Query 029716
Match_columns 189
No_of_seqs 253 out of 2228
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 99.9 2E-26 4.4E-31 173.5 12.1 121 1-132 121-241 (321)
2 TIGR01659 sex-lethal sex-letha 99.9 2E-22 4.3E-27 162.6 14.9 106 1-133 166-279 (346)
3 PLN03134 glycine-rich RNA-bind 99.9 2E-20 4.4E-25 133.5 16.1 82 50-131 29-116 (144)
4 KOG0117 Heterogeneous nuclear 99.8 9.4E-20 2E-24 145.9 10.6 107 4-134 229-336 (506)
5 TIGR01648 hnRNP-R-Q heterogene 99.8 1.5E-18 3.3E-23 147.2 15.8 102 7-132 207-310 (578)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.5E-18 5.5E-23 139.7 14.3 76 55-130 269-350 (352)
7 TIGR01645 half-pint poly-U bin 99.8 1.4E-18 3E-23 147.8 12.4 116 1-132 166-287 (612)
8 TIGR01628 PABP-1234 polyadenyl 99.8 1.4E-17 3.1E-22 143.1 13.7 121 1-130 236-365 (562)
9 KOG0121 Nuclear cap-binding pr 99.7 3.7E-18 8E-23 115.7 6.8 98 51-155 32-135 (153)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 5.4E-17 1.2E-21 137.1 13.1 129 1-129 330-480 (481)
11 KOG0107 Alternative splicing f 99.7 4.3E-17 9.4E-22 116.2 10.3 79 53-131 8-87 (195)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1E-16 2.2E-21 130.4 12.1 103 1-130 62-172 (352)
13 TIGR01659 sex-lethal sex-letha 99.7 9.5E-17 2.1E-21 129.7 10.6 79 50-128 102-186 (346)
14 TIGR01622 SF-CC1 splicing fact 99.7 1.8E-16 3.9E-21 133.2 12.7 111 3-128 149-265 (457)
15 KOG0105 Alternative splicing f 99.7 1.5E-16 3.3E-21 114.4 9.2 78 53-130 4-84 (241)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 8.3E-16 1.8E-20 130.8 15.4 128 3-130 241-376 (509)
17 PF00076 RRM_1: RNA recognitio 99.7 1.5E-16 3.2E-21 99.5 7.8 65 58-122 1-70 (70)
18 KOG0125 Ataxin 2-binding prote 99.7 1.5E-16 3.2E-21 123.3 9.0 84 48-131 89-176 (376)
19 TIGR01628 PABP-1234 polyadenyl 99.7 4E-16 8.6E-21 134.3 10.5 105 1-130 59-168 (562)
20 KOG0145 RNA-binding protein EL 99.7 1.5E-16 3.2E-21 120.1 6.7 106 1-133 100-213 (360)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 1.4E-15 3.1E-20 128.4 13.5 112 4-130 60-175 (481)
22 KOG0109 RNA-binding protein LA 99.6 3.2E-16 6.9E-21 119.8 7.2 101 1-132 53-153 (346)
23 PLN03120 nucleic acid binding 99.6 1.6E-15 3.5E-20 116.1 10.2 74 55-129 4-80 (260)
24 KOG0122 Translation initiation 99.6 3.9E-15 8.5E-20 111.3 10.5 80 50-129 184-269 (270)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 5.3E-15 1.1E-19 125.8 10.2 76 52-127 55-136 (578)
26 PF14259 RRM_6: RNA recognitio 99.6 8.3E-15 1.8E-19 91.9 8.5 65 58-122 1-70 (70)
27 KOG0127 Nucleolar protein fibr 99.6 5.2E-15 1.1E-19 121.5 9.4 127 2-131 65-198 (678)
28 KOG0144 RNA-binding protein CU 99.6 1.4E-15 3E-20 121.8 5.4 99 12-136 107-213 (510)
29 KOG4207 Predicted splicing fac 99.6 1.1E-14 2.5E-19 106.5 9.4 79 50-128 8-92 (256)
30 KOG0149 Predicted RNA-binding 99.6 8.1E-15 1.8E-19 109.2 8.7 76 52-128 9-90 (247)
31 KOG0131 Splicing factor 3b, su 99.6 2.2E-15 4.7E-20 108.2 5.3 106 2-133 69-181 (203)
32 KOG0123 Polyadenylate-binding 99.6 7.7E-15 1.7E-19 119.4 8.3 99 1-132 54-156 (369)
33 smart00362 RRM_2 RNA recogniti 99.6 3.5E-14 7.7E-19 88.3 9.4 68 57-124 1-72 (72)
34 PLN03121 nucleic acid binding 99.6 2.6E-14 5.5E-19 108.0 10.2 75 53-128 3-80 (243)
35 PLN03213 repressor of silencin 99.6 2E-14 4.4E-19 117.1 9.5 76 53-128 8-87 (759)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.9E-14 1.1E-18 119.9 12.2 128 1-128 354-501 (509)
37 KOG0113 U1 small nuclear ribon 99.6 6.5E-14 1.4E-18 107.6 11.4 85 51-135 97-187 (335)
38 PF13893 RRM_5: RNA recognitio 99.5 6.9E-14 1.5E-18 83.9 8.7 55 72-126 1-56 (56)
39 TIGR01645 half-pint poly-U bin 99.5 3.2E-14 6.9E-19 121.4 9.4 76 52-127 104-185 (612)
40 KOG0111 Cyclophilin-type pepti 99.5 1.2E-14 2.7E-19 107.3 5.0 83 51-133 6-94 (298)
41 KOG0114 Predicted RNA-binding 99.5 9.3E-14 2E-18 91.0 8.5 78 52-129 15-95 (124)
42 KOG0148 Apoptosis-promoting RN 99.5 9.4E-14 2E-18 105.4 8.5 76 55-130 62-143 (321)
43 KOG0109 RNA-binding protein LA 99.5 4.7E-14 1E-18 108.0 7.0 74 56-131 3-76 (346)
44 KOG0130 RNA-binding protein RB 99.5 8.1E-14 1.8E-18 95.5 7.4 84 48-131 65-154 (170)
45 KOG0117 Heterogeneous nuclear 99.5 2.3E-13 5.1E-18 109.5 11.2 81 47-127 75-162 (506)
46 KOG0127 Nucleolar protein fibr 99.5 3.3E-13 7.1E-18 111.1 11.2 77 54-130 291-379 (678)
47 TIGR01622 SF-CC1 splicing fact 99.5 4.6E-13 1E-17 112.6 11.8 78 51-129 85-168 (457)
48 KOG0145 RNA-binding protein EL 99.5 4.5E-13 9.6E-18 101.4 10.0 81 51-131 37-123 (360)
49 cd00590 RRM RRM (RNA recogniti 99.5 8.2E-13 1.8E-17 82.4 9.5 69 57-125 1-74 (74)
50 KOG0110 RNA-binding protein (R 99.4 2.6E-13 5.7E-18 114.5 6.5 112 1-130 577-694 (725)
51 KOG0131 Splicing factor 3b, su 99.4 3E-13 6.5E-18 97.2 5.7 76 52-127 6-87 (203)
52 KOG0415 Predicted peptidyl pro 99.4 4.4E-13 9.6E-18 105.3 7.0 87 46-132 230-322 (479)
53 smart00360 RRM RNA recognition 99.4 1.3E-12 2.9E-17 80.7 7.9 65 60-124 1-71 (71)
54 KOG0124 Polypyrimidine tract-b 99.4 9.7E-14 2.1E-18 109.4 3.0 115 1-131 172-292 (544)
55 KOG0126 Predicted RNA-binding 99.4 4E-14 8.7E-19 101.7 0.2 75 53-127 33-113 (219)
56 COG0724 RNA-binding proteins ( 99.4 2.4E-12 5.2E-17 99.9 9.7 74 55-128 115-194 (306)
57 KOG0146 RNA-binding protein ET 99.4 4.7E-13 1E-17 101.7 4.6 82 54-135 18-107 (371)
58 KOG0153 Predicted RNA-binding 99.4 3.4E-12 7.4E-17 100.0 9.4 81 48-128 221-302 (377)
59 KOG0108 mRNA cleavage and poly 99.4 2.2E-12 4.7E-17 106.3 7.7 77 56-132 19-101 (435)
60 KOG0132 RNA polymerase II C-te 99.4 5.1E-12 1.1E-16 107.7 10.1 82 52-133 418-499 (894)
61 KOG0116 RasGAP SH3 binding pro 99.3 1.6E-11 3.6E-16 100.6 12.5 82 52-134 285-372 (419)
62 KOG0144 RNA-binding protein CU 99.3 3.3E-12 7.2E-17 102.6 8.3 82 51-132 30-120 (510)
63 KOG0147 Transcriptional coacti 99.3 3.4E-12 7.4E-17 105.2 5.8 114 3-129 239-358 (549)
64 KOG0146 RNA-binding protein ET 99.3 8.2E-12 1.8E-16 95.0 5.3 85 49-133 279-369 (371)
65 KOG4212 RNA-binding protein hn 99.2 9E-11 1.9E-15 94.7 11.1 78 53-130 42-125 (608)
66 KOG0124 Polypyrimidine tract-b 99.2 6.4E-12 1.4E-16 99.3 4.4 71 55-125 113-189 (544)
67 KOG4206 Spliceosomal protein s 99.2 3.6E-11 7.7E-16 89.5 8.1 79 54-132 8-93 (221)
68 KOG4205 RNA-binding protein mu 99.2 7.3E-11 1.6E-15 93.5 10.1 106 7-134 70-181 (311)
69 smart00361 RRM_1 RNA recogniti 99.2 8.8E-11 1.9E-15 73.6 7.6 56 69-124 2-70 (70)
70 KOG4206 Spliceosomal protein s 99.2 1.4E-10 3E-15 86.4 9.7 126 2-127 70-220 (221)
71 KOG4212 RNA-binding protein hn 99.1 1.1E-10 2.4E-15 94.2 6.7 76 51-126 532-608 (608)
72 KOG0110 RNA-binding protein (R 99.1 1.6E-10 3.5E-15 98.0 7.9 72 56-127 516-596 (725)
73 KOG0123 Polyadenylate-binding 99.1 2.5E-10 5.4E-15 93.2 6.1 110 1-129 132-246 (369)
74 KOG1456 Heterogeneous nuclear 99.0 4.8E-09 1E-13 83.4 12.5 86 49-134 114-204 (494)
75 KOG0106 Alternative splicing f 99.0 3.7E-10 8E-15 84.7 5.2 74 56-131 2-75 (216)
76 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.5E-09 3.3E-14 90.4 9.3 79 52-130 402-486 (940)
77 KOG1457 RNA binding protein (c 99.0 3.4E-09 7.4E-14 78.9 9.7 82 52-133 31-122 (284)
78 KOG1190 Polypyrimidine tract-b 99.0 2.6E-09 5.7E-14 85.7 9.3 128 1-128 352-490 (492)
79 KOG0105 Alternative splicing f 99.0 5E-08 1.1E-12 70.8 14.5 115 1-117 62-176 (241)
80 KOG0106 Alternative splicing f 99.0 1.6E-09 3.5E-14 81.2 6.2 117 1-127 52-169 (216)
81 KOG4208 Nucleolar RNA-binding 99.0 3.4E-09 7.4E-14 78.0 7.7 80 50-129 44-130 (214)
82 KOG4205 RNA-binding protein mu 98.9 1E-09 2.2E-14 87.0 5.1 77 54-131 5-87 (311)
83 KOG4660 Protein Mei2, essentia 98.9 1.2E-09 2.6E-14 90.6 5.0 72 51-122 71-143 (549)
84 KOG0151 Predicted splicing reg 98.9 5.2E-09 1.1E-13 89.0 7.7 81 48-128 167-256 (877)
85 KOG0533 RRM motif-containing p 98.8 1.9E-08 4.1E-13 77.1 8.4 81 51-131 79-164 (243)
86 KOG0120 Splicing factor U2AF, 98.7 3.4E-08 7.4E-13 82.4 7.6 125 1-128 348-491 (500)
87 KOG1548 Transcription elongati 98.7 7.7E-08 1.7E-12 75.9 9.1 80 48-127 127-219 (382)
88 PF11608 Limkain-b1: Limkain b 98.7 1.1E-07 2.4E-12 60.3 7.6 70 56-129 3-77 (90)
89 KOG1548 Transcription elongati 98.7 1.2E-07 2.6E-12 74.8 8.9 128 1-128 200-351 (382)
90 KOG1190 Polypyrimidine tract-b 98.7 1.7E-07 3.6E-12 75.5 9.6 81 55-135 297-379 (492)
91 KOG0226 RNA-binding proteins [ 98.7 4.3E-08 9.4E-13 74.3 5.8 79 51-129 186-270 (290)
92 KOG4209 Splicing factor RNPS1, 98.7 7.8E-08 1.7E-12 73.7 6.8 79 50-129 96-180 (231)
93 KOG4454 RNA binding protein (R 98.6 1.8E-08 3.9E-13 74.9 2.1 76 52-127 6-85 (267)
94 PF08777 RRM_3: RNA binding mo 98.6 2.3E-07 5E-12 62.6 6.4 69 56-124 2-75 (105)
95 KOG1456 Heterogeneous nuclear 98.6 1.5E-06 3.2E-11 69.5 11.7 80 51-130 283-364 (494)
96 KOG4211 Splicing factor hnRNP- 98.5 8E-07 1.7E-11 73.2 8.6 77 52-130 7-87 (510)
97 KOG1457 RNA binding protein (c 98.5 2E-07 4.3E-12 69.6 4.1 64 54-117 209-274 (284)
98 PF04059 RRM_2: RNA recognitio 98.4 2E-06 4.2E-11 57.0 8.3 75 56-130 2-88 (97)
99 KOG0120 Splicing factor U2AF, 98.4 7.1E-07 1.5E-11 74.7 6.4 84 50-133 284-373 (500)
100 KOG1995 Conserved Zn-finger pr 98.3 3.9E-06 8.4E-11 66.8 9.0 83 49-131 60-156 (351)
101 KOG0147 Transcriptional coacti 98.3 2.5E-06 5.4E-11 71.1 7.7 58 70-127 468-526 (549)
102 KOG4211 Splicing factor hnRNP- 98.3 4.3E-06 9.4E-11 69.0 8.7 74 53-127 101-180 (510)
103 PF14605 Nup35_RRM_2: Nup53/35 98.2 4.2E-06 9.2E-11 49.2 5.1 52 56-108 2-53 (53)
104 PF05172 Nup35_RRM: Nup53/35/4 98.1 1.7E-05 3.6E-10 52.9 6.8 72 54-127 5-90 (100)
105 KOG1855 Predicted RNA-binding 98.1 8.8E-06 1.9E-10 66.2 6.0 63 51-113 227-308 (484)
106 COG5175 MOT2 Transcriptional r 98.0 1.3E-05 2.8E-10 63.4 6.2 74 54-127 113-201 (480)
107 KOG4849 mRNA cleavage factor I 97.9 3.2E-05 6.9E-10 61.6 6.8 69 55-123 80-156 (498)
108 KOG2416 Acinus (induces apopto 97.8 2.7E-05 5.8E-10 65.8 5.2 85 47-131 436-524 (718)
109 KOG4210 Nuclear localization s 97.7 4.2E-05 9.2E-10 60.6 4.6 78 54-132 183-267 (285)
110 KOG0112 Large RNA-binding prot 97.7 9.2E-05 2E-09 65.3 6.0 82 51-132 451-534 (975)
111 PF08952 DUF1866: Domain of un 97.7 0.00025 5.4E-09 50.2 7.1 75 52-129 24-107 (146)
112 KOG4307 RNA binding protein RB 97.6 0.00024 5.3E-09 61.3 7.9 71 55-125 867-943 (944)
113 KOG3152 TBP-binding protein, a 97.6 3.6E-05 7.9E-10 58.7 2.4 67 54-120 73-157 (278)
114 KOG0115 RNA-binding protein p5 97.6 0.00019 4.2E-09 54.9 5.9 80 3-116 13-97 (275)
115 KOG2314 Translation initiation 97.5 0.00045 9.8E-09 58.3 7.5 73 53-125 56-140 (698)
116 KOG2202 U2 snRNP splicing fact 97.5 5.6E-05 1.2E-09 57.8 1.8 56 71-126 84-145 (260)
117 KOG1996 mRNA splicing factor [ 97.3 0.00077 1.7E-08 52.7 6.3 58 70-127 301-365 (378)
118 KOG4676 Splicing factor, argin 97.2 0.00037 7.9E-09 56.4 4.0 72 56-128 8-89 (479)
119 KOG1365 RNA-binding protein Fu 97.2 0.0011 2.4E-08 53.6 6.3 77 52-128 277-361 (508)
120 PF10309 DUF2414: Protein of u 97.2 0.0027 5.9E-08 38.3 6.6 55 55-111 5-62 (62)
121 KOG2193 IGF-II mRNA-binding pr 97.1 0.0004 8.8E-09 56.7 3.2 76 56-131 2-78 (584)
122 PF04847 Calcipressin: Calcipr 97.1 0.0021 4.5E-08 47.7 6.6 63 68-130 8-72 (184)
123 KOG0129 Predicted RNA-binding 97.1 0.0028 6.1E-08 53.1 7.8 60 52-112 256-327 (520)
124 KOG2591 c-Mpl binding protein, 97.0 0.0013 2.9E-08 55.5 5.6 73 51-124 171-247 (684)
125 KOG0129 Predicted RNA-binding 97.0 0.0024 5.1E-08 53.5 6.9 62 49-110 364-432 (520)
