Your job contains 1 sequence.
>029716
MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV
GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS
VRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV
YGSHQQQVS
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029716
(189 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 526 1.3e-50 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 518 9.5e-50 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 517 1.2e-49 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 482 6.2e-46 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 480 1.0e-45 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 369 5.8e-34 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 368 7.4e-34 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 352 3.7e-32 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 348 9.8e-32 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 316 2.4e-28 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 231 1.4e-25 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 284 5.9e-25 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 277 9.5e-24 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 228 5.2e-22 2
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 261 1.4e-21 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 206 2.8e-18 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 207 4.6e-18 2
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 176 9.2e-13 1
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 175 1.5e-12 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 174 2.0e-12 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 163 3.9e-12 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 155 5.5e-12 2
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 163 1.7e-11 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 163 1.8e-11 1
UNIPROTKB|F5GWK3 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 1.8e-11 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 163 1.8e-11 1
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 164 1.8e-11 1
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 164 1.8e-11 1
RGD|1305770 - symbol:Rbm22 "RNA binding motif protein 22"... 164 1.8e-11 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 163 2.0e-11 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 163 2.0e-11 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 163 2.0e-11 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 163 2.0e-11 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 163 2.0e-11 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 163 2.0e-11 1
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|F2Z4G3 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q9NW64 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q4R4J1 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q5RAY5 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
MGI|MGI:1914060 - symbol:Rbm22 "RNA binding motif protein... 163 2.3e-11 1
UNIPROTKB|E2RG35 - symbol:RBM22 "Uncharacterized protein"... 163 2.4e-11 1
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 163 2.4e-11 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 163 2.6e-11 1
UNIPROTKB|Q3B7L8 - symbol:RBM22 "Pre-mRNA-splicing factor... 162 3.0e-11 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 166 4.2e-11 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 158 5.1e-11 1
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 152 5.8e-11 1
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 159 6.3e-11 1
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 163 9.0e-11 1
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 163 9.0e-11 1
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 163 9.5e-11 1
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 163 9.5e-11 1
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 163 9.5e-11 1
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 163 9.5e-11 1
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 163 9.5e-11 1
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 163 9.6e-11 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 156 1.3e-10 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 155 1.5e-10 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 156 1.6e-10 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 127 2.0e-10 2
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 154 2.1e-10 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 153 2.3e-10 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 153 2.3e-10 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 153 2.4e-10 1
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 158 2.8e-10 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 152 3.1e-10 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 152 3.1e-10 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 152 3.2e-10 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 151 4.1e-10 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 146 6.2e-10 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 150 6.5e-10 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 146 6.5e-10 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 149 6.6e-10 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 148 7.8e-10 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 148 8.5e-10 1
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 143 8.7e-10 1
UNIPROTKB|I3LPZ9 - symbol:SCAF4 "Uncharacterized protein"... 146 9.3e-10 2
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 147 1.5e-09 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 137 2.2e-09 1
UNIPROTKB|I3LKW5 - symbol:RBM22 "Uncharacterized protein"... 143 3.2e-09 1
UNIPROTKB|B0QYV1 - symbol:RBM9 "RNA binding protein fox-1... 142 3.3e-09 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 115 3.3e-09 2
UNIPROTKB|B0QYY4 - symbol:RBFOX2 "RNA-binding protein fox... 142 3.5e-09 1
UNIPROTKB|J9P300 - symbol:RBFOX2 "RNA binding protein fox... 142 3.6e-09 1
UNIPROTKB|F1M2V8 - symbol:Rbm9 "RNA binding protein fox-1... 142 3.6e-09 1
UNIPROTKB|F1LUP8 - symbol:Rbm9 "RNA binding protein fox-1... 142 3.7e-09 1
UNIPROTKB|F1P8W1 - symbol:RBFOX2 "RNA binding protein fox... 142 3.9e-09 1
UNIPROTKB|O43251 - symbol:RBFOX2 "RNA binding protein fox... 142 3.9e-09 1
UNIPROTKB|F1SPT7 - symbol:RBFOX2 "RNA binding protein fox... 142 3.9e-09 1
UNIPROTKB|A6QPR6 - symbol:RBFOX2 "RNA binding protein fox... 142 4.0e-09 1
UNIPROTKB|F1N2A9 - symbol:RBFOX2 "RNA binding protein fox... 142 4.1e-09 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 143 4.4e-09 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 142 4.6e-09 1
UNIPROTKB|F1NCA4 - symbol:RBFOX2 "RNA binding protein fox... 141 4.7e-09 1
RGD|1311838 - symbol:Rbfox2 "RNA binding protein, fox-1 h... 142 4.7e-09 1
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 140 4.8e-09 1
MGI|MGI:1933973 - symbol:Rbfox2 "RNA binding protein, fox... 142 5.1e-09 1
UNIPROTKB|C9JLZ0 - symbol:SCAF4 "Splicing factor, arginin... 147 5.5e-09 1
UNIPROTKB|O95104 - symbol:SCAF4 "Splicing factor, arginin... 147 5.5e-09 1
WARNING: Descriptions of 923 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 114/189 (60%), Positives = 123/189 (65%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK A +SEGD+ NTTIFV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFT-------RSEGDTINTTIFV 310
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPFS++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 121 VRLSWGRNPANKQFRADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXXXXPV 180
VRLSWGRNPANKQ R YGNQW +P P DP M P+
Sbjct: 371 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAPYY----PM 425
Query: 181 YGSHQQQVS 189
YG HQQQVS
Sbjct: 426 YGGHQQQVS 434
Score = 103 (41.3 bits), Expect = 0.00079, P = 0.00079
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 103 NAEEALHKLNGTVIGKQSVRL 123
+A+ ++NG +++R+
Sbjct: 253 ERTKAMTEMNGVKCSSRAMRI 273
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 104/193 (53%), Positives = 122/193 (63%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXX----XXXXXXXXXXXASNGAPGQGPQSEGDSSNT 56
MTEMNGVYCSSR MRIG ATP+K ASNGA G QS+GDSSNT
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNT 295
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI 116
TIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP GKGCGFVQF++R +A+EA+ KL+G +I
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAII 355
Query: 117 GKQSVRLSWGRNPANKQFRADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXX 176
GKQ+VRLSWGR+PANKQ R D G+QW+ D M
Sbjct: 356 GKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGA 415
Query: 177 XXPVYGSHQQQVS 189
YG+HQQ VS
Sbjct: 416 SSNRYGNHQQPVS 428
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 40/110 (36%), Positives = 56/110 (50%)
Query: 45 QGPQSEGDSS--NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGKG--CGFV 96
Q P SS N TI++G L + + L FSQ GE+ SVKI G+ GFV
Sbjct: 71 QSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFV 130
Query: 97 QFANRENAEEALHKLNGTVIG--KQSVRLSW-GRNPANKQFRADYGNQWS 143
+F AE+ L NGT++ +Q RL+W G + K RA+ G+ +S
Sbjct: 131 EFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEK--RAETGSDFS 178
Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
Identities = 30/103 (29%), Positives = 47/103 (45%)
Query: 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQF 98
G + S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F
Sbjct: 167 GEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRF 226
Query: 99 ANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQ 141
+ A+ ++NG +++R+ P Y +Q
Sbjct: 227 GDESERSRAMTEMNGVYCSSRAMRIGVA-TPKKPSAHEQYSSQ 268
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 114/189 (60%), Positives = 123/189 (65%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK NG + P EGD NTTIFV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYM----PNGTLTR-P--EGDIMNTTIFV 308
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPF+++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 121 VRLSWGRNPANKQFRADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXXXXPV 180
VRLSWGRNPANKQ R YGNQW +P P DP M P+
Sbjct: 369 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAPYY----PM 423
Query: 181 YGSHQQQVS 189
YG HQQQVS
Sbjct: 424 YGGHQQQVS 432
Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 103 NAEEALHKLNGTVIGKQSVRL 123
+A+ ++NG +++R+
Sbjct: 251 ERTKAMTEMNGVKCSSRAMRI 271
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 89/143 (62%), Positives = 110/143 (76%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG +CSSR MR+G ATP++ + G G G S+G+S+N+TIFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VT+EDL QPFS +GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNT 391
Query: 121 VRLSWGRNPANKQFRADYGNQWS 143
VRLSWGR+P NKQ+R+D GNQW+
Sbjct: 392 VRLSWGRSP-NKQWRSDSGNQWN 413
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 90/148 (60%), Positives = 112/148 (75%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXX-----XXXXXXXXXXXASNGAPGQGPQSEGDSSN 55
+TEMNG YCS+R MR+G ATP++ SNG+ G G QS+G+S+N
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQFA+R++AE+A+ LNGTV
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 116 IGKQSVRLSWGRNPANKQFRADYGNQWS 143
IGK +VRLSWGR+P NKQ+R D G QW+
Sbjct: 381 IGKNTVRLSWGRSP-NKQWRGDSGQQWN 407
Score = 107 (42.7 bits), Expect = 0.00012, P = 0.00012
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 57 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 109
++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + AL
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 110 KLNGTVIGKQSVRL 123
++NG + +R+
Sbjct: 263 EMNGAYCSNRQMRV 276
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 85/189 (44%), Positives = 104/189 (55%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCSSRPMR G A +K QG E D +NTTIFV
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNT---------QGNSGESDPTNTTIFV 282
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
G +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR AE+AL LNGT +G QS
Sbjct: 283 GAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 121 VRLSWGRNPANKQFRAD---YGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXXXXXXXX 177
+RLSWGR+P+NKQ + D YG A PPP DP+
Sbjct: 343 IRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYA-PPPQDPNAYYGGYAGGG- 400
Query: 178 XPVYGSHQQ 186
YG++QQ
Sbjct: 401 ---YGNYQQ 406
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/106 (31%), Positives = 48/106 (45%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKI----PVG--KGCGFV 96
G G + + + T+FVG L P+VTD L + F Y + K+ G KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLSWGRN--PANKQFRADYGN 140
+FA+ A+ ++NG + +R N P Q A Y N
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ-PASYQN 265
Score = 105 (42.0 bits), Expect = 0.00031, P = 0.00031
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 44 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 96
G G Q+ G + ++++G L P + + L F GE + K+ K G GF+
Sbjct: 67 GGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFI 126
Query: 97 QFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRAD 137
+F N AE L NG + +Q+ RL+W + A ++ +A+
Sbjct: 127 EFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAE 169
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 83/168 (49%), Positives = 99/168 (58%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K A+ P Q Q E D +NTTIFV
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQK-------ATYQNP-QATQGESDPNNTTIFV 286
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +AE+AL LNGT +G QS
Sbjct: 287 GGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 121 VRLSWGRNPANKQF-RADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSM 167
+RLSWGR+P++KQ + +G A PP DP+M
Sbjct: 347 IRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYA-PPAQDPNM 393
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/106 (32%), Positives = 52/106 (49%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFV 96
G G + + DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV
Sbjct: 165 GAGERRD-DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFV 223
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLSWGRN--PANKQFRADYGN 140
+FA+ A+ ++NG + + +R+ N P +A Y N
Sbjct: 224 KFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQN 269
