 (42)
41 1kd8_B GABH BLL, GCN4 acid bas 56.5 13 0.00043 21.2 3.1 19 56-74 3-21 (36)
42 1zme_C Proline utilization tra 55.7 12 0.00041 23.5 3.4 23 53-75 43-65 (70)
43 2qmw_A PDT, prephenate dehydra 55.7 46 0.0016 27.2 7.8 56 121-182 197-253 (267)
44 2wq1_A General control protein 55.4 14 0.00048 20.6 3.1 19 56-74 2-20 (33)
45 2lqj_A Mg2+ transport protein; 55.3 31 0.001 23.6 5.7 39 112-150 8-47 (94)
46 2qmx_A Prephenate dehydratase; 54.0 33 0.0011 28.3 6.7 56 122-182 209-265 (283)
47 3c3g_A Alpha/beta peptide with 49.7 19 0.00067 20.0 3.1 19 56-74 2-20 (33)
48 2er8_A Regulatory protein Leu3 48.9 10 0.00035 24.1 2.2 22 53-74 48-69 (72)
49 2oxj_A Hybrid alpha/beta pepti 47.4 22 0.00075 19.9 3.1 19 56-74 3-21 (34)
50 1gd2_E Transcription factor PA 47.0 20 0.00068 23.5 3.4 21 53-73 28-48 (70)
51 2jee_A YIIU; FTSZ, septum, coi 45.5 31 0.0011 23.2 4.3 25 49-73 15-39 (81)
52 1dh3_A Transcription factor CR 45.3 23 0.0008 21.8 3.4 21 54-74 22-42 (55)
53 1kd8_A GABH AIV, GCN4 acid bas 45.3 16 0.00055 20.8 2.3 19 56-74 3-21 (36)
54 2dtj_A Aspartokinase; protein- 45.0 83 0.0028 23.4 7.3 52 109-160 12-66 (178)
55 3c3f_A Alpha/beta peptide with 44.0 27 0.00092 19.6 3.1 19 56-74 3-21 (34)
56 2hy6_A General control protein 41.4 20 0.00069 20.1 2.3 19 56-74 3-21 (34)
57 1p3q_Q VPS9P, vacuolar protein 39.7 25 0.00085 21.9 2.9 25 14-38 3-27 (54)
58 1xkm_B Distinctin chain B; por 39.2 37 0.0012 17.4 2.9 17 49-65 6-22 (26)
59 2rrl_A FLIK, flagellar HOOK-le 37.7 89 0.0031 23.8 6.3 47 103-149 102-153 (169)
60 3m48_A General control protein 37.6 23 0.00078 19.8 2.1 19 56-74 2-20 (33)
61 1jnm_A Proto-oncogene C-JUN; B 35.8 39 0.0013 21.1 3.4 23 52-74 20-42 (62)
62 2r2v_A GCN4 leucine zipper; co 35.5 43 0.0015 18.7 3.1 19 56-74 3-21 (34)
63 1pyi_A Protein (pyrimidine pat 35.4 33 0.0011 22.8 3.3 23 53-75 47-69 (96)
64 2dt9_A Aspartokinase; protein- 35.3 1.3E+02 0.0044 22.0 7.6 53 108-160 12-67 (167)
65 2bni_A General control protein 34.7 30 0.001 19.4 2.3 19 56-74 3-21 (34)
66 1uo4_A General control protein 34.2 31 0.001 19.4 2.3 19 56-74 3-21 (34)
67 3dhx_A Methionine import ATP-b 34.1 1.1E+02 0.0038 20.8 8.0 51 125-180 36-86 (106)
68 2dgc_A Protein (GCN4); basic d 32.2 49 0.0017 20.9 3.4 23 52-74 28-50 (63)
69 1hwt_C Protein (heme activator 32.1 16 0.00055 23.6 1.1 21 53-73 57-77 (81)
70 3coq_A Regulatory protein GAL4 31.1 47 0.0016 21.5 3.4 22 53-74 44-65 (89)
71 2re1_A Aspartokinase, alpha an 30.6 1.3E+02 0.0043 22.0 6.2 52 109-160 22-74 (167)
72 2wt7_A Proto-oncogene protein 30.6 53 0.0018 20.6 3.4 23 52-74 21-43 (63)
73 1t2k_D Cyclic-AMP-dependent tr 29.5 58 0.002 20.2 3.4 22 53-74 21-42 (61)
74 2dnr_A Synaptojanin-1; RRM dom 27.9 1.2E+02 0.0043 20.6 5.2 24 125-149 27-50 (91)
75 2cqn_A Formin-binding protein 25.7 85 0.0029 20.6 3.9 26 20-45 9-34 (77)
76 3lh2_S 4E10_1VI7A_S0_002_N (T8 24.9 1.4E+02 0.0046 18.9 7.5 59 115-187 10-68 (76)
77 3v86_A De novo design helix; c 24.7 69 0.0024 16.5 2.5 15 55-69 1-15 (27)
78 2qsw_A Methionine import ATP-b 24.1 1.6E+02 0.0056 19.6 8.7 51 125-180 38-88 (100)
79 2qrr_A Methionine import ATP-b 23.4 1.7E+02 0.0058 19.5 7.3 51 125-180 38-88 (101)
80 1g1e_B SIN3A; four-helix bundl 23.3 56 0.0019 22.1 2.6 18 47-64 8-25 (89)
81 1gmj_A ATPase inhibitor; coile 22.6 1.8E+02 0.0062 19.6 5.9 44 20-74 35-78 (84)
82 1e91_A Paired amphipathic heli 21.9 60 0.002 21.7 2.5 19 47-65 5-23 (85)
83 2akf_A Coronin-1A; coiled coil 21.3 1.1E+02 0.0038 16.5 3.4 17 57-73 9-25 (32)
No 1
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=1.7e-16 Score=110.80 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=61.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
.|..||..||+||..||..|..|+++||..+...|+|.+.||..|++||+.|+++.+.|..+++.+.