126 KOG2135 Proteins containing th 96.9 0.00093 2E-08 55.3 3.2 78 50-128 367-445 (526)
127 PF15023 DUF4523: Protein of u 96.6 0.016 3.5E-07 40.8 7.6 75 51-127 82-160 (166)
128 PF08675 RNA_bind: RNA binding 96.6 0.021 4.5E-07 36.5 7.2 57 53-112 7-63 (87)
129 KOG4574 RNA-binding protein (c 96.5 0.0017 3.7E-08 57.3 2.4 76 58-133 301-378 (1007)
130 KOG0128 RNA-binding protein SA 96.4 0.0035 7.5E-08 55.5 3.5 77 54-130 735-816 (881)
131 KOG4285 Mitotic phosphoprotein 96.3 0.025 5.3E-07 44.6 7.5 74 55-130 197-271 (350)
132 KOG1365 RNA-binding protein Fu 96.3 0.048 1E-06 44.5 9.2 68 55-123 161-237 (508)
133 KOG4307 RNA binding protein RB 96.2 0.0049 1.1E-07 53.5 3.7 77 49-125 428-510 (944)
134 PF07576 BRAP2: BRCA1-associat 96.2 0.08 1.7E-06 35.9 8.7 63 55-117 13-80 (110)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.016 3.6E-07 42.7 5.1 76 53-128 5-97 (176)
136 KOG0112 Large RNA-binding prot 95.9 0.0022 4.8E-08 56.9 0.2 79 50-128 367-450 (975)
137 KOG2253 U1 snRNP complex, subu 95.9 0.0069 1.5E-07 52.3 3.0 78 46-126 31-108 (668)
138 KOG2068 MOT2 transcription fac 95.9 0.0029 6.3E-08 50.4 0.6 75 54-128 76-162 (327)
139 KOG0128 RNA-binding protein SA 95.7 0.00045 9.7E-09 60.8 -4.9 64 53-116 665-734 (881)
140 PF03880 DbpA: DbpA RNA bindin 95.5 0.098 2.1E-06 32.7 6.6 59 65-126 11-74 (74)
141 KOG2193 IGF-II mRNA-binding pr 95.4 0.00092 2E-08 54.7 -3.8 99 2-129 55-157 (584)
142 KOG2318 Uncharacterized conser 94.6 0.24 5.1E-06 42.6 8.2 76 52-127 171-304 (650)
143 COG0724 RNA-binding proteins ( 94.5 0.1 2.2E-06 39.9 5.7 86 1-90 174-260 (306)
144 KOG4019 Calcineurin-mediated s 94.5 0.031 6.7E-07 40.9 2.4 78 54-131 9-92 (193)
145 KOG0804 Cytoplasmic Zn-finger 94.1 0.2 4.3E-06 41.8 6.5 67 52-118 71-142 (493)
146 PF11767 SET_assoc: Histone ly 93.8 0.54 1.2E-05 28.8 6.6 55 66-123 11-65 (66)
147 KOG4660 Protein Mei2, essentia 92.3 0.33 7.3E-06 41.4 5.4 41 91-131 431-475 (549)
148 KOG4410 5-formyltetrahydrofola 91.1 1.3 2.8E-05 35.0 7.1 49 53-101 328-377 (396)
149 KOG0111 Cyclophilin-type pepti 90.2 0.15 3.2E-06 38.7 1.2 25 1-25 69-93 (298)
150 PF13893 RRM_5: RNA recognitio 89.9 0.085 1.8E-06 30.8 -0.2 18 2-19 39-56 (56)
151 PLN03134 glycine-rich RNA-bind 86.3 0.42 9.1E-06 34.0 1.5 25 1-25 93-117 (144)
152 KOG4210 Nuclear localization s 85.0 0.76 1.7E-05 36.6 2.5 78 53-130 86-169 (285)
153 PRK11634 ATP-dependent RNA hel 82.5 9.3 0.0002 34.0 8.4 68 56-127 487-561 (629)
154 KOG0108 mRNA cleavage and poly 81.5 0.2 4.2E-06 42.2 -2.2 25 1-25 77-101 (435)
155 PF00403 HMA: Heavy-metal-asso 81.4 8.5 0.00019 22.5 6.0 54 57-110 1-58 (62)
156 KOG4483 Uncharacterized conser 80.4 3.8 8.3E-05 34.0 4.8 56 54-110 390-446 (528)
157 COG5638 Uncharacterized conser 79.4 13 0.00028 31.1 7.6 75 51-125 142-294 (622)
158 KOG4207 Predicted splicing fac 78.6 0.76 1.7E-05 34.6 0.4 24 1-24 72-95 (256)
159 PF10567 Nab6_mRNP_bdg: RNA-re 76.1 5.5 0.00012 31.7 4.4 76 52-127 12-106 (309)
160 KOG4676 Splicing factor, argin 72.4 0.46 9.9E-06 39.1 -2.3 62 55-117 151-214 (479)
161 PF15513 DUF4651: Domain of un 70.5 10 0.00022 22.9 3.6 19 70-88 9-27 (62)
162 KOG4454 RNA binding protein (R 69.2 1.2 2.5E-05 33.9 -0.6 60 56-115 81-149 (267)
163 PF02714 DUF221: Domain of unk 68.6 6.3 0.00014 31.7 3.5 39 94-134 1-39 (325)
164 COG2608 CopZ Copper chaperone 67.7 22 0.00048 21.7 5.1 45 56-100 4-48 (71)
165 KOG2295 C2H2 Zn-finger protein 66.8 1.1 2.4E-05 38.4 -1.2 68 53-120 229-302 (648)
166 PF12402 nlz1: NocA-like zinc- 65.5 2.8 6.1E-05 24.1 0.6 11 178-188 10-20 (55)
167 KOG0126 Predicted RNA-binding 62.3 5.7 0.00012 29.5 1.8 25 1-25 94-118 (219)
168 PRK14548 50S ribosomal protein 59.2 33 0.00071 22.0 4.7 52 59-110 24-80 (84)
169 PF03468 XS: XS domain; Inter 59.1 11 0.00025 25.7 2.8 53 57-109 10-75 (116)
170 KOG0125 Ataxin 2-binding prote 58.7 4.2 9.2E-05 32.8 0.7 24 2-25 154-177 (376)
171 KOG1295 Nonsense-mediated deca 55.3 20 0.00043 29.6 4.0 63 54-116 6-77 (376)
172 PF07292 NID: Nmi/IFP 35 domai 54.6 9 0.0002 24.8 1.6 27 51-77 48-74 (88)
173 PF07530 PRE_C2HC: Associated 54.5 25 0.00055 21.5 3.5 57 70-129 2-65 (68)
174 KOG4008 rRNA processing protei 53.3 11 0.00025 29.0 2.2 36 50-85 35-70 (261)
175 PLN03213 repressor of silencin 47.6 7.3 0.00016 33.4 0.4 21 1-21 67-87 (759)
176 PF12829 Mhr1: Transcriptional 45.7 64 0.0014 21.1 4.5 51 62-112 19-72 (91)
177 smart00596 PRE_C2HC PRE_C2HC d 43.4 38 0.00083 20.9 3.0 56 70-128 2-64 (69)
178 PF03439 Spt5-NGN: Early trans 40.6 69 0.0015 20.3 4.1 35 81-115 33-68 (84)
179 PF08544 GHMP_kinases_C: GHMP 40.0 88 0.0019 19.1 6.0 42 70-112 37-80 (85)
180 KOG0107 Alternative splicing f 38.9 18 0.00038 26.8 1.2 24 1-24 64-87 (195)
181 PF11823 DUF3343: Protein of u 38.4 57 0.0012 19.9 3.4 26 92-117 2-27 (73)
182 TIGR03636 L23_arch archaeal ri 38.4 97 0.0021 19.5 4.4 52 58-109 16-72 (77)
183 PF08734 GYD: GYD domain; Int 37.1 1.2E+02 0.0025 19.6 5.8 43 70-112 23-68 (91)
184 PF13689 DUF4154: Domain of un 34.4 1.2E+02 0.0025 21.3 4.9 19 2-20 43-61 (145)
185 PF11411 DNA_ligase_IV: DNA li 33.7 30 0.00064 18.4 1.3 16 65-80 19-34 (36)
186 KOG4365 Uncharacterized conser 33.4 5.5 0.00012 33.5 -2.3 76 56-132 4-85 (572)
187 COG0445 GidA Flavin-dependent 31.0 1E+02 0.0022 27.3 4.7 52 47-100 293-344 (621)
188 KOG0156 Cytochrome P450 CYP2 s 30.9 1E+02 0.0023 26.6 4.9 59 59-121 36-97 (489)
189 KOG2891 Surface glycoprotein [ 30.4 67 0.0015 25.6 3.3 76 54-129 148-268 (445)
190 PF08156 NOP5NT: NOP5NT (NUC12 29.5 20 0.00043 21.9 0.2 38 70-111 27-64 (67)
191 PRK10629 EnvZ/OmpR regulon mod 27.7 2.1E+02 0.0046 19.8 8.1 72 54-127 34-109 (127)
192 COG5353 Uncharacterized protei 25.4 2.3E+02 0.0051 20.4 4.9 49 55-103 87-154 (161)
193 PRK11901 hypothetical protein; 25.3 2.4E+02 0.0051 23.1 5.6 58 53-114 243-307 (327)
194 KOG2671 Putative RNA methylase 25.2 1E+02 0.0022 25.7 3.5 44 65-108 12-57 (421)
195 PF09707 Cas_Cas2CT1978: CRISP 24.6 1.5E+02 0.0033 19.0 3.7 45 54-98 24-71 (86)
196 PF15628 RRM_DME: RRM in Demet 23.6 98 0.0021 20.6 2.6 57 4-78 17-77 (103)
197 COG1098 VacB Predicted RNA bin 23.1 2.1E+02 0.0045 20.0 4.2 46 79-124 5-59 (129)
198 COG5470 Uncharacterized conser 22.6 2.1E+02 0.0044 18.9 3.9 38 71-108 24-70 (96)
199 COG0030 KsgA Dimethyladenosine 22.6 1.4E+02 0.003 23.5 3.8 31 55-85 95-125 (259)
200 COG0150 PurM Phosphoribosylami 22.4 25 0.00055 28.7 -0.3 45 70-114 276-322 (345)
201 KOG0862 Synaptobrevin/VAMP-lik 22.1 53 0.0011 25.0 1.3 30 70-101 89-119 (216)
202 COG0858 RbfA Ribosome-binding 20.6 2.3E+02 0.005 19.4 4.1 33 81-113 35-71 (118)
203 COG0002 ArgC Acetylglutamate s 20.2 1.3E+02 0.0028 24.8 3.3 31 57-88 248-279 (349)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2e-26 Score=173.55 Aligned_cols=121 Identities=31% Similarity=0.530 Sum_probs=104.2
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++|||.||++|.||.+||.++.... +......+.-.....+.+|+|||+|++..++|++|++.|++||
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~-----------n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEM-----------NGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred HHHhCCeeeccceeeccccccCcccc-----------CCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 57899999999999999999986321 1111222233445677899999999999999999999999999
Q ss_pred CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 81 ~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
.|.+|++.++++|+||.|++.|+|..||..+|+.+|.|..++|.|.+.....
T Consensus 190 ~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 190 PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999999999999999999999999999999999976553
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.89 E-value=2e-22 Score=162.59 Aligned_cols=106 Identities=26% Similarity=0.516 Sum_probs=91.4
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++|||..|.+++|+|.++.+.... ...++|||+|||..+|+++|+++|++||
T Consensus 166 i~~LnG~~l~gr~i~V~~a~p~~~~---------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 166 IKNLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HHHcCCCccCCceeeeecccccccc---------------------------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 4679999999999999998754211 2356899999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeeccCCCCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPANKQ 133 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~ 133 (189)
+|+.++|+++ ++||||+|.+.++|++||+.||+..|.+ +.|+|.+|+......
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 9999999875 4899999999999999999999999866 689999998765443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=2e-20 Score=133.53 Aligned_cols=82 Identities=26% Similarity=0.554 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+||++.+++++|+++|++||.|.+++|+.+ ++||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33556789999999999999999999999999999998754 699999999999999999999999999999999
Q ss_pred eeccCCCC
Q 029716 124 SWGRNPAN 131 (189)
Q Consensus 124 ~~a~~~~~ 131 (189)
++++++..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986544
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=9.4e-20 Score=145.89 Aligned_cols=107 Identities=24% Similarity=0.443 Sum_probs=94.8
Q ss_pred cCC-ceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 4 MNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 4 mnG-~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
|+| ..|+|..|.|.||.++.... .........|||.||+.++|++.|+++|+.||.|
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~d----------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~v 286 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPD----------------------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKV 286 (506)
T ss_pred cCCceeecCCcceeeccCcccCCC----------------------hhhhhheeeeeeeccchhhhHHHHHHHHHhccce
Confidence 444 67899999999999986653 3345567899999999999999999999999999
Q ss_pred eEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCCCC
Q 029716 83 ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 134 (189)
Q Consensus 83 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 134 (189)
.+|+.++ .||||+|.+.++|.+|++.+|+++|+|..|.|.+|+|...++.
T Consensus 287 eRVkk~r--DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 287 ERVKKPR--DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred EEeeccc--ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 9998875 5999999999999999999999999999999999999876544
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=1.5e-18 Score=147.20 Aligned_cols=102 Identities=22% Similarity=0.397 Sum_probs=88.2
Q ss_pred ceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccc--CCeeE
Q 029716 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIAS 84 (189)
Q Consensus 7 ~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~ 84 (189)
..|+|+.|+|+|+.++.... .......++|||+||++++++++|+++|++| |+|++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred eEecCceEEEEeeccccccc----------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 46899999999998764331 1223345799999999999999999999999 99999
Q ss_pred EEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 85 VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 85 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
|+++ ++||||+|++.++|++|++.||+.+|+|+.|+|+||+++...