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 85/191 (44%), Positives = 106/191 (55%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCS+RPMRIG A + A+ G + D +NTTIFV
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAG--------DNDPNNTTIFV 264
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL LNGT +G QS
Sbjct: 265 GGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 121 VRLSWGRNPANKQFRADYGNQWSXXXXXXX----XXXXXXXAIPPPNDPSMXXXXXXXXX 176
+RLSWGR+P NKQ +D QW+ A PP DP+
Sbjct: 325 IRLSWGRSP-NKQ--SDQA-QWNGGGYYGYPPQPQGGYGYAAQPPTQDPNAYYGGYTG-- 378
Query: 177 XXPVYGSHQQQ 187
YG++QQQ
Sbjct: 379 ----YGNYQQQ 385
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/98 (33%), Positives = 46/98 (46%)
Query: 38 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------G 90
A GA + Q+EG TIFVG L P VTD L F YG + K+ +
Sbjct: 138 AQAGAGEKRFQTEGPDH--TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRS 195
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128
KG GFV+FA+ A+ ++NG + +R+ N
Sbjct: 196 KGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAAN 233
Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 44 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 96
G G Q+ G +S+ ++++G L + + + F+Q GE S K+ K G GF+
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 97 QFANRENAEEALHKLNGTVIG--KQSVRLSWGRNPAN-KQFRAD 137
+F + AE L NG + +Q+ RL+W + A K+F+ +
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE 150
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 73/133 (54%), Positives = 89/133 (66%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K S+ A G ++ D +NTT+FV
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ-----SSAA---GVTTDNDPNNTTVFV 265
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AEEAL LNG +G +
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTT 325
Query: 121 VRLSWGRNPANKQ 133
VRLSWGR+P+NKQ
Sbjct: 326 VRLSWGRSPSNKQ 338
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 78/198 (39%), Positives = 103/198 (52%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX-----ASNGAPGQG--PQSEGDS 53
M EMNG+YCS+RPMRI AATP+K ++ AP Q E D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 113
+ TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+ ++ G
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 114 TVIGKQSVRLSWGRNPANKQF--RADYGNQWSXXXXXXXXXXXXXXAIPPPNDPSMXXXX 171
VIG+Q+VR+SW +NP + +AD NQW+ A DPS+
Sbjct: 295 QVIGQQAVRISWSKNPGQDGWVTQAD-PNQWNGYYGYGQGYDAY--AYGATQDPSVYAYG 351
Query: 172 XXXXXXXPVYGSHQQQVS 189
P G Q +S
Sbjct: 352 GYGYPQYPQQGEGTQDIS 369
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 231 (86.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 45/87 (51%), Positives = 58/87 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL VT+++LR F +G+I VKIP GKGCGFVQF +R AE A++++
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 112 NGTVIGKQSVRLSWGRNPANKQFRADY 138
G IG VRLSWGR+ N Y
Sbjct: 340 QGYPIGNSRVRLSWGRSQNNSGVGTPY 366
Score = 83 (34.3 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EM GVYC +RPMRI ATP+
Sbjct: 199 LVEMQGVYCGNRPMRISTATPK 220
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 65/143 (45%), Positives = 81/143 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASN-----GAPGQG----PQSEG 51
++EM GVYC +RPMRI ATP+ + GAP G PQ
Sbjct: 219 LSEMQGVYCGNRPMRISTATPKNKGPGVVPGGMGMPGPAGMYPPMGAPPMGFYGAPQPMN 278
Query: 52 ---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
D +NTT+FVGGL VT+++LR F +GEI VKIP GKGCGFVQF R AE A+
Sbjct: 279 QFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAI 338
Query: 109 HKLNGTVIGKQSVRLSWGRNPAN 131
+++ G IG VRLSWGR+ N
Sbjct: 339 NQMQGYPIGNSRVRLSWGRSQNN 361
Score = 102 (41.0 bits), Expect = 0.00096, P = 0.00096
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 42 APGQGPQS---EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG---- 94
APG+G + +G+ TT+++G L+P + + +R + Q GE +VK+ K G
Sbjct: 48 APGEGAPAVAQQGNEGKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNA 107
Query: 95 ---FVQFANRENAEEALHKLNGTVIGKQS--VRLSW--GRNPANKQFRADYGNQWS 143
FV FA+ A +AL LNGT + + +L+W G A++ R D G ++S
Sbjct: 108 GYCFVDFASPAAAAKAL-SLNGTPMPNTNRLFKLNWATGGGLADRS-RDDRGPEYS 161
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 277 (102.6 bits), Expect = 9.5e-24, P = 9.5e-24
Identities = 57/131 (43%), Positives = 78/131 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR-KXXXXXXXXXXXXXXASNG--APGQGPQSEGDSSNTT 57
+ EM G C RP+R+G ATP+ K G + Q D++N+T
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST 304
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++L G +G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 118 KQSVRLSWGRN 128
+RLSWGRN
Sbjct: 365 NSRIRLSWGRN 375
Score = 118 (46.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/102 (34%), Positives = 53/102 (51%)
Query: 40 NGAPGQG--PQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---P---VG 90
N A G G +S +S +IFVG L PNV + D+ F S+Y S KI P V
Sbjct: 168 NWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVS 227
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132
+G GFV+F + + + AL ++ G + G + +R+ P +K
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA-TPKSK 268
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 228 (85.3 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 48/98 (48%), Positives = 64/98 (65%)
Query: 45 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 104
QG Q D +NTT+FVGGL +V++ L F +G I VKIP GK CGFV+++NRE A
Sbjct: 511 QGQQFV-DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEA 569
Query: 105 EEALHKLNGTVIGKQSVRLSWGR-NPANKQFRADYGNQ 141
EEA+ + G VIG VRLSWGR + +NK+++ Q
Sbjct: 570 EEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQ 607
Score = 66 (28.3 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EMNG + + RP+R+ ATPR
Sbjct: 314 LIEMNGAWFAGRPLRVALATPR 335
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 261 (96.9 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 50/130 (38%), Positives = 74/130 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX--XXASNGAPGQGPQSEGDSSNTTI 58
+ M G C RP+RI A+P+ SN P Q S D NTT+
Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSM-DPLNTTV 299
Query: 59 FVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK 118
FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++ + G ++G
Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGT 359
Query: 119 QSVRLSWGRN 128
+RL+WG N
Sbjct: 360 SHIRLAWGHN 369
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 206 (77.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 112 NGTVIGKQSVRLSWGRNPANKQFRAD 137
G ++G +RLSWGR P++ + +
Sbjct: 416 QGFIVGGSPIRLSWGR-PSSSNAKTN 440
Score = 49 (22.3 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+ EM+G + R +R+ ATPR
Sbjct: 251 LIEMSGKWFQGRALRVAYATPR 272
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 207 (77.9 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 112 NGTVIGKQSVRLSWGRN 128
G I VRLSWGR+
Sbjct: 369 QGFPIANSRVRLSWGRS 385
Score = 106 (42.4 bits), Expect = 0.00029, P = 0.00029
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 106
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 107 ALHKLNGTVIGKQSVRL 123
AL ++ G + +++++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
Score = 42 (19.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 1 MTEMNGVYCSSRPMRIG 17
++EM GV+ + R +++G
Sbjct: 222 LSEMQGVFLNGRAIKVG 238
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 176 (67.0 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N +I + + + WGR+ A
Sbjct: 288 FNKLIINGRRLNVKWGRSQA 307
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 175 (66.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 108 LHKL-NGTVIGKQSVRLSWGR 127
+L N VI Q ++L+WGR
Sbjct: 280 AQELSNRLVINGQRLKLTWGR 300
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 108 LHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQ 141
+L N V+ Q ++L+WGR K + D NQ
Sbjct: 280 AEELSNRLVVNGQRLKLTWGRPQVPKPDQ-DGSNQ 313
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 75 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 134
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 135 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 174
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 155 (59.6 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---P---VGKGCGF 95
+PG P+++ SS+ IFVG L P + E LR+ F+ +GEI++ +I P KG F
Sbjct: 82 SPGNQPKTD-ISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAF 140
Query: 96 VQFANRENAEEALHKLNGTVIGKQSVRLSW 125
V F + AE A+ +NG IG +S+R +W
Sbjct: 141 VSFVKKAEAENAIQAMNGQWIGSRSIRTNW 170
Score = 141 (54.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 42/139 (30%), Positives = 64/139 (46%)
Query: 4 MNGVYCSSRPMRIGAAT-----PRKXXXXXXXXXXXXXXASNGAPGQGPQ--------SE 50
MNG + SR +R +T PR+ NG+ +G Q ++
Sbjct: 156 MNGQWIGSRSIRTNWSTRKLPPPREPSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQ 215
Query: 51 GDSSNTTIFVGGLDPNVTDEDL-RQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL- 108
+NTT++ GG PNV +DL + F Q+G I V++ KG F++F +E A A+
Sbjct: 216 SSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIE 275
Query: 109 HKLNGTVIGKQSVRLSWGR 127
H N V G V+ WG+
Sbjct: 276 HTHNSEVHGNL-VKCFWGK 293
Score = 110 (43.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKGCGFVQFANRENAEEAL 108
+S T++VG LD +V+++ L FS G + S KI P F++++N + A AL
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTAL 62
Query: 109 HKLNGTVIGKQSVRLSWGRNPANK 132
+N + ++ ++++W +P N+
Sbjct: 63 TAMNKRLFLEKEIKVNWATSPGNQ 86
Score = 36 (17.7 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 159 IPPPNDPS 166
+PPP +PS
Sbjct: 175 LPPPREPS 182
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 163 (62.4 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 163 (62.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 163 (62.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 179 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 238
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 239 FNKLIVNGRRLNVKWGRSQA 258
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 163 (62.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 258 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 297
Score = 143 (55.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 105
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 106 EALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
AL +NG ++GK+ V+++W P++++
Sbjct: 63 AALAAMNGRKILGKE-VKVNWATTPSSQK 90
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 214 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 273
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 274 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 313
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 97 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 156
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 157 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 193
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 163 (62.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR-ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 275 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
Score = 143 (55.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 230 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 289
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 290 FNKLIVNGRRLNVKWGRSQA 309
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 163 (62.4 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 264 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 321
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 322 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 356
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 162 (62.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKFIVNGRRLNVKWGRSQA 307
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 166 (63.5 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV------- 89
S+ + G GD + T +++G L+P ++++ L + F +YG +AS+KI P
Sbjct: 199 SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQR 258
Query: 90 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
G+ CGFV + +R++AE AL LNG I +RL WG+
Sbjct: 259 GRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGK 296
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 158 (60.7 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFVGG 62
+MNG + R +R AT RK +S + ++ SN T++ GG
Sbjct: 157 QMNGQWLGGRQIRTNWAT-RKPSAPKSNNEGA---SSKHLSYEEVLNQSSPSNCTVYCGG 212
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122
+ ++D+ +RQ FS +G+I +++ KG FV+F + E A A+ +NGT I +V+
Sbjct: 213 IASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVK 272
Query: 123 LSWGRNPAN 131
WG+ A+
Sbjct: 273 CYWGKETAD 281
Score = 149 (57.5 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P ++ +D+R F+ +G+I+ ++ GK G
Sbjct: 81 NWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPA 130
GF+ F N+ +AE A+ ++NG +G + +R +W R P+
Sbjct: 141 GFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPS 178
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 41 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 100
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYGN---QW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 101 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQAYGQW 143
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 159 (61.0 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 163 (62.4 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 219 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 276
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 277 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 311
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 163 (62.4 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 218 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 275
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 276 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 310
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 163 (62.4 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 92
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 262 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 319
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 320 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 156 (60.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 34/107 (31%), Positives = 62/107 (57%)
Query: 43 PGQGPQSEGDSS-NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGF 95
PGQ QS+ D++ + +FVG L V ++ LR+ F +G+++ K+ KG GF
