BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029714
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 347 bits (891), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 160/189 (84%), Positives = 175/189 (92%)
Query: 1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGR 60
+LAYQD+LYVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQKNMVTAQGR
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGR 190
Query: 61 ADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWH 120
DPNQNTGIVIQKSRIGATSDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PAGW
Sbjct: 191 TDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWF 250
Query: 121 EWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 180
WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +
Sbjct: 251 PWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKA 310
Query: 181 TGFPFSLGL 189
T FPFSLGL
Sbjct: 311 TTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 134/187 (71%)
Query: 3 AYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRAD 62
AYQDTLY HS RQF+ + + GTVDFIFGNAA V Q C + ARKP Q+NMVTAQGR D
Sbjct: 129 AYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTD 188
Query: 63 PNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEW 122
PNQ TG IQ I A+SDL+PV FPTYLGRPWKEYSRTV+M+S + +I+PAGW EW
Sbjct: 189 PNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEW 248
Query: 123 DGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTG 182
DG+FAL TL+YGE N G GAGTS RVKW G+ VIT +A FT I G SWL STG
Sbjct: 249 DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTG 308
Query: 183 FPFSLGL 189
+ GL
Sbjct: 309 VAYVDGL 315
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 37/190 (19%)
Query: 1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTA 57
++ YQDTLYV R FF +C I+GTVDFIFG+ A+ NCD+ +R SG +
Sbjct: 149 LVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLT 208
Query: 58 QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPWKEYS--------------R 102
+ NQ G+VI SR+ SD P + +Y LGRPW + +
Sbjct: 209 APSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQ 264
Query: 103 TVIMQSSITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGF 154
TV + +S+ + I+ GW + G NT+++ E+++ GAGA S K
Sbjct: 265 TVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDR 317
Query: 155 RVITSATEAQ 164
R +T A A+
Sbjct: 318 RQLTDAQAAE 327
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 37/190 (19%)
Query: 1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTA 57
++ YQDTLYV R FF +C I+GTVDFIFG+ A+ NCD+ +R SG +
Sbjct: 149 LVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLT 208
Query: 58 QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPWKEYS--------------R 102
+ NQ G+VI SR+ SD P + +Y LGRPW + +
Sbjct: 209 APSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQ 264
Query: 103 TVIMQSSITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGF 154
TV + +S+ + I+ GW + G NT+++ E+++ GAGA S K
Sbjct: 265 TVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDR 317
Query: 155 RVITSATEAQ 164
R +T A A+
Sbjct: 318 RQLTDAQAAE 327
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 37/190 (19%)
Query: 1 MLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTA 57
++ YQ TLYV R FF +C I+GTVDFIFG+ A+ NCD+ +R SG +
Sbjct: 149 LVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLT 208
Query: 58 QGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTY-LGRPWKEYS--------------R 102
+ NQ G+VI SR+ SD P + +Y LGRPW + +
Sbjct: 209 APSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQ 264
Query: 103 TVIMQSSITDVIHPAGWHEWDGNFAL-NTLFYG-------EHQNAGAGAGTSGRVKWKGF 154
TV + +S+ + I+ GW + G NT+++ E+++ GAGA S K
Sbjct: 265 TVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDR 317
Query: 155 RVITSATEAQ 164
R +T A A+
Sbjct: 318 RQLTDAQAAE 327
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 1 MLAYQDTLYVHS-NRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR 45
+ YQDTLY + +R +F +C I+G VDFIFG+ V NC+I AR
Sbjct: 175 LEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVAR 220
>pdb|2JPB|A Chain A, Solution Structure Of Ompr-C Dna Binding Protein
Length = 104
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 35 AVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLG 94
AVL+ H R+P S K M A+GR I +Q SR+ + P P Y+
Sbjct: 32 AVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH---PRYIQ 88
Query: 95 RPW 97
W
Sbjct: 89 TVW 91
>pdb|1OPC|A Chain A, Ompr Dna-Binding Domain, Escherichia Coli
Length = 110
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 35 AVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLG 94
AVL+ H R+P S K M A+GR I +Q SR+ + P + P Y+
Sbjct: 38 AVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDP---AHPRYIQ 94
Query: 95 RPW 97
W
Sbjct: 95 TVW 97
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 181 TGFPFS 186
T +PF
Sbjct: 372 TNYPFK 377
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 181 TGFPFS 186
T +PF
Sbjct: 372 TNYPFK 377
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 181 TGFPFS 186
T +PF
Sbjct: 371 TNYPFK 376
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 314 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 371
Query: 181 TGFPFS 186
T +PF
Sbjct: 372 TNYPFK 377
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 181 TGFPFS 186
T +PF
Sbjct: 371 TNYPFK 376
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 341 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 398
Query: 181 TGFPFS 186
T +PF
Sbjct: 399 TNYPFK 404
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 124 GNFALNTLFYGEHQNAGAGAGT-SGRVKWK--GFRVITSATEAQAFTPGSFIAGSSWLGS 180
G + NT F G H N A + R +W+ + + + T Q TP FI LG
Sbjct: 313 GEYGWNTFFLGNHDNPRAVSHFGDDRPQWREASAKALATVTLTQRGTP--FIFQGDELGM 370
Query: 181 TGFPFS 186
T +PF
Sbjct: 371 TNYPFK 376
>pdb|1ODD|A Chain A, Ompr C-terminal Domain (ompr-c) From Escherichia Coli
Length = 118
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 35 AVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLG 94
AVL+ H R+P S K M A+GR I +Q SR+ + P + P Y+
Sbjct: 46 AVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDP---AHPRYIQ 102
Query: 95 RPW 97
W
Sbjct: 103 TVW 105
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 13 NRQFFVNCLIAGTVDFIFGN 32
N+ + +C +GT+DF FGN
Sbjct: 249 NKVYVADCKTSGTIDFQFGN 268
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 5 QDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAV 36
Q+T + N + V+C ++G+VDF F A +
Sbjct: 239 QETYDANGNLFYLVDCNLSGSVDFAFDKNAKI 270
>pdb|3KYE|A Chain A, Crystal Structure Of RoadblockLC7 DOMAIN FROM
STREPTOMYCES Avermitilis
pdb|3KYE|B Chain B, Crystal Structure Of RoadblockLC7 DOMAIN FROM
STREPTOMYCES Avermitilis
pdb|3KYE|C Chain C, Crystal Structure Of RoadblockLC7 DOMAIN FROM
STREPTOMYCES Avermitilis
pdb|3KYE|D Chain D, Crystal Structure Of RoadblockLC7 DOMAIN FROM
STREPTOMYCES Avermitilis
Length = 150
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 5 QDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCD-----IHARKPNSGQKNMVTAQG 59
++ LY + ++ L +G V + +AVL +CD +H P+S A G
Sbjct: 14 RENLYFQGHHVSDLDWLXSGLVQRVPHTTSAVLLSCDGLVKSVHGLDPDSADHXAALASG 73
Query: 60 RADPNQNTGIVIQKSRIGATSDLKPV 85
++ GI R G D++ V
Sbjct: 74 LYSLGRSAGI-----RFGDGGDVRQV 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,980,642
Number of Sequences: 62578
Number of extensions: 245750
Number of successful extensions: 409
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 19
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)