T Consensus 265 V~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 265 VKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred EEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9877 579999999999999999999999999999999999987654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=2.5e-18 Score=139.74 Aligned_cols=76 Identities=36% Similarity=0.575 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
..+|||+|||+.+++++|+++|++||.|.+++|+++ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 447999999999999999999999999999999864 69999999999999999999999999999999999987
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 65
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=1.4e-18 Score=147.82 Aligned_cols=116 Identities=22% Similarity=0.447 Sum_probs=92.9
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++|||..|+||+|+|.+........ . ............++|||+||+.++++++|+++|+.||
T Consensus 166 i~~lnG~~i~GR~IkV~rp~~~p~a~--~--------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG 229 (612)
T TIGR01645 166 LEQMNGQMLGGRNIKVGRPSNMPQAQ--P--------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 229 (612)
T ss_pred HHhcCCeEEecceeeecccccccccc--c--------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcC
Confidence 46799999999999998644321110 0 0000111223457999999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
.|.+++|.++ +|||||+|.+.++|.+||+.||+..|+|+.|+|.++.++...
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999764 689999999999999999999999999999999999865433
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.75 E-value=1.4e-17 Score=143.15 Aligned_cols=121 Identities=28% Similarity=0.488 Sum_probs=95.5
Q ss_pred CCccCCceec----CcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHh
Q 029716 1 MTEMNGVYCS----SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF 76 (189)
Q Consensus 1 i~~mnG~~l~----gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 76 (189)
|++|||..|. |+.|.|.++..+..+.......... ...........++|||+||+..+++++|+++|
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~---------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEE---------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred HHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHh---------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 3578999999 9999999988765442110000000 00011223456789999999999999999999
Q ss_pred cccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 77 SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 77 ~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
++||.|.+|+++.+ ++||||+|.+.++|++|++.||++.|+|+.|.|.+|..+.
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999764 5899999999999999999999999999999999998654
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.7e-18 Score=115.70 Aligned_cols=98 Identities=31% Similarity=0.579 Sum_probs=82.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
....+++|||+||+..++|++|.++|+++|+|..|.+-.++ |||||+|.+.++|+.|++-+++..++.+.|+++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34578999999999999999999999999999999887653 899999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029716 125 WGRNPANKQFRADYGNQWSGAYYGGQVYDGY 155 (189)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 155 (189)
|..-- ..++|++.+..|++.+..|
T Consensus 112 ~D~GF-------~eGRQyGRG~sGGqVrde~ 135 (153)
T KOG0121|consen 112 WDAGF-------VEGRQYGRGKSGGQVRDEY 135 (153)
T ss_pred ccccc-------hhhhhhcCCCCCCeechhh
Confidence 97632 2346666666666554443
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.73 E-value=5.4e-17 Score=137.09 Aligned_cols=129 Identities=19% Similarity=0.349 Sum_probs=93.0
Q ss_pred CCccCCceecCcceEeecCCCCCCCCccccc--------c-cCCC-CCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHH
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQY--------S-SQGG-YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDE 70 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~--------~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 70 (189)
|+.|||..|.|++|+|.++..+.....+... . .... .................++.+|||.|||.+++++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 4679999999999999998765322111000 0 0000 0000000001111223567899999999999999
Q ss_pred HHHHHhcccCC--eeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCee------EEEeeccCC
Q 029716 71 DLRQPFSQYGE--IASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQS------VRLSWGRNP 129 (189)
Q Consensus 71 ~l~~~F~~~G~--v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~------l~v~~a~~~ 129 (189)
+|+++|+.||. |..+++... +++|||+|.+.++|.+||..||+..|.++. |+|+|++++
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999998 888888654 489999999999999999999999999885 999999864
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=4.3e-17 Score=116.15 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
...++|||+||+..+++.+|+.+|..||.|..|.|.+. .+||||+|++..+|+.|+..|+|+.|+|..|+|++..-...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 45799999999999999999999999999999987664 59999999999999999999999999999999999986554
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=1e-16 Score=130.37 Aligned_cols=103 Identities=28% Similarity=0.617 Sum_probs=90.0
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|+.|||..|.|++|+|.++.+.... ...++|||+|||..+++++|+++|++||
T Consensus 62 i~~l~g~~l~g~~i~v~~a~~~~~~---------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 62 VNSLNGLRLQNKTIKVSYARPSSDS---------------------------IKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred HhhcccEEECCeeEEEEeecccccc---------------------------cccceEEECCccccCCHHHHHHHHhccC
Confidence 4689999999999999998765322 2356899999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeeccCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 130 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 130 (189)
.|..+++..+ ++||||+|++.++|++|++.|||..+.+ ..|.|.|+..+.
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988653 5899999999999999999999999876 578999987665
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=9.5e-17 Score=129.69 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||+++|+++|+++|+.||+|++|+|+++ ++||||+|.++++|++||+.|++.+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557889999999999999999999999999999999764 489999999999999999999999999999999
Q ss_pred eeccC
Q 029716 124 SWGRN 128 (189)
Q Consensus 124 ~~a~~ 128 (189)
.|+++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 99865
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=1.8e-16 Score=133.18 Aligned_cols=111 Identities=27% Similarity=0.528 Sum_probs=90.0
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
+|||..|.|++|.|.++............ ......+..++|||+|||..+++++|+++|+.||.|
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~---------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAAT---------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhccc---------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 48999999999999887654333110000 000112337899999999999999999999999999
Q ss_pred eEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 83 ~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
..|.+..+ ++||||+|.+.++|.+|++.|||..|.|+.|+|.|+..
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99998843 68999999999999999999999999999999999874
No 15
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.5e-16 Score=114.39 Aligned_cols=78 Identities=22% Similarity=0.455 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
...++|||+|||.++.+.+|+++|.+||.|.+|.+... ..||||+|++..+|+.||..-+|..++|++|+|+|++.-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46789999999999999999999999999999988653 379999999999999999999999999999999999864
Q ss_pred C
Q 029716 130 A 130 (189)
Q Consensus 130 ~ 130 (189)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 4
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.69 E-value=8.3e-16 Score=130.75 Aligned_cols=128 Identities=14% Similarity=0.233 Sum_probs=91.5
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCC--CCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY--ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
+|||..|.|++|+|.+................... ..................++|||+|||..+++++|+++|+.||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 58999999999999866543211100000000000 0000000001111234568999999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.|..+.|+++ +|||||+|.+.++|..||+.|||..|.|+.|.|.+|....
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 9999988753 6999999999999999999999999999999999997543
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.5e-16 Score=99.54 Aligned_cols=65 Identities=48% Similarity=0.847 Sum_probs=61.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 58 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
|||+|||.++++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988773 58999999999999999999999999999885
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=123.33 Aligned_cols=84 Identities=26% Similarity=0.470 Sum_probs=76.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.++.....++|+|.|||+...|-||+..|.+||.|.+|+|+.+ |||+||+|++.++|++|-++|||..|.||+|+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3344556789999999999999999999999999999999863 799999999999999999999999999999999
Q ss_pred eeccCCCC
Q 029716 124 SWGRNPAN 131 (189)
Q Consensus 124 ~~a~~~~~ 131 (189)
..|..+-.
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99987654
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=4e-16 Score=134.26 Aligned_cols=105 Identities=30% Similarity=0.462 Sum_probs=89.7
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++||+..|.|++|+|.|+...... ......+|||+||+.++++++|+++|+.||
T Consensus 59 l~~ln~~~i~gk~i~i~~s~~~~~~-------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 59 LETMNFKRLGGKPIRIMWSQRDPSL-------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred HHHhCCCEECCeeEEeecccccccc-------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcC
Confidence 4678999999999999998654221 112356899999999999999999999999
Q ss_pred CeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 81 ~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.|.+|++..+ ++||||+|.+.++|++|++.||+..+.++.|.|.......
T Consensus 114 ~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 114 NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 9999998753 6899999999999999999999999999999997765443
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.5e-16 Score=120.08 Aligned_cols=106 Identities=30% Similarity=0.595 Sum_probs=93.3
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|..|||..|..+.|+|.+|.+.+... ....|||.+||..+|..+|+++|++||
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~I---------------------------k~aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDSI---------------------------KDANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhhh---------------------------cccceEEecCCccchHHHHHHHHHHhh
Confidence 46799999999999999999986553 568899999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCe--eEEEeeccCCCCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQ--SVRLSWGRNPANKQ 133 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~~~~ 133 (189)
.|..-+|..| +|.+||.|+..++|+.||+.|||.+-.|. +|.|+||..+....
T Consensus 153 rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 153 RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9987777653 79999999999999999999999987654 89999999876543
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.66 E-value=1.4e-15 Score=128.43 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=88.5
Q ss_pred cCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee
Q 029716 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (189)
Q Consensus 4 mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~ 83 (189)
+|+..|.|++|+|+|+..+....... ............+|||.||++.+|+++|+++|+.||.|.
T Consensus 60 ~~~~~l~g~~l~v~~s~~~~~~~~~~---------------~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 60 SVPIYIRGQPAFFNYSTSQEIKRDGN---------------SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred cCCceEcCeEEEEEecCCcccccCCC---------------CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 58899999999999997653211000 000011122345899999999999999999999999999
Q ss_pred EEEEeCCC--cEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeeccCCC
Q 029716 84 SVKIPVGK--GCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 130 (189)
Q Consensus 84 ~~~~~~~~--g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 130 (189)
+|.|.+++ ++|||+|.+.++|.+|++.|||..|.+ +.|+|.|++...
T Consensus 125 ~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 125 RIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred EEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 99998765 489999999999999999999999954 589999998654
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.65 E-value=3.2e-16 Score=119.80 Aligned_cols=101 Identities=23% Similarity=0.459 Sum_probs=92.6
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|..|||..|+|..|.|+.++.++ ..+++|+|+||.+.++..+|+..|++||
T Consensus 53 irNLhgYtLhg~nInVeaSksKs-----------------------------k~stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKS-----------------------------KASTKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred HhhcccceecceEEEEEeccccC-----------------------------CCccccccCCCCccccCHHHhhhhcccC
Confidence 56799999999999999888873 3579999999999999999999999999
Q ss_pred CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 81 ~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
.|.+|+|+ ++|+||+|+-.++|..|++.|++.+|.|++++|.++.++...
T Consensus 104 pviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 104 PVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred Cceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 99999999 579999999999999999999999999999999999876543
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=116.09 Aligned_cols=74 Identities=28% Similarity=0.398 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.++|||+||++.+++++|+++|+.||+|.+|.|..+ ++||||+|.+.++|+.||. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999999875 5899999999999999996 9999999999999998743
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.9e-15 Score=111.34 Aligned_cols=80 Identities=28% Similarity=0.540 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|-|.||+.++++++|+++|.+||.|.++.|.++ ||||||+|.+.++|++||..|||.-++.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 34557889999999999999999999999999999999875 699999999999999999999999999999999
Q ss_pred eeccCC
Q 029716 124 SWGRNP 129 (189)
Q Consensus 124 ~~a~~~ 129 (189)
+|++|.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999975
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=5.3e-15 Score=125.81 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~ 125 (189)
....++|||+|||.+++|++|+++|++||.|.+++|++ +++||||+|.+.++|++||+.||+.+|. ++.|.|++
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34569999999999999999999999999999999875 3699999999999999999999999985 77777776
Q ss_pred cc
Q 029716 126 GR 127 (189)
Q Consensus 126 a~ 127 (189)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 64
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=8.3e-15 Score=91.87 Aligned_cols=65 Identities=37% Similarity=0.727 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 58 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
|||+|||+++++++|.++|+.||.|..+.+..+ +++|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 58999999999999999999999999999875
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.2e-15 Score=121.55 Aligned_cols=127 Identities=23% Similarity=0.373 Sum_probs=94.9
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCC--CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccc
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQ--GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~ 79 (189)
++.++..++||.|+|..|..+............. ...+..+ ...........+|.|.|||+.|.+.+|+.+|+.|
T Consensus 65 ~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~---veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 65 AETEQSKFEGRILNVDPAKKRARSEEVEKGENKA---VEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHhhcCcccceecccccccccccchhcccccchh---hhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 4567788999999999998875443111100000 0000000 0011112336799999999999999999999999
Q ss_pred CCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 80 GEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 80 G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
|.|.+|.|++. .|||||.|....+|..|++.+|+.+|.|++|-|+||.++..
T Consensus 142 G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 142 GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999864 38999999999999999999999999999999999986543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.4e-15 Score=121.77 Aligned_cols=99 Identities=27% Similarity=0.509 Sum_probs=85.3
Q ss_pred cceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-
Q 029716 12 RPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 90 (189)
Q Consensus 12 r~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~- 90 (189)
.+|.|++|..+..+ ....++|||+-|+..++|++++++|++||.|++|.|.++
T Consensus 107 ~pvqvk~Ad~E~er--------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~ 160 (510)
T KOG0144|consen 107 HPVQVKYADGERER--------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP 160 (510)
T ss_pred cceeecccchhhhc--------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence 57778887777554 256789999999999999999999999999999999985
Q ss_pred ----CcEEEEEecCHHHHHHHHHHhcCce-eCC--eeEEEeeccCCCCCCCCC
Q 029716 91 ----KGCGFVQFANRENAEEALHKLNGTV-IGK--QSVRLSWGRNPANKQFRA 136 (189)
Q Consensus 91 ----~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~~a~~~~~~~~~~ 136 (189)
||||||+|.+.|-|..||+.||+.. +.| .+|.|+||.+++.+..++
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 7999999999999999999999975 555 489999999887765543
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=106.48 Aligned_cols=79 Identities=30% Similarity=0.587 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
++...-++|-|-||...++.++|+.+|++||.|-+|.|.++ +|||||.|.+..+|+.|+++|+|.+|+|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 44556678999999999999999999999999999999886 599999999999999999999999999999999
Q ss_pred eeccC
Q 029716 124 SWGRN 128 (189)
Q Consensus 124 ~~a~~ 128 (189)
.+|+-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 99874
No 30
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=8.1e-15 Score=109.18 Aligned_cols=76 Identities=34% Similarity=0.526 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
+..-++|||++|+|.++.+.|+++|++||+|++..|+.| |||+||+|.|.|+|++|++. .+-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 456789999999999999999999999999999998865 69999999999999999995 44789999999998
Q ss_pred ccC
Q 029716 126 GRN 128 (189)
Q Consensus 126 a~~ 128 (189)
|--
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.58 E-value=2.2e-15 Score=108.15 Aligned_cols=106 Identities=29% Similarity=0.509 Sum_probs=89.2
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+-||...|.||+|+|+.+.... .......+|||+||.++++|..|.++|+.||.
T Consensus 69 kiln~VkLYgrpIrv~kas~~~--------------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 69 KILNMVKLYGRPIRVNKASAHQ--------------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred HHHHHHHhcCceeEEEeccccc--------------------------ccccccccccccccCcchhHHHHHHHHHhccc
Confidence 3478889999999999988332 12345689999999999999999999999998
Q ss_pred eeEE-EEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCCC
Q 029716 82 IASV-KIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (189)
Q Consensus 82 v~~~-~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (189)
+... ++++ .++|+||.|++.|.+.+|+..+|+..++.++|+|+++..+..+.
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 7653 3433 25899999999999999999999999999999999998766544
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.7e-15 Score=119.38 Aligned_cols=99 Identities=29% Similarity=0.511 Sum_probs=89.2
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++||-..|.|++|+|.|...... .|||.||+++++..+|.++|+.||
T Consensus 54 ~~~~n~~~~~~~~~rim~s~rd~~--------------------------------~~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 54 LDTMNFDVLKGKPIRIMWSQRDPS--------------------------------LVFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred HHHcCCcccCCcEEEeehhccCCc--------------------------------eeeecCCCcccCcHHHHHHHHhhc
Confidence 578999999999999999887621 199999999999999999999999
Q ss_pred CeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 81 EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 81 ~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
+|++|++..+ ++| ||+|+++++|.+|++.+||..+.++.|.|.....+..+
T Consensus 102 ~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 102 NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9999999875 689 99999999999999999999999999999888765543
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=3.5e-14 Score=88.26 Aligned_cols=68 Identities=50% Similarity=0.894 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC----cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
+|||.|||..+++++|+++|..||.|..+.+..++ ++|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 999999999999999999999999999998874
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.57 E-value=2.6e-14 Score=107.96 Aligned_cols=75 Identities=28% Similarity=0.344 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....+|||+||++.+|+++|+++|+.||+|.+|+|.++ +++|||+|.+.++++.|+. |+|..|.++.|.|..+..
