Query 029718
Match_columns 189
No_of_seqs 154 out of 341
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 02:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 4E-71 8.6E-76 546.1 13.4 184 3-188 309-520 (1094)
2 PLN02915 cellulose synthase A 100.0 6.1E-71 1.3E-75 544.0 14.1 184 3-188 231-442 (1044)
3 PLN02893 Cellulose synthase-li 100.0 1.3E-70 2.7E-75 529.3 14.3 177 8-188 58-252 (734)
4 PLN02195 cellulose synthase A 100.0 7.3E-71 1.6E-75 541.0 12.2 185 2-188 195-407 (977)
5 PLN02400 cellulose synthase 100.0 9.2E-71 2E-75 544.2 12.3 185 2-188 299-511 (1085)
6 PLN02638 cellulose synthase A 100.0 2E-70 4.3E-75 541.6 11.3 184 3-188 293-504 (1079)
7 PLN02189 cellulose synthase 100.0 4.2E-70 9.1E-75 538.0 10.5 184 3-188 275-486 (1040)
8 PLN02248 cellulose synthase-li 100.0 4.4E-69 9.6E-74 532.9 14.5 184 3-187 306-558 (1135)
9 PLN02190 cellulose synthase-li 100.0 5.2E-66 1.1E-70 497.6 14.1 175 9-188 53-241 (756)
10 PF03552 Cellulose_synt: Cellu 100.0 2.4E-61 5.2E-66 463.8 11.7 148 39-188 2-154 (720)
11 TIGR03030 CelA cellulose synth 99.2 9.6E-11 2.1E-15 113.1 9.3 100 7-109 91-205 (713)
12 PRK11498 bcsA cellulose syntha 99.0 6E-10 1.3E-14 110.8 8.3 86 7-109 220-316 (852)
13 TIGR03111 glyc2_xrt_Gpos1 puta 97.8 7.5E-05 1.6E-09 68.1 7.4 55 35-93 46-102 (439)
14 COG1215 Glycosyltransferases, 97.6 0.00023 4.9E-09 62.4 7.7 49 39-92 57-105 (439)
15 cd04190 Chitin_synth_C C-termi 97.1 0.0003 6.4E-09 58.5 2.8 41 40-83 1-49 (244)
16 cd04191 Glucan_BSP_ModH Glucan 96.6 0.0066 1.4E-07 52.2 6.8 58 40-106 3-63 (254)
17 PRK05454 glucosyltransferase M 96.5 0.017 3.6E-07 57.1 10.0 59 39-107 127-189 (691)
18 cd06421 CESA_CelA_like CESA_Ce 96.4 0.0069 1.5E-07 48.0 5.5 47 39-88 4-50 (234)
19 cd04192 GT_2_like_e Subfamily 96.1 0.012 2.6E-07 46.2 5.3 47 40-90 1-47 (229)
20 PRK14583 hmsR N-glycosyltransf 96.1 0.02 4.4E-07 52.3 7.2 49 37-91 74-124 (444)
21 PRK11204 N-glycosyltransferase 95.9 0.037 8E-07 49.3 7.9 47 39-91 57-103 (420)
22 cd06438 EpsO_like EpsO protein 95.9 0.015 3.3E-07 45.5 4.7 45 40-88 1-45 (183)
23 TIGR03469 HonB hopene-associat 95.7 0.046 1E-06 49.0 7.9 51 36-91 38-90 (384)
24 cd04196 GT_2_like_d Subfamily 95.6 0.025 5.4E-07 43.9 5.0 47 39-91 1-47 (214)
25 cd06427 CESA_like_2 CESA_like_ 95.4 0.028 6.1E-07 45.9 5.0 49 39-91 4-52 (241)
26 cd06435 CESA_NdvC_like NdvC_li 94.8 0.067 1.5E-06 42.9 5.4 42 40-86 2-43 (236)
27 cd06437 CESA_CaSu_A2 Cellulose 94.7 0.072 1.6E-06 43.0 5.4 49 39-92 4-52 (232)
28 cd06439 CESA_like_1 CESA_like_ 94.5 0.075 1.6E-06 43.0 5.0 48 39-90 32-79 (251)
29 cd02525 Succinoglycan_BP_ExoA 93.8 0.15 3.2E-06 40.5 5.2 48 39-90 3-50 (249)
30 TIGR03472 HpnI hopanoid biosyn 93.3 0.42 9.1E-06 42.6 8.0 49 36-90 39-89 (373)
31 cd04186 GT_2_like_c Subfamily 93.2 0.21 4.6E-06 36.7 4.9 47 40-92 1-47 (166)
32 cd06433 GT_2_WfgS_like WfgS an 93.0 0.21 4.6E-06 37.8 4.9 45 40-90 2-46 (202)
33 cd06423 CESA_like CESA_like is 92.7 0.23 5E-06 35.7 4.5 46 40-91 1-46 (180)
34 cd06434 GT2_HAS Hyaluronan syn 91.8 0.23 5E-06 39.5 3.9 46 39-91 3-48 (235)
35 PF00535 Glycos_transf_2: Glyc 91.7 0.21 4.6E-06 36.2 3.3 49 39-93 1-49 (169)
36 PF13641 Glyco_tranf_2_3: Glyc 91.5 0.084 1.8E-06 42.0 1.0 44 39-88 4-47 (228)
37 cd02520 Glucosylceramide_synth 90.7 0.6 1.3E-05 36.9 5.2 46 39-90 4-49 (196)
38 COG0463 WcaA Glycosyltransfera 90.7 0.52 1.1E-05 32.9 4.3 47 39-91 6-52 (291)
39 cd02510 pp-GalNAc-T pp-GalNAc- 90.2 0.49 1.1E-05 40.2 4.6 49 40-91 2-50 (299)
40 cd04184 GT2_RfbC_Mx_like Myxoc 89.7 0.9 1.9E-05 35.2 5.3 48 39-91 4-51 (202)
41 cd04185 GT_2_like_b Subfamily 89.6 0.61 1.3E-05 36.4 4.4 46 40-91 1-46 (202)
42 cd04195 GT2_AmsE_like GT2_AmsE 89.4 0.9 2E-05 35.2 5.2 41 40-85 2-43 (201)
43 cd02522 GT_2_like_a GT_2_like_ 89.2 0.61 1.3E-05 36.6 4.1 46 40-91 3-48 (221)
44 cd04179 DPM_DPG-synthase_like 88.7 0.91 2E-05 34.5 4.7 48 40-91 1-48 (185)
45 cd06913 beta3GnTL1_like Beta 1 88.5 0.9 1.9E-05 36.3 4.7 47 40-91 1-47 (219)
46 PRK11234 nfrB bacteriophage N4 88.4 1.7 3.8E-05 43.5 7.6 46 39-90 66-112 (727)
47 cd06436 GlcNAc-1-P_transferase 87.5 0.92 2E-05 36.0 4.2 44 40-90 1-44 (191)
48 cd06420 GT2_Chondriotin_Pol_N 86.0 2.1 4.5E-05 32.5 5.3 45 40-90 1-45 (182)
49 PRK14716 bacteriophage N4 adso 86.0 1.7 3.8E-05 41.6 5.9 49 39-93 69-118 (504)
50 cd00761 Glyco_tranf_GTA_type G 84.4 3 6.5E-05 29.1 5.1 49 40-94 1-49 (156)
51 cd06442 DPM1_like DPM1_like re 81.8 2.9 6.2E-05 32.9 4.6 43 40-87 1-43 (224)
52 PRK15489 nfrB bacteriophage N4 81.4 4.7 0.0001 40.6 6.9 39 39-83 74-116 (703)
53 PRK10018 putative glycosyl tra 80.6 3.5 7.5E-05 36.1 5.1 38 39-82 8-45 (279)
54 cd04188 DPG_synthase DPG_synth 78.9 3 6.6E-05 33.0 3.9 47 40-90 1-49 (211)
55 PTZ00260 dolichyl-phosphate be 78.2 9.9 0.00022 33.9 7.4 48 39-90 73-126 (333)
56 PRK10073 putative glycosyl tra 75.9 5.6 0.00012 35.3 5.1 46 39-90 9-54 (328)
57 cd04187 DPM1_like_bac Bacteria 73.9 7.9 0.00017 29.7 4.9 47 40-91 1-49 (181)
58 PLN02726 dolichyl-phosphate be 73.0 7.5 0.00016 31.9 4.8 49 39-91 12-60 (243)
59 PRK10063 putative glycosyl tra 62.2 15 0.00032 31.2 4.6 49 39-91 4-53 (248)
60 PRK13915 putative glucosyl-3-p 61.9 15 0.00032 32.6 4.7 49 39-91 34-82 (306)
61 cd02514 GT13_GLCNAC-TI GT13_GL 53.4 27 0.00058 32.1 5.0 40 40-83 4-43 (334)
62 PF02012 BNR: BNR/Asp-box repe 45.8 12 0.00025 19.2 0.8 8 75-82 1-8 (12)
63 cd02511 Beta4Glucosyltransfera 45.6 35 0.00076 27.8 4.1 39 40-87 4-42 (229)
64 cd02526 GT2_RfbF_like RfbF is 42.1 42 0.00092 26.6 4.0 36 40-83 1-36 (237)
65 PF11720 Inhibitor_I78: Peptid 40.5 20 0.00044 24.8 1.7 19 62-80 34-52 (60)
66 PRK10714 undecaprenyl phosphat 36.6 70 0.0015 28.4 4.9 50 39-93 9-60 (325)
67 COG4226 HicB Predicted nucleas 35.4 25 0.00053 28.2 1.7 18 98-115 53-70 (111)
68 PF01580 FtsK_SpoIIIE: FtsK/Sp 34.9 1.7E+02 0.0038 23.4 6.6 74 54-153 53-126 (205)
69 KOG3177 Oligoketide cyclase/li 33.2 24 0.00052 31.3 1.4 51 69-119 64-116 (227)
70 PRK11039 putative dehydrogenas 32.0 59 0.0013 26.7 3.4 22 88-109 114-135 (140)
71 cd08313 Death_TNFR1 Death doma 30.9 39 0.00085 25.0 2.0 24 85-109 1-24 (80)
72 PF06853 DUF1249: Protein of u 30.5 76 0.0016 25.0 3.7 23 87-109 95-117 (120)
73 smart00497 IENR1 Intron encode 30.0 32 0.0007 21.9 1.3 25 73-97 3-28 (53)
