BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029716
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 265 bits (678), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 150/189 (79%), Gaps = 12/189 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY +GA +SEGD+ NTTIFV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPSGA---FTRSEGDTINTTIFV 310
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPFS++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 121 VRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV 180
VRLSWGRNPANKQ R YGNQW YYGGQ Y+GYGY +P P DP MY AA YP+
Sbjct: 371 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAP----YYPM 425
Query: 181 YGSHQQQVS 189
YG HQQQVS
Sbjct: 426 YGGHQQQVS 434
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 103 NAEEALHKLNGTVIGKQSVRL 123
+A+ ++NG +++R+
Sbjct: 253 ERTKAMTEMNGVKCSSRAMRI 273
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 95
G Q+ + N TI+VG L + + L F+ + EI S+K+ K G GF
Sbjct: 91 GNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 96 VQFANRENAEEALHKLNGTVI--GKQSVRLSW 125
V+F + + A++ L + NG + Q RL+W
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNW 182
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 262 bits (669), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/189 (71%), Positives = 147/189 (77%), Gaps = 12/189 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY NG + EGD NTTIFV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPNGTLTR---PEGDIMNTTIFV 308
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VTDEDL+QPF+++GEI SVKIPVGKGCGFVQF NR NAEEAL KLNGTVIGKQ+
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 121 VRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV 180
VRLSWGRNPANKQ R YGNQW YYGGQ Y+GYGY +P P DP MY AA YP+
Sbjct: 369 VRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAAP----YYPM 423
Query: 181 YGSHQQQVS 189
YG HQQQVS
Sbjct: 424 YGGHQQQVS 432
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 103 NAEEALHKLNGTVIGKQSVRL 123
+A+ ++NG +++R+
Sbjct: 251 ERTKAMTEMNGVKCSSRAMRI 271
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIP------VGKGCGF 95
G Q+ + N TI+VG L + + L F+ EI SVK+ + +G GF
Sbjct: 89 GNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGF 148
Query: 96 VQFANRENAEEALHKLNGTVI--GKQSVRLSW 125
V+F + + A++ L + NGT + Q RL+W
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNW 180
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 147/194 (75%), Gaps = 6/194 (3%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
MTEMNGVYCSSR MRIG ATP+K S ++Q YSSQ GGYASNGA G QS+GDSSN
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQ-YSSQAVILSGGYASNGAATHGSQSDGDSSN 294
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP GKGCGFVQF++R +A+EA+ KL+G +
Sbjct: 295 TTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAI 354
Query: 116 IGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAY 175
IGKQ+VRLSWGR+PANKQ R D G+QW+G Y G Q Y GYGY D MYA AA
Sbjct: 355 IGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYG 414
Query: 176 GAYPVYGSHQQQVS 189
+ YG+HQQ VS
Sbjct: 415 ASSNRYGNHQQPVS 428
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQFANRENAEEAL 108
N TI++G L + + L FSQ GE+ SVKI K GFV+F AE+ L
Sbjct: 83 NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVL 142
Query: 109 HKLNGTVI--GKQSVRLSWGRNPANKQFRADYGNQWS 143
NGT++ +Q RL+W ++ RA+ G+ +S
Sbjct: 143 QSYNGTMMPNTEQPFRLNWAGFSTGEK-RAETGSDFS 178
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENAEE 106
S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 107 ALHKLNGTVIGKQSVRL 123
A+ ++NG +++R+
Sbjct: 235 AMTEMNGVYCSSRAMRI 251
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 125/151 (82%), Gaps = 6/151 (3%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
+TEMNG YCS+R MR+G ATP+++ QQQ+SSQ GG+ SNG+ G G QS+G+S+N
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQFA+R++AE+A+ LNGTV
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 116 IGKQSVRLSWGRNPANKQFRADYGNQWSGAY 146
IGK +VRLSWGR+P NKQ+R D G QW+G Y
Sbjct: 381 IGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 107
+ ++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 108 LHKLNGTVIGKQSVRL 123
L ++NG + +R+
Sbjct: 261 LTEMNGAYCSNRQMRV 276
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T++VG L + + L FS GE++SVK+ K G GFV+F +R AEE L
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 111 LNGTVI--GKQSVRLSW 125
+G+V+ Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINW 185
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/168 (62%), Positives = 130/168 (77%), Gaps = 5/168 (2%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG +CSSR MR+G ATP++++ Y QQ SQ + G G G S+G+S+N+TIFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLD +VT+EDL QPFS +GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNT 391