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 35689999999999999999999999999999999986 3799999999999999997 999999999999987653
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=2e-14 Score=117.10 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CcEEEEEecCH--HHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANR--ENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~--~g~afV~f~~~--~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....+|||+||++.+++++|+.+|+.||.|..|.|++. ||||||+|.+. .++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 45689999999999999999999999999999999874 69999999987 789999999999999999999999874
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=4.9e-14 Score=119.93 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=87.9
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCC-CCCCCCCCCCCCCCCCCCeEEEcCCCCC---C-------CH
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYA-SNGAPGQGPQSEGDSSNTTIFVGGLDPN---V-------TD 69 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~---~-------~~ 69 (189)
|++|||..|+|+.|+|.+|................... ...............++.+|+|.||... + ..
T Consensus 354 ~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~ 433 (509)
T TIGR01642 354 IAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIY 433 (509)
T ss_pred HHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHH
Confidence 45799999999999999987653321111000000000 0000000001112345678999999642 1 12
Q ss_pred HHHHHHhcccCCeeEEEEeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 70 EDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
++|+++|++||.|+.|.|+++ .|++||+|.+.++|++|+..|||..|+|+.|.|.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 578999999999999999763 48999999999999999999999999999999999754
No 37
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=6.5e-14 Score=107.56 Aligned_cols=85 Identities=21% Similarity=0.439 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
...+.+||||+-|+.+++|..|+..|+.||.|+.|.|+.+ +|||||+|+++.+...|.+..+|.+|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3467899999999999999999999999999999999875 6999999999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 029716 125 WGRNPANKQFR 135 (189)
Q Consensus 125 ~a~~~~~~~~~ 135 (189)
+-+....+.+.
T Consensus 177 vERgRTvkgW~ 187 (335)
T KOG0113|consen 177 VERGRTVKGWL 187 (335)
T ss_pred ecccccccccc
Confidence 98877766554
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=6.9e-14 Score=83.93 Aligned_cols=55 Identities=36% Similarity=0.667 Sum_probs=51.8
Q ss_pred HHHHhcccCCeeEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 72 LRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 72 l~~~F~~~G~v~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
|.++|++||+|.++.+..++ ++|||+|.+.++|++|++.||+..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999887 99999999999999999999999999999999986
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=3.2e-14 Score=121.41 Aligned_cols=76 Identities=24% Similarity=0.540 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+||++.+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 345689999999999999999999999999999998754 69999999999999999999999999999999986
Q ss_pred cc
Q 029716 126 GR 127 (189)
Q Consensus 126 a~ 127 (189)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=107.30 Aligned_cols=83 Identities=29% Similarity=0.600 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||++|..+++|..|...|-+||.|..|.++.| ++|+||+|+..|+|.+||..||..+|.|+.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 3456789999999999999999999999999999999764 7999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
+|+|..-+.
T Consensus 86 ~AkP~kike 94 (298)
T KOG0111|consen 86 LAKPEKIKE 94 (298)
T ss_pred ecCCccccC
Confidence 999876543
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=9.3e-14 Score=91.04 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
...+..|||.|||..+|.+++.++|.+||.|..|+|-.. +|-|||.|++..+|.+|++.|+|..++++.|.|-+-.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345678999999999999999999999999999999764 69999999999999999999999999999999988765
Q ss_pred C
Q 029716 129 P 129 (189)
Q Consensus 129 ~ 129 (189)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9.4e-14 Score=105.45 Aligned_cols=76 Identities=37% Similarity=0.834 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
..-+||+.|..+++.++|++.|.+||+|.+++|++| |||+||.|-+.++|+.||..|||.-|++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 557999999999999999999999999999999875 79999999999999999999999999999999999975
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=4.7e-14 Score=108.05 Aligned_cols=74 Identities=27% Similarity=0.580 Sum_probs=69.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
.+|||+|||..+++.+|+.+|++||+|++|+|+ |.|+||+.++...++.||..||+.+|+|..|.|+-++.+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 478999999999999999999999999999999 57999999999999999999999999999999999988744
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=8.1e-14 Score=95.54 Aligned_cols=84 Identities=27% Similarity=0.524 Sum_probs=75.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
.+..+...-.|||.++.+..++++|.+.|..||+|+.|.+..+ ||||+|+|++.+.|++|+..|||..|.+..|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3555667789999999999999999999999999999998876 5999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 029716 122 RLSWGRNPAN 131 (189)
Q Consensus 122 ~v~~a~~~~~ 131 (189)
.|.|+.-...
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999975443
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.3e-13 Score=109.53 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCcee-CCe
Q 029716 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI-GKQ 119 (189)
Q Consensus 47 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~-~g~ 119 (189)
+.-+.....|.|||+.||.++.|++|..+|++.|+|-+++|+.+ ||||||+|.+.+.|++||+.||+++| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 55556688999999999999999999999999999999999875 79999999999999999999999999 588
Q ss_pred eEEEeecc
Q 029716 120 SVRLSWGR 127 (189)
Q Consensus 120 ~l~v~~a~ 127 (189)
.|.|+.+.
T Consensus 155 ~igvc~Sv 162 (506)
T KOG0117|consen 155 LLGVCVSV 162 (506)
T ss_pred EeEEEEee
Confidence 88888765
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.3e-13 Score=111.12 Aligned_cols=77 Identities=25% Similarity=0.490 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHh-----cC-ceeCCeeE
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL-----NG-TVIGKQSV 121 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l-----~g-~~~~g~~l 121 (189)
...+|||.|||+++|+++|.++|++||+|..+.|+.+ +|.|||.|.+..+|..||+.. .+ ..|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3479999999999999999999999999999888764 599999999999999999876 33 56899999
Q ss_pred EEeeccCCC
Q 029716 122 RLSWGRNPA 130 (189)
Q Consensus 122 ~v~~a~~~~ 130 (189)
+|..|..+.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999987553
No 47
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=4.6e-13 Score=112.57 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|++||.|..|.|+++ +|||||+|.+.++|++||. |+|..|.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3445789999999999999999999999999999999864 6899999999999999997 99999999999999
Q ss_pred eccCC
Q 029716 125 WGRNP 129 (189)
Q Consensus 125 ~a~~~ 129 (189)
++...
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 87643
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=4.5e-13 Score=101.42 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....+.|.|.-||..+|+++|+.+|...|+|++|++++|| ||+||.|-++++|++|+..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45567889999999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred eccCCCC
Q 029716 125 WGRNPAN 131 (189)
Q Consensus 125 ~a~~~~~ 131 (189)
||+|...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998654
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=8.2e-13 Score=82.44 Aligned_cols=69 Identities=48% Similarity=0.877 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
+|+|++||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|++.+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988865 58999999999999999999999999999998874
No 50
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.6e-13 Score=114.55 Aligned_cols=112 Identities=21% Similarity=0.466 Sum_probs=92.8
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
++.|||..|.|+.|.|..+..+.... ...........++|+|.|||+..+..+++.+|..||
T Consensus 577 ~k~lqgtvldGH~l~lk~S~~k~~~~------------------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 577 LKALQGTVLDGHKLELKISENKPAST------------------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred HHHhcCceecCceEEEEeccCccccc------------------cccccccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 35799999999999999988322111 001112233378999999999999999999999999
Q ss_pred CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 81 ~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.|+.|+|+.. +|||||+|-+..+|.+|+++|..+-|-|++|.++||+...
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 9999999863 7999999999999999999999999999999999998643
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=97.23 Aligned_cols=76 Identities=30% Similarity=0.537 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....+|||+||+..++++.|.++|-+.|.|..+.+.++ +|||||+|.++|+|+-|++.||..+|-|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 456789999999999999999999999999999999875 59999999999999999999999999999999998
Q ss_pred cc
Q 029716 126 GR 127 (189)
Q Consensus 126 a~ 127 (189)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.4e-13 Score=105.30 Aligned_cols=87 Identities=26% Similarity=0.540 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCe
Q 029716 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQ 119 (189)
Q Consensus 46 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~ 119 (189)
.+.....++.+.|||..|++.+++++|+-+|+.||.|..|.|++++ .||||+|++.++|++|.=+|++..|+++
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 3556677889999999999999999999999999999999999874 5999999999999999999999999999
Q ss_pred eEEEeeccCCCCC
Q 029716 120 SVRLSWGRNPANK 132 (189)
Q Consensus 120 ~l~v~~a~~~~~~ 132 (189)
+|.|.|+++-+..
T Consensus 310 RIHVDFSQSVsk~ 322 (479)
T KOG0415|consen 310 RIHVDFSQSVSKV 322 (479)
T ss_pred eEEeehhhhhhhh
Confidence 9999999876653
No 53
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.3e-12 Score=80.70 Aligned_cols=65 Identities=43% Similarity=0.787 Sum_probs=59.7
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 60 v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|.+|++.+++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999999999999988765 4699999999999999999999999999998874
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=9.7e-14 Score=109.42 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=91.8
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
++.|||..|+||.|+|.....-.... . --.........-++|||..+.++++|+||+.+|+.||
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQAQ--p--------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQAQ--P--------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred HHHhccccccCccccccCCCCCcccc--h--------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 46899999999999998433221110 0 0000112334578999999999999999999999999
Q ss_pred CeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 81 EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 81 ~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
+|++|.+-+ +|||+|++|.+..+...||..||-..++|.-|+|-.+..+..
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 999999876 479999999999999999999999999999999988765544
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4e-14 Score=101.69 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
..+.-|||+|||..+||.+|.-+|++||+|+.|.+++| +||||+.|++..+...|+..|||..|.|+.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45688999999999999999999999999999999986 599999999999999999999999999999999865
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=2.4e-12 Score=99.85 Aligned_cols=74 Identities=36% Similarity=0.682 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
.++|||+|||..+++++|.++|..||.|..+.+..+ +++|||+|.+.++|..|++.+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999888765 49999999999999999999999999999999999753
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.7e-13 Score=101.66 Aligned_cols=82 Identities=26% Similarity=0.593 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCcee-C--CeeEEEee
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVI-G--KQSVRLSW 125 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~-~--g~~l~v~~ 125 (189)
..++|||+-|...-.|+|++.+|..||.|.+|.+.+ +|||+||.|.+..+|+.||..|+|... - ...|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678999999999999999999999999999999987 389999999999999999999999764 3 45899999
Q ss_pred ccCCCCCCCC
Q 029716 126 GRNPANKQFR 135 (189)
Q Consensus 126 a~~~~~~~~~ 135 (189)
|...+.+..+
T Consensus 98 ADTdkER~lR 107 (371)
T KOG0146|consen 98 ADTDKERTLR 107 (371)
T ss_pred ccchHHHHHH
Confidence 9987765544
No 58
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.4e-12 Score=99.99 Aligned_cols=81 Identities=43% Similarity=0.781 Sum_probs=73.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEeec
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWG 126 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a 126 (189)
.++.+....+|||++|...++|.+|+++|.+||+|..+.+...+++|||+|.+.++|+.|.+++ +...|+|.+|+|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4556778899999999999999999999999999999999999999999999999999988655 545579999999999
Q ss_pred cC
Q 029716 127 RN 128 (189)
Q Consensus 127 ~~ 128 (189)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 59
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=106.31 Aligned_cols=77 Identities=31% Similarity=0.582 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
+.|||+|+|+++++++|.++|+..|.|..++++.| +||+|++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999875 599999999999999999999999999999999999866
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=5.1e-12 Score=107.74 Aligned_cols=82 Identities=32% Similarity=0.705 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
..-++||||+.|+..+++.+|..+|+.||+|.+|.++..++||||.+....+|++|+.+|++..+.++.|+|.||.....
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred CC
Q 029716 132 KQ 133 (189)
Q Consensus 132 ~~ 133 (189)
+.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 43
No 61
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.35 E-value=1.6e-11 Score=100.62 Aligned_cols=82 Identities=29% Similarity=0.434 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC----CC--cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~----~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....+|||.|||.+++.++|+++|..||.|+...|.. ++ .|+||+|.+.++++.||.+ +-..|++++|.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 33455699999999999999999999999999887754 22 7999999999999999995 46778999999999
Q ss_pred ccCCCCCCC
Q 029716 126 GRNPANKQF 134 (189)
Q Consensus 126 a~~~~~~~~ 134 (189)
.++......
T Consensus 364 k~~~~~g~~ 372 (419)
T KOG0116|consen 364 KRPGFRGNG 372 (419)
T ss_pred ccccccccc
Confidence 887655433
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.3e-12 Score=102.61 Aligned_cols=82 Identities=27% Similarity=0.607 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCce-eC--CeeE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTV-IG--KQSV 121 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~-~~--g~~l 121 (189)
.+.+.-++||+-+|..++|.||+++|++||.|.+|.|++| ++||||.|.+.++|.+|+.+||+.+ |. -..|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456679999999999999999999999999999999987 4999999999999999999998876 43 4589
Q ss_pred EEeeccCCCCC
Q 029716 122 RLSWGRNPANK 132 (189)
Q Consensus 122 ~v~~a~~~~~~ 132 (189)
.|++|.....+
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99999866554
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=3.4e-12 Score=105.21 Aligned_cols=114 Identities=27% Similarity=0.469 Sum_probs=87.7
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
.|.|..+.|-+|.|......+++......... ... ...+-..|||+||..++++++|+.+|++||.|
T Consensus 239 aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~---------~k~----~~~p~~rl~vgnLHfNite~~lr~ifepfg~I 305 (549)
T KOG0147|consen 239 ALSGQRLLGVPVIVQLSEAEKNRAANASPALQ---------GKG----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI 305 (549)
T ss_pred hhcCCcccCceeEecccHHHHHHHHhcccccc---------ccc----cccchhhhhhcccccCchHHHHhhhccCcccc
Confidence 57899999999999877665544211000000 000 01112229999999999999999999999999
Q ss_pred eEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 83 ~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
..|.+.++ +||+||+|.+.++|.+|++.|||.+|.|+.|+|..-...
T Consensus 306 e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 306 ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred eeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99988875 699999999999999999999999999999998876543
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=8.2e-12 Score=94.95 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=76.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
...-++.|.|||-.||.+..+.+|...|-+||.|.+.++..| |.|+||.|++..+|+.||.+|||..|+=++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 345667899999999999999999999999999999887664 68999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 029716 123 LSWGRNPANKQ 133 (189)
Q Consensus 123 v~~a~~~~~~~ 133 (189)
|.+.+++...+
T Consensus 359 VQLKRPkdanR 369 (371)
T KOG0146|consen 359 VQLKRPKDANR 369 (371)
T ss_pred hhhcCccccCC
Confidence 99998876543
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=9e-11 Score=94.75 Aligned_cols=78 Identities=22% Similarity=0.437 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
...+.+||.|||+++.|.+|+++|.. .|+|..|.+..| ++||.|+|+++|.+++|++.||.+++.|+.|+|+..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34456999999999999999999985 789999998765 699999999999999999999999999999999887
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
....
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 6533
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=6.4e-12 Score=99.30 Aligned_cols=71 Identities=25% Similarity=0.608 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
-|+|||+.+.+++.|+.|+..|.+||.|++|.+..| |+||||+|+-.|.|+.|++.|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 489999999999999999999999999999988654 79999999999999999999999999999999874
No 67
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=3.6e-11 Score=89.48 Aligned_cols=79 Identities=25% Similarity=0.505 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhcccCCeeEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~----~F~~~G~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
++.||||.||++.+..++|++ +|++||+|.+|...+ -+|-|||.|.+.+.|-.|++.|+|..+-|+.++|.||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 344999999999999998887 999999999998764 3699999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+....-
T Consensus 88 ~s~sdi 93 (221)
T KOG4206|consen 88 KSDSDI 93 (221)
T ss_pred cCccch
Confidence 977653
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.24 E-value=7.3e-11 Score=93.52 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=87.1
Q ss_pred ceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE
Q 029716 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 86 (189)
Q Consensus 7 ~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~ 86 (189)
..|.||.|.+..|.++.... .........+|||++||.++++++|++.|++||.|..+.