74 PRK06839 acyl-CoA synthetase; 29.9 1E+02 0.0022 27.2 4.8 56 58-119 6-61 (496)
75 COG1057 NadD Nicotinic acid mo 28.8 64 0.0014 27.5 3.2 78 2-79 13-110 (197)
76 PRK09249 coproporphyrinogen II 28.2 99 0.0021 28.8 4.6 39 54-120 33-71 (453)
77 COG2943 MdoH Membrane glycosyl 27.1 5.2E+02 0.011 26.5 9.5 64 39-111 147-213 (736)
78 PF04580 Pox_D3: Chordopoxviri 26.9 3.2E+02 0.007 24.7 7.4 60 66-146 183-246 (246)
79 PF09373 PMBR: Pseudomurein-bi 26.8 98 0.0021 19.0 3.0 22 136-157 7-29 (33)
80 PF12344 UvrB: Ultra-violet re 26.6 94 0.002 21.0 3.1 26 87-112 12-37 (44)
81 PF01388 ARID: ARID/BRIGHT DNA 26.3 1.7E+02 0.0038 20.8 4.8 47 80-142 32-87 (92)
82 COG0579 Predicted dehydrogenas 25.9 1.1E+02 0.0025 29.1 4.6 40 98-145 74-114 (429)
83 PF02042 RWP-RK: RWP-RK domain 25.2 40 0.00087 23.4 1.1 17 99-116 32-48 (52)
84 COG3151 Uncharacterized protei 24.6 1E+02 0.0022 25.8 3.6 37 65-113 107-143 (147)
85 PRK13711 conjugal transfer pro 23.0 16 0.00034 28.7 -1.4 8 97-104 7-14 (113)
86 cd06432 GT8_HUGT1_C_like The C 23.0 1.4E+02 0.0031 25.7 4.4 40 40-83 3-42 (248)
87 PF00728 Glyco_hydro_20: Glyco 22.3 1.2E+02 0.0026 26.4 3.9 59 51-110 15-89 (351)
88 PRK05852 acyl-CoA synthetase; 22.1 2.7E+02 0.0059 25.3 6.1 66 47-118 9-75 (534)
89 COG1216 Predicted glycosyltran 22.0 1.6E+02 0.0034 25.4 4.5 48 40-93 7-54 (305)
90 PRK11509 hydrogenase-1 operon 21.0 2.4E+02 0.0053 22.7 5.0 88 39-151 37-125 (132)
91 PF04921 XAP5: XAP5, circadian 20.6 99 0.0021 27.6 2.9 68 103-187 53-120 (239)
92 KOG0075 GTP-binding ADP-ribosy 20.3 87 0.0019 27.0 2.4 36 65-110 58-93 (186)
93 PF08861 DUF1828: Domain of un 20.1 1.1E+02 0.0023 22.4 2.6 40 73-112 21-64 (90)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=4e-71 Score=546.13 Aligned_cols=184 Identities=32% Similarity=0.522 Sum_probs=168.9
Q ss_pred ccCCchh----hHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHhH
Q 029718 3 KMGDGHG----LVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINTV 59 (189)
Q Consensus 3 ~~~dg~~----l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nTv 59 (189)
+++|+++ +++||+||+|+|+ |++|.||++||+++ +| |||||||||.+|||++|+|||
T Consensus 309 ~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTV 388 (1094)
T PLN02436 309 PVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTV 388 (1094)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHH
Confidence 5667744 5999999999998 89999999999854 45 999999999999999999999
Q ss_pred HHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCcc----ccHHHHHHH
Q 029718 60 LSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEA----EEAKGFLAI 135 (189)
Q Consensus 60 ls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~----~~~~e~~~i 135 (189)
||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.++.++ ...+||++|
T Consensus 389 LSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~m 468 (1094)
T PLN02436 389 LSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAM 468 (1094)
T ss_pred HHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998776543 348899999
Q ss_pred HHHHHHHHHHHHHHHhc-CCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 136 KKLYEDMENGIITAAKL-GRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 136 K~~YEe~k~rIe~a~~~-g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
|+||||||+|||++++. +++|++.+.|.+| ++|++ ++++|||+|||||++|
T Consensus 469 KreYEe~K~RIe~l~~~~~~vp~~~~~m~dg-t~W~g-~~~~dHp~IIqVll~~ 520 (1094)
T PLN02436 469 KREYEEFKVKINALVATAQKVPEDGWTMQDG-TPWPG-NNVRDHPGMIQVFLGH 520 (1094)
T ss_pred HHHHHHHHHHHHHHHhhcccCchhhhhhccC-ccCCC-CCCCCCccceEEEecC
Confidence 99999999999999975 9999998777666 89996 5889999999999987
No 2
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=6.1e-71 Score=544.01 Aligned_cols=184 Identities=32% Similarity=0.447 Sum_probs=168.2
Q ss_pred ccCCchh----hHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHhH
Q 029718 3 KMGDGHG----LVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINTV 59 (189)
Q Consensus 3 ~~~dg~~----l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nTv 59 (189)
|++|+++ +++||+||+|+|+ |++|.||++||+++ +| |||||||||.+|||++|+|||
T Consensus 231 ~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTV 310 (1044)
T PLN02915 231 PAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTV 310 (1044)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHH
Confidence 6778854 5999999999998 89999999999843 45 999999999999999999999
Q ss_pred HHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccc----cHHHHHHH
Q 029718 60 LSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAE----EAKGFLAI 135 (189)
Q Consensus 60 ls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~----~~~e~~~i 135 (189)
||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.++.++. ..+||++|
T Consensus 311 LSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~m 390 (1044)
T PLN02915 311 LSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAM 390 (1044)
T ss_pred HHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987766433 37899999
Q ss_pred HHHHHHHHHHHHHHHhc-CCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 136 KKLYEDMENGIITAAKL-GRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 136 K~~YEe~k~rIe~a~~~-g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
|+||||||+|||++++. +++|++.+.|.+ |++|+++.+ +|||+|||||++|
T Consensus 391 KreYEe~K~RIe~l~~~~~~~~~~~~~m~d-gt~W~g~~~-~dHp~IIqVll~~ 442 (1044)
T PLN02915 391 KREYEEFKVRINALVAKAQKKPEEGWVMQD-GTPWPGNNT-RDHPGMIQVYLGS 442 (1044)
T ss_pred HHHHHHHHHHHHHHHhhhccCCcccccccC-CccCCCCCC-CCCccceEEeecC
Confidence 99999999999999975 899999866655 599997655 8999999999986
No 3
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.3e-70 Score=529.34 Aligned_cols=177 Identities=35% Similarity=0.584 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHHhhc--------cccCCCCCcccCCC-----CC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCcc
Q 029718 8 HGLVCWELSYGLVFT--------GFLLKPLDGTVSTG-----AP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKL 72 (189)
Q Consensus 8 ~~l~~~E~~f~~~W~--------p~~r~~~~~~l~~~-----~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl 72 (189)
