Query 029716
Match_columns 189
No_of_seqs 253 out of 2228
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sjq_A Polypyrimidine tract-bi 99.9 3.5E-22 1.2E-26 133.9 10.7 82 52-133 13-96 (105)
2 1x4c_A Splicing factor, argini 99.9 2.4E-21 8.2E-26 131.1 14.8 81 51-132 11-96 (108)
3 2i2y_A Fusion protein consists 99.9 8.7E-23 3E-27 146.0 7.9 117 2-130 31-149 (150)
4 2dgu_A Heterogeneous nuclear r 99.9 3.1E-21 1.1E-25 129.4 14.0 81 52-134 8-88 (103)
5 2cq1_A PTB-like protein L; RRM 99.9 4.2E-21 1.4E-25 128.3 14.5 83 51-133 11-95 (101)
6 4fxv_A ELAV-like protein 1; RN 99.9 6.2E-22 2.1E-26 132.0 10.3 77 52-128 16-98 (99)
7 1x4d_A Matrin 3; structural ge 99.9 1.1E-21 3.9E-26 131.2 11.4 80 52-131 12-94 (102)
8 1wex_A Hypothetical protein (r 99.9 2.3E-21 7.8E-26 130.3 13.0 84 50-133 10-95 (104)
9 1h2v_Z 20 kDa nuclear CAP bind 99.9 9.1E-22 3.1E-26 141.6 11.8 82 51-132 35-122 (156)
10 3r27_A HnRNP L, heterogeneous 99.9 1.4E-21 4.8E-26 129.8 11.4 80 51-130 17-98 (100)
11 2cq3_A RNA-binding protein 9; 99.9 7.1E-21 2.4E-25 127.6 15.0 86 49-134 9-98 (103)
12 2cpj_A Non-POU domain-containi 99.9 3.6E-21 1.2E-25 128.2 12.4 82 50-131 10-91 (99)
13 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.3E-21 2.8E-25 127.3 14.2 84 50-133 10-97 (103)
14 2wbr_A GW182, gawky, LD47780P; 99.9 2.4E-21 8.1E-26 124.8 10.3 75 53-127 5-79 (89)
15 3md3_A Nuclear and cytoplasmic 99.9 2.4E-21 8.3E-26 139.6 11.4 102 2-128 59-166 (166)
16 1why_A Hypothetical protein ri 99.9 6.7E-21 2.3E-25 126.4 12.5 81 51-131 13-95 (97)
17 2d9p_A Polyadenylate-binding p 99.9 5.7E-21 1.9E-25 128.1 12.3 84 50-133 10-97 (103)
18 2dgo_A Cytotoxic granule-assoc 99.9 1.7E-20 5.9E-25 128.1 14.7 85 49-133 9-99 (115)
19 2cph_A RNA binding motif prote 99.9 8.9E-21 3E-25 127.9 12.9 85 49-133 9-101 (107)
20 2ad9_A Polypyrimidine tract-bi 99.9 4.6E-21 1.6E-25 131.4 11.3 83 51-133 27-111 (119)
21 2yh0_A Splicing factor U2AF 65 99.9 1.2E-20 4E-25 140.0 14.4 122 3-131 69-196 (198)
22 1x4g_A Nucleolysin TIAR; struc 99.9 7.8E-21 2.7E-25 128.7 12.3 82 51-132 21-102 (109)
23 1wf1_A RNA-binding protein RAL 99.9 6.2E-21 2.1E-25 129.4 11.6 79 52-132 24-103 (110)
24 1x4f_A Matrin 3; structural ge 99.9 6.9E-21 2.4E-25 129.2 11.4 81 52-132 22-105 (112)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8.8E-21 3E-25 126.9 11.7 83 51-133 8-96 (102)
26 2cpz_A CUG triplet repeat RNA- 99.9 2.1E-20 7.1E-25 127.8 13.8 84 50-133 20-109 (115)
27 1x4a_A Splicing factor, argini 99.9 3.7E-20 1.3E-24 125.3 14.9 83 49-131 16-101 (109)
28 2ytc_A PRE-mRNA-splicing facto 99.9 6.5E-21 2.2E-25 123.3 10.5 78 50-127 7-85 (85)
29 2dnq_A RNA-binding protein 4B; 99.9 1.2E-20 4.2E-25 123.4 11.9 79 52-132 5-83 (90)
30 2dgt_A RNA-binding protein 30; 99.8 2.1E-20 7.3E-25 122.8 12.7 80 51-132 6-85 (92)
31 2cpd_A Apobec-1 stimulating pr 99.8 3.9E-20 1.3E-24 123.1 14.1 81 49-131 9-91 (99)
32 4f25_A Polyadenylate-binding p 99.8 5.7E-21 1.9E-25 130.7 10.2 79 54-132 4-86 (115)
33 4f02_A Polyadenylate-binding p 99.8 3.1E-22 1.1E-26 151.0 4.1 106 1-131 74-183 (213)
34 1x5u_A Splicing factor 3B subu 99.8 1.9E-20 6.5E-25 125.9 12.4 83 50-132 10-98 (105)
35 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-20 4.7E-25 124.7 11.5 81 52-132 6-93 (96)
36 2dgs_A DAZ-associated protein 99.8 2.6E-20 8.8E-25 124.0 12.8 82 51-133 6-93 (99)
37 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.3E-25 124.3 12.4 81 52-132 5-91 (99)
38 1x5t_A Splicing factor 3B subu 99.8 9.7E-21 3.3E-25 125.2 10.5 81 53-133 3-90 (96)
39 2do0_A HnRNP M, heterogeneous 99.8 6.7E-20 2.3E-24 124.9 15.0 82 51-132 11-97 (114)
40 2cqd_A RNA-binding region cont 99.8 6.2E-20 2.1E-24 125.6 14.9 83 49-132 11-99 (116)
41 2fy1_A RNA-binding motif prote 99.8 2.1E-20 7.3E-25 128.1 12.5 81 52-132 4-89 (116)
42 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-20 7.6E-25 125.5 12.4 82 52-133 12-101 (105)
43 2cq0_A Eukaryotic translation 99.8 2.2E-20 7.7E-25 125.1 12.3 83 51-133 11-99 (103)
44 2do4_A Squamous cell carcinoma 99.8 3.2E-20 1.1E-24 123.7 12.9 83 49-131 11-98 (100)
45 2dnz_A Probable RNA-binding pr 99.8 2.5E-20 8.5E-25 123.0 12.1 80 53-132 3-88 (95)
46 1u6f_A Tcubp1, RNA-binding pro 99.8 2.4E-20 8.2E-25 131.6 12.8 85 48-132 35-125 (139)
47 3pgw_A U1-A; protein-RNA compl 99.8 2.2E-20 7.6E-25 146.1 14.0 78 51-128 203-282 (282)
48 2la4_A Nuclear and cytoplasmic 99.8 7.7E-21 2.6E-25 127.0 9.6 78 52-129 24-101 (101)
49 1x5p_A Negative elongation fac 99.8 7.4E-20 2.5E-24 121.4 14.3 81 50-132 10-90 (97)
50 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.9E-25 125.1 11.5 82 51-132 8-95 (102)
51 3q2s_C Cleavage and polyadenyl 99.8 1.7E-21 5.9E-26 148.5 7.0 76 54-129 67-150 (229)
52 2dnm_A SRP46 splicing factor; 99.8 1.4E-20 4.9E-25 126.1 10.6 83 50-132 8-96 (103)
53 1x4h_A RNA-binding protein 28; 99.8 4.6E-20 1.6E-24 125.1 13.2 85 49-133 9-105 (111)
54 2cpf_A RNA binding motif prote 99.8 1.8E-20 6.3E-25 124.4 10.9 81 53-133 3-92 (98)
55 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.9E-25 127.4 10.7 78 53-130 4-87 (110)
56 2g4b_A Splicing factor U2AF 65 99.8 1.5E-20 5.1E-25 136.5 11.0 98 3-127 69-172 (172)
57 3ex7_B RNA-binding protein 8A; 99.8 9.8E-21 3.3E-25 131.4 9.5 84 49-132 16-105 (126)
58 3md1_A Nuclear and cytoplasmic 99.8 2.2E-20 7.5E-25 120.2 10.5 76 55-130 1-82 (83)
59 2cqh_A IGF-II mRNA-binding pro 99.8 9.9E-21 3.4E-25 124.6 8.8 80 52-132 5-86 (93)
60 2e5h_A Zinc finger CCHC-type a 99.8 6.4E-20 2.2E-24 120.8 12.6 78 50-127 11-94 (94)
61 1wi8_A EIF-4B, eukaryotic tran 99.8 7.3E-20 2.5E-24 122.9 12.7 80 51-132 11-97 (104)
62 2cpe_A RNA-binding protein EWS 99.8 6.1E-20 2.1E-24 125.0 12.5 83 50-132 10-106 (113)
63 1qm9_A Polypyrimidine tract-bi 99.8 2.7E-20 9.3E-25 138.4 11.7 128 2-129 59-197 (198)
64 2adc_A Polypyrimidine tract-bi 99.8 3.3E-20 1.1E-24 141.3 12.4 128 2-129 90-228 (229)
65 2jvo_A Nucleolar protein 3; nu 99.8 3.5E-20 1.2E-24 125.4 10.8 82 48-131 24-105 (108)
66 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.7E-20 9.1E-25 120.9 9.8 77 53-129 4-86 (87)
67 2dhg_A TRNA selenocysteine ass 99.8 2.7E-20 9.4E-25 124.9 10.1 83 51-133 5-94 (104)
68 2dnp_A RNA-binding protein 14; 99.8 6.9E-20 2.4E-24 119.8 11.8 78 52-131 6-83 (90)
69 2lxi_A RNA-binding protein 10; 99.8 9.1E-21 3.1E-25 124.4 7.4 77 55-131 1-85 (91)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.8E-20 1.3E-24 119.6 10.3 76 52-127 4-85 (85)
71 1b7f_A Protein (SXL-lethal pro 99.8 2.6E-20 8.8E-25 134.6 10.4 98 2-126 63-168 (168)
72 2err_A Ataxin-2-binding protei 99.8 3.4E-20 1.2E-24 125.7 10.3 82 48-129 22-107 (109)
73 2hvz_A Splicing factor, argini 99.8 2.4E-20 8.4E-25 124.5 9.4 77 56-132 1-78 (101)
74 4a8x_A RNA-binding protein wit 99.8 4.8E-20 1.6E-24 119.8 10.5 78 54-131 3-87 (88)
75 2xnq_A Nuclear polyadenylated 99.8 7.5E-20 2.6E-24 121.4 11.6 81 48-130 15-96 (97)
76 1p27_B RNA-binding protein 8A; 99.8 2.8E-20 9.5E-25 125.3 9.6 82 49-130 17-104 (106)
77 1fje_B Nucleolin RBD12, protei 99.8 3E-20 1E-24 135.4 10.5 101 3-129 72-174 (175)
78 2cqc_A Arginine/serine-rich sp 99.8 7.2E-20 2.5E-24 120.7 11.2 79 50-128 10-94 (95)
79 2dng_A Eukaryotic translation 99.8 1.3E-19 4.6E-24 121.4 12.7 81 50-132 10-96 (103)
80 2x1f_A MRNA 3'-END-processing 99.8 5.9E-20 2E-24 121.6 10.7 78 54-131 1-84 (96)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 7E-20 2.4E-24 123.3 11.2 83 50-132 8-99 (106)
82 1oo0_B CG8781-PA, drosophila Y 99.8 6.2E-20 2.1E-24 124.4 10.6 83 49-131 20-108 (110)
83 2qfj_A FBP-interacting repress 99.8 2.5E-20 8.6E-25 140.0 9.5 115 2-132 88-208 (216)
84 1whx_A Hypothetical protein ri 99.8 1.7E-20 5.7E-25 127.6 7.7 78 53-130 8-85 (111)
85 2cpi_A CCR4-NOT transcription 99.8 1.3E-19 4.4E-24 123.2 12.0 80 51-130 11-102 (111)
86 2khc_A Testis-specific RNP-typ 99.8 1E-19 3.4E-24 124.8 11.4 79 49-127 34-118 (118)
87 1l3k_A Heterogeneous nuclear r 99.8 6.8E-20 2.3E-24 135.7 11.3 108 4-133 74-187 (196)
88 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-19 5.6E-24 119.7 12.0 79 51-130 15-95 (97)
89 2jvr_A Nucleolar protein 3; RN 99.8 4.3E-20 1.5E-24 125.4 9.2 79 52-130 25-106 (111)
90 2dgv_A HnRNP M, heterogeneous 99.8 4.6E-20 1.6E-24 121.0 9.0 80 52-131 5-88 (92)
91 2ywk_A Putative RNA-binding pr 99.8 5.8E-20 2E-24 121.2 9.6 79 50-128 11-94 (95)
92 2kt5_A RNA and export factor-b 99.8 2.8E-19 9.6E-24 123.7 13.4 82 51-132 31-117 (124)
93 2cq2_A Hypothetical protein LO 99.8 7.3E-20 2.5E-24 124.3 10.1 82 52-133 22-110 (114)
94 2kxn_B Transformer-2 protein h 99.8 7.6E-20 2.6E-24 127.6 10.4 82 49-130 40-127 (129)
95 2lkz_A RNA-binding protein 5; 99.8 5.3E-20 1.8E-24 121.6 9.0 77 52-128 6-94 (95)
96 2la6_A RNA-binding protein FUS 99.8 9.6E-20 3.3E-24 121.2 10.3 80 48-127 6-99 (99)
97 2kvi_A Nuclear polyadenylated 99.8 4.5E-20 1.6E-24 122.2 8.6 80 51-132 6-86 (96)
98 1fxl_A Paraneoplastic encephal 99.8 5.1E-20 1.7E-24 132.8 9.4 98 2-126 62-167 (167)
99 3beg_B Splicing factor, argini 99.8 5.6E-20 1.9E-24 125.8 9.1 79 52-131 13-96 (115)
100 2fc9_A NCL protein; structure 99.8 3.4E-19 1.1E-23 118.9 12.6 82 50-131 10-93 (101)
101 1x4b_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 123.9 10.8 80 52-132 24-109 (116)
102 2jwn_A Embryonic polyadenylate 99.8 1.3E-20 4.5E-25 130.4 5.5 78 54-132 35-118 (124)
103 2jrs_A RNA-binding protein 39; 99.8 1.2E-19 3.9E-24 122.9 9.9 82 49-130 20-107 (108)
104 2cpx_A Hypothetical protein FL 99.8 3.6E-19 1.2E-23 121.5 12.3 83 51-133 21-109 (115)
105 2e5i_A Heterogeneous nuclear r 99.8 7.5E-19 2.6E-23 121.3 13.9 79 55-133 25-106 (124)
106 3tyt_A Heterogeneous nuclear r 99.8 4.7E-20 1.6E-24 138.4 8.5 126 1-126 59-204 (205)
107 3smz_A Protein raver-1, ribonu 99.8 7.6E-20 2.6E-24 143.2 9.9 106 2-131 155-266 (284)
108 2dh8_A DAZ-associated protein 99.8 1.5E-19 5.2E-24 121.5 10.1 82 50-132 11-98 (105)
109 2cqp_A RNA-binding protein 12; 99.8 1E-19 3.4E-24 120.8 8.9 80 51-130 11-96 (98)
110 2div_A TRNA selenocysteine ass 99.8 1.6E-19 5.6E-24 120.0 9.9 79 52-130 6-95 (99)
111 3ulh_A THO complex subunit 4; 99.8 2.3E-19 7.7E-24 121.0 10.5 78 50-127 24-106 (107)
112 2cq4_A RNA binding motif prote 99.8 4.1E-20 1.4E-24 126.1 6.9 80 51-131 21-106 (114)
113 1x5o_A RNA binding motif, sing 99.8 6.7E-19 2.3E-23 120.0 12.6 81 50-130 20-113 (114)
114 1nu4_A U1A RNA binding domain; 99.8 1.7E-19 6E-24 119.4 9.5 80 52-131 5-91 (97)
115 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-18 3.7E-23 116.8 13.3 81 50-132 10-96 (103)
116 1wg1_A KIAA1579 protein, homol 99.8 3.4E-19 1.2E-23 116.1 10.4 77 53-130 3-79 (88)
117 2a3j_A U1 small nuclear ribonu 99.8 2.4E-19 8.3E-24 124.6 10.2 81 51-131 25-112 (127)
118 2dis_A Unnamed protein product 99.8 4.7E-19 1.6E-23 119.8 11.0 81 52-132 5-95 (109)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-19 8.7E-24 130.0 10.3 85 49-133 66-156 (165)
120 3ucg_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 116.1 9.8 76 54-130 5-86 (89)
121 3pgw_S U1-70K; protein-RNA com 99.8 9E-19 3.1E-23 145.0 14.7 83 52-134 99-187 (437)
122 2ghp_A U4/U6 snRNA-associated 99.8 2.1E-19 7.3E-24 141.2 10.2 107 2-129 177-291 (292)
123 3p5t_L Cleavage and polyadenyl 99.8 4.5E-20 1.5E-24 120.8 5.3 77 56-132 2-86 (90)
124 2dgw_A Probable RNA-binding pr 99.8 7.8E-19 2.7E-23 115.0 11.2 77 52-130 7-88 (91)
125 1p1t_A Cleavage stimulation fa 99.8 5.8E-20 2E-24 123.2 5.8 81 52-132 5-91 (104)
126 2m2b_A RNA-binding protein 10; 99.8 2.4E-19 8.2E-24 125.3 8.8 83 49-132 17-111 (131)
127 2e5g_A U6 snRNA-specific termi 99.8 1.3E-18 4.4E-23 114.7 11.6 79 53-132 6-85 (94)
128 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-18 4.6E-23 122.4 12.5 78 49-126 57-140 (140)
129 2fc8_A NCL protein; structure 99.8 1.7E-18 5.9E-23 115.6 12.4 83 50-132 10-95 (102)
130 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-18 3.8E-23 125.5 12.2 82 51-132 66-153 (158)
131 3s7r_A Heterogeneous nuclear r 99.8 9.1E-19 3.1E-23 113.6 10.0 75 51-126 7-87 (87)
132 2cpy_A RNA-binding protein 12; 99.8 1.9E-19 6.6E-24 122.9 7.0 79 51-130 11-95 (114)
133 2lea_A Serine/arginine-rich sp 99.8 2.6E-19 8.8E-24 125.8 7.8 84 50-133 42-131 (135)
134 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-18 3.6E-23 118.3 10.6 83 49-132 19-107 (109)
135 1x4e_A RNA binding motif, sing 99.8 1.6E-19 5.6E-24 116.7 6.3 75 53-127 3-83 (85)
136 1s79_A Lupus LA protein; RRM, 99.8 5E-19 1.7E-23 118.7 8.8 76 52-128 8-88 (103)
137 2bz2_A Negative elongation fac 99.8 7.6E-19 2.6E-23 121.2 9.9 80 51-132 35-114 (121)
138 2nlw_A Eukaryotic translation 99.8 7.6E-19 2.6E-23 118.2 9.4 79 52-130 12-101 (105)
139 1wg5_A Heterogeneous nuclear r 99.8 2E-18 6.9E-23 115.9 11.5 80 50-130 10-95 (104)
140 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.5E-19 8.5E-24 119.5 6.9 80 49-130 13-99 (100)
141 3ns6_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 121.0 5.4 76 54-129 5-93 (100)
142 1sjr_A Polypyrimidine tract-bi 99.8 1.1E-18 3.9E-23 125.4 10.6 81 52-132 43-127 (164)
143 3lqv_A PRE-mRNA branch site pr 99.8 9.4E-19 3.2E-23 119.4 9.7 79 52-130 5-86 (115)
144 3zzy_A Polypyrimidine tract-bi 99.8 1.7E-18 5.9E-23 120.1 11.0 84 52-135 25-112 (130)
145 2e44_A Insulin-like growth fac 99.8 1.7E-18 6E-23 114.3 10.3 79 52-130 12-93 (96)
146 3n9u_C Cleavage and polyadenyl 99.8 7.2E-19 2.5E-23 126.5 9.1 76 54-129 54-137 (156)
147 3nmr_A Cugbp ELAV-like family 99.8 6.3E-19 2.2E-23 128.0 8.5 100 2-127 65-175 (175)
148 2ek1_A RNA-binding protein 12; 99.8 3.6E-19 1.2E-23 117.4 6.3 77 52-128 12-94 (95)
149 1fjc_A Nucleolin RBD2, protein 99.8 1.9E-18 6.7E-23 114.1 9.6 80 51-131 12-93 (96)
150 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-18 7.2E-23 115.4 9.8 78 51-130 11-93 (102)
151 2hzc_A Splicing factor U2AF 65 99.8 2E-18 6.9E-23 111.9 8.9 72 53-125 4-86 (87)
152 2diu_A KIAA0430 protein; struc 99.8 3.5E-18 1.2E-22 111.0 9.3 75 54-132 7-87 (96)
153 3u1l_A PRE-mRNA-splicing facto 99.8 9.6E-19 3.3E-23 133.4 7.7 80 52-131 131-231 (240)
154 1fj7_A Nucleolin RBD1, protein 99.8 6.5E-18 2.2E-22 112.6 10.9 80 52-132 14-98 (101)
155 3d2w_A TAR DNA-binding protein 99.8 5.1E-18 1.8E-22 110.8 9.7 78 50-131 6-86 (89)
156 1wf0_A TDP-43, TAR DNA-binding 99.8 2.4E-18 8.3E-23 111.9 7.9 78 53-132 3-81 (88)