Sbjct: 122 PGQ-QQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGF 180
Query: 96 VQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQFRADYGNQ 141
V + RE AE A+ ++NG +G++++R +W R P +++ + Y +
Sbjct: 181 VSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEK 227
Score = 153 (58.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 33/93 (35%), Positives = 57/93 (61%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
Q+ GD NT+++VG + ++T++++RQ F+ +G I V+I +G FV+F N++ A +A
Sbjct: 235 QTSGD--NTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 291
Query: 108 LHKLNGTVIGKQSVRLSWGRN-PANKQFRADYG 139
+ ++N +G Q VR SWG+ K YG
Sbjct: 292 IVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYG 324
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKG--CGFVQFANRENAEEA 107
G T++VG LD VT++ + F+Q G + K+ G FV+F++ A +A
Sbjct: 41 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQA 100
Query: 108 LHKLNGTVIGKQSVRLSWGRNPANKQFRAD 137
L +N ++ + ++++W P +Q + D
Sbjct: 101 LQTMNKRLLLDREMKVNWAVEPGQQQSKID 130
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYG---NQW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQW 309
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 156 (60.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
+ NT+++VG + TD DLR FS YG+IA V+I + FV++ +E A +A+ ++N
Sbjct: 324 ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMN 383
Query: 113 GTVIGKQSVRLSWGRNPA 130
G + VR SWGR A
Sbjct: 384 GKEMAGNQVRCSWGRTQA 401
Score = 153 (58.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEE 106
S + +FVG L +V++E L+ F+++GE++ K+ KG GFV F N++NAE
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 107 ALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
A+ +NG IGK++VR +W +++ R
Sbjct: 282 AIAGMNGKWIGKRAVRTNWAARKNSEENR 310
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 127 (49.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 36/110 (32%), Positives = 58/110 (52%)
Query: 40 NGAPGQGPQSEGDSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV-- 89
NG G+ S+ D+S +FVGGL + T +DL+ F+++GE+ ++K+ P+
Sbjct: 33 NGGQGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTG 92
Query: 90 -GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
+G GFV F E+ E+ + HKLNG VI + + + P K F
Sbjct: 93 RSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIF 142
Score = 102 (41.0 bits), Expect = 0.00066, P = 0.00066
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL P+ +E +R+ F YGE+ S+++P+ +G F+ F E ++ + K
Sbjct: 141 IFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKK 200
Query: 112 NGTV-IGKQSVRLSWGRNPANKQ 133
+ + K V+++ + +Q
Sbjct: 201 YHNIGLSKCEVKVAMSKEQYQQQ 223
Score = 44 (20.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 126 GRNPANKQFRADYGNQWS 143
GR N+ + YGN W+
Sbjct: 238 GRGGPNQNWNQGYGNYWN 255
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPN----VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQ 97
AP P + D++ TT+++G L P+ VT++DL F QYG+I +++ KGC F++
Sbjct: 223 APTLSPPA--DTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIE 280
Query: 98 FANRENAEEALHK-LNGTVIGKQSVRLSWGRNPANKQFRADYGN 140
F RE AE A + N T I + + + WG A + AD N
Sbjct: 281 FTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRA--ADNSN 322
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 32/103 (31%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 196 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 255
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYG---NQW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 256 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQW 298
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ ++ G +G + +R +W R P
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 175
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 109 HKLNGTVIGKQSVRLSWGR-NP-ANKQFR------ADYGN--QWS 143
+NGT I V+ WG+ +P K F+ DY QWS
Sbjct: 258 VSVNGTTIEGHVVKCYWGKESPDMTKNFQQVIRFFVDYSQWGQWS 302
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 105
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 106 EALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
AL +NG ++GK+ V+++W P++++
Sbjct: 63 AALAAMNGRKILGKE-VKVNWATTPSSQK 90
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 32/103 (31%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 203 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 262
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYG---NQW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 263 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQW 305
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 164 GGQWLGGRQIRTNWATRKP 182
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 158 (60.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 90
+ APG GD + T +++G ++P + +E L Q F +YG +ASVKI P
Sbjct: 194 DSAPGS--HDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKIMWPRTDEERARE 251
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
+ CGFV F R +AE AL LNG +I ++L WG+
Sbjct: 252 RNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWGK 288
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYGN---QW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQAYGQW 309
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYGN---QW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQW 309
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 152 (58.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQFRADYGN---QW 142
+NGT I V+ WG+ NP +Q + Y QW
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQAYGQW 309
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 151 (58.2 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ N T++ GG+ +T+ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 216 NQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAI 275
Query: 109 HKLNGTVIGKQSVRLSWGR-NP--ANKQFRADYGNQW 142
+NGT I V+ WG+ +P A +YG QW
Sbjct: 276 VSVNGTTIEGHVVKCYWGKESPDMAKNVQPMEYG-QW 311
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/110 (30%), Positives = 58/110 (52%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T +D+R F+ +G+I+ ++ GK G
Sbjct: 99 NWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGY 158
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG--RNPANKQFRADYGNQ 141
GFV F N+ +AE A+ + G +G + +R +W + PA K + + Q
Sbjct: 159 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQ 208
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 146 (56.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 75 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 134
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ ++ G +G + +R +W R P
Sbjct: 135 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 171
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 150 (57.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFV 96
PG+ S + +FVG L + LR+ F ++GE++ KI GKG GFV
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
+ RE+AE A+ ++NG +G++++R +W R P
Sbjct: 179 SYPRREDAERAIDEMNGAWLGRRTIRTNWATRKP 212
Score = 139 (54.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/138 (29%), Positives = 67/138 (48%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGP---QSE--------- 50
EMNG + R +R AT RK G G+ QSE
Sbjct: 192 EMNGAWLGRRTIRTNWAT-RKPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQ 250
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 110
+ NT+++VG + N+ ++++R+ F ++G I V+ +G FV+F +E+A A+ +
Sbjct: 251 AAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQ 309
Query: 111 LNGTVIGKQSVRLSWGRN 128
+N IG Q VR SWG++
Sbjct: 310 MNNADIGGQIVRCSWGKS 327
Score = 113 (44.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 30/93 (32%), Positives = 47/93 (50%)
Query: 42 APGQGPQ-SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FV 96
A +G Q + G T+FV LDP +TDE L F+Q G + KI + +G FV
Sbjct: 25 AEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKI-IFEGLNDPYAFV 83
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129
+F++ A AL NG + ++ + ++W P
Sbjct: 84 EFSDHNQATLALQSHNGRELLEKEMHVTWAFEP 116
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 146 (56.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ ++ G +G + +R +W R P
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 175
Score = 101 (40.6 bits), Expect = 0.00084, P = 0.00084
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
AL +NG ++GK+ V+++W P++++
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQK 88
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 149 (57.5 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 109 HKLNGTVIGKQSVRLSWGR------NPANKQ---FRADYGNQW 142
+NGT I V+ WG+ NP + + YG QW
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQNQIGYPQPYG-QW 308
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 148 (57.2 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 255
Query: 109 HKLNGTVIGKQSVRLSWGR 127
+NGT I V+ WG+
Sbjct: 256 VSVNGTTIEGHVVKCYWGK 274
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ ++ G +G + +R +W R P
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 175
Score = 102 (41.0 bits), Expect = 0.00088, P = 0.00088
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAS 61
Query: 107 ALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
AL +NG ++GK+ V+++W P++++
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQK 88
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T +D+R F+ +G I+ ++ GK G
Sbjct: 80 NWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGY 139
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ ++ G +G + +R +W R P
Sbjct: 140 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 176
Score = 145 (56.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ SN T++ GG+ +T++ +RQ FS +G+I V++ KG FV+F + E+A A+
Sbjct: 197 NQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAI 256
Query: 109 HKLNGTVIGKQSVRLSWGR 127
+NGT + V+ WG+
Sbjct: 257 VSVNGTSLEGHIVKCYWGK 275
Score = 102 (41.0 bits), Expect = 0.00093, P = 0.00093
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
D T++VG L +VT+ + Q F Q G S K+ V C FV+F +A
Sbjct: 4 DEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYC-FVEFFEHRHAAA 62
Query: 107 ALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
+L +NG ++GK+ V+++W +P++++
Sbjct: 63 SLAAMNGRKIMGKE-VKVNWATSPSSQK 89
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 143 (55.4 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 30/96 (31%), Positives = 55/96 (57%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108
++ S N T++ GG+ +TD+ +RQ FS +G+I +++ K FV+F+ +A A+
Sbjct: 76 NQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSFVRFSTHGSAAHAI 135
Query: 109 HKLNGTVIGKQSVRLSWGR-NPANKQFRADYGNQWS 143
+ GT I + V+ WG+ +P + + +G QWS
Sbjct: 136 VSVTGTTIEGRVVKCYWGKESPDMTENYSRWG-QWS 170
>UNIPROTKB|I3LPZ9 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:FP325217
EMBL:FP325269 Ensembl:ENSSSCT00000030551 Uniprot:I3LPZ9
Length = 1132
Score = 146 (56.5 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 32/104 (30%), Positives = 57/104 (54%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 501 GLPQIKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 559
Query: 101 RENAEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
R++A AL KL+ G + ++S++++W NK +ADY W
Sbjct: 560 RQDAYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 600
Score = 34 (17.0 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQ 48
AA P A G PG G Q
Sbjct: 306 AAVPAAAAAAAAATAASPPQAPFGFPGDGMQ 336
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQ-SEGDSSNTTIF 59
+ +MNG Y +++P+++ T ++ N P + D +NT I+
Sbjct: 172 LIDMNGFYINNKPIKVNNPTHKRL---------------NSQTSTIPDLTSTDPNNTAIY 216
Query: 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ 119
V LD + + L+ F YGEI+ +K+ K FV F NRE+AE A LN +G
Sbjct: 217 VSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAFG-LNNFPVGNT 275
Query: 120 SVRLSWGRNPA 130
+++ WG+N A
Sbjct: 276 RLKVQWGKNVA 286
Score = 108 (43.1 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 26/99 (26%), Positives = 53/99 (53%)
Query: 45 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKI------PVGKGCGFVQ 97
Q Q + S+ ++++G L +VTD+ L F +Y + S ++ + +G GFV+
Sbjct: 102 QQQQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVK 161
Query: 98 FANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRA 136
FA+ ++AL +NG I + ++++ NP +K+ +
Sbjct: 162 FASDVEKDKALIDMNGFYINNKPIKVN---NPTHKRLNS 197
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
Score = 101 (40.6 bits), Expect = 0.00044, P = 0.00044
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGT-VIGKQSVRLSWGRNPANKQ 133
AL +NG ++GK+ V+++W P++++
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQK 88
>UNIPROTKB|I3LKW5 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090316 "positive regulation of intracellular protein
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0036002 "pre-mRNA binding" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA]
[GO:0000060 "protein import into nucleus, translocation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 GeneTree:ENSGT00390000002792
Ensembl:ENSSSCT00000022932 Uniprot:I3LKW5
Length = 402
Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL + +++L F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 210 DKTITTLYVGGLGRDGVEKNLPNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 269
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 270 FNKLIVNGRRLNVKWGRSQA 289
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 142 (55.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 72 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 131
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 132 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 184
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 115 (45.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 163
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 164 MNGKEISGK 172
Score = 34 (17.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 70 KMNGMLLNDRKVFVGRFKSRK 90
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 142 (55.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 71 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 130
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 131 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 183
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 203
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 203
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 142 (55.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 91 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 150