.++++||+||+|+|+ |++|+||++||+++ +| ||||||+||.+|||++|+|||||+||+|||+|||
T Consensus 58 ~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~~~~~L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kl 137 (734)
T PLN02893 58 LLLLLADIVLAFMWATTQAFRMCPVHRRVFIEHLEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKL 137 (734)
T ss_pred HHHHHHHHHHHHHHHHccCccccccccccCHHHHhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccce
Confidence 578999999999998 89999999999843 56 9999999999999999999999999999999999
Q ss_pred EEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhc
Q 029718 73 SVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKKLYEDMENGIITAAKL 152 (189)
Q Consensus 73 ~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~~~~e~~~iK~~YEe~k~rIe~a~~~ 152 (189)
+|||||||||+||||||+|||+||++||||||||||+|||||+||+++.. ...+||++||+||||||+|||++++.
T Consensus 138 s~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R~P~~YF~~~~~----~~~~e~~~~k~~Yee~k~ri~~~~~~ 213 (734)
T PLN02893 138 SVYVSDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVERCPEAYFSSNSH----SWSPETEQIKMMYESMKVRVENVVER 213 (734)
T ss_pred EEEEecCCccHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCC----ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998732 13689999999999999999999999
Q ss_pred CCCChhh---hhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 153 GRIPEEV---RSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 153 g~vp~~~---~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
|++|++. +.++++|+.|+++++++|||+|||||++|
T Consensus 214 ~~~~~~~~~~~~~~~~f~~w~~~~~~~dH~~ivqV~l~~ 252 (734)
T PLN02893 214 GKVSTDYITCDQEREAFSRWTDKFTRQDHPTVIQVLLES 252 (734)
T ss_pred CcCchhhhhhcccccccccCcCCCCCCCCCceeeeeccC
Confidence 9999885 34557799999999999999999999986
No 4
>PLN02195 cellulose synthase A
Probab=100.00 E-value=7.3e-71 Score=541.04 Aligned_cols=185 Identities=29% Similarity=0.480 Sum_probs=168.0
Q ss_pred CccCCch----hhHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHh
Q 029718 2 EKMGDGH----GLVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINT 58 (189)
Q Consensus 2 ~~~~dg~----~l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nT 58 (189)
.+++||+ ++++||+||+|+|+ |++|.||++||+++ +| |||||||||.+|||++|+||
T Consensus 195 ~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NT 274 (977)
T PLN02195 195 NPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANT 274 (977)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHH
Confidence 3677887 45999999999998 89999999999854 45 99999999999999999999
Q ss_pred HHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCcc----ccHHHHHH
Q 029718 59 VLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEA----EEAKGFLA 134 (189)
Q Consensus 59 vls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~----~~~~e~~~ 134 (189)
|||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.++.++ ...+||++
T Consensus 275 VLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~ 354 (977)
T PLN02195 275 VLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRA 354 (977)
T ss_pred HHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776643 23889999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 135 IKKLYEDMENGIITAAKL-GRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 135 iK~~YEe~k~rIe~a~~~-g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
||+||||||+|||++++. +++|++.+.| ++|++|++ ++++|||+|||||+++
T Consensus 355 ~K~eYEe~k~RIe~~~~~~~~~~~~~~~m-~d~t~W~g-~~~~dHp~IIqVll~~ 407 (977)
T PLN02195 355 MKRDYEEYKVRVNALVAKAQKTPEEGWTM-QDGTPWPG-NNTRDHPGMIQVFLGE 407 (977)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcccccc-cCCccCCC-CCCCCCcchhhhhccC
Confidence 999999999999999975 8999998655 45699995 5889999999999754
No 5
>PLN02400 cellulose synthase
Probab=100.00 E-value=9.2e-71 Score=544.16 Aligned_cols=185 Identities=32% Similarity=0.493 Sum_probs=168.8
Q ss_pred CccCCchh----hHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHh
Q 029718 2 EKMGDGHG----LVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINT 58 (189)
Q Consensus 2 ~~~~dg~~----l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nT 58 (189)
.+++|+++ +++||+||+|+|+ |++|.||++||+++ +| ||||||+||.+|||++|+||
T Consensus 299 ~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NT 378 (1085)
T PLN02400 299 HPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANT 378 (1085)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHH
Confidence 35667744 5999999999998 89999999999854 45 99999999999999999999
Q ss_pred HHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCcc----ccHHHHHH
Q 029718 59 VLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEA----EEAKGFLA 134 (189)
Q Consensus 59 vls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~----~~~~e~~~ 134 (189)
|||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.+++++ ...+||++
T Consensus 379 VLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~ 458 (1085)
T PLN02400 379 VLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRA 458 (1085)
T ss_pred HHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876643 23889999
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 135 IKKLYEDMENGIITAA-KLGRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 135 iK~~YEe~k~rIe~a~-~~g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
||+||||||+|||+++ +.+++|++.|.|.+ |++|++ ++++|||+|||||++|
T Consensus 459 mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~d-gt~W~g-~~~~dHp~iIqVll~~ 511 (1085)
T PLN02400 459 MKREYEEFKVRINALVAKAQKIPEEGWTMQD-GTPWPG-NNPRDHPGMIQVFLGH 511 (1085)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcccccccc-CccCCC-CCCCCCchhhhhhhcC
Confidence 9999999999999998 78999999876644 599996 5889999999999987
No 6
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2e-70 Score=541.62 Aligned_cols=184 Identities=33% Similarity=0.496 Sum_probs=167.9
Q ss_pred ccCCch----hhHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHhH
Q 029718 3 KMGDGH----GLVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINTV 59 (189)
Q Consensus 3 ~~~dg~----~l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nTv 59 (189)
+++|++ ++++||+||+|+|+ |++|.||++||+++ +| |||||||||.+|||++|+|||