157 2mss_A Protein (musashi1); RNA 99.8 1.2E-18 4.1E-23 109.9 6.2 69 57-126 1-75 (75)
158 2db1_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 117.0 9.2 78 52-130 14-99 (118)
159 3tyt_A Heterogeneous nuclear r 99.8 7.1E-18 2.4E-22 126.5 11.3 77 54-130 3-81 (205)
160 2ki2_A SS-DNA binding protein 99.8 3.6E-19 1.2E-23 116.3 3.6 75 56-131 2-82 (90)
161 2lcw_A RNA-binding protein FUS 99.6 6.7E-20 2.3E-24 125.4 0.0 80 52-131 4-97 (116)
162 1wel_A RNA-binding protein 12; 99.7 1.8E-18 6E-23 119.8 6.9 78 52-130 22-105 (124)
163 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-18 4.5E-23 110.2 5.8 70 56-126 1-76 (77)
164 2krb_A Eukaryotic translation 99.7 1.3E-18 4.5E-23 111.5 5.8 69 55-123 1-80 (81)
165 2cjk_A Nuclear polyadenylated 99.7 7.1E-19 2.4E-23 127.0 4.9 96 6-129 65-166 (167)
166 2dnn_A RNA-binding protein 12; 99.7 1E-17 3.6E-22 113.3 10.0 75 52-128 13-92 (109)
167 3egn_A RNA-binding protein 40; 99.7 4.3E-18 1.5E-22 120.6 8.3 81 52-132 42-133 (143)
168 2hgl_A HNRPF protein, heteroge 99.7 3.7E-18 1.3E-22 119.9 7.4 79 50-129 39-125 (136)
169 2f3j_A RNA and export factor b 99.7 1.2E-17 4.1E-22 122.5 9.6 80 51-130 84-168 (177)
170 2hgn_A Heterogeneous nuclear r 99.7 1.8E-18 6.1E-23 121.9 4.6 79 51-131 42-125 (139)
171 3smz_A Protein raver-1, ribonu 99.7 1.6E-17 5.6E-22 129.9 10.3 97 2-131 75-177 (284)
172 3sde_A Paraspeckle component 1 99.7 1.4E-17 4.8E-22 129.1 9.4 97 2-131 76-181 (261)
173 2lmi_A GRSF-1, G-rich sequence 99.7 5.8E-18 2E-22 114.2 6.2 79 51-130 7-93 (107)
174 4f02_A Polyadenylate-binding p 99.7 3.1E-17 1E-21 123.5 10.5 79 52-130 12-96 (213)
175 1fxl_A Paraneoplastic encephal 99.7 5.5E-17 1.9E-21 116.7 10.9 78 54-131 1-84 (167)
176 1iqt_A AUF1, heterogeneous nuc 99.7 5.6E-18 1.9E-22 106.8 4.5 69 57-126 1-75 (75)
177 2xs2_A Deleted in azoospermia- 99.7 8.3E-18 2.8E-22 112.3 4.8 78 52-131 6-88 (102)
178 2hgm_A HNRPF protein, heteroge 99.7 3E-17 1E-21 113.7 7.7 77 50-128 37-120 (126)
179 3sde_A Paraspeckle component 1 99.7 1.3E-16 4.6E-21 123.6 12.0 80 50-129 17-96 (261)
180 2ghp_A U4/U6 snRNA-associated 99.7 1.3E-16 4.3E-21 125.3 11.4 95 3-131 99-199 (292)
181 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.6E-21 115.5 10.0 78 54-131 2-85 (168)
182 2dit_A HIV TAT specific factor 99.7 6.1E-16 2.1E-20 105.0 13.2 82 51-132 11-105 (112)
183 2adc_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 121.2 10.0 79 52-130 31-111 (229)
184 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 112.8 5.7 76 53-129 21-105 (123)
185 3pgw_A U1-A; protein-RNA compl 99.7 3E-16 1E-20 122.6 11.4 80 51-130 5-91 (282)
186 3md3_A Nuclear and cytoplasmic 99.7 3.7E-16 1.3E-20 112.2 10.7 76 56-131 1-81 (166)
187 1l3k_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 115.4 9.7 81 50-131 8-94 (196)
188 2dnl_A Cytoplasmic polyadenyla 99.7 8.7E-16 3E-20 104.6 10.7 73 53-128 6-87 (114)
189 2pe8_A Splicing factor 45; RRM 99.7 8.4E-16 2.9E-20 103.2 10.4 76 53-128 6-93 (105)
190 1qm9_A Polypyrimidine tract-bi 99.7 2.5E-16 8.7E-21 116.8 8.2 78 54-131 2-81 (198)
191 2g4b_A Splicing factor U2AF 65 99.7 7.3E-16 2.5E-20 111.6 10.2 76 54-130 3-89 (172)
192 2qfj_A FBP-interacting repress 99.6 8.4E-16 2.9E-20 115.2 10.1 78 53-130 26-109 (216)
193 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 112.7 10.1 76 54-130 3-89 (198)
194 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.2E-20 112.3 9.5 75 54-129 108-187 (193)
195 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.3E-20 110.0 8.4 78 54-131 2-90 (175)
196 2j8a_A Histone-lysine N-methyl 99.6 1E-15 3.5E-20 104.9 6.8 73 56-128 3-95 (136)
197 3tht_A Alkylated DNA repair pr 99.6 2.8E-15 9.4E-20 120.0 9.5 77 51-127 14-97 (345)
198 1fje_B Nucleolin RBD12, protei 99.6 7.2E-15 2.5E-19 106.7 10.0 80 51-131 9-93 (175)
199 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.2E-14 1.1E-18 94.5 12.2 76 55-132 10-93 (100)
200 2cjk_A Nuclear polyadenylated 99.6 5.8E-15 2E-19 106.3 8.2 74 54-129 2-81 (167)
201 3v4m_A Splicing factor U2AF 65 99.6 1E-14 3.5E-19 97.9 8.8 76 53-128 3-96 (105)
202 1jmt_A Splicing factor U2AF 35 99.5 5.2E-15 1.8E-19 99.2 3.8 67 60-126 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.5 6.3E-14 2.2E-18 95.8 8.8 75 54-128 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.5 2.1E-13 7.2E-18 92.7 10.2 75 53-127 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.4 9.5E-13 3.2E-17 89.8 9.4 77 51-127 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1E-12 3.6E-17 84.5 8.3 74 53-129 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 2.1E-11 7.1E-16 78.8 8.1 74 52-128 12-94 (95)
208 2l9w_A U4/U6 snRNA-associated- 99.0 2.7E-09 9.4E-14 70.3 10.4 73 53-125 19-96 (117)
209 3dxb_A Thioredoxin N-terminall 99.0 6.4E-10 2.2E-14 83.8 7.0 60 68-127 142-211 (222)
210 1wey_A Calcipressin 1; structu 98.5 4E-07 1.4E-11 59.7 8.0 77 54-130 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.2 4.5E-05 1.5E-09 49.8 10.7 76 53-131 6-86 (104)
212 1wwh_A Nucleoporin 35, nucleop 98.0 3.7E-05 1.3E-09 51.7 8.2 74 52-127 21-95 (119)
213 4f25_A Polyadenylate-binding p 97.9 1.8E-06 6E-11 58.2 0.7 52 1-71 62-113 (115)
214 1uw4_A UPF3X; nonsense mediate 97.9 6E-05 2E-09 48.4 7.7 72 56-127 2-86 (91)
215 1whv_A Poly(A)-specific ribonu 97.9 7.3E-05 2.5E-09 48.3 7.3 58 52-112 13-70 (100)
216 3ctr_A Poly(A)-specific ribonu 97.5 0.00012 3.9E-09 47.5 4.7 55 55-112 6-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.5 9.8E-05 3.4E-09 50.4 3.8 72 54-127 6-97 (132)
218 2l08_A Regulator of nonsense t 97.4 0.00039 1.3E-08 45.0 6.1 75 53-127 7-94 (97)
219 3pq1_A Poly(A) RNA polymerase; 97.0 0.00038 1.3E-08 57.6 3.6 54 55-109 53-107 (464)
220 2hvz_A Splicing factor, argini 96.7 0.00031 1E-08 45.6 0.5 46 2-64 55-100 (101)
221 2i2y_A Fusion protein consists 96.2 0.0017 5.8E-08 45.2 1.7 38 91-129 13-51 (150)
222 3lqv_A PRE-mRNA branch site pr 95.4 0.0006 2.1E-08 45.3 -3.1 45 2-81 65-109 (115)
223 2kn4_A Immunoglobulin G-bindin 95.3 0.011 3.8E-07 41.3 2.9 27 90-116 12-38 (158)
224 2diu_A KIAA0430 protein; struc 94.8 0.01 3.5E-07 38.2 1.4 26 1-26 63-88 (96)
225 3d45_A Poly(A)-specific ribonu 94.0 0.27 9.3E-06 41.2 8.7 56 54-112 439-494 (507)
226 2dgu_A Heterogeneous nuclear r 93.2 0.064 2.2E-06 34.4 3.0 25 1-25 62-86 (103)
227 2dgo_A Cytotoxic granule-assoc 92.2 0.12 4E-06 33.8 3.2 25 1-25 74-98 (115)
228 1x5t_A Splicing factor 3B subu 92.0 0.085 2.9E-06 33.2 2.3 25 1-25 65-89 (96)
229 2fy1_A RNA-binding motif prote 91.8 0.15 5.1E-06 33.6 3.4 25 1-25 65-89 (116)
230 2cqh_A IGF-II mRNA-binding pro 91.2 0.074 2.5E-06 33.4 1.3 25 1-25 61-86 (93)
231 1x4c_A Splicing factor, argini 91.1 0.12 4E-06 33.5 2.3 25 1-25 67-96 (108)
232 2dnz_A Probable RNA-binding pr 90.9 0.057 1.9E-06 34.0 0.6 24 2-25 65-88 (95)
233 2dgt_A RNA-binding protein 30; 90.5 0.08 2.7E-06 33.2 1.0 24 2-25 62-85 (92)
234 2dnp_A RNA-binding protein 14; 90.4 0.077 2.7E-06 33.1 0.9 25 1-25 60-84 (90)
235 1whw_A Hypothetical protein ri 90.3 0.093 3.2E-06 33.3 1.2 25 1-25 67-91 (99)
236 2dnq_A RNA-binding protein 4B; 90.3 0.077 2.6E-06 33.1 0.8 24 2-25 60-83 (90)
237 2wbr_A GW182, gawky, LD47780P; 89.7 0.075 2.6E-06 33.7 0.4 20 1-20 60-79 (89)
238 1wg1_A KIAA1579 protein, homol 89.3 0.096 3.3E-06 32.5 0.6 23 1-23 57-79 (88)
239 3s8s_A Histone-lysine N-methyl 88.8 0.094 3.2E-06 34.4 0.4 23 1-23 65-87 (110)
240 2x1f_A MRNA 3'-END-processing 88.8 0.1 3.4E-06 33.0 0.4 24 2-25 62-85 (96)
241 2ki2_A SS-DNA binding protein 88.2 0.091 3.1E-06 32.7 -0.0 25 1-25 59-83 (90)
242 2dhg_A TRNA selenocysteine ass 87.8 0.19 6.4E-06 32.1 1.3 25 1-25 68-93 (104)
243 1p1t_A Cleavage stimulation fa 87.7 0.15 5.3E-06 32.5 0.9 24 2-25 68-91 (104)
244 2do0_A HnRNP M, heterogeneous 87.7 0.38 1.3E-05 31.2 2.8 25 1-25 73-97 (114)
245 2lcw_A RNA-binding protein FUS 87.5 0.11 3.6E-06 34.2 0.0 25 1-25 74-98 (116)
246 3s6e_A RNA-binding protein 39; 86.9 0.11 3.8E-06 34.4 -0.2 22 1-22 72-93 (114)
247 2e5g_A U6 snRNA-specific termi 86.4 0.37 1.3E-05 30.1 2.1 24 1-25 62-85 (94)
248 2dis_A Unnamed protein product 86.3 0.66 2.3E-05 29.7 3.4 25 1-25 69-95 (109)
249 3ex7_B RNA-binding protein 8A; 86.2 0.13 4.4E-06 34.2 -0.2 25 1-25 81-105 (126)
250 2kvi_A Nuclear polyadenylated 85.3 0.11 3.9E-06 32.8 -0.8 24 2-25 63-86 (96)
251 2m2b_A RNA-binding protein 10; 85.3 0.35 1.2E-05 32.4 1.7 25 1-25 83-111 (131)
252 1whx_A Hypothetical protein ri 84.9 0.13 4.5E-06 33.6 -0.6 23 1-23 63-85 (111)
253 3zzy_A Polypyrimidine tract-bi 84.4 0.23 8E-06 33.7 0.4 25 1-25 83-109 (130)
254 1h2v_Z 20 kDa nuclear CAP bind 84.3 0.28 9.4E-06 33.9 0.8 25 1-25 98-122 (156)
255 1sjr_A Polypyrimidine tract-bi 84.2 0.59 2E-05 33.0 2.5 25 1-25 101-127 (164)
256 2e5i_A Heterogeneous nuclear r 83.8 0.26 8.8E-06 33.2 0.4 25 1-25 79-105 (124)
257 2cqd_A RNA-binding region cont 83.8 1.3 4.6E-05 28.6 4.0 22 1-23 76-97 (116)
258 2g0c_A ATP-dependent RNA helic 81.5 4.8 0.00016 24.0 5.6 68 57-127 2-75 (76)
259 3fry_A Probable copper-exporti 79.7 5.4 0.00019 23.1 5.4 55 55-110 6-60 (73)
260 3q2s_C Cleavage and polyadenyl 78.7 0.69 2.4E-05 34.3 1.3 22 1-22 129-150 (229)
261 2db1_A Heterogeneous nuclear r 71.6 1.5 5E-05 28.8 1.3 19 4-22 80-98 (118)
262 1sjq_A Polypyrimidine tract-bi 70.6 0.86 2.9E-05 29.6 -0.0 21 5-25 75-95 (105)
263 1wex_A Hypothetical protein (r 70.3 1 3.6E-05 29.0 0.3 22 3-24 70-93 (104)
264 4eyt_A Telomerase associated p 67.4 20 0.00069 22.4 8.0 59 52-112 9-67 (129)
265 3pgw_S U1-70K; protein-RNA com 66.3 1.9 6.6E-05 35.2 1.2 24 1-24 161-184 (437)
266 3beg_B Splicing factor, argini 66.0 2 6.7E-05 27.9 1.0 23 1-23 68-95 (115)
267 3dxs_X Copper-transporting ATP 65.3 17 0.00057 20.7 5.8 55 56-110 4-62 (74)
268 4a4j_A Pacszia, cation-transpo 64.3 13 0.00045 20.8 4.5 55 56-110 4-61 (69)
269 1wel_A RNA-binding protein 12; 63.0 2.8 9.4E-05 27.5 1.3 20 3-22 85-104 (124)
270 2cpy_A RNA-binding protein 12; 62.4 2.9 0.0001 27.0 1.3 20 4-23 76-95 (114)
271 1yg0_A COP associated protein; 54.6 23 0.0008 19.0 6.3 54 57-110 4-60 (66)
272 2g9o_A Copper-transporting ATP 52.5 35 0.0012 20.4 5.2 56 56-111 5-64 (90)
273 2j8a_A Histone-lysine N-methyl 50.0 4.9 0.00017 27.3 0.8 18 3-20 77-94 (136)
274 3ts2_A Protein LIN-28 homolog 48.4 3.8 0.00013 28.2 0.1 28 70-99 2-29 (148)
275 2xmw_A PACS-N, cation-transpor 48.0 32 0.0011 18.7 6.6 55 56-110 5-62 (71)
276 1q8l_A Copper-transporting ATP 46.7 41 0.0014 19.5 7.7 57 55-111 10-70 (84)
277 1kvi_A Copper-transporting ATP 45.6 40 0.0014 19.0 6.9 57 55-111 9-69 (79)
278 1cpz_A Protein (COPZ); copper 45.3 35 0.0012 18.3 7.7 54 57-110 3-60 (68)
279 1aw0_A Menkes copper-transport 44.7 38 0.0013 18.5 4.9 55 57-111 6-64 (72)
280 4e8u_A Putative uncharacterize 44.1 64 0.0022 22.7 5.8 53 57-109 14-81 (172)
281 2kt2_A Mercuric reductase; nme 44.0 38 0.0013 18.4 6.6 54 57-110 3-59 (69)
282 2ew9_A Copper-transporting ATP 43.8 61 0.0021 21.0 5.7 57 55-111 81-141 (149)
283 2l3m_A Copper-ION-binding prot 43.6 39 0.0013 18.4 6.4 55 56-110 7-65 (71)
284 1y3j_A Copper-transporting ATP 43.6 43 0.0015 18.8 5.2 56 56-111 5-64 (77)
285 1osd_A MERP, hypothetical prot 42.7 41 0.0014 18.4 7.2 55 57-111 6-64 (72)
286 2ofg_X Zinc-transporting ATPas 40.8 65 0.0022 20.1 7.6 56 56-111 10-69 (111)
287 1p6t_A Potential copper-transp 40.5 74 0.0025 20.7 6.9 56 56-111 76-135 (151)
288 2kyz_A Heavy metal binding pro 38.7 35 0.0012 18.7 3.3 52 57-109 4-55 (67)
289 3cjk_B Copper-transporting ATP 37.7 53 0.0018 18.2 6.6 55 57-111 5-63 (75)
290 1yjr_A Copper-transporting ATP 37.2 53 0.0018 18.0 8.0 56 55-110 5-64 (75)
291 1fvq_A Copper-transporting ATP 35.9 54 0.0019 17.8 5.5 55 57-111 5-62 (72)
292 1mwy_A ZNTA; open-faced beta-s 34.0 61 0.0021 17.8 7.9 56 56-111 5-62 (73)
293 2qif_A Copper chaperone COPZ; 30.8 63 0.0022 17.0 6.6 54 57-110 5-62 (69)
294 3iwl_A Copper transport protei 29.8 75 0.0026 17.5 5.6 53 56-110 4-57 (68)
295 3h7h_B Transcription elongatio 29.0 1.1E+02 0.0039 19.4 4.9 35 81-115 40-75 (106)
296 2crl_A Copper chaperone for su 28.4 1E+02 0.0035 18.7 7.4 54 56-110 21-75 (98)
297 2k2p_A Uncharacterized protein 27.9 80 0.0027 18.6 3.8 55 56-110 24-79 (85)
298 1opz_A Potential copper-transp 27.9 79 0.0027 17.2 7.1 56 56-111 8-67 (76)
299 3lpe_A Putative transcription 27.2 1.1E+02 0.0038 18.7 5.7 34 81-114 39-73 (92)
300 2e5p_A Protein PHF1, PHD finge 27.2 65 0.0022 18.8 2.9 19 80-100 28-46 (68)
301 2ldi_A Zinc-transporting ATPas 25.7 83 0.0028 16.7 6.5 53 57-109 6-62 (71)
302 2rop_A Copper-transporting ATP 24.0 1.8E+02 0.0062 20.1 7.7 56 56-111 124-183 (202)
303 1jww_A Potential copper-transp 22.9 1.1E+02 0.0036 17.0 4.8 54 57-110 6-63 (80)
304 2eqj_A Metal-response element- 22.4 89 0.003 18.2 2.9 14 87-100 37-50 (66)
305 2kkh_A Putative heavy metal tr 21.2 1.4E+02 0.0047 17.6 8.6 57 55-111 17-77 (95)
306 3d53_A Inorganic pyrophosphata 21.1 1.4E+02 0.0047 21.0 4.3 38 69-111 132-169 (173)
307 2kzf_A RBFA, ribosome-binding 20.6 1.7E+02 0.0058 18.4 5.1 34 79-112 35-71 (106)
308 3fut_A Dimethyladenosine trans 20.3 87 0.003 23.5 3.4 29 56-85 111-139 (271)
No 1
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=133.91 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEeeccCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNP 129 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~ 129 (189)
....++|||+|||+++++++|+++|++||+|.+|.|+++|+||||+|++.++|++|++.|++ ..|.|+.|+|.||+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 45689999999999999999999999999999999999999999999999999999998864 7899999999999876
Q ss_pred CCCC
Q 029716 130 ANKQ 133 (189)
Q Consensus 130 ~~~~ 133 (189)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 2
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.4e-21 Score=131.14 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCC-----eeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-----QSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l~v~~ 125 (189)
.....++|||+|||+++++++|+++|++||+|..|.|+.+ +||||+|.+.++|++||+.||+..|.| +.|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3456899999999999999999999999999999999988 999999999999999999999999999 9999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
|+++...