Query: 121 VRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMY 168
VRLSWGR+P NKQ+R+D GNQW+G Y GQ Y+ GYA D +MY
Sbjct: 392 VRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNN-GYA---NQDSNMY 434
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T++VG L + + L FS E++SVK+ K G GFV+F +R AEEAL
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 111 LNGTVI--GKQSVRLSW 125
+G + +Q RL+W
Sbjct: 180 FSGVTMPNAEQPFRLNW 196
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 107
+ +IFVG L P+V+D L + F+ +Y + K+ + KG GFV+F + A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 108 LHKLNGTVIGKQSVRL 123
+ ++NG + +R+
Sbjct: 272 MTEMNGAFCSSRQMRV 287
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 113/186 (60%), Gaps = 14/186 (7%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K G Q+ + Q A+ G E D +NTTIFV
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQG--------ESDPNNTTIFV 286
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +AE+AL LNGT +G QS
Sbjct: 287 GGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 121 VRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAAAAAYGAYPV 180
+RLSWGR+P++KQ GAYYG PP DP+MY YG YP
Sbjct: 347 IRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY------YGNYPG 400
Query: 181 YGSHQQ 186
Y ++QQ
Sbjct: 401 YANYQQ 406
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENA 104
DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV+FA+
Sbjct: 172 DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQ 231
Query: 105 EEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGN 140
A+ ++NG + + +R+ + + P +A Y N
Sbjct: 232 LRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQN 269
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 28 QQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQQY + N +P P + ++++G L + + L F GE+ S K+
Sbjct: 61 QQQYGAMATTNPNPSPTGNP-----NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKV 115
Query: 88 PVGK------GCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWG 126
K G GF++F + AE L NGT++ +Q+ R++W
Sbjct: 116 IRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWA 162
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 123/198 (62%), Gaps = 12/198 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY-----ASNGAPGQG--PQSEGDS 53
M EMNG+YCS+RPMRI AATP+K+ G QQQY ++ Y ++ AP Q E D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 113
+ TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+ ++ G
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 114 TVIGKQSVRLSWGRNPANKQF--RADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYAAA 171
VIG+Q+VR+SW +NP + +AD NQW+G Y GQ YD Y Y DPS+YA
Sbjct: 295 QVIGQQAVRISWSKNPGQDGWVTQAD-PNQWNGYYGYGQGYDAYAYGA--TQDPSVYAYG 351
Query: 172 AAAYGAYPVYGSHQQQVS 189
Y YP G Q +S
Sbjct: 352 GYGYPQYPQQGEGTQDIS 369
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 23/130 (17%)
Query: 57 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 109
+IFVG L P+VTD L++ F Y + K+ KG GFV+FA A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 110 KLNGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIPPPNDPSMYA 169
++NG + +R+S N + Y + A+ P PS A
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTK----------------AVYPVTVPSAVA 220
Query: 170 AAAAAYGAYP 179
A AY A P
Sbjct: 221 APVQAYVAPP 230
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T+++G L V + L FSQ GE+ SVK+ K G GF++F + AE L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 111 LNGTVI--GKQSVRLSWG 126
NGT + + + RL+W
Sbjct: 85 YNGTQMPGTELTFRLNWA 102
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 112/175 (64%), Gaps = 26/175 (14%)
Query: 1 MTEMNGVYCSSRPMRIGAAT-----PRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSN 55
MTEMNG YCS+RPMRIG A P + + YQ ++QG A + D +N
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQ---NTQGANAG----------DNDPNN 259
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 115
TTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL LNGT
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 116 IGKQSVRLSWGRNPANKQFRADYGNQWS-GAYYG--GQVYDGYGYAI-PPPNDPS 166
+G QS+RLSWGR+P + +A QW+ G YYG Q GYGYA PP DP+
Sbjct: 320 LGGQSIRLSWGRSPNKQSDQA----QWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 37 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------ 89
+A GA + Q+EG + TIFVG L P VTD L F YG + K+ +
Sbjct: 137 WAQAGAGEKRFQTEG--PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 90 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123
KG GFV+FA+ A+ ++NG + +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 44 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 96