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999887778888888899999999999999999998887764
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=5.8e-17 Score=113.68 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=59.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
.+|..|+.+||+||..||+.|..|++|||.. .+.+|++| |.+||+||+.||.+++.|+.+.+.+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~I---L~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAV---LRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999986 56666666 999999999999999999998887753
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=7.2e-16 Score=109.45 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=58.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+|..||..||+||..||+.|..|+++||......|+|.+.||..||+||+.|+++.+.+..+++.+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999876556677777799999999999999998877665543
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.63 E-value=7.5e-16 Score=108.10 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=57.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
+|..||..||+||..||+.|..|+++||... ..|+|.++||..||+||+.|+++++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999753 24566666699999999999999999998887765
No 5
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=5.8e-16 Score=108.04 Aligned_cols=67 Identities=27% Similarity=0.449 Sum_probs=59.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
.+|..|+..||+||..||..|..|+++||... ..|+|.++||..||+||+.|++++++|+.+.+.+.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999764 24577777799999999999999999999988764
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=8e-16 Score=104.78 Aligned_cols=64 Identities=22% Similarity=0.513 Sum_probs=54.4
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 029713 1 MENNPSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMK 67 (189)
Q Consensus 1 ~~~~~~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~ 67 (189)
|..+..++|.+|+.+||+||.+||..|..|++|||.. .+++|++| |..||+||+.||+.+.=|+
T Consensus 1 ~d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sI---L~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 1 MDDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred CChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHH---HHHHHHHHHHHHHhhhHHH
Confidence 5566788999999999999999999999999999964 46677777 9999999999999886553
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=4.8e-16 Score=103.81 Aligned_cols=56 Identities=30% Similarity=0.469 Sum_probs=48.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC----CCCChhhhHHHHHHHHHHHHHHH
Q 029713 8 SRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM----EATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 8 ~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~----~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
+|.+|+.+||.||.+||..|..|++|||...+. .|.|.+++|..||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999966432 35566666999999999999865
No 8
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.55 E-value=6.8e-15 Score=97.23 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=54.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~ 64 (189)
|+|..||..||+|+..||+.|..||.+||..+...|.|..++|..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998888899999999999999999998764
No 9
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=1.5e-15 Score=101.82 Aligned_cols=55 Identities=24% Similarity=0.483 Sum_probs=48.3
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCCChhhhHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQR------PMEATSLPDQLDEATKYIKRLQTNL 63 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~------~~~k~s~~~~l~~ai~yI~~Lq~~v 63 (189)
..+|..|+.+||+||..||+.|..|++|||... +.+|++| |..||+||+.||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~I---L~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGI---LSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTT---TTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHH---HHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999875 3466666 999999999999764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.55 E-value=1.2e-15 Score=105.51 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEAT-SLPDQLDEATKYIKRLQTNLERMK 67 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~-s~~~~l~~ai~yI~~Lq~~v~~L~ 67 (189)
.-+|..||..||+||..||+.|..||.+||...+.+|. |.++||..||+||+.||+.+++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999965455666 678889999999999999998875
No 11
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.51 E-value=2.8e-14 Score=106.39 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 029713 6 SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPM-EATSLPDQLDEATKYIKRLQTNLERMKER 69 (189)
Q Consensus 6 ~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~-~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~ 69 (189)
..+|..|+.+||+||..||+.|..|++|||...+. .|++.+.+|..||+||+.||+.++.|+..