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9986544
No 3
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=8.7e-23 Score=146.03 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=93.9
Q ss_pred Ccc-CCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 2 TEM-NGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 2 ~~m-nG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
++| ||..|+| +|+|.++..+....... ...............++|||+|||+.+++++|+++|++||
T Consensus 31 ~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 31 KQYANDNGVDG-EWTYDDATKTFTVTEGS-----------HHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp HHHHHHHTCCC-EEEEETTTTEEEEECSS-----------SSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred HHHhcCCCCCC-ceecccccCcccccccc-----------ccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 356 8888888 89998877542211000 0001112234456789999999999999999999999999
Q ss_pred CeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 81 ~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.|.+|++..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+|++++.
T Consensus 99 ~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 99 PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999987 8999999999999999999999999999999999998754
No 4
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=3.1e-21 Score=129.41 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
....++|||+|||..+++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|.|+.|+|.|++++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4567999999999999999999999999999999988 57999999999999999999999999999999999998765
Q ss_pred CCC
Q 029716 132 KQF 134 (189)
Q Consensus 132 ~~~ 134 (189)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 543
No 5
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.2e-21 Score=128.33 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~a~~ 128 (189)
...+.++|||+|||+.+++++|+++|++||.|.++.++++++||||+|++.++|++|++.|+ +..|.|+.|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 34567899999999999999999999999999999999999999999999999999999774 6789999999999997
Q ss_pred CCCCC
Q 029716 129 PANKQ 133 (189)
Q Consensus 129 ~~~~~ 133 (189)
+....
T Consensus 91 ~~~~~ 95 (101)
T 2cq1_A 91 KELKT 95 (101)
T ss_dssp SSCCC
T ss_pred ccCcC
Confidence 66543
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=132.05 Aligned_cols=77 Identities=32% Similarity=0.557 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||.++|+++|+++|++||+|.+++++++ +|||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999864 47999999999999999999999999999999999
Q ss_pred ccC
Q 029716 126 GRN 128 (189)
Q Consensus 126 a~~ 128 (189)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 985
No 7
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=131.17 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCc--eeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~ 128 (189)
..+.++|||+|||+ .+++++|+++|++||.|.+|.|+++++||||+|++.++|++|++.||+. .|.|+.|+|.||+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34678999999999 9999999999999999999999999999999999999999999999864 59999999999996
Q ss_pred CCC
Q 029716 129 PAN 131 (189)
Q Consensus 129 ~~~ 131 (189)
...
T Consensus 92 ~~~ 94 (102)
T 1x4d_A 92 YKR 94 (102)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 8
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.3e-21 Score=130.33 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCc--eeCCeeEEEeecc
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSVRLSWGR 127 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~ 127 (189)
....+.++|||+|||+.+++++|+++|++||.|..|.++++|+||||+|++.++|++|++.|++. .|.|+.|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34556789999999999999999999999999999999999999999999999999999988765 4899999999999
Q ss_pred CCCCCC
Q 029716 128 NPANKQ 133 (189)
Q Consensus 128 ~~~~~~ 133 (189)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wex_A 90 SKRITR 95 (104)
T ss_dssp SSSCCC
T ss_pred CccccC
Confidence 766543
No 9
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=9.1e-22 Score=141.58 Aligned_cols=82 Identities=27% Similarity=0.472 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999764 4799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029716 125 WGRNPANK 132 (189)
Q Consensus 125 ~a~~~~~~ 132 (189)
||++....
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99975543
No 10
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=129.76 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCce--eCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v~~a~~ 128 (189)
...++++|||+|||+.+|+++|+++|++||.|.++.++++|+||||+|++.++|.+|++.|++.. |.|+.|.|.|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34578899999999999999999999999999999999999999999999999999999999875 7899999999987
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.1e-21 Score=127.60 Aligned_cols=86 Identities=34% Similarity=0.511 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.......++|||+|||..+++++|+++|+.||.|..|+|..+ ++||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345567899999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 029716 125 WGRNPANKQF 134 (189)
Q Consensus 125 ~a~~~~~~~~ 134 (189)
+++++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998765443
No 12
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=128.17 Aligned_cols=82 Identities=29% Similarity=0.548 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
....+.++|||+|||..+++++|+++|++||.|..+.+.++++||||+|.+.++|++|++.||+..|.|+.|+|.|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 029716 130 AN 131 (189)
Q Consensus 130 ~~ 131 (189)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.3e-21 Score=127.25 Aligned_cols=84 Identities=32% Similarity=0.522 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
......++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44567899999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 029716 126 GRNPANKQ 133 (189)
Q Consensus 126 a~~~~~~~ 133 (189)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99866543
No 14
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.4e-21 Score=124.76 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
..+.-|||+||++.+|+++|+++|.+||+|.++++..++|||||+|.+.++|++|++.||+.++.|+.|+|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999994
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.4e-21 Score=139.59 Aligned_cols=102 Identities=26% Similarity=0.530 Sum_probs=91.8
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|++|+|.++...... .....++|||+|||..+++++|+++|++||.
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQQS-------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCCCC-------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTT
T ss_pred HHcCCCccCCCeeEEEEcCCCCCC-------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCC
Confidence 478999999999999999776432 2346789999999999999999999999999
Q ss_pred eeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 82 v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
|..+.+..+ +++|||+|.+.++|.+|++.||+..|+|+.|+|.||++
T Consensus 114 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999765 57999999999999999999999999999999999973
No 16
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.7e-21 Score=126.39 Aligned_cols=81 Identities=23% Similarity=0.541 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeC--CeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~ 128 (189)
...+.++|||+|||..+++++|+++|++||.|..+.+..+++||||+|.+.++|++|++.||+..|. |+.|+|.|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 99999999997
Q ss_pred CCC
Q 029716 129 PAN 131 (189)
Q Consensus 129 ~~~ 131 (189)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=128.06 Aligned_cols=84 Identities=30% Similarity=0.564 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
......++|||+|||+.+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34557899999999999999999999999999999999854 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 029716 126 GRNPANKQ 133 (189)
Q Consensus 126 a~~~~~~~ 133 (189)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99866544
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.7e-20 Score=128.13 Aligned_cols=85 Identities=31% Similarity=0.675 Sum_probs=77.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.......++|||+|||..+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999875 48999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 029716 123 LSWGRNPANKQ 133 (189)
Q Consensus 123 v~~a~~~~~~~ 133 (189)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999776543
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.9e-21 Score=127.87 Aligned_cols=85 Identities=25% Similarity=0.543 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CcEEEEEecCHHHHHHHHHHh-cCceeCCee
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKL-NGTVIGKQS 120 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-------~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~ 120 (189)
.......++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|++|++.| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999876 689999999999999999999 999999999
Q ss_pred EEEeeccCCCCCC
Q 029716 121 VRLSWGRNPANKQ 133 (189)
Q Consensus 121 l~v~~a~~~~~~~ 133 (189)
|+|.|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999866543
No 20
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.6e-21 Score=131.44 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~ 128 (189)
...+.++|||+|||+++++++|+++|++||.|.+|.|+++++||||+|++.++|++|++.|++ ..|.|+.|+|.||++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 445678999999999999999999999999999999999999999999999999999998874 689999999999987
Q ss_pred CCCCC
Q 029716 129 PANKQ 133 (189)
Q Consensus 129 ~~~~~ 133 (189)
+....
T Consensus 107 k~~~~ 111 (119)
T 2ad9_A 107 KELKT 111 (119)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 66543
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=1.2e-20 Score=140.01 Aligned_cols=122 Identities=15% Similarity=0.308 Sum_probs=97.2
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
+|||..|.|++|+|.++............. ....+...........++|||+|||..+++++|+++|++||.|
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENP-------SVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCS-------SCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCC-------cCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 689999999999999988764332111000 0001111122334677999999999999999999999999999
Q ss_pred eEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 83 ~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
..+.+..+ ++||||+|.+.++|++|++.||+..|+|+.|+|.|++++..
T Consensus 142 ~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 142 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999865 58999999999999999999999999999999999997654
No 22
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.8e-21 Score=128.74 Aligned_cols=82 Identities=33% Similarity=0.668 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.....++|||+|||..+++++|+++|+.||.|..|.+..+++||||+|.+.++|++|++.||+..|.|+.|+|.|+++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CC
Q 029716 131 NK 132 (189)
Q Consensus 131 ~~ 132 (189)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 23
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.85 E-value=6.2e-21 Score=129.45 Aligned_cols=79 Identities=32% Similarity=0.597 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
....++|||+|||+. +++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.||+..|+|+.|+|++++++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 345689999999999 999999999999999999998 57999999999999999999999999999999999998655
Q ss_pred CC
Q 029716 131 NK 132 (189)
Q Consensus 131 ~~ 132 (189)
..
T Consensus 102 ~~ 103 (110)
T 1wf1_A 102 PD 103 (110)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 24
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.9e-21 Score=129.21 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcC--ceeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~ 128 (189)
..+.++|||+|||++ +++++|+++|++||+|.+|.|+++++||||+|.+.++|++|++.|++ ..|.|+.|+|.||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 556889999999998 99999999999999999999999999999999999999999998864 569999999999986
Q ss_pred CCCC
Q 029716 129 PANK 132 (189)
Q Consensus 129 ~~~~ 132 (189)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 5544
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=126.86 Aligned_cols=83 Identities=27% Similarity=0.552 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876554
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=2.1e-20 Score=127.79 Aligned_cols=84 Identities=26% Similarity=0.491 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||.++++++|+++|+.||.|..|+|+.++ +||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999998653 79999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
.|++++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9999766543
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-20 Score=125.33 Aligned_cols=83 Identities=23% Similarity=0.473 Sum_probs=75.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.......++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344567899999999999999999999999999999999764 57999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029716 126 GRNPAN 131 (189)
Q Consensus 126 a~~~~~ 131 (189)
+++...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987543
No 28
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=123.31 Aligned_cols=78 Identities=38% Similarity=0.736 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEeecc
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 127 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a~ 127 (189)
......++|||+|||..+++++|+++|++||.|..+.+.++++||||+|.+.++|++|++.| ++..+.|+.|+|+||+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999 9999999999999985
No 29
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=123.41 Aligned_cols=79 Identities=25% Similarity=0.509 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
....++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.||+..|+|+.|+|++++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4567999999999999999999999999999999998 79999999999999999999999999999999999997655
Q ss_pred C
Q 029716 132 K 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=122.77 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.....++|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|++|++.||+..|.|+.|+|++++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 456789999999999999999999999999999999984 599999999999999999999999999999999998765
Q ss_pred CC
Q 029716 131 NK 132 (189)
Q Consensus 131 ~~ 132 (189)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 31
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-20 Score=123.14 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.......++|||+|||+.+++++|+++|++| |.|..+.+. ++||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3445678999999999999999999999999 999998876 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=5.7e-21 Score=130.73 Aligned_cols=79 Identities=32% Similarity=0.591 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
..++|||+|||+++++++|+++|++||.|.+|+|+++ ++||||+|.+.++|++||+.|++..|+|+.|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4578999999999999999999999999999999865 589999999999999999999999999999999999876
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 33
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=3.1e-22 Score=151.00 Aligned_cols=106 Identities=30% Similarity=0.472 Sum_probs=93.0
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G 80 (189)
|+.||+..+.|+.|+|.++....... ....++|||+|||+.+++++|+++|++||
T Consensus 74 i~~~~~~~~~g~~i~~~~~~~~~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 74 LDTMNFDVIKGKPVRIMWSQRDPSLR-------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp HHHHTTCEETTEECEEEECCCCTHHH-------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred HHHhhhhhcCCccccccccccccccc-------------------------ccccccceECCcccccHHHHHHHHHhhcC
Confidence 35789999999999999987664321 22457899999999999999999999999
Q ss_pred CeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 81 EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 81 ~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
.|..++|+.+ ++||||+|.+.++|++||+.|||..|+|+.|+|.+|+++..
T Consensus 129 ~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 129 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred CeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 9999999764 58999999999999999999999999999999999987543
No 34
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=125.87 Aligned_cols=83 Identities=25% Similarity=0.484 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567899999999999999999999999999999999765 479999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999976654
No 35
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=124.71 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
....++|||+|||+.+++++|+ ++|++||.|.+|+|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3466899999999999999999 99999999999999876 7999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029716 125 WGRNPANK 132 (189)
Q Consensus 125 ~a~~~~~~ 132 (189)
+|++....
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=123.96 Aligned_cols=82 Identities=24% Similarity=0.498 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++ |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999999764 5899999999999999999 99999999999999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999766543
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=124.30 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||..+++++|+++|+.||.|..|.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999875 48999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9986654
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=125.25 Aligned_cols=81 Identities=30% Similarity=0.573 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~-~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.+.++|||+|||..+++++|+++|++||.|..+ +|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 88775 68999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 029716 126 GRNPANKQ 133 (189)
Q Consensus 126 a~~~~~~~ 133 (189)
++++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99766543
No 39
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-20 Score=124.95 Aligned_cols=82 Identities=24% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4456799999999999999999999999999999999875 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.2e-20 Score=125.57 Aligned_cols=83 Identities=34% Similarity=0.519 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.......++|||+|||..+++++|+++|++||.|..|+|+.+ ++||||+|.+.++|++||+.|++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 445667899999999999999999999999999999999875 47999999999999999999998 89999999
Q ss_pred EeeccCCCCC
Q 029716 123 LSWGRNPANK 132 (189)
Q Consensus 123 v~~a~~~~~~ 132 (189)
|+++++....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999865433
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=128.07 Aligned_cols=81 Identities=22% Similarity=0.511 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||.++++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999875 499999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 976654
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=2.2e-20 Score=125.53 Aligned_cols=82 Identities=27% Similarity=0.547 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCC---eeEEE
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK---QSVRL 123 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 123 (189)
....++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.+ +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999876 6899999999999999999999999988 99999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
.||+++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876554
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=125.13 Aligned_cols=83 Identities=25% Similarity=0.491 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567899999999999999999999999999999999865 4799999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
|++++....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999766543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=123.73 Aligned_cols=83 Identities=18% Similarity=0.416 Sum_probs=75.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-----cEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-----GCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~-----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.......++|||+|||..+++++|+++|++||.|..+.+..++ +||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678899999999999999999999999999999998753 89999999999999999999999999999999
Q ss_pred eeccCCCC
Q 029716 124 SWGRNPAN 131 (189)
Q Consensus 124 ~~a~~~~~ 131 (189)
.+++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99997654
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=123.03 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
...++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=131.56 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=76.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
........++|||+|||.++++++|+++|+.||+|.+|+|+.+ ++||||+|.+.++|++|++.||+..|.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3445567899999999999999999999999999999998754 5899999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 029716 122 RLSWGRNPANK 132 (189)
Q Consensus 122 ~v~~a~~~~~~ 132 (189)
+|+++++...+
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999976544
No 47
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=2.2e-20 Score=146.09 Aligned_cols=78 Identities=23% Similarity=0.425 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~ 128 (189)
.....++|||+|||..+++++|+++|++||.|.+|++..++ +||||+|.+.++|++|++.|||..|. |+.|+|+||+.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 34467899999999999999999999999999999999876 99999999999999999999999999 99999999973
No 48
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.7e-21 Score=126.98 Aligned_cols=78 Identities=26% Similarity=0.476 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
....++|||+|||.++++++|+++|++||.|.++++.++++||||+|.+.++|++|++.||+..|+|+.|+|.||+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999863
No 49
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-20 Score=121.35 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
......++|||+|| .+++++|+++|++||.|..|.|...++||||+|.+.++|++|++.||+..|.|+.|+|.|++++
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 34456789999996 8999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=125.10 Aligned_cols=82 Identities=30% Similarity=0.607 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|++||.|..+.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3557899999999999999999999999999999999874 5799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029716 125 WGRNPANK 132 (189)
Q Consensus 125 ~a~~~~~~ 132 (189)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99976654
No 51
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1.7e-21 Score=148.53 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
..++|||+||++.+|+++|+++|++|| .|++|+|+++ ++||||+|.+.++|++||+.||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999865 48999999999999999999999999999999999
Q ss_pred ccCC
Q 029716 126 GRNP 129 (189)
Q Consensus 126 a~~~ 129 (189)
|++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=126.09 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566899999999999999999999999999999999764 589999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
+++++....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999975544
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=125.15 Aligned_cols=85 Identities=21% Similarity=0.457 Sum_probs=76.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhc------Ccee
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLN------GTVI 116 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~------g~~~ 116 (189)
+......++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++|++.|| +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 344567889999999999999999999999999999999854 6899999999999999999999 9999
Q ss_pred CCeeEEEeeccCCCCCC
Q 029716 117 GKQSVRLSWGRNPANKQ 133 (189)
Q Consensus 117 ~g~~l~v~~a~~~~~~~ 133 (189)
+|+.|+|.|++++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999999765543
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=124.39 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.+.++|||+|||.++++++|+++|++||.|..|.+.. .++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999874 2479999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
.++++.....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765443
No 55
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=127.36 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.+.++|||+||++.+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999754 589999999999999999999999999999999999
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 56
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=1.5e-20 Score=136.48 Aligned_cols=98 Identities=16% Similarity=0.460 Sum_probs=88.7
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
+|||..|.|++|+|.++...... ...++|||+|||..+++++|+++|++||.|
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPL---------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCC---------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred HhCCcEecCceeeecCCcccCCC---------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 68999999999999987665322 247899999999999999999999999999
Q ss_pred eEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 83 ~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
..+.+..+ ++||||+|.+.++|++|++.||+..|+|+.|+|+||.