G G Q+ G +S+ ++++G L + + + F+Q GE S K+ K G GF+
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 97 QFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPA-NKQFRAD 137
+F + AE L NG + +Q+ RL+W + A K+F+ +
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTE 150
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 105/168 (62%), Gaps = 13/168 (7%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCSSRPMR G A +K Q Y + QG E D +NTTIFV
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQP-----ASYQNT----QGNSGESDPTNTTIFV 282
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
G +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR AE+AL LNGT +G QS
Sbjct: 283 GAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 121 VRLSWGRNPANKQFRADYG---NQWSGAYYGGQVYDGYGYAIPPPNDP 165
+RLSWGR+P+NKQ + D Y Q Y+ YGYA PPP DP
Sbjct: 343 IRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYA-PPPQDP 389
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFV 96
G G + + + T+FVG L P+VTD L + F + Y + K+ KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 97 QFANRENAEEALHKLNGTVIGKQSVR 122
+FA+ A+ ++NG + +R
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMR 246
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
++++G L P + + L F GE + K+ K G GF++F N AE L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 111 LNGTVI--GKQSVRLSWGRNPANKQFRAD 137
NG + +Q+ RL+W + A ++ +A+
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAE 169
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 103/163 (63%), Gaps = 17/163 (10%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRK-SSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIF 59
MTEMNGV CS+RPMRIG A +K +G + Y S G ++ D +NTT+F
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA---------GVTTDNDPNNTTVF 264
Query: 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ 119
VGGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AEEAL LNG +G
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGT 324
Query: 120 SVRLSWGRNPANKQFRADYGNQWSGAYYG--GQVYDGYGYAIP 160
+VRLSWGR+P+NKQ S YYG GQ + YGY +P
Sbjct: 325 TVRLSWGRSPSNKQ-----SGDPSQFYYGGYGQGQEQYGYTMP 362
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPVG------KGCGFVQFANRENA 104
DS + TIFVG L +VTD L + F + Y + K+ + KG GFV+F++
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 105 EEALHKLNGTVIGKQSVRL 123
A+ ++NG + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 110
T+++G L + + L F+ GE+ S K+ K G GF++FA+ AE L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 111 LNGTVI---GKQSVRLSW 125
N I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNW 140
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG------GYASNGAPGQGPQSEGDSS 54
+ EM G C RP+R+G ATP+ + + G+ S P PQ D++
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPV--PQF-ADTA 301
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++L G
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGY 361
Query: 115 VIGKQSVRLSWGRN 128
+G +RLSWGRN
Sbjct: 362 PLGNSRIRLSWGRN 375
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFAN 100
+S +S +IFVG L PNV + D+ F S+Y S KI V +G GFV+F +
Sbjct: 178 KSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Query: 101 RENAEEALHKLNGTVIGKQSVRL 123
+ + AL ++ G + G + +R+
Sbjct: 238 ENDQKSALAEMQGQICGDRPIRV 260
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG------FVQFANRENAEEALH 109
TT+++G L+P VT+ ++Q ++ G+ VK+ + G FV+FA+ A A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 110 KLNGTVIGKQSV-RLSWG 126
N + G + +L+W
Sbjct: 153 MNNKPIPGTNHLFKLNWA 170
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 21/139 (15%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEG--------- 51
+ M G C RP+RI A+P+ S+ A++ A G P S
Sbjct: 241 LMHMQGYLCQGRPLRISVASPK----------SRASIAADSALGIVPTSTSNRQPNQDLC 290
Query: 52 --DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 109
D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAIN 350
Query: 110 KLNGTVIGKQSVRLSWGRN 128
+ G ++G +RL+WG N
Sbjct: 351 TMQGALVGTSHIRLAWGHN 369
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 27 YQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASV 85
++ +++ GG N + P+ +IFVG L P D DL F S Y S
Sbjct: 160 FKLNWATGGGIQHNNFVSRDPE-------FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSA 212
Query: 86 KIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQFRAD 137
KI V + GFV+F++ + + AL + G + + +R+S + AD
Sbjct: 213 KIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAAD 270
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 40 NGAPGQGPQSE----GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG- 94
N +P P + G + T+++G L+P + ++Q ++ E +VK+ K
Sbjct: 65 NCSPSSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSS 124