T Consensus 293 ~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTV 372 (1079)
T PLN02638 293 PVRNAYALWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTV 372 (1079)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHH
Confidence 556774 45999999999998 89999999999865 35 999999999999999999999
Q ss_pred HHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccc----cHHHHHHH
Q 029718 60 LSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAE----EAKGFLAI 135 (189)
Q Consensus 60 ls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~----~~~e~~~i 135 (189)
||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.++.++. ..+||++|
T Consensus 373 LSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~m 452 (1079)
T PLN02638 373 LSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAM 452 (1079)
T ss_pred HHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987765332 37899999
Q ss_pred HHHHHHHHHHHHHHH-hcCCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 136 KKLYEDMENGIITAA-KLGRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 136 K~~YEe~k~rIe~a~-~~g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
|+||||||+|||+++ +.+++|++.+.+.+| ++|+++ +++|||+||||+++|
T Consensus 453 K~eYEe~k~RIe~l~a~~~~~p~~~~~m~dg-t~W~g~-~~~dHp~IiqVll~~ 504 (1079)
T PLN02638 453 KREYEEFKVRINGLVAKAQKVPEEGWIMQDG-TPWPGN-NTRDHPGMIQVFLGH 504 (1079)
T ss_pred HHHHHHHHHHHHHHHhhccccCCccccccCC-ccCCCC-CCCCCHHHHHHHhcC
Confidence 999999999999987 689999988766555 999965 889999999999976
No 7
>PLN02189 cellulose synthase
Probab=100.00 E-value=4.2e-70 Score=537.97 Aligned_cols=184 Identities=33% Similarity=0.517 Sum_probs=168.0
Q ss_pred ccCCchh----hHHHHHHHHHhhc--------cccCCCCCcccCCC---------CC--CcEeeCCCCCCCChhHHHHhH
Q 029718 3 KMGDGHG----LVCWELSYGLVFT--------GFLLKPLDGTVSTG---------AP--SRTGSHRDPKTEQPIMVINTV 59 (189)
Q Consensus 3 ~~~dg~~----l~~~E~~f~~~W~--------p~~r~~~~~~l~~~---------~p--DvFV~T~DP~~Ep~~~~~nTv 59 (189)
+++||++ +++||+||+|+|+ |++|.||++||+++ +| |||||||||.+|||++|+|||
T Consensus 275 ~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTV 354 (1040)
T PLN02189 275 PVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTV 354 (1040)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHH
Confidence 5667755 4999999999998 89999999999854 45 999999999999999999999
Q ss_pred HHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccc----cHHHHHHH
Q 029718 60 LSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAE----EAKGFLAI 135 (189)
Q Consensus 60 ls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~----~~~e~~~i 135 (189)
||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.++.++. ..+||++|
T Consensus 355 LSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~ 434 (1040)
T PLN02189 355 LSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAM 434 (1040)
T ss_pred HHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987765332 37899999
Q ss_pred HHHHHHHHHHHHHHH-hcCCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 136 KKLYEDMENGIITAA-KLGRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 136 K~~YEe~k~rIe~a~-~~g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
|+||||||+|||+++ +.+++|++.+.+.+| ++|+++ +++|||+||||+++|
T Consensus 435 K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dG-t~W~g~-~~~dHp~IiQVll~~ 486 (1040)
T PLN02189 435 KREYEEFKVRINAIVAKAQKVPPEGWIMQDG-TPWPGN-NTRDHPGMIQVFLGH 486 (1040)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCccceeccC-ccCCCC-CCCCCHHHHHHHhcC
Confidence 999999999999997 789999988766555 999965 889999999999986
No 8
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=4.4e-69 Score=532.90 Aligned_cols=184 Identities=32% Similarity=0.501 Sum_probs=162.3
Q ss_pred ccCCc----hhhHHHHHHHHHhhc--------cccCCCCCcccCCC--------------CC--CcEeeCCCCCCCChhH
Q 029718 3 KMGDG----HGLVCWELSYGLVFT--------GFLLKPLDGTVSTG--------------AP--SRTGSHRDPKTEQPIM 54 (189)
Q Consensus 3 ~~~dg----~~l~~~E~~f~~~W~--------p~~r~~~~~~l~~~--------------~p--DvFV~T~DP~~Ep~~~ 54 (189)
|++|+ .++++||+||+|+|+ |++|.||+++|+++ +| |||||||||.+|||++
T Consensus 306 ~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~ 385 (1135)
T PLN02248 306 PNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLV 385 (1135)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchH
Confidence 56788 456999999999998 89999999999753 45 9999999999999999
Q ss_pred HHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccc----cHH
Q 029718 55 VINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAE----EAK 130 (189)
Q Consensus 55 ~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~----~~~ 130 (189)
|+|||||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+++.+++++. ..+
T Consensus 386 t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~ 465 (1135)
T PLN02248 386 TANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVK 465 (1135)
T ss_pred HHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776542 488
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-------hhhh-----------------------hcccCCCCCCCC-------C
Q 029718 131 GFLAIKKLYEDMENGIITAAKLGRIP-------EEVR-----------------------SKYKGFSQWDSF-------F 173 (189)
Q Consensus 131 e~~~iK~~YEe~k~rIe~a~~~g~vp-------~~~~-----------------------~~~~gfs~w~~~-------~ 173 (189)
||++||+||||||+|||++++.++++ ++.. .|.|| ++|+|+ +
T Consensus 466 d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dg-t~wpg~W~~~~~~~ 544 (1135)
T PLN02248 466 DRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATWMADG-THWPGTWLSSAPDH 544 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhcccccccccccccceeeccC-CcCCCcccCcccCC
Confidence 99999999999999999998755544 2211 15556 677764 7
Q ss_pred CCCCCcceeEeecc
Q 029718 174 SQRDHDTILQVCPI 187 (189)
Q Consensus 174 ~~~dHp~IIqVi~~ 187 (189)
+++|||+|||||++
T Consensus 545 ~~~dH~~IIqVll~ 558 (1135)
T PLN02248 545 SRGDHAGIIQVMLK 558 (1135)
T ss_pred CCCCCcceeEEecc
Confidence 99999999999975
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=5.2e-66 Score=497.64 Aligned_cols=175 Identities=31% Similarity=0.514 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHhhc--------cccCCCCCcccCCCC---C--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEE