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999776 5899999999999999999999999999999999973
No 57
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=9.8e-21 Score=131.40 Aligned_cols=84 Identities=25% Similarity=0.510 Sum_probs=76.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+......++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 445566889999999999999999999999999999999765 68999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 029716 123 LSWGRNPANK 132 (189)
Q Consensus 123 v~~a~~~~~~ 132 (189)
|.||++....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876554
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.2e-20 Score=120.21 Aligned_cols=76 Identities=29% Similarity=0.621 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
+++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|+|+.|+|.|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999865 68999999999999999999999999999999999997
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 59
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-21 Score=124.58 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEeCCCcEEEEEecCHHHHHHHHHHhcC-ceeCCeeEEEeeccCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNP 129 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~-v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~a~~~ 129 (189)
....++|||+|||.++++++|+++|++||. |..+.+ ..++||||+|.+.++|++|++.||+ ..|+|+.|+|+|++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 346789999999999999999999999999 555544 4689999999999999999999999 9999999999999976
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.4e-20 Score=120.80 Aligned_cols=78 Identities=26% Similarity=0.446 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999764 579999999999999999999999999999999
Q ss_pred eecc
Q 029716 124 SWGR 127 (189)
Q Consensus 124 ~~a~ 127 (189)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-20 Score=122.86 Aligned_cols=80 Identities=29% Similarity=0.534 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.....++|||+|||..+++++|+++|+.|| |..|.|+.+ ++||||+|.+.++|++|| .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999998754 579999999999999999 89999999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
.+++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999976554
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=125.01 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEeCC------CcEEEEEecCHHHHHHHHHHhcCce
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANRENAEEALHKLNGTV 115 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--------~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~ 115 (189)
......++|||+|||..+++++|+++|+.||.|. .|+|..+ ++||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 6888765 5899999999999999999999999
Q ss_pred eCCeeEEEeeccCCCCC
Q 029716 116 IGKQSVRLSWGRNPANK 132 (189)
Q Consensus 116 ~~g~~l~v~~a~~~~~~ 132 (189)
|.|+.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999976544
No 63
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=138.39 Aligned_cols=128 Identities=22% Similarity=0.355 Sum_probs=96.3
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCC--------CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG--------GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 73 (189)
+.|||..|.|++|+|.++........+....... ..................+.++|||+|||..+++++|+
T Consensus 59 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 138 (198)
T 1qm9_A 59 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 138 (198)
T ss_dssp HHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHH
T ss_pred HHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHH
Confidence 4689999999999999998764322111100000 00000001111112234568999999999999999999
Q ss_pred HHhcccC-CeeEEEEeC-CCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeeccCC
Q 029716 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 129 (189)
Q Consensus 74 ~~F~~~G-~v~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~ 129 (189)
++|++|| .|..+++.. ++++|||+|.+.++|.+|++.||+..|. |+.|+|.|++++
T Consensus 139 ~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 139 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999 999999955 6899999999999999999999999999 999999999874
No 64
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=3.3e-20 Score=141.30 Aligned_cols=128 Identities=22% Similarity=0.355 Sum_probs=95.9
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCC--------CCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG--------GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 73 (189)
+.|||..|.|++|+|.++........+....... ..................+.++|||+|||..+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 4689999999999999998664322111000000 00000000011111224557999999999999999999
Q ss_pred HHhcccC-CeeEEEEeC-CCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeeccCC
Q 029716 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 129 (189)
Q Consensus 74 ~~F~~~G-~v~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~ 129 (189)
++|++|| .|..+++.. ++++|||+|.+.++|++|++.||+..|. |+.|+|.|++++
T Consensus 170 ~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999 999999954 7899999999999999999999999999 999999999874
No 65
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=3.5e-20 Score=125.40 Aligned_cols=82 Identities=30% Similarity=0.600 Sum_probs=73.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
........++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.||+..|+|+.|+|.|++
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34456678999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7654
No 66
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=120.86 Aligned_cols=77 Identities=31% Similarity=0.690 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999865 489999999999999999999999999999999999
Q ss_pred cCC
Q 029716 127 RNP 129 (189)
Q Consensus 127 ~~~ 129 (189)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 67
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=124.86 Aligned_cols=83 Identities=33% Similarity=0.542 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCce-eCCeeEEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQSVRL 123 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l~v 123 (189)
.....++|||+|||+.+++++|+++|++ ||.|..|.|+.+ ++||||+|.+.++|++|++.||+.. |+|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3456799999999999999999999999 999999999875 6899999999999999999999999 99999999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
.+++++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998765443
No 68
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.9e-20 Score=119.80 Aligned_cols=78 Identities=21% Similarity=0.423 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
....++|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|++|++.||+..|.|+.|+|.++++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 45778999999999999999999999999999999984 5999999999999999999999999999999999987644
No 69
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=9.1e-21 Score=124.44 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhc-CceeCCeeEEEeec
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLN-GTVIGKQSVRLSWG 126 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~-g~~~~g~~l~v~~a 126 (189)
+++|||+|||.++|+++|+++|++|| .|.+|+|+++ +|||||+|.+.++|++|++.++ +..|+|+.|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999998764 5899999999999999999874 56799999999999
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
+++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.8e-20 Score=119.61 Aligned_cols=76 Identities=28% Similarity=0.626 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
..+.++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999998653 68999999999999999999999999999999999
Q ss_pred cc
Q 029716 126 GR 127 (189)
Q Consensus 126 a~ 127 (189)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 71
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=2.6e-20 Score=134.65 Aligned_cols=98 Identities=29% Similarity=0.521 Sum_probs=88.5
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|++|+|.++.+.... ...++|||+|||..+++++|+++|++||.
T Consensus 63 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 63 KVLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp HHHTTCEETTEECEEEECCCCSST---------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSC
T ss_pred HhcCCCEeCCcEEEEEecCCCccc---------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCc
Confidence 468999999999999999876322 35689999999999999999999999999
Q ss_pred eeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeec
Q 029716 82 IASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWG 126 (189)
Q Consensus 82 v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 126 (189)
|..+.+.+++ ++|||+|.+.++|.+|++.||+..|.| ++|+|.||
T Consensus 116 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 116 IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999988653 899999999999999999999999987 99999986
No 72
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=125.65 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=75.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
........++|||+|||..+++++|+++|++||.|..+++..+ ++||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445667899999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred eeccCC
Q 029716 124 SWGRNP 129 (189)
Q Consensus 124 ~~a~~~ 129 (189)
++++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999875
No 73
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=124.51 Aligned_cols=77 Identities=30% Similarity=0.551 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+++++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999987 899999999999999999999999999999999999976643
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=119.84 Aligned_cols=78 Identities=33% Similarity=0.576 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
..++|||+|||.++++++|+++|++||.|..+.+.. .++||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999998854 4689999999999999999999999999999999999
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 75
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=7.5e-20 Score=121.42 Aligned_cols=81 Identities=28% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCCCCCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 48 QSEGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
........++|||+|||. .+++++|+++|+.||.|..+.+. ++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 344566789999999998 99999999999999999999985 799999999999999999999999999999999999
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=125.27 Aligned_cols=82 Identities=26% Similarity=0.528 Sum_probs=74.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+......++|||+|||..+++++|+++|+.||.|..|.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 334556789999999999999999999999999999999764 58999999999999999999999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|+||+++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998654
No 77
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=3e-20 Score=135.43 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=89.2
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v 82 (189)
+|||..|.|++|+|.++..+... .....++|||+|||..+++++|+++|++||.|
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~-------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSK-------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCS-------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred hcCCCEeCCeEEEEecCCCcccc-------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 48999999999999999876433 13467899999999999999999999999999
Q ss_pred eEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 83 ASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 83 ~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
..+ .. ..++||||+|.+.++|.+|++.|||..|+|+.|+|.||+++
T Consensus 127 ~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 127 RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 877 21 24699999999999999999999999999999999999875
No 78
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=120.72 Aligned_cols=79 Identities=35% Similarity=0.509 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999754 479999999999999999999999999999999
Q ss_pred eeccC
Q 029716 124 SWGRN 128 (189)
Q Consensus 124 ~~a~~ 128 (189)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.3e-19 Score=121.37 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|+.|| |..|.|+.+ ++||||+|.+.++|++|+ .||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455679999999999999999999999996 999999865 479999999999999999 79999999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999976544
No 80
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=5.9e-20 Score=121.57 Aligned_cols=78 Identities=22% Similarity=0.470 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
++++|||+|||..+++++|+++|++||.|..+++..+ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999765 6899999999999999999999999999999999999
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=7e-20 Score=123.29 Aligned_cols=83 Identities=22% Similarity=0.463 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCcee---CCee
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI---GKQS 120 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 120 (189)
......++|||+|||..+++++|+++|++||.|..|+|+.+ ++||||+|.+.++|++|++.||+..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567789999999999999999999999999999999874 58999999999999999999999998 8999
Q ss_pred EEEeeccCCCCC
Q 029716 121 VRLSWGRNPANK 132 (189)
Q Consensus 121 l~v~~a~~~~~~ 132 (189)
|+|.+++++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999976543
No 82
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=6.2e-20 Score=124.38 Aligned_cols=83 Identities=22% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+......++|||+|||..+++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567789999999999999999999999999999999765 58999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 029716 123 LSWGRNPAN 131 (189)
Q Consensus 123 v~~a~~~~~ 131 (189)
|.|++++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987553
No 83
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=2.5e-20 Score=140.03 Aligned_cols=115 Identities=21% Similarity=0.427 Sum_probs=93.6
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.||+..|.|++|+|.++........... .........++|||+|||..+++++|+++|++||.
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSNIGQAQPIID----------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSCCGGGHHHHH----------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred HHccCCeeCCeeEEEecCCCccccchhhh----------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 46899999999999998876542210000 00011245689999999999999999999999999
Q ss_pred eeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCC
Q 029716 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (189)
Q Consensus 82 v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (189)
|..+++..+ ++||||+|.+.++|.+|++.||+..|+|+.|+|.|++++...
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 999999875 589999999999999999999999999999999999976543
No 84
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=127.63 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
...++|||+|||..+++++|+++|++||.|..|.|..+++||||+|.+.++|++|++.||+..|.|+.|+|.||+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999998643
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=123.18 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHhcccCCeeEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCceeCC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGK 118 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~---~~F~~~G~v~~~~~~~~~---------g~afV~f~~~~~a~~A~~~l~g~~~~g 118 (189)
.....++|||+|||+.+++++|+ ++|++||+|.++.|.+++ +||||+|.+.++|++|++.||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998653 699999999999999999999999999
Q ss_pred eeEEEeeccCCC
Q 029716 119 QSVRLSWGRNPA 130 (189)
Q Consensus 119 ~~l~v~~a~~~~ 130 (189)
+.|+|.||+++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999999765
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1e-19 Score=124.85 Aligned_cols=79 Identities=27% Similarity=0.503 Sum_probs=72.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.......++|||+|||+++++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567799999999999999999999999999999999865 58999999999999999999999999999999
Q ss_pred Eeecc
Q 029716 123 LSWGR 127 (189)
Q Consensus 123 v~~a~ 127 (189)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 87
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=6.8e-20 Score=135.68 Aligned_cols=108 Identities=19% Similarity=0.360 Sum_probs=85.0
Q ss_pred cCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee
Q 029716 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (189)
Q Consensus 4 mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~ 83 (189)
+++..|.|+.|+|.++....... ........++|||+|||..+++++|+++|+.||.|.
T Consensus 74 ~~~~~~~g~~l~v~~~~~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 74 ARPHKVDGRVVEPKRAVSREDSQ---------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp TCSCEETTEECEEEECCC--------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCEECCEEeeeecccCccccc---------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 47899999999999988764331 112234568999999999999999999999999999
Q ss_pred EEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCCCC
Q 029716 84 SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (189)
Q Consensus 84 ~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (189)
.+.+..+ ++||||+|.+.++|++|++. ++..|+|+.|.|.+|.++....
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9999865 58999999999999999985 8999999999999999876543
No 88
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=119.66 Aligned_cols=79 Identities=19% Similarity=0.476 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
.....++|||+|||+.+++++|+++|+.||.|. +.++ ..++||||+|.+.++|++|++.||+..|+|+.|+|+++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 445678999999999999999999999999985 4444 4589999999999999999999999999999999999987
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 89
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=4.3e-20 Score=125.38 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....++|||+|||+++++++|+++|++|| +|..+.+.. .+|||||+|.+.++|++||+.||+..|+|+.|+|++++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44678999999999999999999999999 999998863 579999999999999999999999999999999999985
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 90
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=4.6e-20 Score=121.01 Aligned_cols=80 Identities=30% Similarity=0.488 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
....++|||+|||..+++++|+++|++||.|..+.+.++ ++||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999998863 5899999999999999999999999999999999998
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=121.23 Aligned_cols=79 Identities=30% Similarity=0.436 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
......++|||+|||+.+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34557799999999999999999999999999999999875 5899999999999999999999999999999999
Q ss_pred eccC
Q 029716 125 WGRN 128 (189)
Q Consensus 125 ~a~~ 128 (189)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=2.8e-19 Score=123.72 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4566789999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
|.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876544
No 93
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=124.33 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=74.5
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCcee-----CCeeEEEe
Q 029716 52 DSSNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI-----GKQSVRLS 124 (189)
Q Consensus 52 ~~~~~~l~v--~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-----~g~~l~v~ 124 (189)
..++++||| +||++.+++++|+++|++||+|..|.+..+++||||+|.+.++|++|++.|||++| .++.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 345788999 77999999999999999999999999998999999999999999999999999998 68899999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
|++......
T Consensus 102 ~a~~~p~~~ 110 (114)
T 2cq2_A 102 FVEKVQWSG 110 (114)
T ss_dssp EESCCCCSS
T ss_pred ecccCcccC
Confidence 998655443
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=7.6e-20 Score=127.58 Aligned_cols=82 Identities=33% Similarity=0.506 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.....+.++|||+|||..+++++|+++|++||.|..|+|..+ ++||||+|.+.++|++||+.||+..|+|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567789999999999999999999999999999999864 58999999999999999999999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|+|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 95
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=121.64 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC--eeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCc----eeCCe
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIGKQ 119 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~--v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~----~~~g~ 119 (189)
...-.+|||+|||+++|+++|+++|++||. |.+|+++++ +|||||+|.+.++|++|++.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345679999999999999999999999995 678888764 589999999999999999999997 58999
Q ss_pred eEEEeeccC
Q 029716 120 SVRLSWGRN 128 (189)
Q Consensus 120 ~l~v~~a~~ 128 (189)
.|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 96
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=9.6e-20 Score=121.20 Aligned_cols=80 Identities=30% Similarity=0.472 Sum_probs=73.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhcC
Q 029716 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNG 113 (189)
Q Consensus 48 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~~~~~------~g~afV~f~~~~~a~~A~~~l~g 113 (189)
........++|||+|||.++++++|+++|++||.|.. +++..+ +|||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3455677899999999999999999999999999999 888765 47999999999999999999999
Q ss_pred ceeCCeeEEEeecc
Q 029716 114 TVIGKQSVRLSWGR 127 (189)
Q Consensus 114 ~~~~g~~l~v~~a~ 127 (189)
..|.|+.|+|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 97
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.5e-20 Score=122.18 Aligned_cols=80 Identities=28% Similarity=0.437 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 51 GDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
...+.++|||+|||+ .+++++|+++|++||.|..+.+. ++||||+|.+.++|++|++.||+..+.|+.|+|.++++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 345789999999998 99999999999999999999986 799999999999999999999999999999999999876
Q ss_pred CCC
Q 029716 130 ANK 132 (189)
Q Consensus 130 ~~~ 132 (189)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 98
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=5.1e-20 Score=132.75 Aligned_cols=98 Identities=32% Similarity=0.622 Sum_probs=87.4
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|++|+|.++.+.... ...++|||+|||..+++++|+++|++||.
T Consensus 62 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 62 NTLNGLRLQTKTIKVSYARPSSAS---------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp HHHTTCEETTEECEEEECCCCCGG---------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCccCCceEEEEecCCCccc---------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 468999999999999999876322 24678999999999999999999999999
Q ss_pred eeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCee--EEEeec
Q 029716 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS--VRLSWG 126 (189)
Q Consensus 82 v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~a 126 (189)
|..+.+..+ +++|||+|.+.++|.+|++.|||..|.|+. |+|+||
T Consensus 115 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 115 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999998764 589999999999999999999999999964 888886
No 99
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.82 E-value=5.6e-20 Score=125.76 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCee-----EEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-----VRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-----l~v~~a 126 (189)
....++|||+|||+++++++|+++|++||+|..|.|+.+ +||||+|.+.++|++||+.||+.+|+|+. |+|..+
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 346789999999999999999999999999999999887 99999999999999999999999999988 777777
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
.+...
T Consensus 92 ~~~~~ 96 (115)
T 3beg_B 92 GPRSP 96 (115)
T ss_dssp C----
T ss_pred CCCCC
Confidence 66443
No 100
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-19 Score=118.93 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
......++|||+|||..+++++|+++|++||.|.-+... ..++||||+|.+.++|++|++.||+..|.|+.|+|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345678999999999999999999999999988322111 136999999999999999999999999999999999998
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=123.85 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||..+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++||+. ++..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 445689999999999999999999999999999999875 58999999999999999997 99999999999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
++++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9976543
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.3e-20 Score=130.41 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
..++|||+|||.++++++|+++|++||.|..|.+..+ ++||||+|.+.++|++|+ .||+..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999998754 689999999999999999 799999999999999998
Q ss_pred CCCCC
Q 029716 128 NPANK 132 (189)
Q Consensus 128 ~~~~~ 132 (189)
+....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 65443
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=122.86 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+......++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567789999999999999999999999999999998754 58999999999999999999999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 104
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=121.49 Aligned_cols=83 Identities=27% Similarity=0.492 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v----~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|+.||.| ..+++.. .++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999998 5666554 36999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 029716 125 WGRNPANKQ 133 (189)
Q Consensus 125 ~a~~~~~~~ 133 (189)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999866543
No 105
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=7.5e-19 Score=121.29 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcE-EEEEecCHHHHHHHHHHhcCceeCC--eeEEEeeccCCCC
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPAN 131 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 131 (189)
...|||+||++.+++++|+++|++||+|.+|.|....|| |||+|.+.++|++|++.|||..|.| +.|+|.||+++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 345789999999999999999999999999988765686 9999999999999999999999977 6999999998765
Q ss_pred CC
Q 029716 132 KQ 133 (189)
Q Consensus 132 ~~ 133 (189)
..