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999987543 35666666999999999999999999865
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.45 E-value=7.3e-14 Score=94.45 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=51.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 029713 7 SSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLE 64 (189)
Q Consensus 7 s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~ 64 (189)
.+|..||..||+|+..||+.|..||.+||..+ ..|.|..++|..||+||..|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999754 6789999999999999999998653
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.44 E-value=1.5e-14 Score=99.17 Aligned_cols=54 Identities=28% Similarity=0.480 Sum_probs=48.2
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCCChhhhHHHHHHHHHHHHH
Q 029713 5 PSSSRTDRKTIERNRRNQMKALYSTLNSIVPHQ----RPMEATSLPDQLDEATKYIKRLQT 61 (189)
Q Consensus 5 ~~s~~~~h~~~ER~RR~~mn~~~~~LrsllP~~----~~~~k~s~~~~l~~ai~yI~~Lq~ 61 (189)
...+|..|+.+||+||.+||..|..|++|||.. .+.||++| |..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasI---L~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHH---HHHHHHHHHHHhc
Confidence 456789999999999999999999999999965 56778887 9999999999874
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=7.3e-12 Score=83.96 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHH
Q 029713 10 TDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQT 61 (189)
Q Consensus 10 ~~h~~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~ 61 (189)
..-++.||+|+..||+.|..||.+||..+...|.|..++|.-||+||..||+
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3456889999999999999999999999888899999999999999999985
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=2.3e-10 Score=98.93 Aligned_cols=56 Identities=23% Similarity=0.554 Sum_probs=41.5
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCChhhhHHHHHHHHHHHHHH
Q 029713 4 NPSSSRTDRKTIERNRRNQMKALYSTLNSIVP-HQRPMEATSLPDQLDEATKYIKRLQTN 62 (189)
Q Consensus 4 ~~~s~~~~h~~~ER~RR~~mn~~~~~LrsllP-~~~~~~k~s~~~~l~~ai~yI~~Lq~~ 62 (189)
+..++|..|+.+||+||.+||..|..|++||| ...++||++| |..||.||+.|+.-
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~i---l~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTV---LQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHH---HHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHH---HHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999 4468889988 99999999999864
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.80 E-value=1e-08 Score=73.29 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Q 029713 14 TIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLER 65 (189)
Q Consensus 14 ~~ER~RR~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~ 65 (189)
..||+|-..||+.|..||.+||..+...|.|..++|.-||+||..|++-+++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999988888999999999999999999988753
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.79 E-value=2.2e-09 Score=93.80 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=49.3
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCCChhhhHHHHHHHHHHHHHH
Q 029713 4 NPSSSRTDRKTIERNRRNQMKALYSTLNSIVP----HQRPMEATSLPDQLDEATKYIKRLQTN 62 (189)
Q Consensus 4 ~~~s~~~~h~~~ER~RR~~mn~~~~~LrsllP----~~~~~~k~s~~~~l~~ai~yI~~Lq~~ 62 (189)
+...+|.+|+.+||+||.+||..|..|++||| ...+.||++| |..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~i---l~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTV---LRMAVQHMKTLRGA 68 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHH---HHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHH---HHHHHHHHHHhhcc
Confidence 34567999999999999999999999999999 5578899999 99999999999843
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.35 E-value=1.6e-06 Score=60.12 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 029713 20 RNQMKALYSTLNSIVPHQ-RPMEATSLPDQLDEATKYIKRLQTNLERMKERK 70 (189)
Q Consensus 20 R~~mn~~~~~LrsllP~~-~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~ 70 (189)
|..||+.+..|..|||.. .+..|++.+.||..|++||+.||+..+.+.+.-
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999975 456688888889999999999999888776543
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.89 E-value=0.024 Score=38.44 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.|.+.|..+ +|.+.+|..+|-++|..|.+.+....++.+...+.+.+.+ . ...+.|.+.|.++.
T Consensus 5 ~~~l~v~~~Dr-pGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~-~----~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGKDK-SGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE-K----QDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEESCC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-C----CCHHHHHHHHHHHH
T ss_pred eEEEEEEECCC-CCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC-C----CCHHHHHHHHHHHH
Confidence 35678888765 5699999999999999999999988888777777776654 2 57789999998764
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.29 E-value=0.097 Score=40.55 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.|.|.|+.+ +|++..|..+|.++|++|++++..+..+.++..+.+... . ...+.|.+.|.++.
T Consensus 6 ~~~itv~~~Dr-pGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--~----~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDR-PGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--P----SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--H----HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCC-CcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--C----CCHHHHHHHHHHHH
Confidence 46788888755 569999999999999999999999888888777777632 1 35567787777654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.12 E-value=0.11 Score=40.72 Aligned_cols=50 Identities=4% Similarity=-0.045 Sum_probs=41.6
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEec
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQI 162 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~ 162 (189)
.+.|.|.|..+ +|++..|..+|.++|+.|+.+...+..+.++..+.+...