Q 029718 9 GLVCWELSYGLVFT--------GFLLKPLDGTVSTGA---P--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVY 75 (189)
Q Consensus 9 ~l~~~E~~f~~~W~--------p~~r~~~~~~l~~~~---p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~Y 75 (189)
++++||+||+|+|+ |++|.|+|++|++++ | |||||||||.+|||++|+|||||+||+|||+|||+||
T Consensus 53 ~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p~~l~~r~~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscY 132 (756)
T PLN02190 53 VAFLCESCFSFVWLLITCIKWSPAEYKPYPDRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACY 132 (756)
T ss_pred HHHHHHHHHHHHHHHhccceeeecCCCCCcHHHHHhhccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceE
Confidence 46999999999998 889999999998764 5 9999999999999999999999999999999999999
Q ss_pred ecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCC-CccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029718 76 LSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEP-HEAEEAKGFLAIKKLYEDMENGIITAAKLGR 154 (189)
Q Consensus 76 lsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~-~~~~~~~e~~~iK~~YEe~k~rIe~a~~~g~ 154 (189)
|||||||+||||||+|||+||++||||||||||+|||||+||++.... ......+||++||+||||||+|||+|+. ++
T Consensus 133 vSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~IepRaPe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a~~-~~ 211 (756)
T PLN02190 133 VSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDATG-DS 211 (756)
T ss_pred EecCCCcHhHHHHHHHHHHHHhhhcccccccCCCcCCHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcc-CC
Confidence 999999999999999999999999999999999999999999985443 2234589999999999999999999873 44
Q ss_pred CChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 155 IPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 155 vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
++.+. .+.+..|+ +++++|||+|||||+||
T Consensus 212 ~~~~~---~~~~~~~~-~~~~~dH~~iiqVll~~ 241 (756)
T PLN02190 212 HWLDA---EDDFEAFS-NTKPNDHSTIVKVVWEN 241 (756)
T ss_pred CCccc---CCcccccC-CCCCCCCccceEEEecC
Confidence 43322 12256676 79999999999999987
No 10
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=2.4e-61 Score=463.82 Aligned_cols=148 Identities=43% Similarity=0.763 Sum_probs=139.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccc
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQ 118 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs 118 (189)
||||||+||.+|||++|+|||||+||+|||+|||+|||||||||+||||||+|||+||++||||||||+|+|||||+||+
T Consensus 2 DvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF~ 81 (720)
T PF03552_consen 2 DVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYFS 81 (720)
T ss_pred ceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccc----cHHHHHHHHHHHHHHHHHHHHHHh-cCCCChhhhhcccCCCCCCCCCCCCCCcceeEeeccC
Q 029718 119 SISEPHEAE----EAKGFLAIKKLYEDMENGIITAAK-LGRIPEEVRSKYKGFSQWDSFFSQRDHDTILQVCPIN 188 (189)
Q Consensus 119 ~~~~~~~~~----~~~e~~~iK~~YEe~k~rIe~a~~-~g~vp~~~~~~~~gfs~w~~~~~~~dHp~IIqVi~~n 188 (189)
++.++.++. ..+||++||++|||||+|||++++ .+++|++.+.+++| ++|++ ++++|||+||||+++|
T Consensus 82 ~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~-~~w~~-~~~~dH~~iiqv~~~~ 154 (720)
T PF03552_consen 82 SKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDG-TPWPG-NTRRDHPGIIQVLLDN 154 (720)
T ss_pred cCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCC-CcCCC-CCCcCChhheEeeccC
Confidence 987766543 389999999999999999999875 56799999989888 89995 7999999999999986
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.17 E-value=9.6e-11 Score=113.13 Aligned_cols=100 Identities=25% Similarity=0.288 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHhhc--------cccCCCCCccc-CCCCC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEE
Q 029718 7 GHGLVCWELSYGLVFT--------GFLLKPLDGTV-STGAP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVY 75 (189)
Q Consensus 7 g~~l~~~E~~f~~~W~--------p~~r~~~~~~l-~~~~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~Y 75 (189)
|+.++++|++++++.+ +..|++.+... ...+| ||+|||| ||++.++.+|+.|+++.|||.+|+.||
T Consensus 91 ~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~P~VsViIP~y---NE~~~iv~~tl~s~~~~dYP~~~~eIi 167 (713)
T TIGR03030 91 GTLLLLAELYSITILLLGYFQTVRPLDRTPVPLPLDPEEWPTVDVFIPTY---NEDLEIVATTVLAAKNMDYPADKFRVW 167 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCccCCCCCcccCCeeEEEEcCC---CCCHHHHHHHHHHHHhCCCCccceEEE
Confidence 5668999998775322 55666544222 23456 9999999 999999999999999999999999999
Q ss_pred ecCCCcchhhHH----HHHHHHHHHHHhHHHHHHcCCc
Q 029718 76 LSDDAAHDITFY----ALIEASHFAEHWIPYCKKFYVE 109 (189)
Q Consensus 76 lsDDg~s~~t~~----al~EAa~Fa~~WvPfC~k~~v~ 109 (189)
|.|||+++-|.. ...|+.+-+..+..+|+++||.
T Consensus 168 VvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 205 (713)
T TIGR03030 168 ILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN 205 (713)
T ss_pred EEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE
Confidence 999999888753 2334444455778899999876
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.03 E-value=6e-10 Score=110.77 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHhhc--------cccCCCCCccc-CCCCC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEE
Q 029718 7 GHGLVCWELSYGLVFT--------GFLLKPLDGTV-STGAP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVY 75 (189)
Q Consensus 7 g~~l~~~E~~f~~~W~--------p~~r~~~~~~l-~~~~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~Y 75 (189)
|.+++++|++++++.+ |+.|++.+... ...+| ||+|||| ||+..++.+|+.++++.|||.+|+.||
T Consensus 220 ~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~~~~~~~~~P~VsViIPtY---NE~~~vv~~tI~a~l~~dYP~~k~EVi 296 (852)
T PRK11498 220 GLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPTVDIFVPTY---NEDLNVVKNTIYASLGIDWPKDKLNIW 296 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCcccCCCCcEEEEEecC---CCcHHHHHHHHHHHHhccCCCCceEEE
Confidence 5678999997764222 66676544111 23467 9999999 999999999999999999999999999
Q ss_pred ecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCc
Q 029718 76 LSDDAAHDITFYALIEASHFAEHWIPYCKKFYVE 109 (189)
Q Consensus 76 lsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~ 109 (189)
|.|||+++ +.++ +|+++||.