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 151 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 203
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 101 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 213
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 101 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 160
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 161 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 213
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 107 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 166
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 167 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 219
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 142 (55.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 109 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 221
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 142 (55.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 109 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 168
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 169 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 221
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 143 (55.4 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-PV----GKGC--G 94
A G ++ + + ++VGGLDP VT++ L+Q F G + SVKI P KG G
Sbjct: 76 AGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYG 135
Query: 95 FVQFANRENAEEALHKLNGTVIGKQSVRLSWG--RNPANKQ 133
FV+F + AE A+ LNG I + +R++W N ANK+
Sbjct: 136 FVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKE 176
Score = 131 (51.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANREN 103
E S++ IFVG L V DE L Q FS +G ++ ++ G+ G GFV F R +
Sbjct: 176 EDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD 235
Query: 104 AEEALHKLNGTVIGKQSVRLSW 125
AE+AL ++G +G +++R +W
Sbjct: 236 AEKALTSMDGEWLGSRAIRCNW 257
Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TT +VG L P T D+ F +G + ++ +G F++ ENA A+ +LNG
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYN 367
Query: 116 IGKQSVRLSWGRN-PANKQFRADYGNQ 141
+ + ++ SWG++ P QF G Q
Sbjct: 368 VNGRPLKCSWGKDRPPTGQFDNFPGQQ 394
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 142 (55.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A G Q E SS+ IFVG L P VTD L Q FS + + ++ G+ G
Sbjct: 129 NWAYATG-QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGF 187
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130
GFV F N+++A+ A++++NG + + +R +W A
Sbjct: 188 GFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/140 (28%), Positives = 60/140 (42%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXA--SNGAPGQGPQS------EGD 52
+ EMNG + SSR +R AT + G+ G ++ E +
Sbjct: 202 INEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENN 261
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANRENAEEALHK 110
S TT++VG L P VT DL + F G I V++ KG GFV++ A A+
Sbjct: 262 SQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQM 321
Query: 111 LNGT-VIGKQSVRLSWGRNP 129
N + + ++ SWG P
Sbjct: 322 GNTQPYLFNRQIKCSWGNKP 341
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 141 (54.7 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 92 TDGQQSQTQSSENTESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 151
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 152 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 204
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 142 (55.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 143 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 202
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 203 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 255
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 140 (54.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PV-GKGCGFVQFANRENAEE 106
D N+ ++VGGL ++T+E +R+ FS YG + +VKI V GK GFV F+NR +A++
Sbjct: 4 DDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADD 62
Query: 107 ALHKLNGTVIGKQSVRLS 124
A+ ++G IG ++VR++
Sbjct: 63 AIEDMDGKSIGGRAVRVN 80
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 142 (55.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 160 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 219
Query: 92 GCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
G GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 220 GFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 272
>UNIPROTKB|C9JLZ0 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
RefSeq:NP_001138916.1 UniGene:Hs.17255 GeneID:57466 KEGG:hsa:57466
CTD:57466 HGNC:HGNC:19304 HOGENOM:HOG000143432 KO:K13167
GenomeRNAi:57466 NextBio:63678 EMBL:AP000254 EMBL:AP000255
IPI:IPI00923625 SMR:C9JLZ0 STRING:C9JLZ0 Ensembl:ENST00000434667
UCSC:uc010glu.2 Uniprot:C9JLZ0
Length = 1132
Score = 147 (56.8 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 32/104 (30%), Positives = 57/104 (54%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 479 GLPQVKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 537
Query: 101 RENAEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
R++A AL KL+ G + ++S++++W NK +ADY W
Sbjct: 538 RQDAYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 578
>UNIPROTKB|O95104 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AF023142 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG306894 EMBL:AL834304 EMBL:AL117417 EMBL:AP001711
EMBL:BC014921 EMBL:BC052286 EMBL:BC064990 EMBL:AB032998
IPI:IPI00181702 IPI:IPI00397794 RefSeq:NP_001138916.1
RefSeq:NP_001138917.1 RefSeq:NP_065757.1 UniGene:Hs.17255
ProteinModelPortal:O95104 SMR:O95104 IntAct:O95104
MINT:MINT-1692995 STRING:O95104 PhosphoSite:O95104 PaxDb:O95104
PRIDE:O95104 Ensembl:ENST00000286835 Ensembl:ENST00000399804
GeneID:57466 KEGG:hsa:57466 UCSC:uc002ypd.2 UCSC:uc002ype.2
CTD:57466 GeneCards:GC21M033044 HGNC:HGNC:19304 HPA:HPA018319
HPA:HPA018668 HPA:HPA021504 HPA:HPA028807 neXtProt:NX_O95104
PharmGKB:PA134903281 HOGENOM:HOG000143432 HOVERGEN:HBG055644
InParanoid:O95104 KO:K13167 OMA:QDPVHHQ OrthoDB:EOG498V17
GenomeRNAi:57466 NextBio:63678 ArrayExpress:O95104 Bgee:O95104
CleanEx:HS_SFRS15 Genevestigator:O95104 GermOnline:ENSG00000156304
Uniprot:O95104
Length = 1147
Score = 147 (56.8 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 32/104 (30%), Positives = 57/104 (54%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 494 GLPQVKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 552
Query: 101 RENAEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
R++A AL KL+ G + ++S++++W NK +ADY W
Sbjct: 553 RQDAYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 593
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 146 (56.5 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
+S + I++G + N+ ++++R+ +YGEI S++I K C FV F N NA AL L
Sbjct: 1007 NSISRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTL 1066
Query: 112 NGTVIGKQSVRLSWGR 127
NG +G VR+++G+
Sbjct: 1067 NGKKLGDTIVRVNYGK 1082
Score = 121 (47.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
G G + E + ++VG + +V+++DL+ F +GE+ SV+I K C FV F +
Sbjct: 903 GDG-EDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNE 961
Query: 104 AEEALHKLNGTVIGKQSVRLSWGRNPANKQF 134
A A ++ V+G Q + +++ R+P + F
Sbjct: 962 AINAKKGMHNQVLGSQYIVVNF-RHPKSDDF 991
>UNIPROTKB|F1Q448 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AAEX03016485
Ensembl:ENSCAFT00000014079 Uniprot:F1Q448
Length = 1126
Score = 146 (56.5 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 32/104 (30%), Positives = 57/104 (54%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 481 GLPQIKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 539
Query: 101 RENAEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
R++A AL KL+ G + ++S++++W NK +ADY W
Sbjct: 540 RQDAYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 580
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 144 (55.7 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 43/139 (30%), Positives = 68/139 (48%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFV 60
+T MNG + SR +R AT + N QS SN T++V
Sbjct: 519 ITAMNGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYN-------QSS--PSNCTVYV 569
Query: 61 GGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
GG++ +T +E L++ F+ YG I +++ KG FV+F+ +E A A+ ++ T I
Sbjct: 570 GGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEIN 629
Query: 118 KQSVRLSWGR---NPANKQ 133
Q V+ SWG+ +P N Q
Sbjct: 630 AQPVKCSWGKESGDPNNAQ 648
Score = 137 (53.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 111
IFVG L + + LR+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 112 NGTVIGKQSVRLSWG--RNPANKQ 133
NG +G +S+R +W + PA+K+
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKE 546
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALH 109
GD T ++VG L V +DL F++YG++ SV I G FV+F +R++AE+A
Sbjct: 2 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACD 61
Query: 110 KLNGT-VIGKQ-SVRLSWGR 127
LNG+ ++G Q V +S GR
Sbjct: 62 ILNGSELLGSQLRVEISKGR 81
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 119 (46.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 224
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 225 RIVATKPLYVALAQRKEERQ--AHLTNQY 251
Score = 34 (17.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 29 KMNGMLLNDRKVFVGRFKSRK 49
>UNIPROTKB|F1MTX3 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:DAAA02000059
IPI:IPI00711648 Ensembl:ENSBTAT00000025104 Uniprot:F1MTX3
Length = 1148
Score = 144 (55.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/101 (29%), Positives = 58/101 (57%)
Query: 47 PQSEGDSSN---TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
PQ + ++++ TT++VG LD T +D+ ++G I S+ + +GC ++ +R++
Sbjct: 500 PQIKAETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQD 559
Query: 104 AEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
A AL KL+ G + ++S++++W NK +ADY W
Sbjct: 560 AYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 597
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 90
+G PG +GD T ++VG L P V + L + F ++G IASVKI P
Sbjct: 165 SGRPGSF--DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQ 222
Query: 91 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
+ CGFV F NR + + A ++ G ++ + +++ WG+
Sbjct: 223 RNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGK 259
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 123 (48.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
++V LD +V + L + FS++G I S K+ V KG GFV+F+ E A +A+ K+N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 113 GTVIGKQSVRLS 124
G ++G + + +S
Sbjct: 285 GKMVGNKPIYVS 296
Score = 113 (44.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVGKG----CGFVQFANRENAEEALHK 110
T ++V L TD DL++ F ++GEI S V + G+G GFV F E A A+ K
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
+NG V+ ++ + + + N+
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNR 200
Score = 35 (17.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 3 EMNGVYCSSRPMRIGAA 19
+MNGV + + +G A
Sbjct: 178 KMNGVVVDEKELHVGRA 194
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 112 NGTVIGKQSVRLSWGRNPANKQFRADY 138
NG + + +R+ +N + R Y
Sbjct: 68 NGKSVDGRQIRVDQAGKSSNDR-RGGY 93
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 132 (51.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 102 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 161
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 162 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 213
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 117 (46.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASV-KIP-----VGKGCGFVQFANRENAEEALHKL 111
+FVG LDP VT++ L FS++G + ++ K+ + KG GFV FA+ E+++ A+ +
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 112 NGTVIGKQSVRLSWGRNPANKQFR-ADYGNQWSXXXXXXXXXXXXXXAIPP----PNDPS 166
NG + + V + + K R D + A+PP P P+
Sbjct: 163 NGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQARKHNVQVPTQALPPQFTAPAAPA 222
Query: 167 M 167
M
Sbjct: 223 M 223
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 4 MNGVYCSSRPMRIGAATPRK 23
MNG+ +P+R+ A+ K
Sbjct: 74 MNGIRLYGKPIRVNKASADK 93
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 124 (48.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
+FVG L ++TDED ++ F++YGE V I GKG GF++ +R AE A +L+ T +
Sbjct: 239 LFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMR 298
Query: 118 KQSVRLSWGRNPA 130
+ +R+ + + A
Sbjct: 299 GRQLRVRFATHAA 311
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 41 GAPGQGPQSE 50
G PG GP+SE
Sbjct: 57 GPPGGGPKSE 66
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 121 (47.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 28/89 (31%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ F+ YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGTKPLYVALAQRKEER--KAILTNQY 382
Score = 104 (41.7 bits), Expect = 0.00089, P = 0.00089
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVGK----GCGFVQFANRENAEEALHK 110
+++VG L P+VT+ L + FS G I S+++ V G ++ F +AE AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 111 LNGTVIGKQSVRLSWG-RNPANKQFRADYGN 140
+N VI Q +R+ W R+P + ++ GN
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLR--KSGVGN 100
Score = 41 (19.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+T+MNG S R + +G A R
Sbjct: 248 VTDMNGKEVSGRLLYVGRAQKR 269
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 137 (53.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VG L +T+ +LR F Q+GEI S+ + + C FVQ+ R AE A +
Sbjct: 228 DRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERT 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N VI + V + W + A +
Sbjct: 288 FNKLVIQGRKVSIKWAHSQAKQ 309
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 42 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 101
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVR 122
GFV F N+ +AE A+ + G +G + +R
Sbjct: 102 GFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 97 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 156
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 157 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 208
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 209
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 41/133 (30%), Positives = 66/133 (49%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSS--NTTI 58
+T MNG + SR +R AT RK N P + SS N T+
Sbjct: 154 ITAMNGQWLGSRSIRTNWAT-RKPPATKADM--------NAKPLTFDEVYNQSSPTNCTV 204