T Consensus 5 ~~~ltv~~~Dr-pGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDR-VGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCC-CcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 36788888765 469999999999999999999999888877777777643
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.90 E-value=0.13 Score=34.13 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=43.4
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHH
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKK 181 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~ 181 (189)
+.|.+.+..+ +|.|.+|..+|.+.|+.|.+.+....++.....|.+.+.+. .....+.+.|++
T Consensus 6 ~~l~v~~~Dr-~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~-----~~l~~l~~~L~~ 68 (88)
T 2ko1_A 6 AGIRIVGEDK-NGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT-----DKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEEECC-TTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH-----HHHHHHHHHHTT
T ss_pred EEEEEEEECC-CcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH-----HHHHHHHHHHhc
Confidence 4566666544 56899999999999999999999876664445555555332 344555555543
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.98 E-value=0.48 Score=36.54 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=48.3
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE------DTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~------~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
.+.|.+.|.. ++|++..|..+|.++|++|..+...+.+ +.-.+.+...+..+. +.+.+.|.+.|.++..
T Consensus 93 ~~~l~v~~~D-~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~---~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDD-KLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS---GCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESC-CTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT---TSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCC-CccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC---CCCHHHHHHHHHHHHH
Confidence 4567778865 4568999999999999999999988764 222333333333222 4788899999887643
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.58 E-value=0.41 Score=37.32 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=48.3
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE------DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~------~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.|.|.|.. ++|++..|..+|-++|+.|.++...+.+ +.++-.+.+.+. . +.+ +.|.+.|..+.
T Consensus 93 ~~iltv~g~D-rpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~---~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 93 EYELYVEGPD-SEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--F---PLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEC-CTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--G---GGH-HHHHHHHHHHH
T ss_pred EEEEEEEeCC-CcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--C---Ccc-HHHHHHHHHHH
Confidence 4678888976 4579999999999999999999998876 444444444433 2 356 78888887654
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.26 E-value=1 Score=38.53 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.|.++|..++ |+...|...|-++|..|+.++-...++.++-.+.+.+.... .+.+.|.+.|..+
T Consensus 12 ~~~lt~~g~Dr~-Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~----~~~~~l~~~l~~~ 77 (415)
T 3p96_A 12 SVLITVTGVDQP-GVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV----ADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH----HTSHHHHHHHHHH
T ss_pred eEEEEEEcCCCC-CHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc----CCHHHHHHHHHHH
Confidence 467888897655 69999999999999999999999999987777777654321 3557788887655
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.56 E-value=3.1 Score=34.92 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=49.1
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV--EDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~--~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+.|..++ |+...|...|-++|..|++++-... ++.++-.+.+.+.+. ..+.+.|.+.+..+
T Consensus 22 ~~iLtv~c~Drp-GIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~----~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 22 TFRLVIACPDRV-GIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL----PFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS----SSCHHHHHHHHHHH
T ss_pred eEEEEEECCCCC-CHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC----CCCHHHHHHHHHHH
Confidence 467888897655 6999999999999999999998865 555554444443322 26788898888654
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=89.52 E-value=2.8 Score=34.82 Aligned_cols=66 Identities=9% Similarity=-0.046 Sum_probs=48.8
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.+.+.|..++ |+...|...|-++|+.+++++-.+ .++.++-.+.+. .+. ..+.+.|.+.+..+-
T Consensus 8 ~~vLtv~c~Drp-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~--~~~---~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 8 TWILTADCPSML-GTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR--QPD---DFDEAGFRAGLAERS 75 (286)
T ss_dssp CEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE--CCS---SCCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCC-CHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe--cCC---CCCHHHHHHHHHHHH
Confidence 467888897655 699999999999999999999874 345554444443 332 377889998887653
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=88.30 E-value=4.6 Score=33.56 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+.|..+. |+...|...|-++|+.|++++-.+ .++.++-.+.+.+.+. ..+.+.|.+.+..+
T Consensus 6 ~~iLtv~g~Drp-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~----~~~~~~L~~~f~~l 73 (288)
T 3obi_A 6 QYVLTLSCPDRA-GIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK----VIPLASLRTGFGVI 73 (288)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC----CCCHHHHHHHHHHH
T ss_pred eEEEEEECCCCC-CHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC----CCCHHHHHHHHHHH
Confidence 467888897655 699999999999999999999863 3556555555555433 26788899888765
No 29
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=86.49 E-value=2.1 Score=32.76 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.+.... ++|.|.+|..+|.+.|+++.+.++.... +....+|.+. ... -..+.+...|.+++
T Consensus 5 ~IsV~v~N-rpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d~----~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 5 ILSVLLEN-ESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GDE----KVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEC-CTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SCH----HHHHHHHHHHHHST
T ss_pred EEEEEEeC-CCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--ccH----HHHHHHHHHHcCCC
Confidence 45665554 4579999999999999999999997654 5566677776 221 45577777777764