T Consensus 105 ~v 106 (124)
T 2e5i_A 105 NV 106 (124)
T ss_dssp CC
T ss_pred ee
Confidence 43
No 106
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=4.7e-20 Score=138.36 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=89.3
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCC------CCCCCCCC----CCCCCCCCCCCeEEEcCCCCCCCHH
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY------ASNGAPGQ----GPQSEGDSSNTTIFVGGLDPNVTDE 70 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~l~v~nl~~~~~~~ 70 (189)
|++|||..|.|++|+|.++..+............... ........ ........+.++|||+|||+++|++
T Consensus 59 i~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 59 ITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred HHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 4579999999999999998765322110000000000 00000000 0011123457899999999999999
Q ss_pred HHHHHhcccCCe--eEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCceeCCe----eEEEeec
Q 029716 71 DLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ----SVRLSWG 126 (189)
Q Consensus 71 ~l~~~F~~~G~v--~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~v~~a 126 (189)
+|+++|++||.| .++++..+ +++|||+|.+.++|.+||..||+..|.+. ++.|+||
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999 89988765 48999999999999999999999999876 5777765
No 107
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.81 E-value=7.6e-20 Score=143.20 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=94.4
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHhcccC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYG 80 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~F~~~G 80 (189)
+.|||..|.|++|+|.++.++... ......++|||+|||..+ ++++|+++|+.||
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCC------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred HHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 478999999999999999876432 223567899999999995 9999999999999
Q ss_pred CeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 81 ~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
.|..+.+..+ +++|||+|.+.++|.+|++.|||..|.|+.|+|.|++++..
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999998875 68999999999999999999999999999999999987665
No 108
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=121.45 Aligned_cols=82 Identities=29% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+. ++..|.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999999875 47999999999999999998 999999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
++++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999976644
No 109
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=120.80 Aligned_cols=80 Identities=28% Similarity=0.374 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999976655432 5899999999999999999999999999999999
Q ss_pred eccCCC
Q 029716 125 WGRNPA 130 (189)
Q Consensus 125 ~a~~~~ 130 (189)
+++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 998654
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=119.98 Aligned_cols=79 Identities=29% Similarity=0.568 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCee-EEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCee----
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQS---- 120 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~---- 120 (189)
....++|||+|||..+++++|+++|++||.|. .++++.++ +||||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 99998653 89999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 029716 121 VRLSWGRNPA 130 (189)
Q Consensus 121 l~v~~a~~~~ 130 (189)
|+|.||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998654
No 111
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2.3e-19 Score=120.97 Aligned_cols=78 Identities=21% Similarity=0.427 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
......++|||+|||..+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999854 6899999999999999999999999999999999
Q ss_pred ecc
Q 029716 125 WGR 127 (189)
Q Consensus 125 ~a~ 127 (189)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-20 Score=126.10 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||..+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++|| .||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3345689999999999999999999999999999999753 589999999999999999 899999999999999
Q ss_pred eccCCCC
Q 029716 125 WGRNPAN 131 (189)
Q Consensus 125 ~a~~~~~ 131 (189)
+++++..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9986543
No 113
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-19 Score=120.01 Aligned_cols=81 Identities=17% Similarity=0.454 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCcee--------
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI-------- 116 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~-------- 116 (189)
......++|||+|||..+++++|+++|+.||.|..++|..+ ++||||+|.+.++|++|++.||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456789999999999999999999999999999999875 58999999999999999999999999
Q ss_pred CCeeEEEeeccCCC
Q 029716 117 GKQSVRLSWGRNPA 130 (189)
Q Consensus 117 ~g~~l~v~~a~~~~ 130 (189)
.++.|.|.||+++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57789999998653
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=1.7e-19 Score=119.37 Aligned_cols=80 Identities=23% Similarity=0.514 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
..+.++|||+|||..+++++|+ ++|++||.|..|.+.. .++||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567999999999999999999 9999999999998873 47999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029716 125 WGRNPAN 131 (189)
Q Consensus 125 ~a~~~~~ 131 (189)
|++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9998654
No 115
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=116.85 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++|++ ++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34566789999999999999999999999999999999765 4799999999999999999 477999999999
Q ss_pred eeccCCCCC
Q 029716 124 SWGRNPANK 132 (189)
Q Consensus 124 ~~a~~~~~~ 132 (189)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999976543
No 116
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=3.4e-19 Score=116.08 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
...++|||+|||+.+++++|+++|++| +|..+++...++||||+|.+.++|++|++.||+..++|+.|+|+|+....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 357899999999999999999999999 99999998888999999999999999999999999999999999997644
No 117
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=124.56 Aligned_cols=81 Identities=17% Similarity=0.424 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
...+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34567899999999999998865 7999999999998864 4799999999999999999999999999999999
Q ss_pred eeccCCCC
Q 029716 124 SWGRNPAN 131 (189)
Q Consensus 124 ~~a~~~~~ 131 (189)
.||+.+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99997654
No 118
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=119.77 Aligned_cols=81 Identities=20% Similarity=0.386 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEe-------CCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeE
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANRENAEEALHKLN--GTVIGKQSV 121 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~-v~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l 121 (189)
....++|||+|||..+++++|+++|+.||. |..+.++ ..++||||+|.+.++|++|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999988 357999999999999999999996 589999999
Q ss_pred EEeeccCCCCC
Q 029716 122 RLSWGRNPANK 132 (189)
Q Consensus 122 ~v~~a~~~~~~ 132 (189)
+|.||++....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999976543
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2.5e-19 Score=129.96 Aligned_cols=85 Identities=22% Similarity=0.486 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+......++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999999865 58999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 029716 123 LSWGRNPANKQ 133 (189)
Q Consensus 123 v~~a~~~~~~~ 133 (189)
|.|+++.....
T Consensus 146 V~~a~~~~~~~ 156 (165)
T 1rk8_A 146 VDWCFVKGPKR 156 (165)
T ss_dssp EEESEECC---
T ss_pred EEEecCCCCCC
Confidence 99998766543
No 120
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.3e-19 Score=116.14 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
..++|||+|||.++++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|+ .||+..|.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999998764 689999999999999999 899999999999999998
Q ss_pred CCC
Q 029716 128 NPA 130 (189)
Q Consensus 128 ~~~ 130 (189)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 121
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=9e-19 Score=144.96 Aligned_cols=83 Identities=22% Similarity=0.451 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||+.+|+++|.++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 029716 126 GRNPANKQF 134 (189)
Q Consensus 126 a~~~~~~~~ 134 (189)
+++.....+
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 997665443
No 122
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=2.1e-19 Score=141.18 Aligned_cols=107 Identities=23% Similarity=0.515 Sum_probs=90.8
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhcccC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYG 80 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G 80 (189)
+.|||..|.|++|+|.++.+....... .......++|||+|||.. +++++|+++|+.||
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 458999999999999999876443200 123456789999999999 99999999999999
Q ss_pred CeeEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 81 EIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 81 ~v~~~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.|..+++..+ ++||||+|.+.++|.+|+ .||+..|.|+.|+|.||+++
T Consensus 237 ~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 237 SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999998653 589999999999999999 99999999999999999875
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.5e-20 Score=120.77 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=65.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
.+|||+|||+++++++|+++|++|| .|.+++++.+ +|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999998765 4899999999999999999999999999999999999
Q ss_pred CCCCC
Q 029716 128 NPANK 132 (189)
Q Consensus 128 ~~~~~ 132 (189)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 124
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-19 Score=114.95 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||+++++++|+++|+.| .|..++|+.+ ++||||+|.+.++|++|++ ||+..|.|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567999999999999999999999999 9999998865 5899999999999999999 9999999999999999
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
+++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8754
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-20 Score=123.22 Aligned_cols=81 Identities=31% Similarity=0.557 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||..+++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999998865 58999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029716 126 GRNPANK 132 (189)
Q Consensus 126 a~~~~~~ 132 (189)
++++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9976654
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=125.31 Aligned_cols=83 Identities=19% Similarity=0.436 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--EEEeCC------CcEEEEEecCHHHHHHHHHHhcCc----ee
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANRENAEEALHKLNGT----VI 116 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~----~~ 116 (189)
+......++|||+|||+++++++|+++|++||.|.. |+|+++ +|||||+|.+. +|++|++.||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567789999999999999999999999999966 888765 58999999999 999999999999 99
Q ss_pred CCeeEEEeeccCCCCC
Q 029716 117 GKQSVRLSWGRNPANK 132 (189)
Q Consensus 117 ~g~~l~v~~a~~~~~~ 132 (189)
+|+.|+|+++++....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 127
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=114.66 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCc-EEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
...++|||+|||+++++++|+++|+.||.|..|.+.+..+ ||||+|.+.++|++|++ ||+..|+|+.|+|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999983333222 99999999999999999 999999999999999876554
Q ss_pred C
Q 029716 132 K 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 128
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=122.45 Aligned_cols=78 Identities=27% Similarity=0.598 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.......++|||+|||..+++++|+++|++||.|..++++.+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999765 68999999999999999999999999999999
Q ss_pred Eeec
Q 029716 123 LSWG 126 (189)
Q Consensus 123 v~~a 126 (189)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 129
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=115.62 Aligned_cols=83 Identities=28% Similarity=0.463 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
......++|||+|||..+++++|+++|+.|+.|..+.... .++||||+|.+.++|++||+.||+..|.|+.|+|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3456789999999999999999999999885433322111 1489999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 975543
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.1e-18 Score=125.48 Aligned_cols=82 Identities=27% Similarity=0.529 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||+++++++|+++|+.||.|..|.|..+ +|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999864 5899999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029716 125 WGRNPANK 132 (189)
Q Consensus 125 ~a~~~~~~ 132 (189)
|+++....
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99976543
No 131
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.1e-19 Score=113.64 Aligned_cols=75 Identities=23% Similarity=0.512 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ ++||||+|.+.++|++|++ +++..|+|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999764 5799999999999999997 68899999999999
Q ss_pred ec
Q 029716 125 WG 126 (189)
Q Consensus 125 ~a 126 (189)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=122.87 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v-~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
.....++|||+|||+.+++++|+++|+.||.| ..|+|+. .++||||+|.+.++|++||+. |+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 7888876 369999999999999999996 9999999999999
Q ss_pred eccCCC
Q 029716 125 WGRNPA 130 (189)
Q Consensus 125 ~a~~~~ 130 (189)
++.+..
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998654
No 133
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2.6e-19 Score=125.84 Aligned_cols=84 Identities=26% Similarity=0.518 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556789999999999999999999999999999999764 579999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 029716 124 SWGRNPANKQ 133 (189)
Q Consensus 124 ~~a~~~~~~~ 133 (189)
.|+++.....
T Consensus 122 ~~a~~~~~~~ 131 (135)
T 2lea_A 122 QMARYGRPPD 131 (135)
T ss_dssp EECCCCCCCT
T ss_pred EECCCCCCCc
Confidence 9999765443
No 134
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=118.27 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=70.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.......++|||+|||..+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|++|++.+ +..|+|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445567899999999999999999999999999999999865 589999999999999999976 5999999999
Q ss_pred EeeccCCCCC
Q 029716 123 LSWGRNPANK 132 (189)
Q Consensus 123 v~~a~~~~~~ 132 (189)
|.++.++..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999976543
No 135
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=116.70 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999875 589999999999999999999999999999988776
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=118.69 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||+++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++ +++..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 446789999999999999999999999999999999874 6999999999999999999 9999999999999998
Q ss_pred cC
Q 029716 127 RN 128 (189)
Q Consensus 127 ~~ 128 (189)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 137
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.78 E-value=7.6e-19 Score=121.17 Aligned_cols=80 Identities=26% Similarity=0.495 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
.....++|||+|| ++++++|+++|++||.|..|.+...++||||+|.+.++|++|++.||+..|.|+.|+|.|++++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3456889999995 69999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CC
Q 029716 131 NK 132 (189)
Q Consensus 131 ~~ 132 (189)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=118.17 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCceeCCe-e
Q 029716 52 DSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-S 120 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~------~~~~l~~~F~~~G~v~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~ 120 (189)
....++|||+|||..+ ++++|+++|++||.|..|.|.+ .+|||||+|.+.++|++|++.|||..|.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4457899999999999 7899999999999999999874 369999999999999999999999999998 9
Q ss_pred EEEeeccCCC
Q 029716 121 VRLSWGRNPA 130 (189)
Q Consensus 121 l~v~~a~~~~ 130 (189)
|+|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999998543
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=115.87 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||+.+++++|+++|+.||.|.. +.|+.+ +|||||+|.+.++|++||+. ++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456789999999999999999999999999987 777643 69999999999999999996 999999999999
Q ss_pred eeccCCC
Q 029716 124 SWGRNPA 130 (189)
Q Consensus 124 ~~a~~~~ 130 (189)
.++.+..
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987654
No 140
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=119.50 Aligned_cols=80 Identities=28% Similarity=0.499 Sum_probs=68.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
.......++|||+|||.++++++|+++|+.|| |..|.|..+ +|||||+|.+.++|++|+ .||+..|+|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556789999999999999999999999999 999999764 589999999999999999 799999999999
Q ss_pred EEeeccCCC
Q 029716 122 RLSWGRNPA 130 (189)
Q Consensus 122 ~v~~a~~~~ 130 (189)
+|+++++..
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998753
No 141
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.3e-19 Score=120.96 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCC-ee
Q 029716 54 SNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK-QS 120 (189)
Q Consensus 54 ~~~~l~v~nl~~------~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~ 120 (189)
..++|||+|||. .+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999998753 5899999999999999999999999999 99
Q ss_pred EEEeeccCC
Q 029716 121 VRLSWGRNP 129 (189)
Q Consensus 121 l~v~~a~~~ 129 (189)
|+|.+|.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 142
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.1e-18 Score=125.38 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CcEEEEEecCHHHHHHHHHHhcCceeCC--eeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~ 127 (189)
.....+|||+||++.+|+++|+++|++||+|++|.|..+ ++||||+|.+.++|++|++.|||..|.+ +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 345678999999999999999999999999999998643 5799999999999999999999999965 999999999
Q ss_pred CCCCC
Q 029716 128 NPANK 132 (189)
Q Consensus 128 ~~~~~ 132 (189)
++...
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 87543
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=9.4e-19 Score=119.44 Aligned_cols=79 Identities=18% Similarity=0.391 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....++|||+|||..+++++|+++|+.||.|..|.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346789999999999999999999999999999999764 68999999999999999999999999999999999986
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
..
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 44
No 144
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.7e-18 Score=120.09 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-CCcE-EEEEecCHHHHHHHHHHhcCceeCC--eeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~-~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~ 127 (189)
......|||+||++.+|+++|+++|++||+|.+|.+.. .++| |||+|.+.++|++|++.|||..|.+ +.|+|+|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 34556889999999999999999999999999998865 3577 9999999999999999999999987 899999999
Q ss_pred CCCCCCCC
Q 029716 128 NPANKQFR 135 (189)
Q Consensus 128 ~~~~~~~~ 135 (189)
+.......
T Consensus 105 ~~~l~v~~ 112 (130)
T 3zzy_A 105 LTSLNVKY 112 (130)
T ss_dssp CSSCCCCC
T ss_pred CCceeEEe
Confidence 87654433
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=114.33 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE-EeCCC--cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-IPVGK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~-~~~~~--g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
....++|||+|||+.+++++|+++|+.||.|..++ ++.++ +.|||+|.+.++|++|++.||+..|+|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 77654 5599999999999999999999999999999999997
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=126.45 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.+ +|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999765 58999999999999999999999999999999999
Q ss_pred ccCC
Q 029716 126 GRNP 129 (189)
Q Consensus 126 a~~~ 129 (189)
|.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=6.3e-19 Score=128.01 Aligned_cols=100 Identities=22% Similarity=0.503 Sum_probs=85.0
Q ss_pred CccCCceec---CcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc
Q 029716 2 TEMNGVYCS---SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ 78 (189)
Q Consensus 2 ~~mnG~~l~---gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~ 78 (189)
+.||+..+. +++|.|.++...... ....++|||+|||..+++++|+++|++
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 65 NALHNMKVLPGMHHPIQMKPADSEKNN--------------------------AVEDRKLFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp HHHTTTCCCTTCSSCCEEEECGGGCCS--------------------------CGGGSEEEEESCCTTCCHHHHHHHHGG
T ss_pred HHhcCcEEccCCccceEEccccccccc--------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHh
Confidence 457887775 678888777655322 235689999999999999999999999
Q ss_pred cCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeC---CeeEEEeecc
Q 029716 79 YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSVRLSWGR 127 (189)
Q Consensus 79 ~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 127 (189)
||.|..+.+.++ ++||||+|.+.++|.+|++.|||..+. ++.|+|.||.