T Consensus 297 VVDDgS~D----------~t~~----la~~~~v~ 316 (852)
T PRK11498 297 ILDDGGRE----------EFRQ----FAQEVGVK 316 (852)
T ss_pred EEeCCCCh----------HHHH----HHHHCCcE
Confidence 99999998 4444 68888765
No 13
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=97.77 E-value=7.5e-05 Score=68.13 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=47.4
Q ss_pred CCCC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHH
Q 029718 35 TGAP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS 93 (189)
Q Consensus 35 ~~~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa 93 (189)
..+| +|+||++ ||. ..+.+++-|+...+||.+++.++|.|||+++=|...+.+++
T Consensus 46 ~~~P~vsVIIP~y---Ne~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~ 102 (439)
T TIGR03111 46 GKLPDITIIIPVY---NSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ 102 (439)
T ss_pred CCCCCEEEEEEeC---CCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH
Confidence 3456 9999999 787 67889999999999999999999999999998877666543
No 14
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00023 Score=62.44 Aligned_cols=49 Identities=31% Similarity=0.389 Sum_probs=44.2
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEA 92 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EA 92 (189)
+|+||++ ||++.++.+|+-|+.+.|||. +.|+|.|||+++-|+.-+.|.
T Consensus 57 sviiP~y---nE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~ 105 (439)
T COG1215 57 SVIIPAY---NEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEEL 105 (439)
T ss_pred EEEEecC---CCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHH
Confidence 9999999 999999999999999999997 999999999999666655443
No 15
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=97.15 E-value=0.0003 Score=58.50 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=39.2
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCC--------CCccEEEecCCCcch
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYP--------TEKLSVYLSDDAAHD 83 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP--------~~kl~~YlsDDg~s~ 83 (189)
|.||.+ ||++.+..+||-|+++.||| .+|+-|+|.|||+++
T Consensus 1 v~ip~y---NE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d 49 (244)
T cd04190 1 VCVTMY---NEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK 49 (244)
T ss_pred CEEeee---cCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc
Confidence 679999 99999999999999999999 899999999999998
No 16
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.61 E-value=0.0066 Score=52.24 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=41.6
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhc---cCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHc
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMA---YDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKF 106 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a---~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~ 106 (189)
|+||++ +|++.++.+|+.|... .+++..++.|||+|||..+-. .+.|.+++++ +|+++
T Consensus 3 IliP~~---ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~--~~~~~~~~~~----l~~~~ 63 (254)
T cd04191 3 IVMPVY---NEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDI--WLAEEAAWLD----LCEEL 63 (254)
T ss_pred EEEeCC---CCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHH--HHHHHHHHHH----HHHHh
Confidence 799999 9999999999988653 334434699999999987621 1244444444 78776
No 17
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=96.55 E-value=0.017 Score=57.12 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=44.5
Q ss_pred CcEeeCCCCCCCChhHHHHh----HHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcC
Q 029718 39 SRTGSHRDPKTEQPIMVINT----VLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFY 107 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nT----vls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~ 107 (189)
+|+||+| ||++..|..+ ..|+.+.||| +++.+||+|||..+-+-. .|-..+++ +|++++
T Consensus 127 aVliP~y---NEd~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~e~~~~~~----L~~~~~ 189 (691)
T PRK05454 127 AILMPIY---NEDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--AEEAAWLE----LRAELG 189 (691)
T ss_pred EEEEeCC---CCChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--HHHHHHHH----HHHhcC
Confidence 9999999 8999765444 4567778897 589999999999985532 33334555 999986
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.45 E-value=0.0069 Score=47.96 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=41.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYA 88 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~a 88 (189)
.|.||++ ||++..+..++-|+++-+||.+++.++|.|||.++-|..-
T Consensus 4 sviip~~---n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~ 50 (234)
T cd06421 4 DVFIPTY---NEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRAL 50 (234)
T ss_pred EEEEecC---CCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHH
Confidence 5889999 8888889999999999999999999999999988755443
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.15 E-value=0.012 Score=46.17 Aligned_cols=47 Identities=34% Similarity=0.333 Sum_probs=40.4
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
|.|||+ +|+ ..+..|+-|++..+||.+++-++|.|||.++-|...+.
T Consensus 1 viip~~---n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~ 47 (229)
T cd04192 1 VVIAAR---NEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47 (229)
T ss_pred CEEEec---CcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH
Confidence 689998 776 66899999999999999999999999999887766544
No 20
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=96.07 E-value=0.02 Score=52.27 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=42.2
Q ss_pred CC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 37 AP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 37 ~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.| .|+||++ ||+.. +..|+-|++..+|| ++.++|.|||+++-|...+.+
T Consensus 74 ~p~vsViIP~y---NE~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~ 124 (444)
T PRK14583 74 HPLVSILVPCF---NEGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA 124 (444)
T ss_pred CCcEEEEEEeC---CCHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 45 8999999 89865 57999999999999 589999999999987766554
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.90 E-value=0.037 Score=49.28 Aligned_cols=47 Identities=26% Similarity=0.165 Sum_probs=40.1
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.||++ ||+ ..+..|+-|+++.+|| +..+.|.|||.++-|...+.+
T Consensus 57 sViIp~y---ne~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~ 103 (420)
T PRK11204 57 SILVPCY---NEG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR 103 (420)
T ss_pred EEEEecC---CCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH
Confidence 9999999 886 4578999999999999 688999999999977665544
No 22
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=95.86 E-value=0.015 Score=45.46 Aligned_cols=45 Identities=29% Similarity=0.313 Sum_probs=38.9
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYA 88 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~a 88 (189)
|+||++ ||. ..+..|+-|+...+||.+++.++|.|||+++-|...
T Consensus 1 VvIp~~---ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~ 45 (183)
T cd06438 1 ILIPAH---NEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQV 45 (183)
T ss_pred CEEecc---chH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHH
Confidence 689999 888 567899999999999998999999999999866543
No 23
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.74 E-value=0.046 Score=49.01 Aligned_cols=51 Identities=31% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 36 GAP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 36 ~~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
..| .|.||++ ||. .....++-|+++-+||. ++.+.|.|||.++-|..-+.+
T Consensus 38 ~~p~VSVIIpa~---Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~ 90 (384)
T TIGR03469 38 AWPAVVAVVPAR---NEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA 90 (384)
T ss_pred CCCCEEEEEecC---CcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH
Confidence 355 8999999 887 44678999999999995 589999999999977665554
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.60 E-value=0.025 Score=43.86 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=39.1
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.|||+ |++ ..+..++-|++...|| ++-++|.|||.++-|...+.+
T Consensus 1 sIvIp~y---n~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~ 47 (214)
T cd04196 1 AVLMATY---NGE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKE 47 (214)
T ss_pred CEEEEec---CcH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHH
Confidence 3789999 777 5568999999999998 799999999999977665443
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.44 E-value=0.028 Score=45.94 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=42.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.||++ ||. ..+..|+-|++..+||.+++-+.|.|||.++-|..-+.+
T Consensus 4 sIiIp~~---Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~ 52 (241)
T cd06427 4 TILVPLY---KEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA 52 (241)
T ss_pred EEEEecC---CcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH
Confidence 5889999 887 567899999999999998999999999999977765544
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.81 E-value=0.067 Score=42.87 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=37.5
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITF 86 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~ 86 (189)
|+|||+ ||++.++..++-|++..+||. ..++|.|||..+-|.