T Consensus 70 h~~dgr~ve~k~av~r~~~~---------------------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 70 HKLDGRSVEPKRAVSREDQT---------------------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred cccCCccccceeccCccccc---------------------ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 45678888888887775542 111122577999999999999999999999999998888
Q ss_pred EeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCCCC
Q 029716 87 IPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 134 (189)
Q Consensus 87 ~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 134 (189)
++.+ ++|+||.|++++++++++. ..-+.|+++.+.|+.|.++.....
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred EeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 8764 6999999999999999988 788899999999999998776543
No 69
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=8.8e-11 Score=73.59 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=48.5
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeC--------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 69 DEDLRQPFS----QYGEIASVK-IPV--------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 69 ~~~l~~~F~----~~G~v~~~~-~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
+++|+++|+ .||.|.++. +.. .+|++||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999884 322 26899999999999999999999999999999863
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=1.4e-10 Score=86.38 Aligned_cols=126 Identities=20% Similarity=0.281 Sum_probs=96.0
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCC------------CC---CC--------CCCCCCCCCCCCCCCeE
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY------------AS---NG--------APGQGPQSEGDSSNTTI 58 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~------------~~---~~--------~~~~~~~~~~~~~~~~l 58 (189)
.+|+|+.+.|++|+|.+|..+++...+.+.....+. .+ .+ ..+........++...+
T Consensus 70 r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~il 149 (221)
T KOG4206|consen 70 RALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNIL 149 (221)
T ss_pred HHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEE
Confidence 579999999999999999988776543221100000 00 00 00000013446778899
Q ss_pred EEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeecc
Q 029716 59 FVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 127 (189)
Q Consensus 59 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~ 127 (189)
|+.|||.+++.+.|..+|.+|...++++++.. ++.|||+|.+...|..|...|.+..|. ...++|.+++
T Consensus 150 f~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 150 FLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999999999999998875 589999999999999999999999986 8889998886
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=94.20 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.....|+|||.|||.++||..|++-|..||.|+.++|+- .+..+.|.|.++++|++|+..|++..++|+.|+|++.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 345678999999999999999999999999999998853 3456699999999999999999999999999999874
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.6e-10 Score=97.97 Aligned_cols=72 Identities=40% Similarity=0.615 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~---------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
++|||.||+++++.++|..+|...|.|+.+.|...+ ||+||+|.+.++|+.|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887532 99999999999999999999999999999999999
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.5e-10 Score=93.15 Aligned_cols=110 Identities=28% Similarity=0.523 Sum_probs=94.7
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|++|||..+.+++|.|.....+..+..... . ....-+.++|.+++.+++++.|.++|..+|
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~~~------------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g 192 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAPLG------------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYG 192 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccccc------------------c-hhhhhhhhheeccccccchHHHHHhhcccC
Confidence 568999999999999999888766531111 1 344567889999999999999999999999
Q ss_pred CeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 81 ~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.|..+.++.+ ++|+||.|.+.++|..|++.|++..+.+..+.|.-+..+
T Consensus 193 ~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 193 SITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred cceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 9999998863 689999999999999999999999999999999888763
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.05 E-value=4.8e-09 Score=83.37 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCCCCCCeEEEcCCCC--CCCHHHHHHHhcccCCeeEEEEeCCCc-EEEEEecCHHHHHHHHHHhcCcee--CCeeEEE
Q 029716 49 SEGDSSNTTIFVGGLDP--NVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVI--GKQSVRL 123 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~--~~~~~~l~~~F~~~G~v~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 123 (189)
.+....+..|.+.=|.+ .+|.+.|..+....|+|.+|.|.+..+ -|+|+|++.+.|++|.++|||..| +-+.|+|
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34445556665554444 589999999999999999999987666 499999999999999999999998 3468999
Q ss_pred eeccCCCCCCC
Q 029716 124 SWGRNPANKQF 134 (189)
Q Consensus 124 ~~a~~~~~~~~ 134 (189)
+||++.+.+..
T Consensus 194 eyAkP~rlnV~ 204 (494)
T KOG1456|consen 194 EYAKPTRLNVQ 204 (494)
T ss_pred EecCcceeeee
Confidence 99998765443
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=3.7e-10 Score=84.65 Aligned_cols=74 Identities=24% Similarity=0.570 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
..+||++|++.+.+.+|+.+|..||.+..+.+. .+|+||+|.+..+|..|+..||+++|.+..+.|++++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 468999999999999999999999999998876 48899999999999999999999999999999999986443
No 76
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=1.5e-09 Score=90.39 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
......|||.+|...+...+|+.+|++||+|+-.+|+.+ +.|+||++.+.++|.+||..|+.++|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345678999999999999999999999999998888764 57999999999999999999999999999999999
Q ss_pred ccCCC
Q 029716 126 GRNPA 130 (189)
Q Consensus 126 a~~~~ 130 (189)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 98544
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.01 E-value=3.4e-09 Score=78.89 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-C------CcEEEEEecCHHHHHHHHHHhcCceeC---CeeE
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-G------KGCGFVQFANRENAEEALHKLNGTVIG---KQSV 121 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-~------~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 121 (189)
....+||||.+||.++...+|..+|..|-..+.+.+.. + +.+|||+|.+..+|.+|...|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44578999999999999999999999986555444422 1 369999999999999999999999995 7789
Q ss_pred EEeeccCCCCCC
Q 029716 122 RLSWGRNPANKQ 133 (189)
Q Consensus 122 ~v~~a~~~~~~~ 133 (189)
+|++|+......
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 999999766544
No 78
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.00 E-value=2.6e-09 Score=85.69 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=92.1
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCC--------CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHH
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYAS--------NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDL 72 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 72 (189)
++.|+|..|.|++|+|.+++...-........+++-... ...+.........+++.+|++.|+|.+++|++|
T Consensus 352 ~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~l 431 (492)
T KOG1190|consen 352 MEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDL 431 (492)
T ss_pred HHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHH
Confidence 467999999999999998886543321111111111111 111112223334577889999999999999999
Q ss_pred HHHhcccCCeeE-EEE-eCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-eEEEeeccC
Q 029716 73 RQPFSQYGEIAS-VKI-PVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRN 128 (189)
Q Consensus 73 ~~~F~~~G~v~~-~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~~ 128 (189)
+..|..-|...+ .++ .+++.++++.+++.|+|..|+..++.+.++.. .|+|.|++.
T Consensus 432 k~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred HHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999886544 443 45778999999999999999999999999654 899999885
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=5e-08 Score=70.80 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=89.3
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|..-||..++|..|+|+++....... ....+..+.....+.......++...+..+|.|.+||.+-+|++|+++..+-|
T Consensus 62 iygRdGYdydg~rLRVEfprggr~s~-~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG 140 (241)
T KOG0105|consen 62 IYGRDGYDYDGCRLRVEFPRGGRSSS-DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG 140 (241)
T ss_pred hhcccccccCcceEEEEeccCCCccc-ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC
Confidence 34568999999999999988765321 22222222222233333444566777889999999999999999999999999
Q ss_pred CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 81 ~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
.|+...+.++ +++.|+|...|+.+-|+..|+...+.
T Consensus 141 dvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 141 DVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred Ceeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 9999998876 79999999999999999999988774
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.6e-09 Score=81.24 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=87.8
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCC-CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccc
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~ 79 (189)
|..+|+..|++-.+.|+++....... +......... ...........+.++|.+++..+.+.+|.++|.++
T Consensus 52 v~~l~~~~l~~e~~vve~~r~~~~~~--------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~ 123 (216)
T KOG0106|consen 52 VHDLDGKELCGERLVVEHARGKRRGR--------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA 123 (216)
T ss_pred cchhcCceecceeeeeeccccccccc--------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc
Confidence 46789999999889999988642111 0000000000 12223345678899999999999999999999999
Q ss_pred CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 80 GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 80 G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
|.+....+ ..+++||+|++.+++.+|+..|++..+.++.|++...-
T Consensus 124 g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 124 GEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred CCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 99955444 46899999999999999999999999999999995443
No 81
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=3.4e-09 Score=77.96 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+.......+||..+|..+.+.++..+|.+| |.|..+++.++ ++||||+|++.+.|+-|-+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556788999999999999999999998 67777787653 69999999999999999999999999999999
Q ss_pred EeeccCC
Q 029716 123 LSWGRNP 129 (189)
Q Consensus 123 v~~a~~~ 129 (189)
|.+=.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987665
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=1e-09 Score=87.05 Aligned_cols=77 Identities=30% Similarity=0.522 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
..++|||++|+++++++.|++.|.+||+|.+|.++++ ++|+||+|++.+.+.+++. ..-+.|+++.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6799999999999999999999999999999999875 5999999999999888887 45578999999998887
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7664
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.2e-09 Score=90.61 Aligned_cols=72 Identities=31% Similarity=0.482 Sum_probs=66.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.+.+..+|+|-|||..+++++|+.+|+.||+|+.|+..+. ++..||+|.|..+|++|+++|++.+|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3566789999999999999999999999999999877654 58999999999999999999999999999888
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.89 E-value=5.2e-09 Score=89.04 Aligned_cols=81 Identities=40% Similarity=0.800 Sum_probs=74.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGK 118 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g 118 (189)
....++.++.|||+||++.++++.|...|..||.|..++|+.. +.|+||-|-+..+|++|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3444678899999999999999999999999999999998752 5799999999999999999999999999
Q ss_pred eeEEEeeccC
Q 029716 119 QSVRLSWGRN 128 (189)
Q Consensus 119 ~~l~v~~a~~ 128 (189)
..+++-|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999964
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1.9e-08 Score=77.07 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|+|.||+..+++++|+++|+.|+.++.+-+..+ .+.|-|.|...++|++|++.+++..++|+.+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 4445588999999999999999999999998888877765 48999999999999999999999999999999888
Q ss_pred ccCCCC
Q 029716 126 GRNPAN 131 (189)
Q Consensus 126 a~~~~~ 131 (189)
..++..
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 766554
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=3.4e-08 Score=82.45 Aligned_cols=125 Identities=19% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCC--CC-CCH-------H
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLD--PN-VTD-------E 70 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~-~~~-------~ 70 (189)
|+.|||+.++++.|.|..|............ .+..................+..|.+.|+= .+ .++ +
T Consensus 348 ~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlE 424 (500)
T KOG0120|consen 348 IAGLNGMQLGDKKLVVQRAIVGASNANVNFN---ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILE 424 (500)
T ss_pred hcccchhhhcCceeEeehhhccchhccccCC---ccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHH
Confidence 4689999999999999998876544321111 000001111111112233344455555441 11 122 3
Q ss_pred HHHHHhcccCCeeEEEEeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 71 DLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 71 ~l~~~F~~~G~v~~~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
+++..+++||.|..|.+.++ -|..||+|.+.++|++|.++|+|.++.++.|.+.|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 56667788999999999875 36789999999999999999999999999998887643
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.74 E-value=7.7e-08 Score=75.87 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=68.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC-----CcEEEEEecCHHHHHHHHHHhcCc
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG-----KGCGFVQFANRENAEEALHKLNGT 114 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~ 114 (189)
.......++.|||.|||.++|.+++.++|++||-|.. |++-++ ||=|++.|-..++++.|++.|++.
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcc
Confidence 3344556778999999999999999999999997753 445443 588999999999999999999999
Q ss_pred eeCCeeEEEeecc
Q 029716 115 VIGKQSVRLSWGR 127 (189)
Q Consensus 115 ~~~g~~l~v~~a~ 127 (189)
.|.|+.|+|+.|+
T Consensus 207 ~~rg~~~rVerAk 219 (382)
T KOG1548|consen 207 ELRGKKLRVERAK 219 (382)
T ss_pred cccCcEEEEehhh
Confidence 9999999999986
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.71 E-value=1.1e-07 Score=60.32 Aligned_cols=70 Identities=26% Similarity=0.418 Sum_probs=49.9
Q ss_pred CeEEEcCCCCCCCHH----HHHHHhcccC-CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 56 TTIFVGGLDPNVTDE----DLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~----~l~~~F~~~G-~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
..|+|.|||.+.+.. .|++++..+| .|..|. .+.|+|.|.+.+.|++|++.|+|..+-|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 578999999998764 5778888886 676662 589999999999999999999999999999999998543
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.69 E-value=1.2e-07 Score=74.76 Aligned_cols=128 Identities=14% Similarity=0.220 Sum_probs=87.7
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCC-----------CCCCCCCCCCCCCCCCCCCCCeEEEcCCCC----
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG-----------GYASNGAPGQGPQSEGDSSNTTIFVGGLDP---- 65 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---- 65 (189)
|+.|++..|.|+.|+|+.|.-...-.......... ......-.+...........++|.+.|+=.
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~ 279 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDF 279 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHh
Confidence 35689999999999999988543221100000000 000011112223444566778999998832
Q ss_pred CCC-------HHHHHHHhcccCCeeEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 66 NVT-------DEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 66 ~~~-------~~~l~~~F~~~G~v~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
..+ .++|++-.++||.|.+|.|. ...|.+-|.|.+.+.|..||+.|+|..|+|+.|.......
T Consensus 280 ~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 280 EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 122 35677889999999999886 3469999999999999999999999999999998877653
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.68 E-value=1.7e-07 Score=75.51 Aligned_cols=81 Identities=25% Similarity=0.414 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 55 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 55 ~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
++.|.|.||.+. +|.+.|..+|..||+|.+|+|..+| .-|+|.|.+...|+.|++.|+|..+.|++|+|.+++-....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 678899999876 8999999999999999999998765 67999999999999999999999999999999999876554
Q ss_pred CCC
Q 029716 133 QFR 135 (189)
Q Consensus 133 ~~~ 135 (189)
.++
T Consensus 377 lp~ 379 (492)
T KOG1190|consen 377 LPR 379 (492)
T ss_pred CCC
Confidence 443
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=4.3e-08 Score=74.33 Aligned_cols=79 Identities=27% Similarity=0.499 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
-.....+||++.|.-+++++.|-..|.+|-.....+++++ ++|+||-|.+.+++..|++.|+|+.++.+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3556789999999999999999999999987776666664 6999999999999999999999999999998887
Q ss_pred eccCC
Q 029716 125 WGRNP 129 (189)
Q Consensus 125 ~a~~~ 129 (189)
-...+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 55443
No 92
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=7.8e-08 Score=73.66 Aligned_cols=79 Identities=28% Similarity=0.483 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
........+||+|+...++.+++..+|+.||.|..+.+..+ ++|+||+|.+.+.++.|+. |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 45667889999999999999999999999999987777654 5899999999999999999 9999999999999
Q ss_pred eeccCC
Q 029716 124 SWGRNP 129 (189)
Q Consensus 124 ~~a~~~ 129 (189)
.+.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998865
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.8e-08 Score=74.89 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC----cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
.....+|||.|+...++|+-|.++|-+-|.|.++.|..++ .||||.|.++.+..-|++-+||..+.+..|.|.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3467899999999999999999999999999999987653 499999999999999999999999988888777654
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.56 E-value=2.3e-07 Score=62.59 Aligned_cols=69 Identities=35% Similarity=0.568 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCc-----eeCCeeEEEe
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-----VIGKQSVRLS 124 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~~~g~~l~v~ 124 (189)
+.|.|.+++..++.++|+++|+.||.|..|.+......|+|.|.+.++|+.|++.+.-. .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999999999988889999999999999999877544 4555555544
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.56 E-value=1.5e-06 Score=69.48 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
...+.+.+.|-+|... ++.+.|..+|..||.|.+|++++.+ +-|+|++.|..+.++|+..||+..+-|.+|.|++++.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 3445788899999887 6778899999999999999999875 8999999999999999999999999999999999985
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
..