T Consensus 119 ~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999875 689999999999999999999998875 4899999984
No 148
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=3.6e-19 Score=117.37 Aligned_cols=77 Identities=26% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||+.+++++|+++|++||.|..+.++. .++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999998766654 258999999999999999999999999999999999
Q ss_pred ccC
Q 029716 126 GRN 128 (189)
Q Consensus 126 a~~ 128 (189)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=114.10 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
.....++|||+|||..+++++|+++|+.||.|..+ ... .++||||+|.+.++|++|++.|++..|.|+.|+|.++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999988777 222 368999999999999999999999999999999999987
Q ss_pred CCC
Q 029716 129 PAN 131 (189)
Q Consensus 129 ~~~ 131 (189)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 150
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=115.44 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||+++|+++|+++|++||. ..|+|+.+ ++||||+|.+.++|++||+ +|+..|+++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456789999999999999999999999995 48888754 5899999999999999995 899999999999999
Q ss_pred ccCCC
Q 029716 126 GRNPA 130 (189)
Q Consensus 126 a~~~~ 130 (189)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88654
No 151
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=2e-18 Score=111.89 Aligned_cols=72 Identities=22% Similarity=0.476 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~----G-------~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
...++|||+|||.++++++|+++|++| | .|.++.+.++++||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 9999999999999999999999999999 899999999999
Q ss_pred EEee
Q 029716 122 RLSW 125 (189)
Q Consensus 122 ~v~~ 125 (189)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=110.98 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=66.8
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhccc-CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTT-IFVGGLDPNVTDED----LRQPFSQY-GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~-l~v~nl~~~~~~~~----l~~~F~~~-G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
++.+ |||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|+|..|.|+.|+|.||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 3444 99999999999887 66899999 4999982 3999999999999999999999999999999999999
Q ss_pred CCCCC
Q 029716 128 NPANK 132 (189)
Q Consensus 128 ~~~~~ 132 (189)
..+.-
T Consensus 83 ~~sd~ 87 (96)
T 2diu_A 83 KNREL 87 (96)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 87653
No 153
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.76 E-value=9.6e-19 Score=133.44 Aligned_cols=80 Identities=28% Similarity=0.583 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCcee------
Q 029716 52 DSSNTTIFVGGLDPNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI------ 116 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~---------~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~------ 116 (189)
....++|||+||+..+ ++++|+++|++||+|.+|+|+.+++||||+|.+.++|+.|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5578999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeeEEEeeccCCCC
Q 029716 117 ------GKQSVRLSWGRNPAN 131 (189)
Q Consensus 117 ------~g~~l~v~~a~~~~~ 131 (189)
.|+.|.|.||+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987554
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-18 Score=112.62 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-----EEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-----VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||.++++++|+++|+.||.|.. ......++||||+|.+.++|++|++ ||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 446789999999999999999999999997765 2223457999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 875543
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=5.1e-18 Score=110.77 Aligned_cols=78 Identities=35% Similarity=0.506 Sum_probs=62.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCce--eCCeeEEEeec
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWG 126 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v~~a 126 (189)
....+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++ +++.. +.++.|.|.+|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 34567899999999999999999999999999999999875 8999999999999883 55655 46999999999
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
+++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87653
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=111.93 Aligned_cols=78 Identities=32% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
...++|||+|||.++++++|+++|++||.|..++++.+ ++||||+|.+.++|++|+.. ...+.++.|+|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35799999999999999999999999999999999865 89999999999999764331 2345899999999987654
Q ss_pred C
Q 029716 132 K 132 (189)
Q Consensus 132 ~ 132 (189)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 157
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.2e-18 Score=109.94 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
+|||+|||+++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++ |++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999998764 4899999999999999998 9999999999999986
No 158
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=4e-18 Score=117.03 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~---v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+ +|||||+|.+.++|++||+ ||+..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 888888754 5899999999999999999 9999999999999
Q ss_pred eeccCCC
Q 029716 124 SWGRNPA 130 (189)
Q Consensus 124 ~~a~~~~ 130 (189)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997543
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=7.1e-18 Score=126.49 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 54 SNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 54 ~~~~l~v~nl~-~~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
+.++|||+||+ +.+++++|+++|++||.|.+|+++++ +|||||+|.+.++|++||+.|||..|.|+.|+|.+++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 56899999999 89999999999999999999999886 6999999999999999999999999999999999998654
No 160
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=3.6e-19 Score=116.28 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.+ |++|++.||+..|+|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999764 589999999999 99999999999999999999999875
Q ss_pred CC
Q 029716 130 AN 131 (189)
Q Consensus 130 ~~ 131 (189)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-20 Score=125.44 Aligned_cols=80 Identities=31% Similarity=0.488 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
..+.++|||+|||..+++++|+++|++||.|.. |.+..+ ++||||+|.+.++|++|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999988 777654 589999999999999999999999999
Q ss_pred CeeEEEeeccCCCC
Q 029716 118 KQSVRLSWGRNPAN 131 (189)
Q Consensus 118 g~~l~v~~a~~~~~ 131 (189)
|+.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987543
No 162
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=119.75 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
....++|||+|||+.+++++|+++|+.||.|..+.++. .+|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 45668999999999999999999999999987633322 26899999999999999999 999999999999999
Q ss_pred ccCCC
Q 029716 126 GRNPA 130 (189)
Q Consensus 126 a~~~~ 130 (189)
+.+..
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97543
No 163
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=110.21 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=66.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999999999875 5899999999999999999999 9999999999987
No 164
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=111.48 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCceeCCe-eEEE
Q 029716 55 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRL 123 (189)
Q Consensus 55 ~~~l~v~nl~~~~------~~~~l~~~F~~~G~v~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v 123 (189)
+++|||+|||..+ ++++|+++|++||.|.++.+.+ .+|||||+|.+.++|++|++.|||..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 6799999999999999999874 369999999999999999999999999999 8876
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=7.1e-19 Score=127.00 Aligned_cols=96 Identities=20% Similarity=0.410 Sum_probs=84.5
Q ss_pred CceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 029716 6 GVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (189)
Q Consensus 6 G~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~ 85 (189)
+..|.|+.|+|.++.++... ...++|||+|||..+++++|+++|++||.|..+
T Consensus 65 ~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 65 QHILDGKVIDPKRAIPRDEQ---------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp CCEETTEECCCEECCCHHHH---------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred ccccCCeEcccccccchhhc---------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 45788999999887765321 245799999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 86 KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 86 ~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
.+..+ +|||||+|.+.++|++|++ +++..|+|+.|+|.||+++
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 98865 4799999999999999998 8999999999999999875
No 166
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=113.28 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||+++++++|+++|+.| .|..|.|+.+ +|||||+|.+.++|++|| .+|+..|+|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 9999999864 689999999999999999 59999999999999888
Q ss_pred cC
Q 029716 127 RN 128 (189)
Q Consensus 127 ~~ 128 (189)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=120.58 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEe---CCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 120 (189)
..+.++|||+|||+.+++++|+++|+.||.|.. +.+. ..++||||+|.+.++|++|++.||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999998865 3322 35799999999999999999999999999999
Q ss_pred EEEeeccCCCCC
Q 029716 121 VRLSWGRNPANK 132 (189)
Q Consensus 121 l~v~~a~~~~~~ 132 (189)
|+|.||++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875543
No 168
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.7e-18 Score=119.91 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~---v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 121 (189)
......++|||+|||+++|+++|+++|+.||. |..|+|+.+ +|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 44556789999999999999999999999999 888888754 5899999999999999999 99999999999
Q ss_pred EEeeccCC
Q 029716 122 RLSWGRNP 129 (189)
Q Consensus 122 ~v~~a~~~ 129 (189)
+|.++.+.
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998643
No 169
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=122.46 Aligned_cols=80 Identities=20% Similarity=0.416 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||+.+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|++|++.||+..|+|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455789999999999999999999999999999999764 58999999999999999999999999999999999
Q ss_pred ccCCC
Q 029716 126 GRNPA 130 (189)
Q Consensus 126 a~~~~ 130 (189)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98654
No 170
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.8e-18 Score=121.93 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||+++|+++|+++|++|| |..|.|+.+ ++||||+|.+.++|++|| .+|+..|+++.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 779988764 689999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 029716 126 GRNPAN 131 (189)
Q Consensus 126 a~~~~~ 131 (189)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 886553
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=1.6e-17 Score=129.88 Aligned_cols=97 Identities=16% Similarity=0.393 Sum_probs=87.5
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|++|+|.++. ..++|||+|||..+++++|+++|+.||.
T Consensus 75 ~~l~~~~~~g~~i~v~~~~---------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 75 NAFHQSRLRERELSVQLQP---------------------------------TDALLCVANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp HHHTTCEETTEECEEEECC---------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCeeCCeEEEEEecC---------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCC
Confidence 5689999999999998742 2379999999999999999999999999
Q ss_pred eeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 82 v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
|..+.++.+ ++||||+|.+.++|.+|++.|++..|.|+.|.|.++.+...
T Consensus 122 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 122 LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999988754 47999999999999999999999999999999999986543
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.72 E-value=1.4e-17 Score=129.12 Aligned_cols=97 Identities=33% Similarity=0.498 Sum_probs=85.7
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|++|+|.++.+ .++|||+|||..+|+++|+++|+.||.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCcEECCceeEeeeccc---------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 46899999999999998753 368999999999999999999999999
Q ss_pred eeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhc-CceeC---CeeEEEeeccCCCC
Q 029716 82 IASVKIPVG-----KGCGFVQFANRENAEEALHKLN-GTVIG---KQSVRLSWGRNPAN 131 (189)
Q Consensus 82 v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~-g~~~~---g~~l~v~~a~~~~~ 131 (189)
|..|.++.+ ++||||+|.+.++|.+|++.|| +..+. ++.|.|.++.+...
T Consensus 123 i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 123 VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 999998765 6899999999999999999995 45554 89999999986543
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=114.18 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~---v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.+ +|||||+|.+.++|++||+ +|+..|+|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3457789999999999999999999999988 889988764 5899999999999999999 999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|.++.+..
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987543
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=3.1e-17 Score=123.52 Aligned_cols=79 Identities=32% Similarity=0.556 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
..+.++|||+|||+++|+++|+++|++||+|.+|+|+++ ++||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345689999999999999999999999999999999864 48999999999999999999999999999999999
Q ss_pred ccCCC
Q 029716 126 GRNPA 130 (189)
Q Consensus 126 a~~~~ 130 (189)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87544
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5.5e-17 Score=116.72 Aligned_cols=78 Identities=35% Similarity=0.612 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~------g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+.++|||+|||.++++++|+++|+.||.|..+.+.+++ +||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999998764 899999999999999999999999999999999998
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6543
No 176
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=5.6e-18 Score=106.79 Aligned_cols=69 Identities=28% Similarity=0.637 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
+|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++ +++..|.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6899999999999999999999999999998764 6899999999999999999 5899999999999886
No 177
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=8.3e-18 Score=112.31 Aligned_cols=78 Identities=28% Similarity=0.514 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
....++|||+|||..+++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++ ++..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 445789999999999999999999999999999999874 5899999999999999999 999999999999999
Q ss_pred cCCCC
Q 029716 127 RNPAN 131 (189)
Q Consensus 127 ~~~~~ 131 (189)
.+...
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 86544
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3e-17 Score=113.66 Aligned_cols=77 Identities=31% Similarity=0.432 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCee--EEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
......++|||+|||+++|+++|+++|+.| .|. .|+|+.+ +|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 344567899999999999999999999999 777 8888764 6999999999999999999 577999999999
Q ss_pred EeeccC
Q 029716 123 LSWGRN 128 (189)
Q Consensus 123 v~~a~~ 128 (189)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998864
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=1.3e-16 Score=123.59 Aligned_cols=80 Identities=30% Similarity=0.590 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
......++|||+|||.++|+++|+++|+.||.|..|.+.++++||||+|.+.++|++|+..|++..|.|+.|+|.++.+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999753
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.3e-16 Score=125.28 Aligned_cols=95 Identities=14% Similarity=0.283 Sum_probs=85.3
Q ss_pred ccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccC-C
Q 029716 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG-E 81 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G-~ 81 (189)
+|||..|.|++|+|.++ ..++|||+|||..+++++|+++|+.|| .
T Consensus 99 ~~~~~~~~g~~i~v~~~----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHL----------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp TTTTCEETTEECEEEEC----------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred HhCCcEeCCcEEEEEEC----------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 48999999999999874 258999999999999999999999999 9
Q ss_pred eeEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 82 IASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 82 v~~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
|..+.+.. .++||||+|.+.++|++|++.|++..|.|+.|.|.++.+...
T Consensus 145 i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999876 369999999999999999999999999999999999987654
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1e-16 Score=115.53 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+.++|||+|||.++++++|+++|+.||.|.++.+.++ ++||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998764 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-16 Score=105.04 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhcccCCeeEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCceeC
Q 029716 51 GDSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 117 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~F~~~G~v~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 117 (189)
...++++|+|.||....+ +++|+++|++||.|.+|.|.. .+|||||+|.+.++|++|++.|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445789999999954432 579999999999999997742 3699999999999999999999999999
Q ss_pred CeeEEEeeccCCCCC
Q 029716 118 KQSVRLSWGRNPANK 132 (189)
Q Consensus 118 g~~l~v~~a~~~~~~ 132 (189)
|+.|+|.++.+....
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1.4e-16 Score=121.20 Aligned_cols=79 Identities=29% Similarity=0.512 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCC
Q 029716 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 52 ~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 129 (189)
....++|||+|||. .+++++|+++|+.||.|.+|++.++ ++||||+|.+.++|++|++.|++..|.|+.|+|.+++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45679999999999 9999999999999999999999987 499999999999999999999999999999999999866
Q ss_pred C
Q 029716 130 A 130 (189)
Q Consensus 130 ~ 130 (189)
.
T Consensus 111 ~ 111 (229)
T 2adc_A 111 N 111 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=112.76 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v----~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+ +|||||+|.+.++|++||+. |+..|+++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999875 57777653 58999999999999999995 999999999999
Q ss_pred eeccCC
Q 029716 124 SWGRNP 129 (189)
Q Consensus 124 ~~a~~~ 129 (189)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=3e-16 Score=122.59 Aligned_cols=80 Identities=24% Similarity=0.506 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~v~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
.....++|||+|||.++++++|+ ++|+.||.|.+|++.+ .++||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35678999999999999999976 8999999999999876 4699999999999999999999999999999999
Q ss_pred eeccCCC
Q 029716 124 SWGRNPA 130 (189)
Q Consensus 124 ~~a~~~~ 130 (189)
.|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997655
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.7e-16 Score=112.20 Aligned_cols=76 Identities=32% Similarity=0.575 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCC
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 130 (189)
++|||+|||.++++++|+++|++||.|.++.+..+ ++||||+|.+.++|++|++.|++..+.|+.|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999765 4899999999999999999999999999999999998655
Q ss_pred C
Q 029716 131 N 131 (189)
Q Consensus 131 ~ 131 (189)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=3.7e-16 Score=115.45 Aligned_cols=81 Identities=25% Similarity=0.454 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
......++|||+|||+++|+++|+++|+.||.|.+|.++.+ ++||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34557889999999999999999999999999999998864 47999999999999999985 999999999999
Q ss_pred eeccCCCC
Q 029716 124 SWGRNPAN 131 (189)
Q Consensus 124 ~~a~~~~~ 131 (189)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99986543
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.7e-16 Score=104.58 Aligned_cols=73 Identities=21% Similarity=0.437 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 123 (189)
...++|||+|||+++++++|+++|++||.|. +.++. .++||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 76653 36899999999999999999884 477777777
Q ss_pred eeccC
Q 029716 124 SWGRN 128 (189)
Q Consensus 124 ~~a~~ 128 (189)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65543
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=8.4e-16 Score=103.20 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhcccCCeeEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 029716 53 SSNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (189)
Q Consensus 53 ~~~~~l~v~nl~~-----~~~~~~l~~~F~~~G~v~~~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 120 (189)
.++++|+|.||.. +-++++|+++|++||.|.++.|.++ +||+||+|.+.++|++|++.|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2367999999999999999998753 689999999999999999999999999999
Q ss_pred EEEeeccC
Q 029716 121 VRLSWGRN 128 (189)
Q Consensus 121 l~v~~a~~ 128 (189)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999974
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=116.81 Aligned_cols=78 Identities=29% Similarity=0.504 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccCCCC
Q 029716 54 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (189)
Q Consensus 54 ~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 131 (189)
..++|||+|||. .+++++|+++|+.||.|.+|++..+ ++||||+|.+.++|++|++.||+..|.|+.|+|.+++....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 468999999999 9999999999999999999999887 59999999999999999999999999999999999987643
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=7.3e-16 Score=111.57 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~----G-------~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
..++|||+|||.++|+++|+++|++| | .|.++.+.++++||||+|.+.++|++|+ .||+..|.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8899999999999999999999999999 7999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|.++....
T Consensus 82 v~~~~~~~ 89 (172)
T 2g4b_A 82 IRRPHDYQ 89 (172)
T ss_dssp EECCSSCC
T ss_pred ecCCcccC
Confidence 99987543
No 192
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=8.4e-16 Score=115.19 Aligned_cols=78 Identities=24% Similarity=0.524 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
...++|||+|||.++++++|+++|+.||.|.+|+++++ ++||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999764 689999999999999999999999999999999988
Q ss_pred cCCC
Q 029716 127 RNPA 130 (189)
Q Consensus 127 ~~~~ 130 (189)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7543
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.3e-15 Score=112.75 Aligned_cols=76 Identities=20% Similarity=0.425 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~----G-------~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
..++|||+|||.++++++|+++|+.| | .|.++.+.++++||||+|.+.++|++|+ .||+..|.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7888999999999999999999999999 7999999999999
Q ss_pred EeeccCCC
Q 029716 123 LSWGRNPA 130 (189)
Q Consensus 123 v~~a~~~~ 130 (189)
|.++....
T Consensus 82 v~~~~~~~ 89 (198)
T 2yh0_A 82 IRRPHDYQ 89 (198)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988654
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.8e-15 Score=112.28 Aligned_cols=75 Identities=17% Similarity=0.365 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
..++|||+|||+.+++++|+++|++||.|..|++.++ +|||||+|.+.++|++|++.+ +..|+|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999998863 699999999999999999855 5699999999999875
Q ss_pred C
Q 029716 129 P 129 (189)
Q Consensus 129 ~ 129 (189)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.5e-15 Score=109.95 Aligned_cols=78 Identities=28% Similarity=0.510 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--------CCcEEEEEecCHHHHHHHHHHhcCceeC---CeeEE
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--------GKGCGFVQFANRENAEEALHKLNGTVIG---KQSVR 122 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 122 (189)
..++|||+|||+++++++|+++|++||.|.++++++ .++||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 468999999999999999999999999999999874 3589999999999999999999998875 67788
Q ss_pred EeeccCCCC
Q 029716 123 LSWGRNPAN 131 (189)
Q Consensus 123 v~~a~~~~~ 131 (189)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888875543
No 196
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1e-15 Score=104.93 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=64.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecC----HHH----HHHHHH--HhcCce
Q 029716 56 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----REN----AEEALH--KLNGTV 115 (189)
Q Consensus 56 ~~l~v~nl----~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~----~~~----a~~A~~--~l~g~~ 115 (189)
+.|||+|| |+.+++++|+++|+.||+|.++.++.| +|||||+|.+ .++ |.+|++ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999999999876 5999999996 323 888888 789999
Q ss_pred eCCeeEEEeeccC
Q 029716 116 IGKQSVRLSWGRN 128 (189)
Q Consensus 116 ~~g~~l~v~~a~~ 128 (189)
|+|+.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.60 E-value=2.8e-15 Score=119.98 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCcee---CCe--eEEE
Q 029716 51 GDSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI---GKQ--SVRL 123 (189)
Q Consensus 51 ~~~~~~~l~v~n--l~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~--~l~v 123 (189)
...++.+|||+| |+..+|+++|+++|++||+|.+|.+..+|+||||+|.+.++|++|++.|||+++ .|+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 356788999999 578899999999999999999999988999999999999999999999999988 244 5777
Q ss_pred eecc
Q 029716 124 SWGR 127 (189)
Q Consensus 124 ~~a~ 127 (189)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7774
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=7.2e-15 Score=106.72 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcccCCe-----eEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-----ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v-----~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
.....++|||+|||.++++++|+++|+.||.+ ........++||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45678999999999999999999999999754 344445578999999999999999995 999999999999999
Q ss_pred ccCCCC
Q 029716 126 GRNPAN 131 (189)
Q Consensus 126 a~~~~~ 131 (189)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987544
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-14 Score=94.49 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhcccCCeeEEEEe-CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q 029716 55 NTTIFVGGLD-------PNVTDEDLRQPFSQYGEIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (189)
Q Consensus 55 ~~~l~v~nl~-------~~~~~~~l~~~F~~~G~v~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 126 (189)
.++|-|.-.. ..+++++|+++|++||+|.+|.|+ ..+|||||+|.+.++|++|++.++ .+.++.|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEc
Confidence 4455555332 458999999999999999999997 457999999999999999999754 468999999999
Q ss_pred cCCCCC
Q 029716 127 RNPANK 132 (189)
Q Consensus 127 ~~~~~~ 132 (189)
+++...
