BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029718
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
          Length = 238

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 52  PIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWI 100
           P+      L  +   YP  +L+ ++ + A H +T         F EHW+
Sbjct: 187 PLARXEKTLEALRPHYPEGRLARFVEEGAGHTLTPLXARVGLAFLEHWL 235


>pdb|3QK3|A Chain A, Crystal Structure Of Human Beta-Crystallin B3
 pdb|3QK3|B Chain B, Crystal Structure Of Human Beta-Crystallin B3
 pdb|3QK3|C Chain C, Crystal Structure Of Human Beta-Crystallin B3
          Length = 184

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 166 FSQWDSFFSQRDHDTILQVCPINI 189
           + +WD++ + RD D++L + P+NI
Sbjct: 71  YPRWDAWSNSRDSDSLLSLRPLNI 94


>pdb|1JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
           Amidinotransferase: A Mitochondrial Enzyme Involved In
           Creatine Biosynthesis
 pdb|2JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
           Amidinotransferase: A Mitochondrial Enzyme Involved In
           Creatine Biosynthesis
 pdb|3JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
           Amidinotransferase: A Mitochondrial Enzyme Involved In
           Creatine Biosynthesis
          Length = 423

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 18  GLVFTGFLLKPLDGTVSTGAPSRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLS 77
           G   TG++ +    T +  A SR     D K  +P+     V S   +D P E++ V  +
Sbjct: 25  GRTLTGWVQRTFQSTQAATASSRNSCAADDKATEPLPKDCPVSSYNEWD-PLEEVIVGRA 83

Query: 78  DDAAHDITFYALIEASHFAEHWIPYCKK 105
           ++A     F   ++A+ + ++W  Y K+
Sbjct: 84  ENACVP-PFTIEVKANTYEKYWPFYQKQ 110


>pdb|4JDW|A Chain A, Crystal Structure And Mechanism Of L-Arginine: Glycine
           Amidinotransferase: A Mitochondrial Enzyme Involved In
           Creatine Biosynthesis
          Length = 423

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 18  GLVFTGFLLKPLDGTVSTGAPSRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLS 77
           G   TG++ +    T +  A SR     D K  +P+     V S   +D P E++ V  +
Sbjct: 25  GRTLTGWVQRTFQSTQAATASSRNSCAADDKATEPLPKDCPVSSYNEWD-PLEEVIVGRA 83

Query: 78  DDAAHDITFYALIEASHFAEHWIPYCKK 105
           ++A     F   ++A+ + ++W  Y K+
Sbjct: 84  ENACVP-PFTIEVKANTYEKYWPFYQKQ 110


>pdb|3U27|C Chain C, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
 pdb|3U27|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
 pdb|3U27|B Chain B, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
 pdb|3U27|D Chain D, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
 pdb|3U27|E Chain E, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
 pdb|3U27|F Chain F, Crystal Structure Of Ethanolamine Utilization Protein Eutl
           From Leptotrichia Buccalis C-1013-B
          Length = 220

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 68  PTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFY-----VEPRSPGAYFQSISE 122
           P E  S+ +      D+T+ AL EA+  A   + Y K FY        +  G     +S 
Sbjct: 33  PNEHRSIGILTADCDDVTYTALDEATKKAVVDVAYGKSFYGGAANANTKLAGEVIGILSG 92

Query: 123 PHEAEEAKGFLAIKKLYEDMENGIITA 149
           P  AE   G  A     E+ E   I+A
Sbjct: 93  PTPAEVKSGLAAAVDFIEN-EAAFISA 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,263,354
Number of Sequences: 62578
Number of extensions: 250557
Number of successful extensions: 428
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)