Query: 95 -------FVQFANRENAEEALHKLNGTVI--GKQSVRLSWG 126
FVQF++ AE AL K N T+I + +L+W
Sbjct: 125 ETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWA 165
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 112 NGTVIGKQSVRLSWGR 127
G ++G +RLSWGR
Sbjct: 416 QGFIVGGSPIRLSWGR 431
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 57 TIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---PV---GKGCGFVQFANRENAEEALH 109
++FVG L P T+ DL F +++ + +V++ P+ + GFV+F + + AL
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 110 KLNGTVIGKQSVRLSWG 126
+++G +++R+++
Sbjct: 253 EMSGKWFQGRALRVAYA 269
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 36/163 (22%)
Query: 1 MTEMNGVYCSSRPMRIGAAT------------PRKSSGYQQQ-----YSSQG-GYASNGA 42
++EM GV+ + R +++G + R SS + + S+G + SNG
Sbjct: 222 LSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGN 281
Query: 43 PGQGPQSE------------------GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS 84
G + D +NTT+F+GGL VT+++LR F +G I
Sbjct: 282 NNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVY 341
Query: 85 VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
VKIPVGK CGFVQ+ +R +AE A+ + G I VRLSWGR
Sbjct: 342 VKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGR 384
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 106
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 107 ALHKLNGTVIGKQSVRL 123
AL ++ G + +++++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 108 LHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYGGQV 151
+L N VI Q ++L+WGR ++ D NQ G + G +
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ----DGANQQGGVAHSGLL 320
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 107
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 108 LHKL-NGTVIGKQSVRLSWGR 127
+L N V+ Q ++L+WGR
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N +I + + + WGR+ A +
Sbjct: 288 FNKLIINGRRLNVKWGRSQAAR 309
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 112 -NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYG 148
N VI ++L WG+ A K + G Q A+ G
Sbjct: 284 ANKLVIKGVRLKLMWGKPQAPKPEEDEAGRQGHVAHGG 321
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 115 VIGKQSVRLSWGRNPAN--KQF-RADYGN--QWSGAYYGGQVYDGY---GYAIPP 161
I V+ WG+ + K F + DY QWS Y Q Y Y G+ +PP
Sbjct: 281 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 335
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--------PVGKGCG------- 94
E D T++VG L +VT+ + Q FSQ G S K+ V G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 95 ------FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133
FV+F +A AL +NG I + V+++W P++++
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 107
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 114
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 115 VIGKQSVRLSWGRNPAN--KQF-RADYGN--QWSGAYYGGQVYDGY---GYAIPP 161
I V+ WG+ + K F + DY QWS Y Q Y Y G+ +PP
Sbjct: 264 TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP 318
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 129
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 105
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 106 EALHKLNGTVIGKQSVRLSWGRNPANKQ 133
AL +NG I + V+++W P++++
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111
D S T+++GGL+ +T++DLR F +GEI S+++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 112 -NGTVIGKQSVRLSWGRNPANKQFRADYGNQWSGAYYG 148
N VI ++L WG+ A K + G Q A+ G
Sbjct: 284 ANKLVIKGIRLKLMWGKPQAPKPEDDEAGRQGHVAHGG 321
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDVPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
+ASVKI + CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDAPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
+ASVKI + CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFV 96
G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV
Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFV 322
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRLSWGR 127
F NR +AE AL LNG +I ++L WG+
Sbjct: 323 AFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPANK 132
N ++ + + + WGR+ A +
Sbjct: 288 FNKFIVNGRRLNVKWGRSQAAR 309
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 32 SSQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88
+++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 102 TTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 161
Query: 89 V----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQW 142
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 162 FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 221
Query: 143 S-----GAYYGGQVY 152
GA YG ++Y
Sbjct: 222 KLSPVVGAVYGPELY 236
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 110