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.12 E-value=5.2 Score=33.29 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.+.+.|..+. |+...|...|-++|+.|++++-.. .++.++-.+.+...-+.. ..+.+.|.+.+..+
T Consensus 10 ~~vLtv~c~Dr~-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~--~~~~~~L~~~f~~l 79 (292)
T 3lou_A 10 QFVLTLSCPSAA-GQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDAD--ALRVDALRREFEPI 79 (292)
T ss_dssp EEEEEEEEESCS-CHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHHH
T ss_pred cEEEEEEcCCCC-CHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCccc--CCCHHHHHHHHHHH
Confidence 467888897665 699999999999999999999884 455555444444431011 36778888888654
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=84.98 E-value=5.1 Score=33.26 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=44.5
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNV--VEDTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~--~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.+.+.+.|..+. |+...|...|-++|..|++++-.. .++.++- .+.+.... .+.+.|.+.+..+-
T Consensus 7 ~~vLtv~c~Dr~-GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~----~~~~~L~~~f~~la 73 (287)
T 3nrb_A 7 QYVLSLACQDAP-GIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM--RVSVEIPV----AGVNDFNSAFGKVV 73 (287)
T ss_dssp EEEEEEEEECCT-THHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE--EEEEECCC-------CHHHHHHHHHH
T ss_pred eEEEEEECCCCC-CHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE--EEEEEcCC----CCHHHHHHHHHHHH
Confidence 467888897655 699999999999999999999864 3444444 44443332 33457887776553
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=83.07 E-value=2.4 Score=32.55 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=46.0
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHh
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFG 183 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i 183 (189)
.|.+.... ++|.|.+|..+|...|++|.+.++.... +....+|.+... . -..+.|...|.+++
T Consensus 6 ~IsV~veN-rpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~----~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 6 IISLLMEN-EAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--D----EIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEC-STTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--H----HHHHHHHHHHHHST
T ss_pred EEEEEEeC-CCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--H----HHHHHHHHHhcCCC
Confidence 45565544 4579999999999999999999997544 566677777622 1 44577777777764
No 33
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=82.38 E-value=2.2 Score=24.96 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 48 QLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 48 ~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
++.+--+||++|+++-.+|+.-++.+.
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 478889999999999999988776653
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=80.05 E-value=6.3 Score=31.00 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=46.3
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhc
Q 029713 113 LEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE--DTIFHTIHSKQIGDSGSDHDASARISERLKKFGQ 184 (189)
Q Consensus 113 v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~--~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~ 184 (189)
..|.|.... ++|.|.+|..+|...|+.|.+.++.... +....+|.+...+ -..+.|...|.+++.
T Consensus 30 ~~LsVlVeN-~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e------~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHN-KPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD------KTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEEC-CTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT------THHHHHHHHHTTSTT
T ss_pred EEEEEEECC-CChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH------HHHHHHHHHhcCcCc
Confidence 345555544 4568999999999999999999997543 5566777876332 345777777777543
No 35
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=76.42 E-value=12 Score=27.31 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=29.7
Q ss_pred EEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee
Q 029713 114 EVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 114 ~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
.|.|.|..+ .|++.+|+.+|-+.++++..+++.+.
T Consensus 2 ~~~v~~~dr-~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDR-LGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSC-TTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecC-CcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 366778654 56999999999999999999999766
No 36
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.68 E-value=6.1 Score=22.78 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 48 QLDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 48 ~l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+|+++-+-|-.|+.+++.|+.+|.++
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998765
No 37
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=74.71 E-value=11 Score=30.32 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 112 ALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVE-----DTIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 112 ~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~-----~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.+.|.|.+..+ +|+|.+|+.+|-+++..|.+.+..... +...-+ .++.+ . ..+++.++|+++
T Consensus 4 ~VtL~I~a~DR-pGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d-----~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENK-IGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG-----G-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECC-TTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS-----S-CHHHHHHHHHTC
T ss_pred eEEEEEEEcCC-CCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC-----C-CHHHHHHHHhCC
Confidence 35666666544 569999999999999999999998754 333333 55543 3 678888888754
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=60.83 E-value=75 Score=26.73 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDTI-FHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~-~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.++|.|.++|..|...|++.....+-...+.. -|.|.+.+.+. .+-..+.+.|.++
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~-----~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA-----PWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC-----TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC-----cCCHHHHHHHHHH
Confidence 34578999999999999999999998876654 48899887653 4445677777665
No 39
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=60.08 E-value=31 Score=28.94 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=41.4
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVEDT-IFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~-~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.++|.|.++|..|...|++.....+-...+. .-|.|.+.+.+. .+-..+.+.|.++