Query: 59 FVGGLDPNVT----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
+ GG++ ++ +E L++ FS YG I +++ KG FV+F+ +E A A+ +N T
Sbjct: 205 YCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNT 264
Query: 115 VIGKQSVRLSWGR 127
I +Q V+ +WG+
Sbjct: 265 EINQQPVKCAWGK 277
Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 111
IFVG L + + L+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 112 NGTVIGKQSVRLSWG--RNPANK 132
NG +G +S+R +W + PA K
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATK 180
>ZFIN|ZDB-GENE-030131-4817 [details] [associations]
symbol:wu:fd99c08 "wu:fd99c08" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046660 "female sex differentiation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4817 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0046660 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:CABZ01087003 EMBL:CABZ01087004
EMBL:CABZ01087005 EMBL:CABZ01088109 EMBL:CU499333 IPI:IPI00900531
Ensembl:ENSDART00000112675 Bgee:E7FF46 Uniprot:E7FF46
Length = 1286
Score = 141 (54.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC ++ +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTG 535
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W N KQ +Y W
Sbjct: 536 SYKIGSKVIKIAWALNKGVKQ---EYKQFW 562
>RGD|727896 [details] [associations]
symbol:Scaf4 "SR-related CTD-associated factor 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:727896 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000143432 OrthoDB:EOG498V17 EMBL:U49058 IPI:IPI00211011
PIR:T31425 UniGene:Rn.101886 ProteinModelPortal:Q63627
STRING:Q63627 UCSC:RGD:727896 eggNOG:NOG326061 InParanoid:Q63627
ArrayExpress:Q63627 Genevestigator:Q63627
GermOnline:ENSRNOG00000002104 Uniprot:Q63627
Length = 1048
Score = 140 (54.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/101 (28%), Positives = 58/101 (57%)
Query: 47 PQSEGDSSN---TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
PQ + ++++ TT++VG LD T +D+ ++G I S+ + +GC ++ +R++
Sbjct: 410 PQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQD 469
Query: 104 AEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
A AL KL+ G + ++S++++W NK +AD+ W
Sbjct: 470 AYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADFKQYW 507
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 141 (54.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 477 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSG 536
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 537 SYKIGSKIIKIAWA---LNKGVKTEYKQFW 563
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 114 (45.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F ++GEI ++++P+ +G F+ F E ++ L K
Sbjct: 86 IFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKK 145
Query: 112 NGTVIGKQSVRLSWG 126
T+ G + L G
Sbjct: 146 FHTISGSKRCGLGVG 160
Score = 34 (17.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 126 GRNPANKQFRADYGNQWS 143
G ++ + YGN W+
Sbjct: 192 GSGSQSQSWNQGYGNYWN 209
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 124 (48.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 257
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 258 RIVGSKPLYVALAQRKEER--KAHLTNQY 284
Score = 115 (45.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 153 MNGKEISGK 161
Score = 113 (44.8 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 62
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 63 MLLNDRKVFV--GRFKSRKEREAELG 86
Score = 34 (17.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 59 KMNGMLLNDRKVFVGRFKSRK 79
>UNIPROTKB|F1LTF2 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00950875 PRIDE:F1LTF2 Ensembl:ENSRNOT00000042311
ArrayExpress:F1LTF2 Uniprot:F1LTF2
Length = 1214
Score = 140 (54.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/101 (28%), Positives = 58/101 (57%)
Query: 47 PQSEGDSSN---TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
PQ + ++++ TT++VG LD T +D+ ++G I S+ + +GC ++ +R++
Sbjct: 561 PQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQD 620
Query: 104 AEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
A AL KL+ G + ++S++++W NK +AD+ W
Sbjct: 621 AYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADFKQYW 658
>UNIPROTKB|F1LSM7 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211011
Ensembl:ENSRNOT00000047741 ArrayExpress:F1LSM7 Uniprot:F1LSM7
Length = 1226
Score = 140 (54.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/101 (28%), Positives = 58/101 (57%)
Query: 47 PQSEGDSSN---TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 103
PQ + ++++ TT++VG LD T +D+ ++G I S+ + +GC ++ +R++
Sbjct: 566 PQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQD 625
Query: 104 AEEALHKLN-GTV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
A AL KL+ G + ++S++++W NK +AD+ W
Sbjct: 626 AYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADFKQYW 663
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 134 (52.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 43/140 (30%), Positives = 63/140 (45%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXA--SNGAPGQGPQ-SEGDS--SN 55
+ EMNG + SSR +R AT +NG+ G + S D+ +N
Sbjct: 210 INEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENN 269
Query: 56 ---TTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANRENAEEALHK 110
TT++VG L P VT DL + F G I V++ KG GFV++ + A A+
Sbjct: 270 PQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQM 329
Query: 111 LNGT-VIGKQSVRLSWGRNP 129
N + + +R SWG P
Sbjct: 330 GNAQPFLFSRQIRCSWGNKP 349
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV----------KIPV 89
N A G Q E SS+ IFVG L P VTD L FS + +S K
Sbjct: 133 NWAYATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGR 191
Query: 90 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130
+G GFV F N+++A+ A++++NG + + +R +W A
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 140 (54.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 472 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 531
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 532 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 558
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 140 (54.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 536 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 562
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 140 (54.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 536 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 562
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 124 (48.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 285 RIVGSKPLYVALAQRKEER--KAHLTNQY 311
Score = 115 (45.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NG + +S+ + + +Q
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQ 202
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A +A+ K+NG
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 89
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 90 MLLNDRKVFV--GRFKSRKEREAELG 113
Score = 34 (17.0 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRK 106
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 127 (49.8 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 140 (54.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 542 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 601
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 602 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 628
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 140 (54.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 554 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 613
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 614 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 640
>UNIPROTKB|F1M994 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 IPI:IPI00454233
Ensembl:ENSRNOT00000002881 ArrayExpress:F1M994 Uniprot:F1M994
Length = 917
Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 27/90 (30%), Positives = 52/90 (57%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG LD T +D+ ++G I S+ + +GC ++ +R++A AL KL+ G
Sbjct: 554 STTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG 613
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ ++S++++W NK +AD+ W
Sbjct: 614 NYKVNQKSIKIAWA---LNKGIKADFKQYW 640
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 124 (48.7 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 115 (45.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 251 MNGKEISGK 259
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANREN 103
E S++ IFVG L V DE L Q FS +G ++ ++ G+ G GFV F +R +
Sbjct: 170 EDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSD 229
Query: 104 AEEALHKLNGTVIGKQSVRLSW 125
AE+AL ++G +G +++R +W
Sbjct: 230 AEKALSSMDGEWLGSRAIRCNW 251
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-P----VGKGCGFVQFANRENAEE 106
+ + ++VGGLD VT++ LRQ F G + +VKI P G GFV++ + A+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 107 ALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQW 142
A+ LNG + + +R++W A + D N +
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHF 176
Score = 122 (48.0 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TT +VG L P T D+ F +G + + +G F++ + ENA +A+ LNG
Sbjct: 302 TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYN 361
Query: 116 IGKQSVRLSWGR--NPANKQFRADYGNQWS 143
+ + ++ SWG+ N N Q D +S
Sbjct: 362 VNGRPLKCSWGKDKNSTNPQGNFDPSQAFS 391
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQ 133
V A+R AE A N + G K +V L++ G P + Q
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQ 119
>RGD|1311210 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C. elegans)
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 RGD:1311210 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS IPI:IPI00949707
ProteinModelPortal:D4A2J5 Ensembl:ENSRNOT00000065101
UCSC:RGD:1311210 ArrayExpress:D4A2J5 Uniprot:D4A2J5
Length = 367
Score = 132 (51.5 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 90 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 149
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 150 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKAVNPYTNGW 201
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 124 (48.7 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 118 (46.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ FS+YG+ SVK+ P GK G GFV F E+A +A+ +
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NG I + V + + +Q
Sbjct: 251 MNGKDINGKMVFVGRAQKKVERQ 273
Score = 109 (43.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F ++ A+ A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 124 (48.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 251 MNGKEISGK 259
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 124 (48.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 116 (45.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 251 MNGKEISGK 259
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 124 (48.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 115 (45.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NG + +S+ + + +Q
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQ 273
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A +A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 124 (48.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 357 RIVGSKPLYVALAQRKEER--KAHLTNQY 383
Score = 114 (45.2 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ ++ D+ L++ F +YG+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NGT + ++V + + +Q
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQ 274
Score = 109 (43.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F ++ A+ A+ K+NG
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 161
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 162 MLLNDRKVFV--GRFKSRKEREAEMG 185
Score = 34 (17.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 158 KMNGMLLNDRKVFVGRFKSRK 178
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 124 (48.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 115 (45.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 251 MNGKEISGK 259
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 124 (48.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 117 (46.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 251 MNGKEITGK 259
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 123 (48.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RILGTKPLYVALAQRKEER--KAILTNQY 382
Score = 104 (41.7 bits), Expect = 0.00096, P = 0.00095
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVGK----GCGFVQFANRENAEEALHK 110
+++VG L P+VT+ L + FS G I S+++ V G ++ F +AE AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 111 LNGTVIGKQSVRLSWG-RNPANKQFRADYGN 140
+N VI Q +R+ W R+P + ++ GN
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLR--KSGVGN 100
Score = 35 (17.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 EMNGVYCSSRPMRIGAATPR 22
+MNG S R + +G A R
Sbjct: 250 DMNGKEVSGRLLYVGRAQKR 269
Score = 34 (17.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRK 23
+T MNG+ + R + +G R+
Sbjct: 155 ITTMNGMLLNDRKVFVGHFKSRR 177
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 130 (50.8 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 38 ASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI 87
AS G G +SEG D+S +F+GGL + T +DL+ FS++GE+ ++K+
Sbjct: 19 ASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 78
Query: 88 -PV---GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
P+ +G GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 79 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 133
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 124 (48.7 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 356 RIVGSKPLYVALAQRKEER--KAHLTNQY 382
Score = 115 (45.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NG + +S+ + + +Q
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQ 273
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A +A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 34 (17.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F1Q2X1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 EMBL:AAEX03004562 EMBL:AAEX03004563 EMBL:AAEX03004564
GeneID:609116 KEGG:cfa:609116 RefSeq:XP_863775.1
Ensembl:ENSCAFT00000030298 Uniprot:F1Q2X1
Length = 395
Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 177
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 178 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 229