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 111 LNGTVIGKQSVRLSWGRNPA 130
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 32 SSQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88
+++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 94 TTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 153
Query: 89 V----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQW 142
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 154 FNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGW 213
Query: 143 S-----GAYYGGQVY 152
GA YG ++Y
Sbjct: 214 KLSPVVGAVYGPELY 228
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 33 SQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV 89
++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 137 TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF 196
Query: 90 ----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS 143
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 197 NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWK 256
Query: 144 -----GAYYGGQVY 152
GA YG ++Y
Sbjct: 257 LSPVVGAVYGPELY 270
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 33 SQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV 89
++GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 154 TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF 213
Query: 90 ----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS 143
KG GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W
Sbjct: 214 NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWK 273
Query: 144 -----GAYYGGQVY 152
GA YG ++Y
Sbjct: 274 LSPVVGAVYGPELY 287
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
+ +M G + R +R AT RK + Y S S S+ +N T++
Sbjct: 164 IQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTKQLSYDEV----VSQSSPNNCTVYC 218
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+ +NGT I
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHV 278
Query: 121 VRLSWGR------NPANKQFRADYG---NQWSGAYYG 148
V+ WG+ NP +Q + Y QW G +YG
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPPTYGQW-GQWYG 314
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ + C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGTVIGKQSVRLSWGRNPANKQ 133
AL +NG I + V+++W P++++
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
+ +M G + R +R AT RK + Y S S ++ SN T++
Sbjct: 164 IQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTKQLSYDEV----VNQSSPSNCTVYC 218
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120
GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+ +NGT I
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 121 VRLSWGR------NPANKQFRADYGN---QWSGAYYG 148
V+ WG+ NP +Q + Y QW G +YG
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQPYGQW-GQWYG 314
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 111
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 NGTVIGKQSVRLSWG-RNP 129
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEE 106
D T++VG L +VT+ + Q FSQ G + K+ + C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 107 ALHKLNGTVIGKQSVRLSWGRNPANKQ 133
AL +NG I + V+++W P++++
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQK 88
>sp|O94621|US109_SCHPO U1 snRNP-associated protein usp109 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp109 PE=1 SV=2
Length = 365
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVG 61
EM G +C R + + + K++ SS G Y G P Q D +NT ++V
Sbjct: 143 VEMQGAFCLKRSILVHSVKSDKNT----YLSSPGFY---GTP-QPLNQFTDPNNTAVYVH 194
Query: 62 GLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 121
L N+T ++LR F +GEI + V G + FA R AE+A++++N + +
Sbjct: 195 QLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEMNNFPLHGVRI 252
Query: 122 RLSWGRNPANKQFRADYGNQW 142
+LSW R P+ + W
Sbjct: 253 QLSWARPPSMALLPSKQSTYW 273
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGFVQFANRENAEEALHKLNG 113
+F+ +DP V++ D++ F +Y I++ + G F+ AN + + A ++ G
Sbjct: 88 LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQG 147
Query: 114 TVIGKQSVRL 123
K+S+ +
Sbjct: 148 AFCLKRSILV 157
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENA 104
SE +S + V + D DLRQ F Q+G+I V+I KG GFV F +A
Sbjct: 166 SETKASPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADA 225
Query: 105 EEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWSGAYYGGQVYDGYGYAIP 160
+ A KL+ TV+ + + + + R NK+ YGN W + G VY YA+P
Sbjct: 226 DRAREKLHSTVVEGRKIEVNNATARVMTNKKSVTPYGNGWKLSPVVGAVYGPELYAVP 283
>sp|Q66JB7|RFOX2_XENTR RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis GN=rbfox2
PE=2 SV=1
Length = 380
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 32 SSQGGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP 88
S+ G + G Q SE S T + V + D DLRQ F Q+G+I V+I