T Consensus 363 ~~ 364 (494)
T KOG1456|consen 363 NF 364 (494)
T ss_pred cc
Confidence 44
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.48 E-value=8e-07 Score=73.17 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
......|-+.+|||++|+++|.+||+.+ .|..+.+.+. .+-|||+|.++|++++|++ .+...+..+-|.|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 3445677888999999999999999999 6777777654 5899999999999999999 67788888889988775
Q ss_pred CCC
Q 029716 128 NPA 130 (189)
Q Consensus 128 ~~~ 130 (189)
...
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 433
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.45 E-value=2e-07 Score=69.62 Aligned_cols=64 Identities=30% Similarity=0.579 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CcEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
.+.+|||.||..+|+|++|+.+|+.|.....++|... ...||++|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3568999999999999999999999987777776543 358999999999999999999998773
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=2e-06 Score=56.96 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeC----CeeEEE
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG----KQSVRL 123 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 123 (189)
+||-|.|||...|.++|.+++... |....+.++.| .|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999998888763 45555555433 599999999999999999999999874 567788
Q ss_pred eeccCCC
Q 029716 124 SWGRNPA 130 (189)
Q Consensus 124 ~~a~~~~ 130 (189)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987543
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=7.1e-07 Score=74.71 Aligned_cols=84 Identities=21% Similarity=0.463 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......+++||++||..+++.++.++...||.+....+.. +++|||.+|.+......|+..|||+.+.++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 3445678999999999999999999999999998887765 3799999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
..|.......
T Consensus 364 q~A~~g~~~~ 373 (500)
T KOG0120|consen 364 QRAIVGASNA 373 (500)
T ss_pred ehhhccchhc
Confidence 9998655443
No 100
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.33 E-value=3.9e-06 Score=66.78 Aligned_cols=83 Identities=27% Similarity=0.341 Sum_probs=70.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeC------CCcEEEEEecCHHHHHHHHHHhcCc
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPV------GKGCGFVQFANRENAEEALHKLNGT 114 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~ 114 (189)
........+|||-+|+..+++++|.++|.+++.|.. |.|-+ .|+-|.|.|+|...|+.||..++++
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 334566789999999999999999999999987753 22222 3689999999999999999999999
Q ss_pred eeCCeeEEEeeccCCCC
Q 029716 115 VIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 115 ~~~g~~l~v~~a~~~~~ 131 (189)
.+++..|+|.+|..+..
T Consensus 140 df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCCCchhhhhhhccC
Confidence 99999999999987664
No 101
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.31 E-value=2.5e-06 Score=71.14 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=52.3
Q ss_pred HHHHHHhcccCCeeEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 70 EDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+++.+.+.+||+|..|.+.++. |+.||.|.+.+.|..|+.+|||..|.|+.|++.|-.
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 4667777999999999988765 999999999999999999999999999999998854
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.29 E-value=4.3e-06 Score=68.96 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.....|-+.+||+.||+++|.+||+..--|.. +.++.+ .+.|||.|++.+.|++|+. -|...|.-+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 46678999999999999999999998743333 223322 4899999999999999998 4667788888888765
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.21 E-value=4.2e-06 Score=49.22 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=43.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~ 108 (189)
+.|-|.+.+.+..+. +..+|..||+|..+.+.....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 567788888776644 5568999999999998877889999999999999985
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.10 E-value=1.7e-05 Score=52.85 Aligned_cols=72 Identities=28% Similarity=0.374 Sum_probs=53.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE-------------EeCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ- 119 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~-------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 119 (189)
..+.|.|-+.|+.. ...+.+.|++||+|.+.. +.....+-.|+|++..+|.+||. .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45668888888884 466778899999998875 45567899999999999999999 799999875
Q ss_pred eEEEeecc
Q 029716 120 SVRLSWGR 127 (189)
Q Consensus 120 ~l~v~~a~ 127 (189)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55677764
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.07 E-value=8.8e-06 Score=66.15 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=55.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------------------CcEEEEEecCHHHHHHHHHHh
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANRENAEEALHKL 111 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-------------------~g~afV~f~~~~~a~~A~~~l 111 (189)
......+|.+.|||.+-.-+.|.++|..+|.|+.|+|... +-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999888999999999999999998752 468999999999999999976
Q ss_pred cC
Q 029716 112 NG 113 (189)
Q Consensus 112 ~g 113 (189)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 53
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.03 E-value=1.3e-05 Score=63.44 Aligned_cols=74 Identities=20% Similarity=0.559 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCCCHHH------HHHHhcccCCeeEEEEeCCC-------cE--EEEEecCHHHHHHHHHHhcCceeCC
Q 029716 54 SNTTIFVGGLDPNVTDED------LRQPFSQYGEIASVKIPVGK-------GC--GFVQFANRENAEEALHKLNGTVIGK 118 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~------l~~~F~~~G~v~~~~~~~~~-------g~--afV~f~~~~~a~~A~~~l~g~~~~g 118 (189)
..+-+||-+|++.+..++ -.++|.+||.|.+|.|.+.. +. .+|+|.+.|+|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456789999999876654 26899999999999887531 32 3999999999999999999999999
Q ss_pred eeEEEeecc
Q 029716 119 QSVRLSWGR 127 (189)
Q Consensus 119 ~~l~v~~a~ 127 (189)
+.|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998875
No 107
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.94 E-value=3.2e-05 Score=61.57 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
..++||+||-|.+|+++|.+.....| .+.++++.. +||||+|...+..+.++.++.|..++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45789999999999999999888766 455555433 4799999999999999999999999999875444
No 108
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.84 E-value=2.7e-05 Score=65.78 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCcee---CCeeEE
Q 029716 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI---GKQSVR 122 (189)
Q Consensus 47 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 122 (189)
..+.....++.|||.||-.-+|.-+|+.++.. .|.|.++-|.+-|..|||.|.+.++|.+.+.+|||... +.+.|.
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34456677899999999999999999999995 66777764444478999999999999999999999986 678899
Q ss_pred EeeccCCCC
Q 029716 123 LSWGRNPAN 131 (189)
Q Consensus 123 v~~a~~~~~ 131 (189)
+.|+.....
T Consensus 516 adf~~~del 524 (718)
T KOG2416|consen 516 ADFVRADEL 524 (718)
T ss_pred eeecchhHH
Confidence 999875443
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.74 E-value=4.2e-05 Score=60.57 Aligned_cols=78 Identities=35% Similarity=0.582 Sum_probs=67.8
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 54 SNTTIF-VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 54 ~~~~l~-v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
...++| |++|+..+++++|+.+|..+|.|..+++..+ ++|++|+|.+...+..++.. +...+.++.+.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 9999999999999999999999999988753 58999999999999999987 888899999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
.+....
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 876543
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=9.2e-05 Score=65.33 Aligned_cols=82 Identities=22% Similarity=0.467 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~ 128 (189)
.....+.+++++|..++....|...|..||.|..|.+-....|++|.|++...++.|++.|.+..|++ ++|.|.||.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 45678899999999999999999999999999999988878999999999999999999999999964 6899999987
Q ss_pred CCCC
Q 029716 129 PANK 132 (189)
Q Consensus 129 ~~~~ 132 (189)
....
T Consensus 531 ~~~~ 534 (975)
T KOG0112|consen 531 PGAT 534 (975)
T ss_pred CCCC
Confidence 6543
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.67 E-value=0.00025 Score=50.16 Aligned_cols=75 Identities=24% Similarity=0.412 Sum_probs=53.6
Q ss_pred CCCCCeEEEcCCC------CCCCH---HHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 52 DSSNTTIFVGGLD------PNVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 52 ~~~~~~l~v~nl~------~~~~~---~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
-++..||.|.=+. ..+.+ .+|.+.|+.||++.-+++.- +.-.|+|.+-++|.+|+. ++|.++.|+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 4456677776444 12333 36788899999999888875 477899999999999999 999999999999
Q ss_pred EeeccCC
Q 029716 123 LSWGRNP 129 (189)
Q Consensus 123 v~~a~~~ 129 (189)
|++..+.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9987653
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.64 E-value=0.00024 Score=61.26 Aligned_cols=71 Identities=27% Similarity=0.346 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCee-EEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.+.|-+.|+|++++.+||.+||..|-.+- +|++..+ .|.|.|.|++.++|.+|...|+++.|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999995432 3444332 48999999999999999999999999999988764
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.61 E-value=3.6e-05 Score=58.75 Aligned_cols=67 Identities=28% Similarity=0.493 Sum_probs=58.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----------------C--cEEEEEecCHHHHHHHHHHhcCce
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----------------K--GCGFVQFANRENAEEALHKLNGTV 115 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----------------~--g~afV~f~~~~~a~~A~~~l~g~~ 115 (189)
..-.||+++||+.++...|+++|+.||.|-.|.+... . .-+.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988642 1 247899999999999999999999
Q ss_pred eCCee
Q 029716 116 IGKQS 120 (189)
Q Consensus 116 ~~g~~ 120 (189)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98874
No 114
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=0.00019 Score=54.86 Aligned_cols=80 Identities=25% Similarity=0.421 Sum_probs=65.1
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
+|++....+|.++|.+|.. ..|||.||+..++.+.|++.|+.||.|
T Consensus 13 eLd~~~~~~~~lr~rfa~~----------------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 13 ELDGRFPKGRSLRVRFAMH----------------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred hcCCCCCCCCceEEEeecc----------------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 5778888888888887754 457999999999999999999999999
Q ss_pred eEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCcee
Q 029716 83 ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI 116 (189)
Q Consensus 83 ~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~ 116 (189)
....+..| .+-++|+|...-.|.+|+..++-.-|
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 87666543 36789999999999999987643333
No 115
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00045 Score=58.31 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeC-Cee
Q 029716 53 SSNTTIFVGGLDPNVT------DEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQS 120 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~------~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~ 120 (189)
.-...|+|.|+|---. ...|..+|+++|+|..+.++.+ +||.|++|.+..+|+.|++.|||+.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4467888999986522 2357889999999999888753 699999999999999999999999985 556
Q ss_pred EEEee
Q 029716 121 VRLSW 125 (189)
Q Consensus 121 l~v~~ 125 (189)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 116
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.47 E-value=5.6e-05 Score=57.78 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=47.2
Q ss_pred HHHHHhc-ccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 71 DLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 71 ~l~~~F~-~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
+|...|+ +||+|+++.|..+ .|-++|.|..+++|++|++.||+..+.|++|.+.+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 4444555 7899999876553 478899999999999999999999999999998875
No 117
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.30 E-value=0.00077 Score=52.66 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=49.5
Q ss_pred HHHHHHhcccCCeeEEEEeCC------C-cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 70 EDLRQPFSQYGEIASVKIPVG------K-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~------~-g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+++.+.+++||.|..|.|... . ---||+|+..++|.+|+-.|||..|+|+.+..+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999998877542 2 246999999999999999999999999999988865
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.24 E-value=0.00037 Score=56.41 Aligned_cols=72 Identities=21% Similarity=0.437 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe-e
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS-W 125 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~-~ 125 (189)
..|.|.||.++++.+++..+|...|+|.++.|... .-.|||.|.|...+..|.. |.++.+-++.|.|- +
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38999999999999999999999999999988652 3689999999999998887 77777766655544 4
Q ss_pred ccC
Q 029716 126 GRN 128 (189)
Q Consensus 126 a~~ 128 (189)
...
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 443
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.20 E-value=0.0011 Score=53.64 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeE--EEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IAS--VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~-v~~--~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
..+..+|-+.+||++.+.++|.+||..|.. |.. +.+..+ .|-|||+|.+.|+|..|....+.+....+.|.|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 344678999999999999999999999863 333 444432 489999999999999999988888888898888
Q ss_pred eeccC
Q 029716 124 SWGRN 128 (189)
Q Consensus 124 ~~a~~ 128 (189)
--+..
T Consensus 357 fp~S~ 361 (508)
T KOG1365|consen 357 FPCSV 361 (508)
T ss_pred eeccH
Confidence 76653
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.20 E-value=0.0027 Score=38.33 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccc---CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANRENAEEALHKL 111 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l 111 (189)
..+|+|.++. +++.++++.+|..| .....|.++-| .-|-|.|.|.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4689999986 57778899999988 24567777766 46678899999999999865
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.12 E-value=0.0004 Score=56.75 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCce-eCCeeEEEeeccCCCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV-IGKQSVRLSWGRNPAN 131 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l~v~~a~~~~~ 131 (189)
+++|++||.+.++..+|+.+|..----..-.++...+|+||++.+..-|.+|++.++++. +.|+++.|...-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999864211112233345999999999999999999999975 7899999998876544
No 122
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.10 E-value=0.0021 Score=47.69 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=49.3
Q ss_pred CHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEeeccCCC
Q 029716 68 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 68 ~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~~~~ 130 (189)
..+.|+++|..++.+..+...++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999999888887888999999999999999999 999999999999996443
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0028 Score=53.09 Aligned_cols=60 Identities=27% Similarity=0.529 Sum_probs=47.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCc---EEEEEecCHHHHHHHHHHhc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~---------~~g---~afV~f~~~~~a~~A~~~l~ 112 (189)
..-.++|||++||++++|+.|...|..||.+. +++.. .+| |+|+.|+++.++..-+.+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 44578999999999999999999999999763 33331 256 99999999988887766543
No 124
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.04 E-value=0.0013 Score=55.45 Aligned_cols=73 Identities=10% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~--~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~ 124 (189)
.....|.|.|.-||+.+-.++++.+|.. +-++.+|.+-.+.++ ||+|++.++|+.|.+.|.- ++|.|+.|..+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3455688899999999999999999986 778888887665444 8999999999999876643 34666655433
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0024 Score=53.52 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=54.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHH
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 110 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~ 110 (189)
.....+.+|||||+||.-++.++|-.+|+ .||.|+.+-|..| +|-+-|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34456788999999999999999999999 6999999888776 68999999999999999873
No 126
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.86 E-value=0.00093 Score=55.32 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=64.6
Q ss_pred CCCCCCCeEEEcCCCCCC-CHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 50 EGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~-~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
......+.|-+.-.+... +.++|..+|.+||+|..|.+...--.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344455666666677775 458999999999999999887666789999999999988877 799999999999999876
No 127
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.64 E-value=0.016 Score=40.78 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=57.5
Q ss_pred CCCCCCeEEEcCCCCCCC----HHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 51 GDSSNTTIFVGGLDPNVT----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~----~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
..++-.+|.|.=|..++. -..+...++.||+|.++.+ ..+.-|.|.|.|..+|-+|+.+++. ..-|..+.+.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 345566788876665543 3455666788999999865 4567899999999999999999886 667778888886
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 5
No 128
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.59 E-value=0.021 Score=36.50 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=42.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 112 (189)
...+..+|. +|......||.++|+.||.|. |.++. ..-|||.....+.|..|+..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeecHHHHHHHHHHhc
Confidence 345667776 999999999999999999874 34443 3789999999999999988775
No 129
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.49 E-value=0.0017 Score=57.32 Aligned_cols=76 Identities=24% Similarity=0.255 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCcee--CCeeEEEeeccCCCCCC
Q 029716 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQ 133 (189)
Q Consensus 58 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~ 133 (189)
.++.|.+-..+...|..+|..||.|.+....++-..|.|+|.+.+.|..|+++|+|+++ -|-+.+|.||+.-.-..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 34444555677888999999999999999989889999999999999999999999986 57789999998765443
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.0035 Score=55.46 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....|+|.|+|+..|.++|+.++..+|.+.++.++.. +|.++|.|.+..++.+++...+...+..+.+.|..+.+
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3568899999999999999999999999999876653 68999999999999999988888888888888888766
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 43
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.025 Score=44.63 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-eEEEeeccCCC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRNPA 130 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~~~~ 130 (189)
..=|-|-++++.-. .-|..+|++||+|++.....+-.+-+|.|.+..+|++||. .||+.|++. .|-|+-+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 34455556666544 4567789999999998777555799999999999999999 699999876 45566655443
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.27 E-value=0.048 Score=44.46 Aligned_cols=68 Identities=31% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccc----CCeeEEEE-eC--C--CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQY----GEIASVKI-PV--G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~----G~v~~~~~-~~--~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.-.|-+.+||+++++.++.+||.+- +....|-+ .+ + .|-|||.|..+++|+.||.+ |...|+-|.|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 4456778999999999999999632 23333333 22 2 48999999999999999973 444444444444
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.23 E-value=0.0049 Score=53.53 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=61.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeC---C--CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV---G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-~~~~~---~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
........+|||..||..+++.++.++|...-.|++ |.|.. + ++.|||.|..++++..|...-+...++.+.|+
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 344566789999999999999999999998777776 55543 2 47999999998888888876666667777888
Q ss_pred Eee
Q 029716 123 LSW 125 (189)
Q Consensus 123 v~~ 125 (189)
|.-
T Consensus 508 v~s 510 (944)
T KOG4307|consen 508 VDS 510 (944)
T ss_pred eec
Confidence 864
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.18 E-value=0.08 Score=35.93 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=47.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCCC----cEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
...+.+...|..++.++|..+.+.+- .|..++|+++. -.+++.|.+.++|..-.+.+||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444544555566677776666654 67788888763 37899999999999999999999885
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.00 E-value=0.016 Score=42.70 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=50.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-cCCe---eEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCC--
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGK-- 118 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v---~~~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 118 (189)
....+|.|.+||+.+|++++.+.++. ++.- ..+.-..+ ..-|+|.|.+.+++..-...++|+.|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35579999999999999999987776 5544 33331111 2579999999999999999999988732
Q ss_pred ---eeEEEeeccC
Q 029716 119 ---QSVRLSWGRN 128 (189)
Q Consensus 119 ---~~l~v~~a~~ 128 (189)
....|++|--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2456777753
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0022 Score=56.93 Aligned_cols=79 Identities=25% Similarity=0.511 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....+.+||++||+..+++.+|+..|..+|.|.+|.|... ..++||.|.+...+-.|+..+.+..|....+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34556789999999999999999999999999999988653 3699999999999999999999998876667777
Q ss_pred eccC
Q 029716 125 WGRN 128 (189)
Q Consensus 125 ~a~~ 128 (189)
+..+
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 7654
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.87 E-value=0.0069 Score=52.25 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 46 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.+.....+...++||+|+...+..+-+..+...+|-|..+.... |+|.+|.++..+.+|+..++-..+++..+.+..