>MGI|MGI:1926224 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
Length = 396
Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 97 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 156
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 157 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 208
>UNIPROTKB|Q9NWB1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0050658 "RNA transport" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005802 GO:GO:0043484
GO:GO:0050658 eggNOG:NOG258617 KO:K14946 CTD:54715
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ
EMBL:AF107203 EMBL:AF229057 EMBL:AF094849 EMBL:AF109106
EMBL:AF109120 EMBL:AF109107 EMBL:AF109108 EMBL:AF109109
EMBL:AF109110 EMBL:AF109111 EMBL:AF109112 EMBL:AF109113
EMBL:AF109114 EMBL:AF109115 EMBL:AF109116 EMBL:AF109117
EMBL:AF109118 EMBL:AF109119 EMBL:AF448859 EMBL:AK001027
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 EMBL:BC113691 IPI:IPI00152050
IPI:IPI00170678 IPI:IPI00170712 IPI:IPI01021020 IPI:IPI01022902
RefSeq:NP_001135805.1 RefSeq:NP_001135806.1 RefSeq:NP_061193.2
RefSeq:NP_665898.1 RefSeq:NP_665899.1 RefSeq:NP_665900.1
UniGene:Hs.459842 PDB:2ERR PDBsum:2ERR ProteinModelPortal:Q9NWB1
SMR:Q9NWB1 IntAct:Q9NWB1 MINT:MINT-2854938 STRING:Q9NWB1
PhosphoSite:Q9NWB1 DMDM:166897979 PaxDb:Q9NWB1 PRIDE:Q9NWB1
Ensembl:ENST00000311745 Ensembl:ENST00000355637
Ensembl:ENST00000436368 Ensembl:ENST00000547338
Ensembl:ENST00000550418 Ensembl:ENST00000553186 GeneID:54715
KEGG:hsa:54715 UCSC:uc002cys.2 UCSC:uc002cyt.2 UCSC:uc002cyw.2
UCSC:uc002cyx.2 UCSC:uc002cyy.2 GeneCards:GC16P006033
HGNC:HGNC:18222 HPA:HPA040809 MIM:605104 neXtProt:NX_Q9NWB1
ChiTaRS:RBFOX1 EvolutionaryTrace:Q9NWB1 GenomeRNAi:54715
NextBio:57277 ArrayExpress:Q9NWB1 Bgee:Q9NWB1 Genevestigator:Q9NWB1
GermOnline:ENSG00000078328 Uniprot:Q9NWB1
Length = 397
Score = 132 (51.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 209
>UNIPROTKB|J3KNW3 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 ProteinModelPortal:J3KNW3 Ensembl:ENST00000340209
Uniprot:J3KNW3
Length = 402
Score = 132 (51.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 103 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 162
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 163 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 214
>UNIPROTKB|F1Q2W1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 OMA:PPDTMAQ EMBL:AAEX03004562 EMBL:AAEX03004563
EMBL:AAEX03004564 RefSeq:XP_851461.1 ProteinModelPortal:F1Q2W1
Ensembl:ENSCAFT00000030301 GeneID:609116 KEGG:cfa:609116
Uniprot:F1Q2W1
Length = 418
Score = 132 (51.5 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 177
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 178 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 229
>UNIPROTKB|B7Z1U7 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC005774 EMBL:AC006075
EMBL:AC006112 EMBL:AC007012 EMBL:AC007217 EMBL:AC007222
EMBL:AC007223 EMBL:AC009135 EMBL:AC022206 EMBL:AC023829
EMBL:AC027683 EMBL:AC079410 EMBL:AC125796 EMBL:AC131390
UniGene:Hs.459842 HGNC:HGNC:18222 ChiTaRS:RBFOX1 EMBL:AK293951
IPI:IPI00910807 SMR:B7Z1U7 STRING:B7Z1U7 Ensembl:ENST00000422070
UCSC:uc010uxz.1 Uniprot:B7Z1U7
Length = 425
Score = 132 (51.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 141 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 200
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 201 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 252
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 124 (48.7 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 395
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 396 RIVGSKPLYVALAQRKEER--KAHLTNQY 422
Score = 116 (45.9 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 111 LNGTVI-GK 118
+NG I GK
Sbjct: 291 MNGKEISGK 299
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 200
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 201 MLLNDRKVFV--GRFKSRKEREAELG 224
Score = 34 (17.0 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 197 KMNGMLLNDRKVFVGRFKSRK 217
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 133 (51.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 51 GDSSNT-----TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFA 99
G+ +NT IFVG L P V DE LR FS++ + + +G GFV F
Sbjct: 163 GNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFG 222
Query: 100 NRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGNQ 141
N+ +AE AL +NG + +++R +W + +Q + Y NQ
Sbjct: 223 NQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQ-QQHYNNQ 263
>FB|FBgn0034598 [details] [associations]
symbol:CG4266 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K13191 GeneTree:ENSGT00530000063946 RefSeq:NP_001097394.1
UniGene:Dm.4151 ProteinModelPortal:A8DYK5 SMR:A8DYK5 STRING:A8DYK5
EnsemblMetazoa:FBtr0113100 GeneID:37411 KEGG:dme:Dmel_CG4266
UCSC:CG4266-RB FlyBase:FBgn0034598 OMA:RAITISW OrthoDB:EOG4NK99F
PhylomeDB:A8DYK5 GenomeRNAi:37411 NextBio:803495 Bgee:A8DYK5
Uniprot:A8DYK5
Length = 1306
Score = 130 (50.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
+TT++VG L V E+L F +YG+I S+ V +GC F+ R++A +A+ L
Sbjct: 491 STTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNH 550
Query: 115 VIGKQSVRLSW--GRNPANKQFRADY 138
+ +++ +SW G+ +K+++ DY
Sbjct: 551 KLQGRAITISWAAGKGVKSKEWK-DY 575
Score = 34 (17.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 41 GAPGQGPQSEGDSSNTTIFVG 61
G G GP S G S I G
Sbjct: 156 GGVGPGPSSSGALSLADISSG 176
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 125 (49.1 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 114 TVIGKQSVRLSWGR 127
++G + + ++ G+
Sbjct: 200 RIVGSKPLHVTLGQ 213
Score = 99 (39.9 bits), Expect = 0.00089, P = 0.00089
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +FV + ++ DE L++ F +YG SVK+ GK G GFV++ E A++A+
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 94
Query: 111 LNGTVI-GK 118
L+G I GK
Sbjct: 95 LHGKSIDGK 103
>UNIPROTKB|F8VZG9 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 IPI:IPI01022127 ProteinModelPortal:F8VZG9 SMR:F8VZG9
Ensembl:ENST00000547372 ArrayExpress:F8VZG9 Bgee:F8VZG9
Uniprot:F8VZG9
Length = 466
Score = 132 (51.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 39/112 (34%), Positives = 55/112 (49%)
Query: 39 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 141 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 200
Query: 93 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
GFV F N +A+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 201 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 252
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 134 (52.2 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 107
S +++ LD +V DE L++ FS+YG + S K+ P G +G GFV ++N E A A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 108 LHKLNGTVIGKQSVRLSWGRNPANKQ 133
L ++NG +IG++ + ++ + +++
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEA 107
S IF+ LD ++ ++ L + FS +G I S K+ + KG GFVQF E+A+ A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 108 LHKLNGTVIGKQSV 121
+ KLNG ++ + V
Sbjct: 193 IDKLNGMLMNDKQV 206
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 131 (51.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 33/79 (41%), Positives = 42/79 (53%)
Query: 49 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 100
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 101 RENAEEALHKLNGTVIGKQ 119
+ + LHK + GKQ
Sbjct: 161 EDAVDSVLHKTFHDLSGKQ 179
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 13 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 72
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 73 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 118
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTD 69
AAT AS G G +SEG D+S +F+GGL + T
Sbjct: 32 AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTK 91
Query: 70 EDLRQPFSQYGEIA--SVKI-PV---GKGCGFVQFANRENAEEAL----HKLNGTVI 116
+DL+ FS++GE+ ++K+ P+ +G GFV F E+ ++ + HKLNG VI
Sbjct: 92 KDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 148
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 130 (50.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 37/140 (26%), Positives = 60/140 (42%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFVGG 62
EM G +C R + + + K G P Q D +NT ++V
Sbjct: 144 EMQGAFCLKRSILVHSVKSDKNTYLSSPGFY-------GTP-QPLNQFTDPNNTAVYVHQ 195
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122
L N+T ++LR F +GEI + V G + FA R AE+A++++N + ++
Sbjct: 196 LPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEMNNFPLHGVRIQ 253
Query: 123 LSWGRNPANKQFRADYGNQW 142
LSW R P+ + W
Sbjct: 254 LSWARPPSMALLPSKQSTYW 273
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 131 (51.2 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 34/97 (35%), Positives = 50/97 (51%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 93
N A G Q E SS+ IFVG L P VTD L FS Y + ++ G+ G
Sbjct: 124 NWAYASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGF 182
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130
GFV F N+++A+ A+ ++ G +G + +R +W A
Sbjct: 183 GFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGA 219
Score = 115 (45.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANR 101
G+ P E ++ TT++VG L P V+ DL + F G I V++ KG GFV+++
Sbjct: 250 GEAP--ENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307
Query: 102 ENAEEALHKLNG-TVIGKQSVRLSWGRNP 129
A A+ N + + + ++ SWG P
Sbjct: 308 VEAALAIQMGNTHSYLSGRQMKCSWGSKP 336
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 114 (45.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL+P T+E +R+ F Q+GEI ++++P+ +G F+ F + ++ L K
Sbjct: 160 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKK 219
Query: 112 NGTVIGKQ 119
TV G +
Sbjct: 220 FHTVSGSK 227
Score = 110 (43.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/106 (29%), Positives = 55/106 (51%)
Query: 40 NGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
NGA G Q S+ + +FVGGL + + +DL+ F+++GE+ I + +G
Sbjct: 57 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 116
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GF+ F + + E+ L H+L+G VI + ++ ++P K F
Sbjct: 117 FGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKA-MAMKKDPVKKIF 161
Score = 34 (17.0 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 42 APGQGPQSE-GDSSNTTIFVGG 62
+PG GP + G TT G
Sbjct: 33 SPGSGPATPAGSGGGTTAAPSG 54
>UNIPROTKB|F1LPT8 [details] [associations]
symbol:Rbm16 "Protein Rbm16" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211007
Ensembl:ENSRNOT00000065733 ArrayExpress:F1LPT8 Uniprot:F1LPT8
Length = 1267
Score = 137 (53.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R+++ AL KL+ G
Sbjct: 475 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 534
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 535 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 561
>MGI|MGI:1925212 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1925212 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006366 GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG306894 CTD:22828
HOVERGEN:HBG055796 KO:K13191 OrthoDB:EOG45MN4V ChiTaRS:SCAF8
EMBL:AK122451 EMBL:BC038363 EMBL:BC075621 EMBL:AK032418
EMBL:AK161113 IPI:IPI00938443 RefSeq:NP_598884.2 UniGene:Mm.124373
UniGene:Mm.486401 ProteinModelPortal:Q6DID3 SMR:Q6DID3
PhosphoSite:Q6DID3 PaxDb:Q6DID3 PRIDE:Q6DID3
Ensembl:ENSMUST00000076734 GeneID:106583 KEGG:mmu:106583
UCSC:uc008aei.2 GeneTree:ENSGT00530000063946 InParanoid:Q6DID3
OMA:YRFPPIE NextBio:358280 Bgee:Q6DID3 Genevestigator:Q6DID3
Uniprot:Q6DID3
Length = 1268
Score = 137 (53.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R+++ AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 535
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 536 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 562
>RGD|708362 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IMP] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:708362 GO:GO:0019904 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006366
GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 CTD:22828 HOVERGEN:HBG055796
KO:K13191 OrthoDB:EOG45MN4V EMBL:U49055 IPI:IPI00211007 PIR:T31420
RefSeq:NP_620794.1 UniGene:Rn.10529 ProteinModelPortal:Q63623
SMR:Q63623 PhosphoSite:Q63623 GeneID:245926 KEGG:rno:245926
UCSC:RGD:708362 HOGENOM:HOG000154078 InParanoid:Q63623
NextBio:623189 ArrayExpress:Q63623 Genevestigator:Q63623
Uniprot:Q63623
Length = 1268
Score = 137 (53.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/90 (31%), Positives = 53/90 (58%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R+++ AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSG 535
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ IG + ++++W NK + +Y W
Sbjct: 536 SYKIGSKVIKIAWA---LNKGVKTEYKQFW 562
>UNIPROTKB|F1P0Y4 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AADN02010755 IPI:IPI00596341
Ensembl:ENSGALT00000025555 ArrayExpress:F1P0Y4 Uniprot:F1P0Y4
Length = 1092
Score = 136 (52.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG LD T +D+ ++G I S+ + +GC ++ +R++A AL KL+ G
Sbjct: 495 STTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG 554
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ ++S++++W NK + DY W
Sbjct: 555 NFKVNQKSIKIAWA---LNKGIKPDYKQYW 581
>UNIPROTKB|F1P0Y5 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AADN02010755
IPI:IPI00681248 Ensembl:ENSGALT00000025554 ArrayExpress:F1P0Y5
Uniprot:F1P0Y5
Length = 1092
Score = 136 (52.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 113
+TT++VG LD T +D+ ++G I S+ + +GC ++ +R++A AL KL+ G
Sbjct: 495 STTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG 554
Query: 114 TV-IGKQSVRLSWGRNPANKQFRADYGNQW 142
+ ++S++++W NK + DY W
Sbjct: 555 NFKVNQKSIKIAWA---LNKGIKPDYKQYW 581
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 113 GTVIGKQSV 121
G ++ + V
Sbjct: 186 GMLLNDKQV 194
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 107
SSN ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA
Sbjct: 317 SSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 108 LHKLNGTVIGKQSVRLSWGRNPANKQFR 135
+ +L+G +I + + ++ + +++ R
Sbjct: 375 MSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 38 ASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGK-- 91
A AP G + NT+++VG LD NVTD L F Q G + +V++ V +
Sbjct: 17 AVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRS 76
Query: 92 -GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQFRADYGN 140