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~-----~~d~~v~~aL~~L 267 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH-----ATDSRVADALAGL 267 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC-----TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC-----CCcHHHHHHHHHH
Confidence 4567899999999999999999999876543 347888877543 3345566666554
No 40
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.02 E-value=11 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 029713 54 KYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 54 ~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
.|+.+|+.++++|+.+..+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877766653
No 41
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=56.47 E-value=13 Score=21.21 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..++
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677888888877766654
No 42
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.68 E-value=12 Score=23.48 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 029713 53 TKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988877653
No 43
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=55.67 E-value=46 Score=27.18 Aligned_cols=56 Identities=4% Similarity=-0.040 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 121 LDFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 121 ~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
..++|.|.++|..|...|++.....+-...+ ..-|.|.+.+. . .+-..+.+.|.++
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-----~~d~~v~~aL~~L 253 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-----AITTDIKKVIAIL 253 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-----CSCHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-----CCcHHHHHHHHHH
Confidence 3445789999999999999999999987655 34588888877 3 2225555555544
No 44
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=55.40 E-value=14 Score=20.63 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4677788887777766654
No 45
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=55.34 E-value=31 Score=23.62 Aligned_cols=39 Identities=3% Similarity=0.010 Sum_probs=30.8
Q ss_pred eEEEEEEeCCC-CcchHHHHHHHHHhCCCeEEEEEEEeeC
Q 029713 112 ALEVVLTTGLD-FQFMFIETIRLLHEEGVEIVNASFNVVE 150 (189)
Q Consensus 112 ~v~I~i~c~~~-~~~~l~~il~~Le~l~L~V~~a~vs~~~ 150 (189)
.+.|.++|... .+.....+++.|+..++.+.+..+..++
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~ 47 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG 47 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC
Confidence 47899999875 2256788999999999999999965533
No 46
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=54.00 E-value=33 Score=28.29 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEecCCCCCCCccHHHHHHHHHHH
Q 029713 122 DFQFMFIETIRLLHEEGVEIVNASFNVVED-TIFHTIHSKQIGDSGSDHDASARISERLKKF 182 (189)
Q Consensus 122 ~~~~~l~~il~~Le~l~L~V~~a~vs~~~~-~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~ 182 (189)
.++|.|.++|..|...|++.....+-...+ ..-|.|.+.+.+. .+-..+.+.|.++
T Consensus 209 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~-----~~d~~v~~aL~~L 265 (283)
T 2qmx_A 209 NEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH-----REDQNVHNALENL 265 (283)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC-----TTSHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC-----CCcHHHHHHHHHH
Confidence 445789999999999999999999987655 4558888887654 3335666666654
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.73 E-value=19 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 5678888888877776664
No 48
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.91 E-value=10 Score=24.06 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029713 53 TKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
-.||..|+++|+.|+...+.+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999998776543
No 49
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=47.41 E-value=22 Score=19.95 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+.+|+.+|++|-.+++++.
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 5678888888887777665
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.96 E-value=20 Score=23.46 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029713 53 TKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~ 73 (189)
-.||++|+.+|.+|+...+.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998765543
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.53 E-value=31 Score=23.24 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~L~~~~~~~ 73 (189)
+..||+-|.-||.++++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999876654
No 52
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=45.28 E-value=23 Score=21.83 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029713 54 KYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 54 ~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
.|+.+|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988766654
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=45.25 E-value=16 Score=20.79 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|..++..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4567777777766665554
No 54
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=45.03 E-value=83 Score=23.45 Aligned_cols=52 Identities=19% Similarity=0.010 Sum_probs=31.6
Q ss_pred ECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 029713 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSK 160 (189)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~---~~~~~~ti~~k 160 (189)
..+-..|.|..-.++++.+.+|++.|.+.|+.|--...++. ++..-++|.+.
T Consensus 12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 34556676643234456799999999999965555444433 33444455554
No 55
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.95 E-value=27 Score=19.56 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+.+|+.+|++|-.++..+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 5677888888777766654
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.41 E-value=20 Score=20.10 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677888888877766654
No 57
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=39.71 E-value=25 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 029713 14 TIERNRRNQMKALYSTLNSIVPHQR 38 (189)
Q Consensus 14 ~~ER~RR~~mn~~~~~LrsllP~~~ 38 (189)
.++|-+|...++-+.+|.++-|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 5788999999999999999999876
No 58
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=39.25 E-value=37 Score=17.42 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029713 49 LDEATKYIKRLQTNLER 65 (189)
Q Consensus 49 l~~ai~yI~~Lq~~v~~ 65 (189)
|-+|-+|+.+|+.+++.