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876543
No 200
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=5.8e-15 Score=106.30 Aligned_cols=74 Identities=23% Similarity=0.542 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
+.++|||+|||.++|+++|+++|+.||.|.++.++++ ++||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999999865 48999999999999999994 578999999999887
Q ss_pred CC
Q 029716 128 NP 129 (189)
Q Consensus 128 ~~ 129 (189)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=1e-14 Score=97.87 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=66.0
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhcccCCeeEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCc
Q 029716 53 SSNTTIFVGGL--DPNVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGT 114 (189)
Q Consensus 53 ~~~~~l~v~nl--~~~~~--------~~~l~~~F~~~G~v~~~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~ 114 (189)
.+++.|.|.|+ +..+. +++|++.|++||.|.++.|+++ +|++||+|.+.++|++|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33333 3689999999999999999764 589999999999999999999999
Q ss_pred eeCCeeEEEeeccC
Q 029716 115 VIGKQSVRLSWGRN 128 (189)
Q Consensus 115 ~~~g~~l~v~~a~~ 128 (189)
.++|+.|+|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=5.2e-15 Score=99.17 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=58.7
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeeEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 60 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 60 v~nl~~~~~~~~l~~~F------------~~~G~v~~~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
+.+|++.+++++|+++| ++||.|.+|.|.++ +|||||+|.+.++|++|++.|||+.++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777777776666 99999999999875 69999999999999999999999999999999
Q ss_pred Eeec
Q 029716 123 LSWG 126 (189)
Q Consensus 123 v~~a 126 (189)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=6.3e-14 Score=95.84 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhcccCCeeEEEEeCC----------CcEEEEEecCHHHHHHHHHHhcCceeCC
Q 029716 54 SNTTIFVGGLDP--NV---TDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANRENAEEALHKLNGTVIGK 118 (189)
Q Consensus 54 ~~~~l~v~nl~~--~~---~~~~l~~~F~~~G~v~~~~~~~~----------~g~afV~f~~~~~a~~A~~~l~g~~~~g 118 (189)
++++|+|.|+-. ++ -+++|++.|++||.|.+|.|+++ +|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 22 35899999999999999998754 3799999999999999999999999999
Q ss_pred eeEEEeeccC
Q 029716 119 QSVRLSWGRN 128 (189)
Q Consensus 119 ~~l~v~~a~~ 128 (189)
+.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=2.1e-13 Score=92.66 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhcccCCeeEEEEeCC--CcEEEEEecCHHHHHHHHHHhcCceeCCee
Q 029716 53 SSNTTIFVGGLDPNV----------TDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~----------~~~~l~~~F~~~G~v~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 120 (189)
.+++.|.|.|+-..- -+++|++.|++||.|.++.|.++ +|++||+|.+.++|++|++.|||..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356788888883321 13588999999999999999875 699999999999999999999999999999
Q ss_pred EEEeecc
Q 029716 121 VRLSWGR 127 (189)
Q Consensus 121 l~v~~a~ 127 (189)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.5e-13 Score=89.84 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC-HHHHHHHHHHhc--CceeCCeeEEEeec
Q 029716 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-RENAEEALHKLN--GTVIGKQSVRLSWG 126 (189)
Q Consensus 51 ~~~~~~~l~v~nl~~~-~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~~~g~~l~v~~a 126 (189)
.....+.|||+||+.. +++++|+++|++||+|..|.+..+...|||+|.+ .++|..|++.|+ +.+|.+..++++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4567899999999999 9999999999999999999999999999999999 899999999995 67789988888764
Q ss_pred c
Q 029716 127 R 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=84.50 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCC----C-CCH---HHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q 029716 53 SSNTTIFVGGLDP----N-VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (189)
Q Consensus 53 ~~~~~l~v~nl~~----~-~~~---~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 124 (189)
++..||+|.-++. + .++ .+|.+.|++||+|..+++..++ +||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4567888876652 2 342 5799999999999999999876 8999999999999999 99999999999999
Q ss_pred eccCC
Q 029716 125 WGRNP 129 (189)
Q Consensus 125 ~a~~~ 129 (189)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99863
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.1e-11 Score=78.82 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCC------CCH---HHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q 029716 52 DSSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~------~~~---~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 122 (189)
-++..||+|.-++.. .++ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+||+ |||..++|+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 456789999877643 332 4689999999999999999877 9999999999999999 999999999999
Q ss_pred EeeccC
Q 029716 123 LSWGRN 128 (189)
Q Consensus 123 v~~a~~ 128 (189)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998653
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.7e-09 Score=70.33 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~-----G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 125 (189)
...++|-+-+||..++++.|+.+.+++ |.+.++.+..+.+-|+|+|.|...|.+|.-.|+|.+|.|++|+|.-
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 356889999999999999999999999 9999999999999999999999999999989999999999999864
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=6.4e-10 Score=83.80 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred CHHHHHHHhcccCCeeEEEEe----------CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 68 TDEDLRQPFSQYGEIASVKIP----------VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 68 ~~~~l~~~F~~~G~v~~~~~~----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
.+++|.+.|++||.|.++.|. +.+|++||+|.+.++|.+|++.|||..++|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999987 335899999999999999999999999999999999975
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=4e-07 Score=59.72 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeeccC
Q 029716 54 SNTTIFVGGLDPNV-T----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (189)
Q Consensus 54 ~~~~l~v~nl~~~~-~----~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 128 (189)
-.++|+|.||+.++ + .+.++++|..|+++......++-.-..|.|.+.++|.+|-..|++..+.|+.|+|.|+++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 45789999998864 2 257899999999999988888766789999999999999999999999999999999995
Q ss_pred CC
Q 029716 129 PA 130 (189)
Q Consensus 129 ~~ 130 (189)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.5e-05 Score=49.80 Aligned_cols=76 Identities=25% Similarity=0.244 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~-----G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
....+|.|.|||+.++++.|+-+|++- |+|..++... .-|+|+|.+.+.|++.++ -..+.|++..|.|.-..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 356899999999999999999999972 5888887765 889999999999999988 34678999999997655
Q ss_pred CCCC
Q 029716 128 NPAN 131 (189)
Q Consensus 128 ~~~~ 131 (189)
+...
T Consensus 83 ~~~~ 86 (104)
T 2dhx_A 83 PRAP 86 (104)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 4443
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=3.7e-05 Score=51.71 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCC-eeEEEeecc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-QSVRLSWGR 127 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 127 (189)
....+.|.|-+.|... ...+...|++||+|.+........+-.|.|++..+|++||. .||..|++ ..|-|....
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4457788888999885 46677889999999998876567899999999999999999 79999985 667777654
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.93 E-value=1.8e-06 Score=58.18 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDED 71 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 71 (189)
|++|||..|+||+|+|.++.++..+... ........++|||+|||+++|++.
T Consensus 62 i~~l~~~~~~g~~i~V~~a~~~~~~~~~-------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 62 IEKMNGMLLNDRKVFVGRFKSRKEREAE-------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHTTCEETTEECEEEESSCCCC-----------------------------------------------
T ss_pred HHHcCCCEECCEEEEEEECCCccccccc-------------------cccccCCCCceEeCCCCCCccccc
Confidence 4579999999999999999876544211 112233456899999999998764
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.92 E-value=6e-05 Score=48.44 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCC---e--eEE
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGK---Q--SVR 122 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g---~--~l~ 122 (189)
++|.|.+||+.+|++++.+.+....++........ ..-|+|.|.+.+++..-.+.++|+.+.+ . ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999888776666432 2579999999999999999999998832 2 335
Q ss_pred Eeecc
Q 029716 123 LSWGR 127 (189)
Q Consensus 123 v~~a~ 127 (189)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=7.3e-05 Score=48.26 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=46.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 112 (189)
....+.++| .+|.+....||.++|+.||.| .|+++. ...|||.|.+.+.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 344567777 999999999999999999843 344443 3789999999999999998764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.54 E-value=0.00012 Score=47.46 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 112 (189)
.+.++| ++|.+....||.++|+.|| -..|.++.| ..|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 356677 8999999999999999998 445556544 789999999999999999764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.46 E-value=9.8e-05 Score=50.35 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEe-------------------CCCcEEEEEecCHHHHHHHHHHhcC
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIP-------------------VGKGCGFVQFANRENAEEALHKLNG 113 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~-~~~~-------------------~~~g~afV~f~~~~~a~~A~~~l~g 113 (189)
..+.|.|-+.|+..+.. +.+.|++||.|++ .... ....+-.|+|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 45667777887776654 5667999999876 2111 024688999999999999999 799
Q ss_pred ceeCCeeEEEeecc
Q 029716 114 TVIGKQSVRLSWGR 127 (189)
Q Consensus 114 ~~~~g~~l~v~~a~ 127 (189)
..|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887765
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.43 E-value=0.00039 Score=45.00 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCceeCC---e--
Q 029716 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGK---Q-- 119 (189)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g---~-- 119 (189)
..+.+|.|..||+.+||+++.+.+...-++........ -.-|+|.|.+.++...-.+.++|..+-+ .
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 35678999999999999999888887655543333221 1568999999999999999999998832 2
Q ss_pred eEEEeecc
Q 029716 120 SVRLSWGR 127 (189)
Q Consensus 120 ~l~v~~a~ 127 (189)
+..|++|-
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 34566663
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.04 E-value=0.00038 Score=57.62 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCc-EEEEEecCHHHHHHHHH
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALH 109 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g-~afV~f~~~~~a~~A~~ 109 (189)
.++|+|. .+..+++.+|.+.|++||.|.++.+-.++| |+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 5789997 799999999999999999999999988876 89999999999887765
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.73 E-value=0.00031 Score=45.61 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=31.9
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLD 64 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 64 (189)
++|||..|.|++|+|+++.++...... ...........+|||+||+
T Consensus 55 ~~l~g~~~~g~~l~V~~a~~~~~~~~~-----------------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 55 RGLDGKVICGSRVRVELSTGMPRRSRF-----------------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HHHHHSCSSSCCCEEEESSSCCCSSCC-----------------CSCCCSCCCCSCCCSCCCC
T ss_pred HHHCCCeECCcEEEEEEccCCCCcccC-----------------CCCCccccCCCceecCCCC
Confidence 468999999999999999987533200 0011223457789999997
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.18 E-value=0.0017 Score=45.24 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred CcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEeeccCC
Q 029716 91 KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRNP 129 (189)
Q Consensus 91 ~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~a~~~ 129 (189)
+|+++|+|.+.++|++|++.+ |+..++| .|.+.++...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 689999999999999999999 9999999 9999998754
No 222
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.43 E-value=0.0006 Score=45.27 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=36.9
Q ss_pred CccCCceecCcceEeecCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcccCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~ 81 (189)
+.|||..|.|+.|+|.++.++... .+++...++++|+++|++||-
T Consensus 65 ~~l~g~~~~g~~l~v~~a~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 65 DHLSGFNVSNRYLVVLYYNANRAF-----------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHTTCBSSSCBCEEEECCHHHHT-----------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCEECCeEEEEEEecCChhh-----------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 569999999999999999875321 356777889999999999973
No 223
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.27 E-value=0.011 Score=41.25 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=23.2
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCcee
Q 029716 90 GKGCGFVQFANRENAEEALHKLNGTVI 116 (189)
Q Consensus 90 ~~g~afV~f~~~~~a~~A~~~l~g~~~ 116 (189)
.+||+||+|.+.++|++|++.+++...
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 469999999999999999998876443
No 224
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.76 E-value=0.01 Score=38.23 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=22.8
Q ss_pred CCccCCceecCcceEeecCCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSSG 26 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~~ 26 (189)
|++|||.+|.||+|+|.+|..+++..
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHhcCCccCCceEEEEecCCCccee
Confidence 46799999999999999999987663
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.96 E-value=0.27 Score=41.18 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 029716 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 112 (189)
....++|+ ++..+...+|.++|+.||.| +|.++ +...|||.|.+.+.|..+++.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 34566666 88889999999999999954 45554 45789999999999999999885
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.23 E-value=0.064 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.||+..|.|++|+|.++.++...
T Consensus 62 ~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 62 MEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHCCCccCCCEEEEEEcCCCccc
Confidence 3568999999999999999987654
No 227
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.16 E-value=0.12 Score=33.85 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.6
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|+.|+|.++.++...
T Consensus 74 ~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 74 IQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHHTTTCEETTEECEEEESSCCCCC
T ss_pred HHHhCCCEECCEEEEEEEccCCCCC
Confidence 3579999999999999999987654
No 228
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.98 E-value=0.085 Score=33.22 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.5
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|++|+|+++.++...
T Consensus 65 ~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 65 IEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp HHTTTTCEETTEECEEEESCCCCCC
T ss_pred HHHcCCCEECCEEEEEEEecccCCC
Confidence 3579999999999999999987654
No 229
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=91.83 E-value=0.15 Score=33.63 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|++|+|+++..+...
T Consensus 65 i~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 65 AKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHHhCCCEECCEEEEEEECCCCCCC
Confidence 3569999999999999999887544
No 230
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.19 E-value=0.074 Score=33.37 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCccCC-ceecCcceEeecCCCCCCC
Q 029716 1 MTEMNG-VYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG-~~l~gr~i~V~~a~~~~~~ 25 (189)
|++||| ..|+|++|+|+++.++..+
T Consensus 61 ~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 61 IETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHHccCCeeECCEEEEEEEccCcccc
Confidence 357999 9999999999999987554
No 231
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.10 E-value=0.12 Score=33.55 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCccCCceecC-----cceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSS-----RPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~g-----r~i~V~~a~~~~~~ 25 (189)
|++|||..|.| ++|+|.+|.++...
T Consensus 67 i~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 67 VRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 45799999999 99999999987543
No 232
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.90 E-value=0.057 Score=33.98 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.2
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
+.|||..|.|++|+|+++.++...
T Consensus 65 ~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 65 EQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HHHTTCCSSSSCCEEEESSCCCCC
T ss_pred HHhCCCeeCCcEEEEEEcccccCC
Confidence 468999999999999999988655
No 233
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.47 E-value=0.08 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.9
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
++|||..|.|++|+|+++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHhCCCeeCCcEEEEEEccCCCCC
Confidence 578999999999999999887544
No 234
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.43 E-value=0.077 Score=33.08 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|++|+|.++.++...
T Consensus 60 ~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 60 IAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHhCCCEECCcEEEEEECCCCCCC
Confidence 3569999999999999999887544
No 235
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.33 E-value=0.093 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|++|||..|.|++|+|.++.++...
T Consensus 67 ~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 67 YAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHHhCCCEECCcEEEEEEcCCCccc
Confidence 3579999999999999999988654
No 236
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.28 E-value=0.077 Score=33.08 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=21.0
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
+.||+..|.|++|+|+++.++...
T Consensus 60 ~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 60 RNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHHTTCBCSSCBCEEECSSCCCCC
T ss_pred HHhcCCccCCcEEEEEECCCCCCC
Confidence 578999999999999999987554
No 237
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=89.72 E-value=0.075 Score=33.68 Aligned_cols=20 Identities=5% Similarity=0.090 Sum_probs=17.8
Q ss_pred CCccCCceecCcceEeecCC
Q 029716 1 MTEMNGVYCSSRPMRIGAAT 20 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~ 20 (189)
|+.||+..|.||+|+|++|.
T Consensus 60 i~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 60 QMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHTTEEETTEEEEEECCC
T ss_pred HHHhcCCEECCcEEEEEECC
Confidence 45799999999999999983
No 238
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=89.26 E-value=0.096 Score=32.54 Aligned_cols=23 Identities=0% Similarity=0.021 Sum_probs=19.8
Q ss_pred CCccCCceecCcceEeecCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRK 23 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~ 23 (189)
|++|||..|.|++|+|+++..+.
T Consensus 57 i~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 57 IQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHhCCCeECCcEEEEEEcCCCc
Confidence 35699999999999999997764
No 239
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=88.82 E-value=0.094 Score=34.37 Aligned_cols=23 Identities=0% Similarity=-0.054 Sum_probs=19.8
Q ss_pred CCccCCceecCcceEeecCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRK 23 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~ 23 (189)
|++|||..|.||+|+|.++....
T Consensus 65 i~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 65 VKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHTTCEETTEECEEEECSTTH
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 45799999999999999997654
No 240
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=88.77 E-value=0.1 Score=32.99 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
+.|||..|+|+.|+|.++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 62 RNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp HHHTTCEETTEECEEEECSCSSGG
T ss_pred HHhCCCeECCeEEEEEEcCCCCCC
Confidence 578999999999999999987543
No 241
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=88.22 E-value=0.091 Score=32.66 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=17.4
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|++|||..|.|++|+|++|......
T Consensus 59 ~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 59 IAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp HHTSCSSCCSSSSCSEEEC------
T ss_pred HHHhCCCEECCeEEEEEEcCCCCCC
Confidence 3579999999999999999887543
No 242
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.85 E-value=0.19 Score=32.09 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=21.0
Q ss_pred CCccCCce-ecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVY-CSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~-l~gr~i~V~~a~~~~~~ 25 (189)
|++|||.. |.|++|+|.++.++...
T Consensus 68 ~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 68 LTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHHccCCcccCCEeEEEEEccCCCcC
Confidence 35699999 99999999999887544
No 243
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.70 E-value=0.15 Score=32.47 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.9
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
+.|||..|.|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 68 RNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHhCCCeeCCcEEEEEeCCCccch
Confidence 569999999999999999987544
No 244
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.66 E-value=0.38 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=20.4
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|++|+|+++......
T Consensus 73 ~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 73 ISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHHTTCEETTEECEEEECSCCCCC
T ss_pred HHHhCCCEeCCCEEEEEEcccCCCC
Confidence 3568999999999999998865443
No 245
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=87.47 E-value=0.11 Score=34.17 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|++|+|.++.++...
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 74 IDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4679999999999999999987544
No 246
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=86.92 E-value=0.11 Score=34.43 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=19.2
Q ss_pred CCccCCceecCcceEeecCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPR 22 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~ 22 (189)
|++|||.+++||.|+|.++...
T Consensus 72 i~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 72 VNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHTTCEETTEECEEEEECHH
T ss_pred HHHhCCCEECCEEEEEEEEcHH
Confidence 4679999999999999998654
No 247
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.45 E-value=0.37 Score=30.15 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=20.0
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+ |||..|+|++|+|+++..+...
T Consensus 62 i~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 62 LS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HT-CSCCEETTEECCCBCSCCSCCC
T ss_pred Hh-cCCeEECCEEEEEEECCcCCCC
Confidence 35 9999999999999998876543
No 248
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.29 E-value=0.66 Score=29.69 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred CCccC--CceecCcceEeecCCCCCCC
Q 029716 1 MTEMN--GVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mn--G~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|| +..|.|++|+|.+|.++...
T Consensus 69 ~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 69 RRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp HTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 35685 59999999999999987554
No 249
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=86.20 E-value=0.13 Score=34.23 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||..|.|+.|+|.+|..+...
T Consensus 81 ~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 81 MEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHHhCCCeeCCeEEEEEEecCCCCC
Confidence 3568999999999999999877544
No 250
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=85.29 E-value=0.11 Score=32.77 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=19.9
Q ss_pred CccCCceecCcceEeecCCCCCCC
Q 029716 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 2 ~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
++|||..|.|++|+|+++..+...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHcCCCeeCCcEEEEEEcCcCCCC
Confidence 468999999999999999876443
No 251
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=85.25 E-value=0.35 Score=32.41 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCccCCc----eecCcceEeecCCCCCCC
Q 029716 1 MTEMNGV----YCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~----~l~gr~i~V~~a~~~~~~ 25 (189)
|+.|||. .|.||+|+|+++.++...