G G+V F N ++A A+ +LN + + +R+ + R+P+ + R+ GN
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR--RSGAGN 125
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG----KGCGFVQFANRENAEEALHK 110
T ++V L + TD+DL+ F +YG+I S V + G KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 111 LNG 113
LNG
Sbjct: 275 LNG 277
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 128 (50.1 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
IFVGGL P VTD DL + FS++G+I +I + +G GF+ FA+R +E++ ++
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 112 NGTVIGKQSVRLS 124
+G G + + ++
Sbjct: 69 HGRDFGDRVISVN 81
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQ 133
V A+R AE A N + G K +V L++ G P + Q
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQ 119
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQ 133
V A+R AE A N + G K +V L++ G P + Q
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQ 119
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 112 NGTVIGKQSVRLSWGRNPANKQ 133
NG IG+ V+L + K+
Sbjct: 118 NGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
+++G L NV ++D+++ FS YG + ++I + G GFV+F + +A++A+++LNG +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRL--LEIDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 118 KQSVRLSWGRNPANKQFRADYGNQ 141
+ V + R P + YG++
Sbjct: 62 GERVIVEHARGPRRDRDGYSYGSR 85
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 112 NGTVIGKQSVRLSWGRNPANKQ 133
NG IG+ V+L + K+
Sbjct: 118 NGKYIGQHPVQLKRAESSVPKK 139
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 113 (44.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 26/89 (29%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD ++ DE LR+ F+ YG I S K+ +G GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + + +A NQ+
Sbjct: 356 RIVSTKPLYVALAQRKEER--KAILTNQY 382
Score = 104 (41.7 bits), Expect = 0.00091, P = 0.00091
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ +D ++ ++ L FS +G I S K+ KG GFV F +E A A+ +NG
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + G + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GHFKSRKEREAEMG 184
Score = 42 (19.8 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+TEMNG + R + +G A R
Sbjct: 248 VTEMNGKELNGRVLYVGRAQKR 269
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 114 (45.2 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + + +A NQ+
Sbjct: 356 RIVSTKPLYVALAQRKEER--KAILTNQY 382
Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+F+ LD ++ ++ L FS +G+I S K+ +G GFV F +E A A+ +NG
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + G + ++ +YG
Sbjct: 161 MLLNDRKVFV--GHFKSRRERELEYG 184
Score = 41 (19.5 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MTEMNGVYCSSRPMRIGAATPR 22
+TEMNG + R + +G A R
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKR 269
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 134 (52.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 50 EGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV-GKGC--GFVQFANREN 103
E D +N T+F+G LD VT+ DLR+ F ++G I V I P G+ GF++F N +
Sbjct: 302 EDDQRANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDM 361
Query: 104 AEEALHKLNGTVIGKQSVRLSWGR-NPANKQFRADYGNQW 142
A A ++G V+G+ +++ +G+ P + + G W
Sbjct: 362 AHRAKISMSGKVVGRNPIKIGYGKATPTTRLWVGGLG-PW 400
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRE 102
P + P + S ++V L +V+++ L++ F QYG++ VK + K F+ F +R+
Sbjct: 327 PQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVK-KI-KDYAFIHFEDRD 384
Query: 103 NAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133
+A EA+ LNG IG ++ +S + P++K+
Sbjct: 385 SAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 129 (50.5 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A++++NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 114 TVIGKQSVRLSWGR 127
V+G +++ ++ G+
Sbjct: 364 RVVGSKTLHVTLGQ 377
Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 110
T +FV ++ DE L++ FS+YG SVK+ GK G GFV++ E A++A+ +
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLE 258
Query: 111 LNGTVI-GK 118
L+G I GK
Sbjct: 259 LHGKSIDGK 267
Score = 104 (41.7 bits), Expect = 0.00046, P = 0.00046
Identities = 33/107 (30%), Positives = 53/107 (49%)
Query: 44 GQG-PQSEGDSSN---TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK---GC 93
G G P + G ++VG LDP+VT++ L + F G + +I PV + G
Sbjct: 2 GSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGY 61
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGN 140
G+V F +AE AL+ +N +I + RL W + P + ++ GN
Sbjct: 62 GYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQ-PDDHLRKSGVGN 107
>ZFIN|ZDB-GENE-050506-42 [details] [associations]
symbol:scaf4b "SR-related CTD-associated factor 4b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050506-42 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 HOVERGEN:HBG055644 EMBL:BC065329 IPI:IPI00619155
UniGene:Dr.81696 ProteinModelPortal:Q6P118 Uniprot:Q6P118
Length = 745
Score = 133 (51.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 24/89 (26%), Positives = 53/89 (59%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TT+++G LD +D+ ++G+I S+ + +GC +V +R++A+ AL+KL+ T
Sbjct: 498 TTLWIGQLDKKTQRQDITSLMEEFGQIESINMIPPRGCAYVAMVHRQDAQTALNKLSKTS 557
Query: 116 I--GKQSVRLSWGRNPANKQFRADYGNQW 142
+ +++++++W N K +++Y W
Sbjct: 558 VKVNQKTIKIAWAMN---KGIKSEYKKFW 583
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 38 ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GK 91
AS G ++G+ IFVGG+ P V +EDL F+QYGE+A ++ +
Sbjct: 12 ASETIKENGHSTKGNEDKK-IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSR 70
Query: 92 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133
G FV+F E + AL T+ GK SV + ++ NK+
Sbjct: 71 GFAFVEFTTGEGCKLALAAREQTIKGK-SVEVKPAKSRENKK 111
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/107 (30%), Positives = 57/107 (53%)
Query: 46 GPQSEGDSS---NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGF--V 96
G Q E D + +TT+++G + T+E L + FS+ GEI + + + K CGF V
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLS--WGRNPANKQFRADYGNQ 141
F +RE+ E+A+ ++GT++ + +R+ WG + R G Q
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQ 127
Score = 118 (46.6 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGF--VQFANRENAEEA 107
++TT+++G + T+E L + FS+ GEI + + + K CGF V F +RE+ E+A
Sbjct: 32 ASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
Query: 108 LHKLNGTVIGKQSVRLS----------WGRNPANKQFRADY 138
+ ++GT++ + +R+ WGR + Q R +Y
Sbjct: 92 VKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEY 132
>UNIPROTKB|H0YKS1 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC066612 EMBL:AC090526 HGNC:HGNC:17940
Ensembl:ENST00000560172 Uniprot:H0YKS1
Length = 126
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI--ASVKIPVGK--GCGF 95
+G G G + S IFV L ++T + L++ FSQ G + A +K+ GK GCG
Sbjct: 33 SGPMGSGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGT 92
Query: 96 VQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128
V+F + E+AE+A +NG I + + + RN
Sbjct: 93 VRFDSPESAEKACRIMNGIKISGREIDVRLDRN 125
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 42 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 95
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 96 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQ 133
V A+R AE A N + G K +V L++ G P + Q
Sbjct: 80 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQ 119
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQ 97
G P D T+F+G L N + + + F+++GE+ SV+IP KG G+VQ
Sbjct: 259 GDTPSEPSD----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 314
Query: 98 FANRENAEEALHKLNGTVIGKQSVRLSWGR-NPAN 131
F+N E+A++AL L G I + VRL + P N
Sbjct: 315 FSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 349
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 96
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 97 MLLNDRKVFV--GRFKSRKEREAELG 120
Score = 119 (46.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 291
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 292 RIVATKPLYVALAQRKEERQ--AHLTNQY 318
Score = 103 (41.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 111 LNGTVI-GKQ 119
+NG + GKQ
Sbjct: 187 MNGKELNGKQ 196
Score = 34 (17.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 93 KMNGMLLNDRKVFVGRFKSRK 113
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 39 SNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----K 91
++G Q SE S +T + V + D DLRQ F Q+G+I V+I K
Sbjct: 114 TDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 173
Query: 92 GCGFVQFANRENAEEALHKLNGTVI 116
G GFV F N +A+ A KL+GTV+
Sbjct: 174 GFGFVTFENSADADRAREKLHGTVV 198
>UNIPROTKB|Q9U1N0 [details] [associations]
symbol:HRP65 "Hrp65 protein" species:7153 "Chironomus
tentans" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005856
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
EMBL:AJ243013 EMBL:AJ404654 ProteinModelPortal:Q9U1N0
InterPro:IPR012975 Pfam:PF08075 Uniprot:Q9U1N0
Length = 535
Score = 118 (46.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112
S +++G L +VT+E+L++ FS YGEI+ I K F++ R NAE A L+
Sbjct: 110 SGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLD 169
Query: 113 GTVIGKQSVRLSWGRN 128
G + + +R+ + N
Sbjct: 170 GRMRKNKPIRIRFAPN 185
Score = 34 (17.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 41 GAPGQGPQSEGDSSNTTIFV 60
G PG GP+ G N V
Sbjct: 68 GGPGMGPR--GPMKNEDFIV 85
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 115
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 116 MLLNDRKVFV--GRFKSRKEREAELG 139
Score = 119 (46.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 310
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 311 RIVATKPLYVALAQRKEERQ--AHLTNQY 337
Score = 34 (17.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 112 KMNGMLLNDRKVFVGRFKSRK 132
>ZFIN|ZDB-GENE-040718-69 [details] [associations]
symbol:nelfe "negative elongation factor complex
member E" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040718-69 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089917
EMBL:FP102194 IPI:IPI00934333 Ensembl:ENSDART00000113250
ArrayExpress:F1QK79 Bgee:F1QK79 Uniprot:F1QK79
Length = 378
Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 106
P+ G T++V G + ++ LR F+Q+G I + + + C FV F E+A++
Sbjct: 259 PERRGVRKGNTVYVYGT--GLVEDSLRTAFAQHGNIIDLSMDSPRNCAFVTFEKIESADQ 316
Query: 107 ALHKLNGTVIGKQSVRLSWGR 127
A+ +LNGT +G ++++S R
Sbjct: 317 AVAELNGTTVGDVNIKVSIAR 337
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 124 (48.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/89 (30%), Positives = 51/89 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++G + + ++ + + +A NQ+
Sbjct: 83 RIVGSKPLYVALAQRKEER--KAHLTNQY 109
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 119 (46.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 323
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 324 RIVATKPLYVALAQRKEERQ--AHLTNQY 350
Score = 34 (17.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 125 KMNGMLLNDRKVFVGRFKSRK 145
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/106 (32%), Positives = 56/106 (52%)
Query: 48 QSEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQY-----GEIA-SVKIPVGKGCGFVQFA 99
QS+ SS+ T +FVG L+ NV DE LR F + G + ++ +G GFV F
Sbjct: 152 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 211
Query: 100 NRENAEEALHKLNGTVIGKQSVRLSWG-----RNPANKQFRADYGN 140
++++A+ A+ + G + + +R++W N N Q R +YGN
Sbjct: 212 SQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYGN 257
Score = 113 (44.8 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
++S+ ++VG LD +T++ L+Q F G IA++KI + K FV++ +A
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANI 130
Query: 107 ALHKLNGTVIGKQSVRLSW 125
AL LNG I V+++W
Sbjct: 131 ALQTLNGKQIENNIVKINW 149
>UNIPROTKB|F1PJX5 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
Length = 279
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 69 DEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVR 122
D DLRQ F Q+G+I V+I KG GFV F +A+ A KLNGT++ G++ V
Sbjct: 38 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVN 97
Query: 123 LSWGRNPANKQFRADYGNQW 142
+ R NK+ Y N W
Sbjct: 98 NATARVMTNKKTANPYSNGW 117
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 97
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 21 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 79
Query: 98 FANRENAEEALH---KLN 112
F +E+A++ L KLN
Sbjct: 80 FETQEDAQKILQEAEKLN 97
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
Score = 98 (39.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 111
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Query: 112 NGTV-IGKQSVRLSWGRNPANKQ 133
V + K ++++ + +Q
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQ 266
Score = 36 (17.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 18 AATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEG 51
AAT AS G G +SEG
Sbjct: 32 AATQGAAAAAGSGAGTGGGTASGGTEGGSAESEG 65
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/90 (32%), Positives = 51/90 (56%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 105
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 106 EALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
+A++ LNG + +++++S+ R P++ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIR 123
Score = 114 (45.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 103 NAEEALHKLNG 113
AEEA+ LNG
Sbjct: 178 EAEEAIKGLNG 188
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S +F+GGL+ + +E L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 107 ALHKLNGTVIGKQSVRLSW-GRNPANKQ 133
A+ +NG + + +R+ G++ +++
Sbjct: 62 AMMAMNGKAVDGRQIRVDQAGKSSGDRR 89
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 103 (41.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQ 119
+NG + GKQ
Sbjct: 251 MNGKELNGKQ 260
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 103 (41.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 111 LNGTVI-GKQ 119
+NG + GKQ
Sbjct: 251 MNGKELNGKQ 260
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/139 (23%), Positives = 57/139 (41%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEGDSSNTTIFVGG 62
+ NG RP+R+ A P S+G+ G G S ++VG
Sbjct: 151 QFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 63 LDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVI 116
L V D L FS+ G++ ++ KG GFV + + + + A+ L+G +
Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270
Query: 117 GKQSVRLSWGR-NPANKQF 134
+ +R+S P +Q+
Sbjct: 271 DGRQIRVSEAEARPPRRQY 289
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 39 SNGAPGQGPQS-EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 91