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34445566788999999999999999999999999998876553 999999999999999999998889888776665
Q ss_pred c
Q 029716 126 G 126 (189)
Q Consensus 126 a 126 (189)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.85 E-value=0.0029 Score=50.39 Aligned_cols=75 Identities=21% Similarity=0.453 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHH---HHHhcccCCeeEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 54 SNTTIFVGGLDPNVTDEDL---RQPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l---~~~F~~~G~v~~~~~~~~~---------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
..+.+||-+|+..+.++.+ .+.|.+||.|.++.+.++. .-++|+|...++|..||...+|..++++.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3467788899988765544 4578888999998876632 237999999999999999999999999888
Q ss_pred EEeeccC
Q 029716 122 RLSWGRN 128 (189)
Q Consensus 122 ~v~~a~~ 128 (189)
+..++.+
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7777654
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.00045 Score=60.80 Aligned_cols=64 Identities=31% Similarity=0.474 Sum_probs=51.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe--C----CCcEEEEEecCHHHHHHHHHHhcCcee
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--V----GKGCGFVQFANRENAEEALHKLNGTVI 116 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~--~----~~g~afV~f~~~~~a~~A~~~l~g~~~ 116 (189)
...+++||.||+..+.+.+|...|..++.+..+.+. . -+|.|+|+|.+.+++.+||.......+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 345688999999999999999999999877666543 2 269999999999999999975544433
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.53 E-value=0.098 Score=32.74 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhcccCC-----eeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 65 PNVTDEDLRQPFSQYGE-----IASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 65 ~~~~~~~l~~~F~~~G~-----v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
..++..+|..++..-+. |-.+++. ..|+||+-.. +.|+.+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34888888888887654 4456655 4688888865 4789999999999999999999875
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.37 E-value=0.00092 Score=54.73 Aligned_cols=99 Identities=19% Similarity=0.369 Sum_probs=76.7
Q ss_pred CccCC-ceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 2 TEMNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 2 ~~mnG-~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
+.++| .++.|+++.|....++..+ ++++-|.|+|+...|+.|..+...||
T Consensus 55 e~~sgk~elqGkr~e~~~sv~kkqr-----------------------------srk~Qirnippql~wevld~Ll~qyg 105 (584)
T KOG2193|consen 55 ETLSGKVELQGKRQEVEHSVPKKQR-----------------------------SRKIQIRNIPPQLQWEVLDSLLAQYG 105 (584)
T ss_pred HhhchhhhhcCceeeccchhhHHHH-----------------------------hhhhhHhcCCHHHHHHHHHHHHhccC
Confidence 34555 4567777777766666433 35588999999999999999999999
Q ss_pred CeeEEEEeC-CC--cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 81 EIASVKIPV-GK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 81 ~v~~~~~~~-~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.+..|.... +. ...-|+|.+.+.+..||..|++..+....+++.|--..
T Consensus 106 ~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 106 TVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred CHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 999886532 32 23457888999999999999999999999999886443
No 142
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.24 Score=42.60 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=60.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEeCC------------------------------------
Q 029716 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 90 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~F~~~----G~v~~~~~~~~------------------------------------ 90 (189)
...+++|-|.|+.|. +...+|..+|+.| |.|.+|.|..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999998 7888999999887 58888887530
Q ss_pred -----------------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 91 -----------------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 91 -----------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
.=||.|+|.+.+.|.+..+.++|.++...-..+.+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0379999999999999999999999975544444443
No 143
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.54 E-value=0.1 Score=39.91 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=56.1
Q ss_pred CCccCCceecCcceEeecCCC-CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccc
Q 029716 1 MTEMNGVYCSSRPMRIGAATP-RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~ 79 (189)
|+.||+..|.|++|+|.++.. .......... ......................+++.+++..++..++...|..+
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
T COG0724 174 IEELNGKELEGRPLRVQKAQPASQPRSELSNN----LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR 249 (306)
T ss_pred HHHcCCCeECCceeEeeccccccccccccccc----cchhhhccccccccccccccceeeccccccccchhHHHHhcccc
Confidence 457899999999999999764 1111100000 00000001122234455667889999999999999999999999
Q ss_pred CCeeEEEEeCC
Q 029716 80 GEIASVKIPVG 90 (189)
Q Consensus 80 G~v~~~~~~~~ 90 (189)
+.+....+...
T Consensus 250 ~~~~~~~~~~~ 260 (306)
T COG0724 250 GDIVRASLPPS 260 (306)
T ss_pred ccceeeeccCC
Confidence 99977766543
No 144
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=94.49 E-value=0.031 Score=40.91 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCC-----CHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-eEEEeecc
Q 029716 54 SNTTIFVGGLDPNV-----TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~-----~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~a~ 127 (189)
-.+++.+.+++..+ .....+.+|..|-+...+.+.+..+..-|.|.+.+.|..|...++...|.+. .+++.|+.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 34567777777663 2234567777777776667777778888999999999999999999999888 89999998
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
+.-.
T Consensus 89 ~~~~ 92 (193)
T KOG4019|consen 89 PGHP 92 (193)
T ss_pred CCCc
Confidence 6443
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.07 E-value=0.2 Score=41.75 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=57.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEeCCC----cEEEEEecCHHHHHHHHHHhcCceeCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGK 118 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~-G~v~~~~~~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g 118 (189)
..+++.|+|-.+|..++..||..|...| -.|..++|+++. =..+|.|.+.++|..-.+.+||+.|+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3348899999999999999999999876 478889998863 358999999999999999999999853
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.82 E-value=0.54 Score=28.77 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=42.1
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 66 NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 66 ~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.++-++++..+..|. ..+| ..++.==||.|.+.++|++|....++..+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 477789999999984 2333 334433389999999999999999999887776654
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.27 E-value=0.33 Score=41.40 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=33.0
Q ss_pred CcEEEEEecCHHHHHHHHHHhcCcee---C-CeeEEEeeccCCCC
Q 029716 91 KGCGFVQFANRENAEEALHKLNGTVI---G-KQSVRLSWGRNPAN 131 (189)
Q Consensus 91 ~g~afV~f~~~~~a~~A~~~l~g~~~---~-g~~l~v~~a~~~~~ 131 (189)
.|||||.|.+.+++..+.+++||+.. . .+...+.||+-+..
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 59999999999999999999999864 4 34567888865443
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=91.10 E-value=1.3 Score=35.02 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEeCCCcEEEEEecCH
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVGKGCGFVQFANR 101 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v-~~~~~~~~~g~afV~f~~~ 101 (189)
...+-|+++||+.++...+|+..+.+.+.+ .++.+.-+.+-||++|-+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 345679999999999999999999987744 5777777788999999875
No 149
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.15 Score=38.71 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.||+.+|.||.|+|++|.+.+-.
T Consensus 69 iDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 69 IDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred hhcCchhhhcceeEEEeecCCcccc
Confidence 6789999999999999999987544
No 150
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=89.92 E-value=0.085 Score=30.76 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=16.2
Q ss_pred CccCCceecCcceEeecC
Q 029716 2 TEMNGVYCSSRPMRIGAA 19 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a 19 (189)
+.|||..+.|++|+|.||
T Consensus 39 ~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 39 EQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTSEETTEEEEEEEE
T ss_pred HHhCCCEECCcEEEEEEC
Confidence 468999999999999985
No 151
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=86.30 E-value=0.42 Score=33.99 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|++||+..|+|++|+|+++..+...
T Consensus 93 l~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 93 ISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred HHHcCCCEECCEEEEEEeCCcCCCC
Confidence 4579999999999999999876543
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.99 E-value=0.76 Score=36.60 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
...+++|++++.+.+.+.+...++...|.+....+.. .++++.+.|...+.+..|+.....+.+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4678999999999999988888888888776655433 4799999999999999999954445666666666555
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5433
No 153
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.53 E-value=9.3 Score=34.04 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=50.0
Q ss_pred CeEEEcCC--CCCCCHHHHHHHhcccCCeeE-----EEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 56 TTIFVGGL--DPNVTDEDLRQPFSQYGEIAS-----VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 56 ~~l~v~nl--~~~~~~~~l~~~F~~~G~v~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
.++|| ++ ...++..+|..++..-+.|.. |+|. ..|.||+-.. +.+...++.|++..+.|+.|.|+.+.
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 34444 34 345888888888887665543 3443 4789998864 56888999999999999999999875
No 154
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=81.46 E-value=0.2 Score=42.21 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||.++.||+|+|.|+.....+
T Consensus 77 ~~~lNg~~~~gr~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 77 IRNLNGAEFNGRKLRVNYASNRKNA 101 (435)
T ss_pred HHhcCCcccCCceEEeecccccchh
Confidence 4679999999999999999877654
No 155
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=81.37 E-value=8.5 Score=22.51 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=42.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCH----HHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 110 (189)
++.|.++.-.-....+++.+...-.|.++.+....+-.-|+|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 467777777777788999999999999999998889999999854 455555553
No 156
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=3.8 Score=33.98 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCCCcEEEEEecCHHHHHHHHHH
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHK 110 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 110 (189)
-.+.|=|-++|.....++|...|+.|+ .-.+|.|+- ...+|-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 457888899999998899999999996 345666654 47899999999999999873
No 157
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.37 E-value=13 Score=31.09 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEeC------------------------------------
Q 029716 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPV------------------------------------ 89 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~-~~~~~l~~~F~~~----G~v~~~~~~~------------------------------------ 89 (189)
.-..+.+|-|-||.|. +...+|..+|+.| |.|..|.|..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3456778999999998 7778999999876 5777776632
Q ss_pred ----------------CC-------------------cEEEEEecCHHHHHHHHHHhcCceeCCe--eEEEee
Q 029716 90 ----------------GK-------------------GCGFVQFANRENAEEALHKLNGTVIGKQ--SVRLSW 125 (189)
Q Consensus 90 ----------------~~-------------------g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 125 (189)
+. -||.|++++.+.+......++|.++... .+.+.|
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 01 2789999999999999999999988643 444444
No 158
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=78.64 E-value=0.76 Score=34.63 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCccCCceecCcceEeecCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~ 24 (189)
|++|+|.+|+|+.|+|..|.-...
T Consensus 72 ~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 72 LDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred HHhhcceeeccceeeehhhhcCCC
Confidence 578999999999999999885543
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.09 E-value=5.5 Score=31.69 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-------------cEEEEEecCHHHHHHH----HHHhcC-
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANRENAEEA----LHKLNG- 113 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~-------------g~afV~f~~~~~a~~A----~~~l~g- 113 (189)
.-.++.|.+.|+..+++-..+...|.+||.|+.|.++.+. ....+-|-+.+.|..- ++.|.-
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999998653 5678889888877653 233332
Q ss_pred -ceeCCeeEEEeecc
Q 029716 114 -TVIGKQSVRLSWGR 127 (189)
Q Consensus 114 -~~~~g~~l~v~~a~ 127 (189)
+.+....|.+.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23566677777664
No 160
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=72.40 E-value=0.46 Score=39.05 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
..+++|.+|+..+...++.+.|..+|+|....+-. ...+|.|+|....+...|+. ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 36789999999999999999999999998876643 34678899998888888887 6666665
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.53 E-value=10 Score=22.86 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=16.0
Q ss_pred HHHHHHhcccCCeeEEEEe
Q 029716 70 EDLRQPFSQYGEIASVKIP 88 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~ 88 (189)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999877654
No 162
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.21 E-value=1.2 Score=33.95 Aligned_cols=60 Identities=37% Similarity=0.497 Sum_probs=43.8
Q ss_pred CeEEEcC----CCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCce
Q 029716 56 TTIFVGG----LDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV 115 (189)
Q Consensus 56 ~~l~v~n----l~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~ 115 (189)
.+++.++ |...++++.+.+.|+.-+.+..+++.++ +.+.|+++.-..+.-.++....+..
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 3444555 6777889999999999999888877653 5688998877766666776555443
No 163
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=68.64 E-value=6.3 Score=31.66 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=28.9
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCCCC
Q 029716 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQF 134 (189)
Q Consensus 94 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 134 (189)
|||+|++.++|+.|++.+.... .+.+++..|-++.+--.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 7999999999999999655443 34557777776665444
No 164
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=67.73 E-value=22 Score=21.73 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=38.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~ 100 (189)
.++.|.++.-.-....+++.......|..+.+...++-++|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 467787777776778899999998889999999888899999998
No 165
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.83 E-value=1.1 Score=38.45 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 120 (189)
...|+||+.|++++++-++|..++..+-.+..+-+... ..+..|+|+---....|+.+||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 34678999999999999999999999877766655432 357788998777777778888887665544
No 166
>PF12402 nlz1: NocA-like zinc-finger protein 1; InterPro: IPR022129 This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases. These proteins may function as a transcriptional repressors [].
Probab=65.49 E-value=2.8 Score=24.07 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=8.2
Q ss_pred CCCCCCCcCCC
Q 029716 178 YPVYGSHQQQV 188 (189)
Q Consensus 178 ~~~yg~~~~~~ 188 (189)
.++|.|||+||
T Consensus 10 ~gayaGyP~qf 20 (55)
T PF12402_consen 10 AGAYAGYPSQF 20 (55)
T ss_pred cccccCCcccc
Confidence 45678888887
No 167
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.34 E-value=5.7 Score=29.49 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.||.|+|.........