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77889999999988764
No 59
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=37.73 E-value=89 Score=23.81 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=36.7
Q ss_pred cEEEEEECCeEEEEEEeCCC--Cc---chHHHHHHHHHhCCCeEEEEEEEee
Q 029713 103 QIEIHEMGSALEVVLTTGLD--FQ---FMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 103 ~V~V~~~g~~v~I~i~c~~~--~~---~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
+|.|++.++.+.|.|..... +. .-+.++=+.|.+.||.+..++|+..
T Consensus 102 ~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 102 HISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 46667788999999987654 11 2477888899999999999999854
No 60
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.60 E-value=23 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+.+|+++|++|-.++.++.
T Consensus 2 M~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHH
Confidence 3467777777776666554
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.77 E-value=39 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029713 52 ATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 52 ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
--.|+.+|+.++..|+.+...+.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888776664
No 62
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=35.54 E-value=43 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4677777777776665543
No 63
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.42 E-value=33 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 029713 53 TKYIKRLQTNLERMKERKERLMG 75 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~~ 75 (189)
-.|+..|++++..|+....++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998877653
No 64
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=35.35 E-value=1.3e+02 Score=21.96 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=34.4
Q ss_pred EECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 029713 108 EMGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV---EDTIFHTIHSK 160 (189)
Q Consensus 108 ~~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~---~~~~~~ti~~k 160 (189)
...+-..|.+..-.+++|.+.+++.+|.+.|+.|.-...+.. +|..-.+|.+.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 344556666654334456789999999999888877655432 33455566665
No 65
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.68 E-value=30 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+.+|++|-.++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 5678888888877776654
No 66
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.22 E-value=31 Score=19.37 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 029713 56 IKRLQTNLERMKERKERLM 74 (189)
Q Consensus 56 I~~Lq~~v~~L~~~~~~~~ 74 (189)
+++|+++|++|-.++..++
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677788888777666554
No 67
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=34.14 E-value=1.1e+02 Score=20.85 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHH
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLK 180 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~ 180 (189)
..++++.+.+ ...+.|+.+++...++..+=.+.+.+.+.. .+.+...+.|+
T Consensus 36 PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~----~~~~~ai~~L~ 86 (106)
T 3dhx_A 36 PLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGTQ----QDTQAAIAWLQ 86 (106)
T ss_dssp CHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESCH----HHHHHHHHHHH
T ss_pred hHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCCH----HHHHHHHHHHH
Confidence 3566666665 356889999999999999989999887654 33444444444
No 68
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.19 E-value=49 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029713 52 ATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 52 ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
--.|+.+|+.++..|+.+...|.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888887766654
No 69
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=32.05 E-value=16 Score=23.57 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029713 53 TKYIKRLQTNLERMKERKERL 73 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~ 73 (189)
-.||..|+++|..|+.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998765544
No 70
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.15 E-value=47 Score=21.55 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029713 53 TKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
-.|+..|+++++.|+.....+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3699999999999998887775
No 71
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=30.62 E-value=1.3e+02 Score=22.04 Aligned_cols=52 Identities=12% Similarity=-0.017 Sum_probs=32.0
Q ss_pred ECCeEEEEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEE
Q 029713 109 MGSALEVVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVV-EDTIFHTIHSK 160 (189)
Q Consensus 109 ~g~~v~I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~-~~~~~~ti~~k 160 (189)
..+-..|.|..-.+++|.+.+|+++|.++|+.|.....+.. +|....+|.+.
T Consensus 22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 34556666653123446799999999999988877665422 34444455554
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.60 E-value=53 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029713 52 ATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 52 ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
--.|+..|+.++..|+.+...+.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888777665553
No 73
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.47 E-value=58 Score=20.16 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029713 53 TKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 53 i~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
-.|+..|+.++..|+.+...+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777665554
No 74
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.93 E-value=1.2e+02 Score=20.55 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEee
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVV 149 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~ 149 (189)
.++..+++.|..+| +|+.+.+...
T Consensus 27 ~l~~~L~~~F~~~G-~Vi~vr~~~d 50 (91)
T 2dnr_A 27 ALIDELLQQFASFG-EVILIRFVED 50 (91)
T ss_dssp HHHHHHHHHHHTTC-CEEEEEECSS
T ss_pred HHHHHHHHHHHhCC-CeEEEEEecC
Confidence 46899999999999 8999887653
No 75
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.70 E-value=85 Score=20.56 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCh
Q 029713 20 RNQMKALYSTLNSIVPHQRPMEATSL 45 (189)
Q Consensus 20 R~~mn~~~~~LrsllP~~~~~~k~s~ 45 (189)
|+...+....|+.+-|.+...+.+..