T Consensus 2 iiip~~---ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~ 43 (236)
T cd06435 2 IHVPCY---EEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEAL 43 (236)
T ss_pred eeEeeC---CCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhH
Confidence 789999 999889999999999999984 778999999988665
No 27
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=94.74 E-value=0.072 Score=42.96 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=41.3
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEA 92 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EA 92 (189)
.|.||++ ||.- .+..++-|+++.+||.+++-+.|.|| +++-|+..+.+.
T Consensus 4 SViIp~y---Ne~~-~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~ 52 (232)
T cd06437 4 TVQLPVF---NEKY-VVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI 52 (232)
T ss_pred EEEEecC---CcHH-HHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH
Confidence 4789999 8865 56899999999999999999999998 888777766653
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=94.49 E-value=0.075 Score=42.98 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=40.9
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
-|.|+|+ ||. ..+..++-|+.+.+||.+++-+.|.|||+++-|...+.
T Consensus 32 sVvip~~---n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~ 79 (251)
T cd06439 32 TIIIPAY---NEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR 79 (251)
T ss_pred EEEEecC---CcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH
Confidence 8999999 665 55789999999999999889999999999987665444
No 29
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.75 E-value=0.15 Score=40.53 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=39.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
.|.|+|+ +++. .+..++-|+++.+||..+..++|.|||+++-|..-+.
T Consensus 3 sIiip~~---n~~~-~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~ 50 (249)
T cd02525 3 SIIIPVR---NEEK-YIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ 50 (249)
T ss_pred EEEEEcC---Cchh-hHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH
Confidence 4789999 7764 5699999999999998899999999999986644443
No 30
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.32 E-value=0.42 Score=42.64 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=40.3
Q ss_pred CCC--CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 36 GAP--SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 36 ~~p--DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
..| .|.||++ ||.+. +..++-|+++.|||. +-+.|.||+.++-|...+.
T Consensus 39 ~~p~VSViiP~~---nee~~-l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~ 89 (373)
T TIGR03472 39 AWPPVSVLKPLH---GDEPE-LYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR 89 (373)
T ss_pred CCCCeEEEEECC---CCChh-HHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH
Confidence 356 9999999 99875 568999999999996 7888889998887765443
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.16 E-value=0.21 Score=36.74 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=38.4
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEA 92 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EA 92 (189)
|.|+++ ++ +..+.+|+-|+....+ ....++|.|||+..-|...+.+.
T Consensus 1 vii~~~---~~-~~~l~~~l~sl~~~~~--~~~~iiivdd~s~~~~~~~~~~~ 47 (166)
T cd04186 1 IIIVNY---NS-LEYLKACLDSLLAQTY--PDFEVIVVDNASTDGSVELLREL 47 (166)
T ss_pred CEEEec---CC-HHHHHHHHHHHHhccC--CCeEEEEEECCCCchHHHHHHHh
Confidence 578888 77 5778999999999888 46789999999998777666554
No 32
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.04 E-value=0.21 Score=37.81 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=37.2
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
|.|+|+ |++ ..+..++.|+++-.||. +.+.|.|||.++-|..-+.
T Consensus 2 ivi~~~---n~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~ 46 (202)
T cd06433 2 IITPTY---NQA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIK 46 (202)
T ss_pred EEEecc---chH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHH
Confidence 789998 776 67789999999998875 8899999999987765444
No 33
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.73 E-value=0.23 Score=35.74 Aligned_cols=46 Identities=33% Similarity=0.372 Sum_probs=37.6
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.|||+ +++ ..+.+|+-|++.-.| ....++|.|||+++-|..-+.+
T Consensus 1 Viip~~---n~~-~~l~~~l~sl~~q~~--~~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAY---NEE-AVIERTIESLLALDY--PKLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred Ceeccc---ChH-HHHHHHHHHHHhCCC--CceEEEEEeCCCccchHHHHHH
Confidence 578998 777 788899999999888 4678999999999877765544
No 34
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=91.82 E-value=0.23 Score=39.49 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.1
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
+|.|||+ ||++..+..|+-|+.+.+ ...++|.|||.++-|...|.+
T Consensus 3 sVvIp~~---ne~~~~l~~~l~sl~~q~----~~eiivvdd~s~d~~~~~l~~ 48 (235)
T cd06434 3 TVIIPVY---DEDPDVFRECLRSILRQK----PLEIIVVTDGDDEPYLSILSQ 48 (235)
T ss_pred EEEEeec---CCChHHHHHHHHHHHhCC----CCEEEEEeCCCChHHHHHHHh
Confidence 5889999 999899999999999987 467999999999877766643
No 35
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.66 E-value=0.21 Score=36.18 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=35.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS 93 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa 93 (189)
.|.|||+ |+ +..+..|+-|++.. ......++|.|||+++-|...+.+..
T Consensus 1 Svvip~~---n~-~~~l~~~l~sl~~q--~~~~~eiivvdd~s~d~~~~~~~~~~ 49 (169)
T PF00535_consen 1 SVVIPTY---NE-AEYLERTLESLLKQ--TDPDFEIIVVDDGSTDETEEILEEYA 49 (169)
T ss_dssp EEEEEES---S--TTTHHHHHHHHHHH--SGCEEEEEEEECS-SSSHHHHHHHHH
T ss_pred CEEEEee---CC-HHHHHHHHHHHhhc--cCCCEEEEEecccccccccccccccc
Confidence 3789999 66 56777888888887 44578889999999887765555543
No 36
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.49 E-value=0.084 Score=41.96 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=32.5
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYA 88 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~a 88 (189)
.|.||++ +|+. .+..++-|+++.+| .++.++|.|||.++-|...
T Consensus 4 ~Vvip~~---~~~~-~l~~~l~sl~~~~~--~~~~v~vvd~~~~~~~~~~ 47 (228)
T PF13641_consen 4 SVVIPAY---NEDD-VLRRCLESLLAQDY--PRLEVVVVDDGSDDETAEI 47 (228)
T ss_dssp EEE--BS---S-HH-HHHHHHHHHTTSHH--HTEEEEEEEE-SSS-GCTT
T ss_pred EEEEEec---CCHH-HHHHHHHHHHcCCC--CCeEEEEEECCCChHHHHH
Confidence 5889998 8876 78889999999999 4599999999988766543
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.72 E-value=0.6 Score=36.95 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=37.7
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
.|.||++ ||... ...++-|+++-+||. +-+.|.|||+++-|...+.