T Consensus 94 VDN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 94 VDNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred EeccCCceecceeEEeeecccccCC
Confidence 4689999999999999987655433
No 168
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.16 E-value=33 Score=22.02 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=37.0
Q ss_pred EEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEeC---CCcEEEEEecCHHHHHHHHHH
Q 029716 59 FVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 110 (189)
Q Consensus 59 ~v~nl~~~~~~~~l~~~F~~-~G-~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~ 110 (189)
|+--++...+..++++.++. |+ .|.+|.... +.--|||++...++|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 33346788999999998887 55 666665432 334699999988887776543
No 169
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.05 E-value=11 Score=25.67 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=25.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecC-HHHHHHHHH
Q 029716 57 TIFVGGLDPN---------VTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFAN-RENAEEALH 109 (189)
Q Consensus 57 ~l~v~nl~~~---------~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~-~~~a~~A~~ 109 (189)
++.|-|++.. .+.+.|++.|+.|..++-..+-.. .++++|+|.+ ...-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4456666443 355789999999977653333222 4799999995 344444544
No 170
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=58.65 E-value=4.2 Score=32.84 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.9
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
++|||..|.||+|.|+.|..+-..
T Consensus 154 a~LHgt~VEGRkIEVn~ATarV~n 177 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATARVHN 177 (376)
T ss_pred HHhhcceeeceEEEEeccchhhcc
Confidence 479999999999999999988444
No 171
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=55.27 E-value=20 Score=29.65 Aligned_cols=63 Identities=19% Similarity=0.387 Sum_probs=47.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCcee
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVI 116 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~ 116 (189)
.-+.+.|.+||+..++.+|.+-..+|- .+....+... .+.++|.|...++...-...++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456788999999999999888887764 3333333321 36789999999998887788888775
No 172
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.59 E-value=9 Score=24.84 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhc
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFS 77 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~ 77 (189)
...+.++|.|.|||...++++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 345678999999999999999987654
No 173
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=54.49 E-value=25 Score=21.48 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=37.7
Q ss_pred HHHHHHhcccC-CeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 70 EDLRQPFSQYG-EIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 70 ~~l~~~F~~~G-~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
++|.+.|...| +|..+.-+..+ ..-||+.+...+ ..+.++-+.|.+..|+|+..+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46777777777 77777655432 466787765444 33445566788898888877643
No 174
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.25 E-value=11 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~ 85 (189)
.......++|+-|+|..++++.|.++.+.+|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345567899999999999999999999998865544
No 175
>PLN03213 repressor of silencing 3; Provisional
Probab=47.55 E-value=7.3 Score=33.38 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.0
Q ss_pred CCccCCceecCcceEeecCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATP 21 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~ 21 (189)
|++|||..+.||.|+|+.|++
T Consensus 67 ISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHHhcCCeecCceeEEeeccH
Confidence 568999999999999999885
No 176
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=45.65 E-value=64 Score=21.07 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHhcccCC-eeEEEEeCC--CcEEEEEecCHHHHHHHHHHhc
Q 029716 62 GLDPNVTDEDLRQPFSQYGE-IASVKIPVG--KGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 62 nl~~~~~~~~l~~~F~~~G~-v~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~ 112 (189)
.+.+.++...+..-|---|. -+...+-+| +.+|.|+|.+.+.+..|...|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 35666777777666654442 222233334 4799999999999999987664
No 177
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.39 E-value=38 Score=20.86 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHHHHhcccC-CeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 70 EDLRQPFSQYG-EIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 70 ~~l~~~F~~~G-~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
++|++.|...| +++.+..+..+ ..-||+.....+... .|+-+.|++.+|.|+-...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888888 77787766532 356777665432222 4566678899888876553
No 178
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=40.56 E-value=69 Score=20.29 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.1
Q ss_pred CeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCce
Q 029716 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (189)
Q Consensus 81 ~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~ 115 (189)
.|.++....+ +||-|||=.+.+++..|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4555544443 7999999999999999998777544
No 179
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=40.02 E-value=88 Score=19.13 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHHHHhcccCCeeEEEEeCC--CcEEEEEecCHHHHHHHHHHhc
Q 029716 70 EDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~ 112 (189)
.++.+.+..+| +.-..+.-. -++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667777788 555566555 5688888889999888887764
No 180
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=38.85 E-value=18 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.0
Q ss_pred CCccCCceecCcceEeecCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~ 24 (189)
+..|||..|+|..|+|+...-...
T Consensus 64 vr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 64 VRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred HhhcCCccccCceEEEEeecCCcc
Confidence 357999999999999998876643
No 181
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.45 E-value=57 Score=19.92 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 92 GCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 92 g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
.+.+|.|.|..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36789999999999998887765553
No 182
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.36 E-value=97 Score=19.47 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEeC---CCcEEEEEecCHHHHHHHHH
Q 029716 58 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALH 109 (189)
Q Consensus 58 l~v~nl~~~~~~~~l~~~F~~-~G-~v~~~~~~~---~~g~afV~f~~~~~a~~A~~ 109 (189)
-|+-.++...+..+++..++. |+ .|.++.... +.--|||++...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 344457889999999988887 55 666665432 23469999988777766544
No 183
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.06 E-value=1.2e+02 Score=19.62 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHhcccC-CeeEEEEeCCC--cEEEEEecCHHHHHHHHHHhc
Q 029716 70 EDLRQPFSQYG-EIASVKIPVGK--GCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 70 ~~l~~~F~~~G-~v~~~~~~~~~--g~afV~f~~~~~a~~A~~~l~ 112 (189)
+.++++++.+| +++++.+.... -...+++.|.+.|.++.-.+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 56777888775 88888877653 457889999998887765443
No 184
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=34.38 E-value=1.2e+02 Score=21.26 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=14.5
Q ss_pred CccCCceecCcceEeecCC
Q 029716 2 TEMNGVYCSSRPMRIGAAT 20 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~ 20 (189)
.+|.++.+.+++|.|....
T Consensus 43 ~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 43 STLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHhhhcccCCCcEEEEECC
Confidence 4567788889999987664
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.70 E-value=30 Score=18.40 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHhcccC
Q 029716 65 PNVTDEDLRQPFSQYG 80 (189)
Q Consensus 65 ~~~~~~~l~~~F~~~G 80 (189)
..+++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
No 186
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=5.5 Score=33.53 Aligned_cols=76 Identities=7% Similarity=-0.077 Sum_probs=55.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.+.|+..++..+++.++.-+|..||.|..+.+.+- +-.+||+-.+ .++..+|..+.-..+.+..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 45577888999999999999999999888766441 3467777654 4566677666666677778888887654
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
...
T Consensus 83 ~~~ 85 (572)
T KOG4365|consen 83 SEK 85 (572)
T ss_pred hhh
Confidence 433
No 187
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=30.97 E-value=1e+02 Score=27.29 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=39.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC
Q 029716 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100 (189)
Q Consensus 47 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~ 100 (189)
+..+...+...||+.+|+.++.++.=.++....-.++.+.|.+. +|| |+|+-
T Consensus 293 FlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp-gYA-IEYD~ 344 (621)
T COG0445 293 FLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP-GYA-IEYDY 344 (621)
T ss_pred EecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc-cee-eeecc
Confidence 44556667889999999999988877888888888888888753 676 55553
No 188
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.93 E-value=1e+02 Score=26.60 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=43.7
Q ss_pred EEcCCCCCCCH---HHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 59 FVGGLDPNVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 59 ~v~nl~~~~~~---~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
+||||..-... ..+.++-.+||.|-.+++-. .-.|.-.+.+.|+.|+. -++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 57887665433 45666666899999887742 34777889999999998 57888888764
No 189
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.37 E-value=67 Score=25.59 Aligned_cols=76 Identities=29% Similarity=0.611 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhcccCCeeEEEEeC-C---------------CcEE---------EE
Q 029716 54 SNTTIFVGGLDPN------------VTDEDLRQPFSQYGEIASVKIPV-G---------------KGCG---------FV 96 (189)
Q Consensus 54 ~~~~l~v~nl~~~------------~~~~~l~~~F~~~G~v~~~~~~~-~---------------~g~a---------fV 96 (189)
...|||+.+||.. -+++.|+..|+.||.|..|.|+. + ++|+ +|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457777777653 46788999999999999988753 1 2333 34
Q ss_pred EecCHHHHHHHHHHhcCcee----CCe----eEEEeeccCC
Q 029716 97 QFANRENAEEALHKLNGTVI----GKQ----SVRLSWGRNP 129 (189)
Q Consensus 97 ~f~~~~~a~~A~~~l~g~~~----~g~----~l~v~~a~~~ 129 (189)
.|.....-..|+.+|.|.++ ++. .++|+|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 44444455567777777654 232 4677776543
No 190
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=29.46 E-value=20 Score=21.89 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 029716 70 EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l 111 (189)
++|.+.|..+....++. +-.+|..|.|.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v----kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh----hhhhccCCCCHHHHHHHHHHh
Confidence 57777777654433321 236899999988888777654
No 191
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.71 E-value=2.1e+02 Score=19.82 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=47.1
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHhcccC-CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPN---VTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~---~~~~~l~~~F~~~G-~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+...|.|...... .+-..+.+.+..-| .++++... .+-..|.|++.++-.+|.+.|....-++-.|.+..+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3456666655333 45567788888766 55555443 4578899999999999998777554444455555544
No 192
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=2.3e+02 Score=20.36 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=36.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccc---CCeeEEEEeC------------C---C-cEEEEEecCHHH
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPV------------G---K-GCGFVQFANREN 103 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~---G~v~~~~~~~------------~---~-g~afV~f~~~~~ 103 (189)
..+|++..++..+++++.+++.++- ++++.+.+-+ + + .|-+|.|++-..
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3789999999999999988888864 4666666643 1 2 377888877543
No 193
>PRK11901 hypothetical protein; Reviewed
Probab=25.31 E-value=2.4e+02 Score=23.10 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe---C-CC-cEEEE--EecCHHHHHHHHHHhcCc
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---V-GK-GCGFV--QFANRENAEEALHKLNGT 114 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~---~-~~-g~afV--~f~~~~~a~~A~~~l~g~ 114 (189)
....+|-|.. ..+++.|..|..+++ +..+.+. + ++ .|..| .|.+.++|..|+..|.-.
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3344555543 345777887777664 2223222 2 22 34433 788999999999988743
No 194
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=25.20 E-value=1e+02 Score=25.67 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHhcccC-CeeEEE-EeCCCcEEEEEecCHHHHHHHH
Q 029716 65 PNVTDEDLRQPFSQYG-EIASVK-IPVGKGCGFVQFANRENAEEAL 108 (189)
Q Consensus 65 ~~~~~~~l~~~F~~~G-~v~~~~-~~~~~g~afV~f~~~~~a~~A~ 108 (189)
.+....+|+.+.+-|| .|.... ......|-+|+|++.+.|.+-+
T Consensus 12 l~Fr~pE~eala~lF~~~i~~sq~~~t~~PF~iv~~~s~~~Ar~~~ 57 (421)
T KOG2671|consen 12 LDFRLPELEALASLFGLQIDESQKLHTTSPFFIVEFESEEIARNLI 57 (421)
T ss_pred hccchHHHHHHHHHHhhhhhhhhhhcCCCceEEEEeCchHHHHHHH
Confidence 3444556666666666 444443 4445689999999999988743
No 195
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.58 E-value=1.5e+02 Score=19.04 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---CCcEEEEEe
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQF 98 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~---~~g~afV~f 98 (189)
...-|||++++..+-|.-...+.+..++-.-+-+-. ..||.|-+.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 356689999999888876666666544333332222 347887766
No 196
>PF15628 RRM_DME: RRM in Demeter
Probab=23.56 E-value=98 Score=20.57 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=32.5
Q ss_pred cCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHhcc
Q 029716 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG----LDPNVTDEDLRQPFSQ 78 (189)
Q Consensus 4 mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~F~~ 78 (189)
|||.++.-..+......+.....-.. ..--+-..+.||++. +-..++.++|.+.|.+
T Consensus 17 LnGTYFQ~nEVFaD~~Ss~~Pi~vpr------------------~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~ 77 (103)
T PF15628_consen 17 LNGTYFQVNEVFADHESSRNPIDVPR------------------ELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWK 77 (103)
T ss_pred cCceEEEEEEEEeccccccCCeeccH------------------HHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhc
Confidence 56776666666665555543331000 011123456788874 3445788899999986
No 197
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=23.13 E-value=2.1e+02 Score=19.95 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=26.2
Q ss_pred cCCeeEEEEeCCCcE-EEEEecC--------HHHHHHHHHHhcCceeCCeeEEEe
Q 029716 79 YGEIASVKIPVGKGC-GFVQFAN--------RENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 79 ~G~v~~~~~~~~~g~-afV~f~~--------~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.|.+..-+|..-..| |||+++. .|-|..-++.+|...--|..+.|.
T Consensus 5 vG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vK 59 (129)
T COG1098 5 VGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVK 59 (129)
T ss_pred ccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEE
Confidence 355555554433344 6888876 355666677677655455555444
No 198
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=2.1e+02 Score=18.91 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHhcccCC--------eeEEEEeCC-CcEEEEEecCHHHHHHHH
Q 029716 71 DLRQPFSQYGE--------IASVKIPVG-KGCGFVQFANRENAEEAL 108 (189)
Q Consensus 71 ~l~~~F~~~G~--------v~~~~~~~~-~g~afV~f~~~~~a~~A~ 108 (189)
.....|++||. +..+.=..+ .....|+|.|.+.|..+.
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 35667777763 222221112 357899999998887754
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.56 E-value=1.4e+02 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=23.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~ 85 (189)
.....|+|||++++..-+..++...-.+...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 3456799999999999999888875444333
No 200
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.43 E-value=25 Score=28.72 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHhcccCCeeEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCc
Q 029716 70 EDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGT 114 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~ 114 (189)
..+.+++.+.|.|..-.+.+ +-|.+||-.-..++++++++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 45555666666665443322 4588999999999999999988865
No 201
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.13 E-value=53 Score=25.05 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=16.9
Q ss_pred HHHHHHhcc-cCCeeEEEEeCCCcEEEEEecCH
Q 029716 70 EDLRQPFSQ-YGEIASVKIPVGKGCGFVQFANR 101 (189)
Q Consensus 70 ~~l~~~F~~-~G~v~~~~~~~~~g~afV~f~~~ 101 (189)
++|.+.|.+ |+.-..- .-.|.|+||+|++.
T Consensus 89 edL~~EF~~~~~~~~~~--~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQ--PASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccCC--ccCCCeeEEehhHH
Confidence 455555543 5532111 12378999999874
No 202
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=20.56 E-value=2.3e+02 Score=19.36 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=18.5
Q ss_pred CeeEEEEeCCCcEE--EEEec--CHHHHHHHHHHhcC
Q 029716 81 EIASVKIPVGKGCG--FVQFA--NRENAEEALHKLNG 113 (189)
Q Consensus 81 ~v~~~~~~~~~g~a--fV~f~--~~~~a~~A~~~l~g 113 (189)
.|.+|.+..|..+| ||++- +.++.+.+++.|+.
T Consensus 35 ~Vt~V~vS~Dl~~A~Vyvt~l~~~~~~~~~~~~~L~~ 71 (118)
T COG0858 35 TVTDVEVSKDLSHAKVYVTVLGDEESSKAEILAALNK 71 (118)
T ss_pred EEEEEEEcCCCceEEEEEEecCCchhhHHHHHHHHHH
Confidence 37788888887666 44431 33344444544443
No 203
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.16 E-value=1.3e+02 Score=24.83 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEe
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIP 88 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~-G~v~~~~~~ 88 (189)
++++. |...++.++|+++|.+| ..-..|+|.
T Consensus 248 Ti~~~-l~~~~t~~~i~~~y~~~Y~~epfVrv~ 279 (349)
T COG0002 248 TIYLK-LKDLVTLEELHAAYEEFYAGEPFVRVV 279 (349)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHhCCCCeEEEe
Confidence 44442 55568999999999874 433344443
Done!