Sbjct: 83 STTDGSQTEGQQSQTQNSENSESKPTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 142
Query: 89 V----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQW 142
KG GFV F +A+ A KL+ TV+ + + + + R NK+ YGN W
Sbjct: 143 FNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKIEVNNATARVMTNKKSVTPYGNGW 202
Query: 143 S-----GAYYGGQVY 152
GA YG ++Y
Sbjct: 203 KLSPVVGAVYGPELY 217
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 46 GPQSEGDSS---NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CG--FV 96
G Q E D + +TT+++G + T+E L + FS+ GEI + + + K CG FV
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 97 QFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWSGAYYGGQVYDG 154
F +RE+ E+A+ ++GT++ + +R+ WG G QW GGQV D
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQE---------GRQWGRGRSGGQVRDE 131
Query: 155 YGYAIPP 161
Y P
Sbjct: 132 YRTDYDP 138
>sp|Q9NWB1|RFOX1_HUMAN RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1
SV=2
Length = 397
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 39 SNGAPGQGP--QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 145
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 217
Query: 146 YYGGQVYDG 154
Y + Y G
Sbjct: 218 VYSPEFYAG 226
>sp|Q95KI0|RFOX1_MACFA RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis
GN=RBFOX1 PE=2 SV=1
Length = 376
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 39 SNGAPGQGP--QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 100 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 159
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 145
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 160 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 219
Query: 146 YYGGQVYDG 154
Y + Y G
Sbjct: 220 VYSPEFYAG 228
>sp|Q5NVN8|RFOX1_PONAB RNA binding protein fox-1 homolog 1 OS=Pongo abelii GN=RBFOX1 PE=2
SV=1
Length = 382
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 39 SNGAPGQGP--QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKG 92
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 93 CGFVQFANRENAEEALHKLNGTVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GA 145
GFV F N +A+ A KL+GTV+ + + + + R NK+ Y N W GA
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGA 217
Query: 146 YYGGQVYDG 154
Y + Y G
Sbjct: 218 VYSPEFYAG 226
>sp|A6NFN3|RFOX3_HUMAN RNA binding protein fox-1 homolog 3 OS=Homo sapiens GN=RBFOX3 PE=2
SV=4
Length = 312
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 113
+ V + D DLRQ F Q+G+I V+I KG GFV F +A+ A KLNG
Sbjct: 101 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNG 160
Query: 114 TVIGKQSVRL--SWGRNPANKQFRADYGNQWS-----GAYYGGQVYDGYGYAIP 160
T++ + + + + R NK+ Y N W GA YG + Y G+ P
Sbjct: 161 TIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYP 214
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 112
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 113 GTVIGKQSV 121
G ++ + V
Sbjct: 186 GMLLNDKQV 194
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALH 109
++ ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 110 KLNGTVIGKQSVRLSWGRNPANKQFR 135
+L+G +I + + ++ + +++ R
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 28 QQQYSSQGGYASNGAPGQGPQSEGDSS-----NTTIFVGGLDPNVTDEDLRQPFSQYGEI 82
Q Q Q S A P + G ++ NT+++VG LD NVTD L F Q G +
Sbjct: 3 QVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTV 62
Query: 83 ASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQ 133
+V++ G G+V F N ++A A+ +LN + + +R+ + R+P+ ++
Sbjct: 63 VTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 110
T ++V L + TD+DL+ F +YG+I S + KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 111 LNG 113
LNG
Sbjct: 275 LNG 277
>sp|O95104|SFR15_HUMAN Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4
PE=1 SV=3
Length = 1147
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 41 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G P P++ S TT++VG LD T +D+ ++G I S+ + +GC ++ +
Sbjct: 494 GLPQVKPETASVCS-TTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 552
Query: 101 RENAEEALHKLN--GTVIGKQSVRLSWGRNPANKQFRADYGNQW 142
R++A AL KL+ + ++S++++W NK +ADY W
Sbjct: 553 RQDAYRALQKLSRGNYKVNQKSIKIAWA---LNKGIKADYKQYW 593
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKL 111
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 112 NGTVIGKQSVRLSWGRNPAN 131
NG + + +R+ +N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSN 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,605,653
Number of Sequences: 539616
Number of extensions: 3583646
Number of successful extensions: 9676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 511
Number of HSP's that attempted gapping in prelim test: 7700
Number of HSP's gapped (non-prelim): 1868
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)