T Consensus 9 rrl~~~F~~mLk~~~p~I~~~s~We~ 34 (77)
T 2cqn_A 9 KRKESAFKSMLKQAAPPIELDAVWED 34 (77)
T ss_dssp HHHHHHHHHHHHTCSSCCCTTCCHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 33456777888888776766544443
No 76
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=24.86 E-value=1.4e+02 Score=18.87 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=39.6
Q ss_pred EEEEeCCCCcchHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHHHHhccCC
Q 029713 115 VVLTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLKKFGQDGS 187 (189)
Q Consensus 115 I~i~c~~~~~~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~~~i~~~~ 187 (189)
-.+.|+. . .+-+|...|++.++.|++..++.. +.+++.+. ... .+.+.+.|..+.+|..
T Consensus 10 ~~l~~dY--~-~~g~v~~~L~~~~~~I~~~~Y~~~---V~l~v~vp--~~~------~~~~~~~L~d~t~G~~ 68 (76)
T 3lh2_S 10 YTLQANW--F-DITGILWLLGQVDGKIINSDVQAF---VLLRVALP--AAK------VAEFSAKLADFSGGSL 68 (76)
T ss_dssp EEEEECH--H-HHHHHHHHHHHTTCEEEEEEEEEE---EEEEEEEC--C-C------C-CHHHHHHHHHTTCC
T ss_pred EEEEEcc--c-CHHHHHHHHHHCCCEEEcccccCe---EEEEEEEC--HHH------HHHHHHHHHHHhCCEE
Confidence 3445643 2 578899999999999999888543 44444443 332 3668888888888765
No 77
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.70 E-value=69 Score=16.50 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 029713 55 YIKRLQTNLERMKER 69 (189)
Q Consensus 55 yI~~Lq~~v~~L~~~ 69 (189)
|+-+|+.++-+|+-+
T Consensus 1 yvyqlkdevgelkge 15 (27)
T 3v86_A 1 YVYQLKDEVGELKGE 15 (27)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhH
Confidence 344555555555443
No 78
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=24.09 E-value=1.6e+02 Score=19.56 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=37.4
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHH
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLK 180 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~ 180 (189)
.+++.+...+ ...+.++.+++...++..+=.+.+.+.+.. .+.+...+.|+
T Consensus 38 pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~----~~~~~ai~~L~ 88 (100)
T 2qsw_A 38 PIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLLGEE----QNILAAIEGLR 88 (100)
T ss_dssp CHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEESCH----HHHHHHHHHHH
T ss_pred hHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEECCH----HHHHHHHHHHH
Confidence 4677777766 478899999999999999988888886543 33444444444
No 79
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=23.40 E-value=1.7e+02 Score=19.51 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=36.0
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEecCCCCCCCccHHHHHHHHH
Q 029713 125 FMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKQIGDSGSDHDASARISERLK 180 (189)
Q Consensus 125 ~~l~~il~~Le~l~L~V~~a~vs~~~~~~~~ti~~k~~~~~~~~~~~~~~l~~~L~ 180 (189)
..++.+...+ ...+.++.+++...++..+=.+.+.+.+.. .+.+...+.|+
T Consensus 38 pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~----~~~~~ai~~L~ 88 (101)
T 2qrr_A 38 PLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAELFGNE----QDDSAAIEYLR 88 (101)
T ss_dssp CHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESCH----HHHHHHHHHHH
T ss_pred hHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEEeCCH----HHHHHHHHHHH
Confidence 3577766655 467888999999999999988888886543 33344444444
No 80
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.27 E-value=56 Score=22.08 Aligned_cols=18 Identities=11% Similarity=0.541 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029713 47 DQLDEATKYIKRLQTNLE 64 (189)
Q Consensus 47 ~~l~~ai~yI~~Lq~~v~ 64 (189)
..+.+|++|++.++.+-+
T Consensus 8 ~~~~~A~~YvnkVK~rF~ 25 (89)
T 1g1e_B 8 VEFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 348999999999998854
No 81
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.65 E-value=1.8e+02 Score=19.56 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029713 20 RNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYIKRLQTNLERMKERKERLM 74 (189)
Q Consensus 20 R~~mn~~~~~LrsllP~~~~~~k~s~~~~l~~ai~yI~~Lq~~v~~L~~~~~~~~ 74 (189)
|++..+.+..||.-+ .+-|..=++-|+.|++.++.++.....+.
T Consensus 35 rqkekEqL~~LKkkl-----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666778888888644 33477777788888888888777766654
No 82
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=21.89 E-value=60 Score=21.69 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029713 47 DQLDEATKYIKRLQTNLER 65 (189)
Q Consensus 47 ~~l~~ai~yI~~Lq~~v~~ 65 (189)
..+.+|++|++.++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 4589999999999988654
No 83
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.29 E-value=1.1e+02 Score=16.52 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029713 57 KRLQTNLERMKERKERL 73 (189)
Q Consensus 57 ~~Lq~~v~~L~~~~~~~ 73 (189)
+.|+.-+++|+++.+.+
T Consensus 9 r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
Done!