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 3578999 999999999999886543
No 252
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.94 E-value=0.13 Score=33.58 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=19.8
Q ss_pred CCccCCceecCcceEeecCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRK 23 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~ 23 (189)
|+.|||..|.|++|+|.||....
T Consensus 63 i~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 63 FRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999997754
No 253
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=84.44 E-value=0.23 Score=33.71 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.3
Q ss_pred CCccCCceecC--cceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~g--r~i~V~~a~~~~~~ 25 (189)
|++|||..|.| ++|+|++++.+.-.
T Consensus 83 i~~LnG~~i~g~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 83 KLSLDGQNIYNACCTLRIDFSKLTSLN 109 (130)
T ss_dssp HHHHTTCEEETTEEEEEEEECSCSSCC
T ss_pred HHHcCCCeecCCCcEEEEEecCCCcee
Confidence 46799999998 99999999987544
No 254
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=84.30 E-value=0.28 Score=33.94 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.9
Q ss_pred CCccCCceecCcceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~~ 25 (189)
|++||+..|.|++|+|+||.+....
T Consensus 98 i~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 98 MRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHHTTTSEETTEECEEEEESCCCTT
T ss_pred HHHhCCCEECCeEEEEEECCCCCCc
Confidence 3569999999999999999876443
No 255
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=84.16 E-value=0.59 Score=33.02 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.5
Q ss_pred CCccCCceecC--cceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~g--r~i~V~~a~~~~~~ 25 (189)
|++|||..|.| ++|+|+|++++...
T Consensus 101 i~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 101 KLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp HHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred HHHhCCCEecCCCcEEEEEEecCCccc
Confidence 35799999966 99999999987533
No 256
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.78 E-value=0.26 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCccCCceecC--cceEeecCCCCCCC
Q 029716 1 MTEMNGVYCSS--RPMRIGAATPRKSS 25 (189)
Q Consensus 1 i~~mnG~~l~g--r~i~V~~a~~~~~~ 25 (189)
|++|||..|.| ++|+|++|.++...
T Consensus 79 ~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 79 KAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp HHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred HHHhCCCEecCCCeEEEEEEecCCcce
Confidence 45799999988 69999999987544
No 257
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.76 E-value=1.3 Score=28.62 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.7
Q ss_pred CCccCCceecCcceEeecCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRK 23 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~ 23 (189)
|+.||+ .|.|++|+|+++....
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTTC
T ss_pred HHhCCC-cCCCEEEEEEEcccCC
Confidence 467898 8999999999998764
No 258
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.49 E-value=4.8 Score=23.97 Aligned_cols=68 Identities=12% Similarity=0.304 Sum_probs=41.8
Q ss_pred eEEEcCC-CCCCCHHHHHHHhcccC-----CeeEEEEeCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecc
Q 029716 57 TIFVGGL-DPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (189)
Q Consensus 57 ~l~v~nl-~~~~~~~~l~~~F~~~G-----~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 127 (189)
++||..= ...++..+|..++..-+ .|-.+++. ..|.||+-.. +.+..+++.|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555311 22366677777777544 34455554 3688888865 46788899999999999999988765
No 259
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=79.71 E-value=5.4 Score=23.09 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHH
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 110 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 110 (189)
..++.|.++.-.-....+++.+.. ..|..+.+....+-+.|+|++.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 457889999888888899999999 8999998887778888999866666777764
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=78.73 E-value=0.69 Score=34.34 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=19.6
Q ss_pred CCccCCceecCcceEeecCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPR 22 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~ 22 (189)
|++|||..|.|++|+|.+|.+.
T Consensus 129 i~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 129 MDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHcCCCeECCEEeEEEECCCC
Confidence 4679999999999999999765
No 261
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.63 E-value=1.5 Score=28.75 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=17.3
Q ss_pred cCCceecCcceEeecCCCC
Q 029716 4 MNGVYCSSRPMRIGAATPR 22 (189)
Q Consensus 4 mnG~~l~gr~i~V~~a~~~ 22 (189)
||+..|+||.|+|.++..+
T Consensus 80 ~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 80 KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp GTTEEETTEEEEEEEECHH
T ss_pred cCCCeECCeEEEEEECCHH
Confidence 8999999999999998765
No 262
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.63 E-value=0.86 Score=29.61 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.3
Q ss_pred CCceecCcceEeecCCCCCCC
Q 029716 5 NGVYCSSRPMRIGAATPRKSS 25 (189)
Q Consensus 5 nG~~l~gr~i~V~~a~~~~~~ 25 (189)
++..|.||+|+|.+|..+...
T Consensus 75 ~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 75 VTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp SCCEETTEECCBCCCSSSSCC
T ss_pred CCceECCEEEEEEEcCCCCCC
Confidence 358999999999999887544
No 263
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.28 E-value=1 Score=28.95 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=16.9
Q ss_pred ccCC--ceecCcceEeecCCCCCC
Q 029716 3 EMNG--VYCSSRPMRIGAATPRKS 24 (189)
Q Consensus 3 ~mnG--~~l~gr~i~V~~a~~~~~ 24 (189)
.||+ ..|.|++|+|.++..+..
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HhccCCceECCEEEEEEEccCccc
Confidence 4544 459999999999987643
No 264
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.42 E-value=20 Score=22.44 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 029716 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (189)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 112 (189)
-..+|-|-|-|+|..+-..++.-.....|---.|+.+ .|-|.+.|.+.++...|+..|-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHH
Confidence 3457888899999999888877666666654555544 4789999999999999998773
No 265
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=66.27 E-value=1.9 Score=35.23 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.7
Q ss_pred CCccCCceecCcceEeecCCCCCC
Q 029716 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (189)
Q Consensus 1 i~~mnG~~l~gr~i~V~~a~~~~~ 24 (189)
|++|||..|.|++|.|.++..+..
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCCCC
Confidence 467999999999999999987644
No 266
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=65.98 E-value=2 Score=27.92 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=16.0
Q ss_pred CCccCCceecCcc-----eEeecCCCCC
Q 029716 1 MTEMNGVYCSSRP-----MRIGAATPRK 23 (189)
Q Consensus 1 i~~mnG~~l~gr~-----i~V~~a~~~~ 23 (189)
|++|||..|+|++ |+|..+.++.
T Consensus 68 i~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 68 VRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp HHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred HHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 4579999999999 6776666543
No 267
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=65.33 E-value=17 Score=20.71 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec----CHHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~----~~~~a~~A~~~ 110 (189)
.++.|.++.-.-....++..+.....|..+.+....+-+.|+|+ +.+....+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45777787776667789999999888998888877788899996 45666777764
No 268
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=64.33 E-value=13 Score=20.79 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC---HHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~---~~~a~~A~~~ 110 (189)
.++.|.++.-.-....++..+.....|..+.+....+-+.|+|.+ .+...++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 356778877776678899999999899999988888888898853 4455555553
No 269
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.97 E-value=2.8 Score=27.50 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.7
Q ss_pred ccCCceecCcceEeecCCCC
Q 029716 3 EMNGVYCSSRPMRIGAATPR 22 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~~~ 22 (189)
+|||..|+||.|+|.++..+
T Consensus 85 ~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 85 CRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp TSCSBCSTTSCBEEEEECHH
T ss_pred HhCCCeECCcEEEEEECCHH
Confidence 48999999999999998765
No 270
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.39 E-value=2.9 Score=26.96 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=17.7
Q ss_pred cCCceecCcceEeecCCCCC
Q 029716 4 MNGVYCSSRPMRIGAATPRK 23 (189)
Q Consensus 4 mnG~~l~gr~i~V~~a~~~~ 23 (189)
+|+..|.||+|+|.++..+.
T Consensus 76 ~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 76 LHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp GCSEEETTEEEEEEEECHHH
T ss_pred hCCCccCCeEEEEEECCHHH
Confidence 39999999999999998764
No 271
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=54.60 E-value=23 Score=19.00 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec---CHHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA---NRENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~---~~~~a~~A~~~ 110 (189)
++.|.++.-......+++.+.....|..+.+....+...|+|+ +.+....+++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 3455666655555778889998888989988888888889886 34455555554
No 272
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=52.46 E-value=35 Score=20.40 Aligned_cols=56 Identities=13% Similarity=0.291 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
.++.|.++........++..+...-.|..+.+......+.|.|.. .+....+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 356677766655567789999998889999998888889999863 45556666644
No 273
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=50.02 E-value=4.9 Score=27.29 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=15.8
Q ss_pred ccCCceecCcceEeecCC
Q 029716 3 EMNGVYCSSRPMRIGAAT 20 (189)
Q Consensus 3 ~mnG~~l~gr~i~V~~a~ 20 (189)
+|||..|+||+|+|+.-.
T Consensus 77 ~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp TTTCEEETTEEEEEEECC
T ss_pred hhcCCeecCcEEEEEECc
Confidence 689999999999998644
No 274
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=48.41 E-value=3.8 Score=28.23 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHhcccCCeeEEEEeCCCcEEEEEec
Q 029716 70 EDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99 (189)
Q Consensus 70 ~~l~~~F~~~G~v~~~~~~~~~g~afV~f~ 99 (189)
+++.++|...|.|+... ..+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 46667788888887654 45899999876
No 275
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=48.04 E-value=32 Score=18.71 Aligned_cols=55 Identities=7% Similarity=0.193 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC---HHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~---~~~a~~A~~~ 110 (189)
.++.|.++.-......++..+.....|..+.+....+.+.|.|+. .+....+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 356677776655567788999988889999888888888999874 3444455554
No 276
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=46.71 E-value=41 Score=19.51 Aligned_cols=57 Identities=7% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec----CHHHHHHHHHHh
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 111 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 111 (189)
..++.|.++........++..+.....|..+.+....+.+.|+|. +.+....+++.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 356788888877777789999999889999988887888999986 345556666643
No 277
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=45.57 E-value=40 Score=19.03 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
..++.|.++.-......++..+.....|..+.+....+.+.|.|.. .+....+++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4567888888887788899999988888888887777888888864 35556666644
No 278
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=45.30 E-value=35 Score=18.34 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 110 (189)
++.|.++.-......++..+.....|..+.+....+...|+|.. .+....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56788887776677889999998889998888878888899863 3444555553
No 279
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=44.70 E-value=38 Score=18.52 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
++.|.++.-.-....++..+.....|..+.+....+.+.|.|.. .+....+++.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 56677766554556788888888888888888878888999873 45556666643
No 280
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.10 E-value=64 Score=22.72 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=34.4
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--cccCCeeEEEEeCC---CcEEEEEecC-HHHHHHHHH
Q 029716 57 TIFVGGLDP-N--------VTDEDLRQPF--SQYGEIASVKIPVG---KGCGFVQFAN-RENAEEALH 109 (189)
Q Consensus 57 ~l~v~nl~~-~--------~~~~~l~~~F--~~~G~v~~~~~~~~---~g~afV~f~~-~~~a~~A~~ 109 (189)
++.|-|++. . .+..+|++.| +.|..+.-..+--. .+++.|+|.+ ...-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 456677776 1 3457889977 88987665444433 3789999995 444444544
No 281
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=43.96 E-value=38 Score=18.38 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=40.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC---HHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~---~~~a~~A~~~ 110 (189)
++.|.++.-......++..+.....|..+.+......+.|.|.. .+....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 46677777665667888999988889999888888888888874 3445555553
No 282
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=43.79 E-value=61 Score=20.97 Aligned_cols=57 Identities=9% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec----CHHHHHHHHHHh
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 111 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 111 (189)
..++.|.++.-......++..+.....|..+.+....+.+.|+|. +.++..++++.+
T Consensus 81 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 81 NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhC
Confidence 346778888776666788999998888989988888888999987 345666677654
No 283
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=43.59 E-value=39 Score=18.41 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 110 (189)
.++.|.++.-.-....++..+.....|..+.+....+.+.|.|.. .+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 457787776655556788888888889888888878888898873 4455556654
No 284
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=43.56 E-value=43 Score=18.81 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
.++.|.++.-......++..+.....|..+.+....+.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 356777877766677889999988888888877777888888863 45556666644
No 285
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=42.67 E-value=41 Score=18.35 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=41.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
++.|.++........++..+.....|..+.+....+.+.|.|.. .+....+++.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 56677777666667889999998889999888878888898863 45555666543
No 286
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=40.83 E-value=65 Score=20.13 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
.++.|.++...-....|+..+...-.|..+.+....+.+.|+|.. .+....+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 467788888877778899999998889999998888899999974 34555566643
No 287
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=40.48 E-value=74 Score=20.66 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec----CHHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 111 (189)
.++.|.++.-......+++.+.....|..+.+......+.|+|. +.+....+++.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888888777889999999888988888877788899987 456666777654
No 288
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=38.68 E-value=35 Score=18.67 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=35.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 109 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~ 109 (189)
++.|.++.-......++..+... .|..+.+....+.+.|.+...+....+++
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34555555444456788888888 88888888777888898886533334444
No 289
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=37.66 E-value=53 Score=18.17 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=40.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
++.|.++........++..+...-.|..+.+....+.+.|.|+. .+....+++.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46677766555556788889988889999888888888999864 45556666643
No 290
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=37.21 E-value=53 Score=18.04 Aligned_cols=56 Identities=5% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecCH----HHHHHHHHH
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALHK 110 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 110 (189)
..++.|.++........++..+.....|..+.+....+.+.|.|... +....+++.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678888887777788999999988899998888888889998742 334445543
No 291
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=35.93 E-value=54 Score=17.80 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=38.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec---CHHHHHHHHHHh
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA---NRENAEEALHKL 111 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~---~~~~a~~A~~~l 111 (189)
++.|.++...-....++..+.....|..+.+....+.+.|.|. +.+....+++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 4566666655455678888888888888888777788888886 344555666543
No 292
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=33.99 E-value=61 Score=17.84 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=42.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC--HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN--RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~--~~~a~~A~~~l 111 (189)
.++.|.++.-.-....++..+.....|..+.+....+.+.|.|+. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 357788887776677889999988889999888888888899875 34445555543
No 293
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=30.79 E-value=63 Score=17.00 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 110 (189)
++.|.++.-.-....++..+...-.|..+.+....+.+.|.|.. .+....+++.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46677766554556688888888888888888777888898873 3445555554
No 294
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=29.81 E-value=75 Score=17.54 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=38.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec-CHHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA-NRENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~-~~~~a~~A~~~ 110 (189)
.++.| ++.-.-....+++.+.....| .+.+.....-+.|++. +.+....+|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHH
Confidence 35667 777665667888888888888 8888887777888875 45566666653
No 295
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.97 E-value=1.1e+02 Score=19.42 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred CeeEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCce
Q 029716 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (189)
Q Consensus 81 ~v~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~ 115 (189)
.|.++....+ +||-|||=.+..+...|++.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4667655543 8999999999999999998776543
No 296
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.41 E-value=1e+02 Score=18.73 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec-CHHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA-NRENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~-~~~~a~~A~~~ 110 (189)
.++.|. +.-.-....+++.+.....|..+.+......+.|+|. +.+....+|+.
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 345565 5544445788999999888999998888888888885 45556666664
No 297
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=27.92 E-value=80 Score=18.62 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=38.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEec-CHHHHHHHHHH
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA-NRENAEEALHK 110 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~-~~~~a~~A~~~ 110 (189)
.++.|.++.-......++..+.....|..+.+......+.|++. +.+....+|+.
T Consensus 24 ~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 24 LSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHH
Confidence 45666666655555678888888888888888877788888875 44555666654
No 298
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=27.91 E-value=79 Score=17.19 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
.++.|.++.-.-....++..+...-.|..+.+....+.+.|.|.. .+....+++.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 467788887776677789999988888888887777888888863 45555566543
No 299
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.20 E-value=1.1e+02 Score=18.73 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.7
Q ss_pred CeeEEEEeC-CCcEEEEEecCHHHHHHHHHHhcCc
Q 029716 81 EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGT 114 (189)
Q Consensus 81 ~v~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~ 114 (189)
+|.++.+.. -.||-||+++..++...+++...+.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 466666553 3699999999998888888877654
No 300
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.20 E-value=65 Score=18.83 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.1
Q ss_pred CCeeEEEEeCCCcEEEEEecC
Q 029716 80 GEIASVKIPVGKGCGFVQFAN 100 (189)
Q Consensus 80 G~v~~~~~~~~~g~afV~f~~ 100 (189)
|+|++| ...+..++|.|+|
T Consensus 28 GtV~kV--~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKV--DSAREVCLVQFED 46 (68)
T ss_dssp EEEEEE--ETTTTEEEEEETT
T ss_pred eEEEEE--ecCCcEEEEEEcc
Confidence 455444 3557899999986
No 301
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=25.71 E-value=83 Score=16.69 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALH 109 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~ 109 (189)
++.|.++.-.-....++..+...-.|..+.+....+.+.|.|.. .+....+++
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~ 62 (71)
T 2ldi_A 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIA 62 (71)
T ss_dssp EEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHH
Confidence 56777877766667788999988888888888878888888874 344455555
No 302
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=23.98 E-value=1.8e+02 Score=20.06 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
.++.|.++.-......++..+...-.|..+.+......+.|+|.. .+....+|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 467888887776677899999999899999998888889999863 45566666654
No 303
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=22.86 E-value=1.1e+02 Score=16.95 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHH
Q 029716 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHK 110 (189)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 110 (189)
++.|.++.-......++..+...-.|..+.+....+.+.|.|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46677766655556788888888788887776667888888863 4455556654
No 304
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.42 E-value=89 Score=18.22 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.8
Q ss_pred EeCCCcEEEEEecC
Q 029716 87 IPVGKGCGFVQFAN 100 (189)
Q Consensus 87 ~~~~~g~afV~f~~ 100 (189)
|...++.|+|.|.|
T Consensus 37 V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 37 INILKQSCFIIFED 50 (66)
T ss_dssp EETTTTEEEEEETT
T ss_pred EccCCcEEEEEEcc
Confidence 34557999999986
No 305
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=21.15 E-value=1.4e+02 Score=17.61 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 029716 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN----RENAEEALHKL 111 (189)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 111 (189)
..++.|.++........++..+.....|..+.+....+.+.|.|.. .+....++..+
T Consensus 17 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 17 KSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3467888888877778899999988889888888878888899864 44555666543
No 306
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=21.15 E-value=1.4e+02 Score=21.00 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHHhcccCCeeEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 029716 69 DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 111 (189)
Q Consensus 69 ~~~l~~~F~~~G~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l 111 (189)
.++++.+|+.|-... ..|.+.+-.|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le-----~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE-----KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTS-----TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-----CCCcEEEccCcCHHHHHHHHHHH
Confidence 367899999984332 24567788899999999888753
No 307
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=20.59 E-value=1.7e+02 Score=18.44 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=21.8
Q ss_pred cCCeeEEEEeCCCcEEEEEec---CHHHHHHHHHHhc
Q 029716 79 YGEIASVKIPVGKGCGFVQFA---NRENAEEALHKLN 112 (189)
Q Consensus 79 ~G~v~~~~~~~~~g~afV~f~---~~~~a~~A~~~l~ 112 (189)
+-.|.+|++..|..+|-|-+. +.++.+.+++.|+
T Consensus 35 ~vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 35 FVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp GCCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHHHH
Confidence 347888999888877755543 3445555555554
No 308
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.31 E-value=87 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 029716 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (189)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~ 85 (189)
..+.|+|||..++...|..++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 46789999999999999998877 555443
Done!