SNG + GD T + V L N+T ++LR FS GE+ S K+ K
Sbjct: 2 SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 92 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132
G GFV + ++AE A++ LNG + +++++S+ R P+++
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSE 101
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 43 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 97
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 33 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 91
Query: 98 FANRENAEEALH---KLN 112
F +E+A++ L KLN
Sbjct: 92 FETQEDAQKILQEAEKLN 109
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 119 (46.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 34 (17.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
I++ LD + DE L++ FS +G I+ K+ V GKG G + F++ E A +A+ ++NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNG 363
Query: 114 TVIGKQSVRLSWGR 127
++G + ++++ G+
Sbjct: 364 RIVGSKPLQVTLGQ 377
Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK---GCGFVQFANRENAEEALHKL 111
++VG LDP+VT++ L + F G + +I PV + G G+V F +AE AL+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 112 NGTVIGKQSVRLSWGRNPANKQFRADYGN 140
N +I + RL W + P ++ ++ GN
Sbjct: 80 NFDLINGKPFRLMWSQ-PDDRLRKSGIGN 107
>UNIPROTKB|F1NBH4 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 GeneTree:ENSGT00390000013767
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ EMBL:AADN02023354
EMBL:AADN02023355 EMBL:AADN02023356 EMBL:AADN02023357
EMBL:AADN02023358 EMBL:AADN02023359 EMBL:AADN02023360
EMBL:AADN02023361 EMBL:AADN02023362 EMBL:AADN02023363
EMBL:AADN02023364 EMBL:AADN02023365 EMBL:AADN02023366
EMBL:AADN02023367 EMBL:AADN02023368 EMBL:AADN02023369
EMBL:AADN02023370 EMBL:AADN02023371 EMBL:AADN02023372
EMBL:AADN02023373 EMBL:AADN02023374 EMBL:AADN02023375
EMBL:AADN02023376 EMBL:AADN02023377 EMBL:AADN02023378
EMBL:AADN02023379 EMBL:AADN02023380 EMBL:AADN02023381
EMBL:AADN02023382 EMBL:AADN02023383 IPI:IPI00600787
Ensembl:ENSGALT00000011913 Uniprot:F1NBH4
Length = 399
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 36/100 (36%), Positives = 50/100 (50%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENA 104
+E S + V + D DLRQ F Q+G+I V+I KG GFV F N +A
Sbjct: 112 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 171
Query: 105 EEALHKLNGTVI-GKQ-SVRLSWGRNPANKQFRADYGNQW 142
+ A KL+GTV+ G++ V + R NK+ Y N W
Sbjct: 172 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGW 211
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 23 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 82
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 83 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 128
Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 123 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 182
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 183 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 218
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
I++G L V+++D+ F YG+I V + G GFV+F ++ +AE+A+H LNG +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKELG 62
Query: 118 KQSVRLSWGRNPANKQFRADYG 139
+ V L + + R +G
Sbjct: 63 GERVILDYSKPRGGGGDRGGFG 84
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117
I++G L V+++D+ F YG+I V + G GFV+F ++ +AE+A+H LNG +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK--NGFGFVEFDDKRDAEDAVHDLNGKELG 62
Query: 118 KQSVRLSWGRNPANKQFRADYG 139
+ V L + + R +G
Sbjct: 63 GERVILDYSKPRGGGGDRGGFG 84
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 39 SNGAPGQGPQS-EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 91
SNG + GD T + V L N+T ++LR FS GE+ S K+ K
Sbjct: 29 SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 88
Query: 92 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132
G GFV + ++AE A++ LNG + +++++S+ R P+++
Sbjct: 89 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSE 128
>UNIPROTKB|J9PAH3 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
Uniprot:J9PAH3
Length = 314
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 69 DEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVR 122
D DLRQ F Q+G+I V+I KG GFV F +A+ A KLNGT++ G++ V
Sbjct: 53 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVN 112
Query: 123 LSWGRNPANKQFRADYGNQW 142
+ R NK+ Y N W
Sbjct: 113 NATARVMTNKKTANPYSNGW 132
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 127 (49.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 67 SSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 126
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 127 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 172
Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 167 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRI 226
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 227 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQA 262
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 25 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 84
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 85 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 25 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 84
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 85 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEAL 108
NT++FV + + EDLR+ F +YG I V +P+ +G +VQF + +AE+AL
Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 109 HKLNGT-VIGKQ-SVRLSWGRNPANKQFRADYG-NQWS 143
H L+ + G+Q ++ + G Q +A G N +S
Sbjct: 69 HNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS 106
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 30 SSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 90 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 135
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 30 SSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 90 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 135
Score = 123 (48.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQA 225
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 18 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 77
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 78 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 123
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 18 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 77
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 78 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 123
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 25 SSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 84
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 85 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 25 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 84
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 85 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 130
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 41 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 100
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 101 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 146
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 141 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 200
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 201 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 236
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 29 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 88
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 89 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 134
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 129 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 188
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 189 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 224
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 30 SSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 90 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 135
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 38 ASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 91
+SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 30 SSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Query: 92 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFR 135
G GFV + + ++AE+A++ LNG + +++++S+ R P++ R
Sbjct: 90 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIR 135
Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 102
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 103 NAEEALHKLNGTVIG--KQSVRLSWGRNPANKQFRA 136
AEEA+ LNG + + + + NP+ K +A
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 37/145 (25%), Positives = 64/145 (44%)
Query: 3 EMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXASNGAPGQGPQSEG-DSSNTTIFVG 61
EMNG + + + +G A + Q PQ ++V
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVK 309
Query: 62 GLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIG 117
LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG ++
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 369
Query: 118 KQSVRLSWGRNPANKQFRADYGNQW 142
+ + ++ + +Q A NQ+
Sbjct: 370 TKPLYVALAQRKEERQ--AHLSNQY 392
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IFV LD ++ + L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
+ + V + GR + + +A+ G
Sbjct: 161 MFLNDRKVFV--GRFKSRRDRQAELG 184
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGKGCGF--VQFANRE 102
S+ S +++VG L P+VT+ L + FS G I S+++ + G+ V F E
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 103 NAEEALHKLNGTVIGKQSVRLSWG-RNPANKQFRADYGN 140
+AE AL +N VI + VR+ W R+P+ + ++ GN
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLR--KSGVGN 100
Score = 105 (42.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 110
T +++ L ++ DE L+ FS++G SVK+ KG GFV F E+A +A+ +
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 111 LNGTVI-GKQ 119
+NG + GKQ
Sbjct: 251 MNGKDLNGKQ 260
Score = 35 (17.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG++ + R + +G R+
Sbjct: 157 KMNGMFLNDRKVFVGRFKSRR 177
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 45 QGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQF 98
QG G+ ++V LD VTDE LR+ F+++G I S K+ P G KG GFV F
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAF 375
Query: 99 ANRENAEEALHKLNGTVIG 117
+ A L+++NG ++G
Sbjct: 376 SAASEASRVLNEMNGKMVG 394
Score = 124 (48.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 31/112 (27%), Positives = 60/112 (53%)
Query: 39 SNGAPGQGPQSEGDSSN----TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------P 88
++ PG G GD +++VG LD NVTD L F++ ++ SV++
Sbjct: 25 ASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATN 84
Query: 89 VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRADYGN 140
G G+V ++N ++AE+A+ KLN + + + +R+++ ++ + R+ GN
Sbjct: 85 TSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSAR-RSGVGN 135
Score = 111 (44.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
+FV LD +V ++ L + FS G I S K+ +G GFVQF ++A+ A+ KLN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 113 GTVIGKQSV 121
G V+ + +
Sbjct: 196 GKVLNDKQI 204
Score = 108 (43.1 bits), Expect = 0.00012, P = 0.00012
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 48 QSEGDSSN-TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVGKG---C-GFVQFANR 101
+S D T ++V L TD++L+ F QYG I+S V + G G C GFV F N
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENP 275
Query: 102 ENAEEALHKLNG 113
E+A A+ LNG
Sbjct: 276 EDAARAVEALNG 287
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 92
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 93 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANKQF 134
GFV F E+ ++ + HKLNG VI + + + P K F
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF 185
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQ 133
++ + + ++ + +Q
Sbjct: 356 RIVATKPLYVALAQRKEERQ 375
Score = 105 (42.0 bits), Expect = 0.00056, P = 0.00056
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IFV LD ++ ++ L S +G I S + KG GFV F E AE A+ K+NG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + G+ + K+ A+ G
Sbjct: 161 MLLNGRKVFV--GQFKSRKEREAELG 184
Score = 105 (42.0 bits), Expect = 0.00056, P = 0.00056
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGKGCG---FVQFANRENAEEALHK 110
+++VG L P+VT+ L + FS G I S++I + G +V F + ++AE AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 111 LNGTVIGKQSVRLSWG-RNPANKQFRADYGN 140
+N VI + VR+ W R+P+ + ++ GN
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLR--KSGVGN 100
Score = 34 (17.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNGRKVFVGQFKSRK 177
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 119 (46.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG-----FVQFANRENAEEALHK 110
TT++V G DL F +YG + IP + FV++ +R +A+EA H
Sbjct: 6 TTLYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAYHD 65
Query: 111 LNGTVIGKQSV-RLSWGRNPANKQFRADYG 139
++ +G+ + ++ W R P + +R + G
Sbjct: 66 MHNKRLGRDDILKIEWARTPPSASWRFESG 95
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
IF+ LD ++ ++ L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYG 139
++ + V + GR + K+ A+ G
Sbjct: 161 MLLNDRKVFV--GRFKSRKEREAELG 184
Score = 117 (46.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 27/89 (30%), Positives = 50/89 (56%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
++V LD + DE LR+ F+ +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 114 TVIGKQSVRLSWGRNPANKQFRADYGNQW 142
++ + + ++ + +Q A NQ+
Sbjct: 356 RIVATKPLYVALAQRKEERQ--AHLTNQY 382
Score = 104 (41.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GK--GCGFVQFANRENAEEALHK 110
T +++ ++ DE L++ F QYG SVK+ GK G GFV F E+A++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 111 LNGTVIGKQSVRLSWGRNPANKQ 133
+NG + +++ + + +Q
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQ 273
Score = 34 (17.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EMNGVYCSSRPMRIGAATPRK 23
+MNG+ + R + +G RK
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRK 177
WARNING: HSPs involving 773 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.131 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 189 150 0.00087 104 3 11 23 0.41 32
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1023
No. of states in DFA: 596 (63 KB)
Total size of DFA: 150 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.89u 0.09s 13.98t Elapsed: 00:00:01
Total cpu time: 13.92u 0.09s 14.01t Elapsed: 00:00:01
Start: Thu May 9 14:09:16 2013 End: Thu May 9 14:09:17 2013
WARNINGS ISSUED: 2