T Consensus 4 sviip~~---n~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~ 49 (196)
T cd02520 4 SILKPLC---GVDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVR 49 (196)
T ss_pred EEEEecC---CCCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHH
Confidence 5889999 77765 578899999999986 8999999999986665443
No 38
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.68 E-value=0.52 Score=32.86 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=38.3
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.|||+ |++ .....++-|++.-.|+. .-+-|.|||.++-|-.-+.+
T Consensus 6 siiip~~---n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~ 52 (291)
T COG0463 6 SVVIPTY---NEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIE 52 (291)
T ss_pred EEEEecc---chh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHH
Confidence 5889999 766 88899999999998887 45999999999976654443
No 39
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.25 E-value=0.49 Score=40.22 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=43.0
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.|+|+ ||++..+..|+-|+++-.+|....-|.|.|||.++-|...+.+
T Consensus 2 IIIp~~---N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~ 50 (299)
T cd02510 2 VIIIFH---NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE 50 (299)
T ss_pred EEEEEe---cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH
Confidence 789999 8988999999999999988876679999999999988776655
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.67 E-value=0.9 Score=35.15 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.0
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.|+|+ +|.+..+.+|+-|++...||. ..+.|.|||.++-+...+.+
T Consensus 4 siii~~~---n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~ 51 (202)
T cd04184 4 SIVMPVY---NTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK 51 (202)
T ss_pred EEEEecc---cCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH
Confidence 4789999 777677899999999988874 67899999998755544443
No 41
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.63 E-value=0.61 Score=36.43 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=36.4
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|+|+|+ +++ ..+..++-|++...||. ..++|.|||.++-|...+.+
T Consensus 1 viI~~~---n~~-~~l~~~l~sl~~q~~~~--~eiiivD~~s~d~t~~~~~~ 46 (202)
T cd04185 1 AVVVTY---NRL-DLLKECLDALLAQTRPP--DHIIVIDNASTDGTAEWLTS 46 (202)
T ss_pred CEEEee---CCH-HHHHHHHHHHHhccCCC--ceEEEEECCCCcchHHHHHH
Confidence 678998 666 56799999999999984 46899999999866654443
No 42
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.36 E-value=0.9 Score=35.23 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=33.1
Q ss_pred cEeeCCCCCCCC-hhHHHHhHHHhhccCCCCCccEEEecCCCcchhh
Q 029718 40 RTGSHRDPKTEQ-PIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDIT 85 (189)
Q Consensus 40 vFV~T~DP~~Ep-~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t 85 (189)
|.|||+ |+. +.....|+-|+++-.||. ..+.|.|||++.=+
T Consensus 2 viip~~---n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d~ 43 (201)
T cd04195 2 VLMSVY---IKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQS 43 (201)
T ss_pred EEEEcc---ccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCchh
Confidence 789999 664 678999999999999984 46788899885533
No 43
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.18 E-value=0.61 Score=36.61 Aligned_cols=46 Identities=13% Similarity=-0.014 Sum_probs=37.3
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.|+++ +++. .+..++.|+++..| ....++|.|||..+-|...+.+
T Consensus 3 vii~~~---n~~~-~l~~~l~sl~~q~~--~~~evivvdd~s~d~~~~~~~~ 48 (221)
T cd02522 3 IIIPTL---NEAE-NLPRLLASLRRLNP--LPLEIIVVDGGSTDGTVAIARS 48 (221)
T ss_pred EEEEcc---CcHH-HHHHHHHHHHhccC--CCcEEEEEeCCCCccHHHHHhc
Confidence 788998 7776 57899999999888 5688999999998877665544
No 44
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=88.70 E-value=0.91 Score=34.51 Aligned_cols=48 Identities=17% Similarity=-0.004 Sum_probs=38.7
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.|+|+ +++ ..+..|+-|+....|+.....++|.|||+++-|...+.+
T Consensus 1 iii~~~---n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~ 48 (185)
T cd04179 1 VVIPAY---NEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE 48 (185)
T ss_pred Ceeccc---ChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH
Confidence 578998 665 567899999999988767889999999999877665544
No 45
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=88.49 E-value=0.9 Score=36.26 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=37.8
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.||++ |+. ..+..++-|+++-.|| +.+-+.|.|||+++-|...+.+
T Consensus 1 ViIp~y---n~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~i~~~ 47 (219)
T cd06913 1 IILPVH---NGE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAEIIEK 47 (219)
T ss_pred CEEeec---CcH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHHHHHH
Confidence 578998 554 5888899999999998 4689999999999877654433
No 46
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=88.45 E-value=1.7 Score=43.48 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=33.9
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhh-ccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVM-AYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~-a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
.|+||.+ ||. .++.+|+-+++ ..|||. +.+++.+|+..+-|...+.
T Consensus 66 sIlVPa~---nE~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~ 112 (727)
T PRK11234 66 AIMVPAW---NET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVD 112 (727)
T ss_pred EEEEecC---cch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHH
Confidence 9999999 998 46677887776 689996 8999996544444444433
No 47
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=87.46 E-value=0.92 Score=36.02 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=36.3
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
|.||++ ||. ..+..++-|+++.+ | ++-++|.|||+++-|...+.
T Consensus 1 ViIp~~---Ne~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCL---NEE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEecc---ccH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh
Confidence 689999 887 56788999999888 4 68899999999997776554
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=86.04 E-value=2.1 Score=32.55 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=35.1
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
|.|+++ |++ ..+..|+-|+++..|+ ...+.|.|||++.-|..-+.
T Consensus 1 ivip~~---n~~-~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~t~~~~~ 45 (182)
T cd06420 1 LIITTY---NRP-EALELVLKSVLNQSIL--PFEVIIADDGSTEETKELIE 45 (182)
T ss_pred CEEeec---CCh-HHHHHHHHHHHhccCC--CCEEEEEeCCCchhHHHHHH
Confidence 568888 676 4578999999998877 45788999999987655444
No 49
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=85.96 E-value=1.7 Score=41.63 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=41.2
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhh-ccCCCCCccEEEecCCCcchhhHHHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVM-AYDYPTEKLSVYLSDDAAHDITFYALIEAS 93 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~-a~dyP~~kl~~YlsDDg~s~~t~~al~EAa 93 (189)
.|+||.+ ||.- +...||-|++ ..||| ++.++|.||+..+-|...+.+.+
T Consensus 69 aIlIPA~---NE~~-vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~ 118 (504)
T PRK14716 69 AIFVPAW---READ-VIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA 118 (504)
T ss_pred EEEEecc---Cchh-HHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH
Confidence 9999999 9974 6888888865 68995 89999999999998888777643
No 50
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=84.41 E-value=3 Score=29.10 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=37.5
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASH 94 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~ 94 (189)
|.|+++ ++ +.....|+-|++...| ....+++.|||.+.-+...+.+..+
T Consensus 1 iii~~~---~~-~~~l~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~ 49 (156)
T cd00761 1 VIIPAY---NE-EPYLERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILEEYAK 49 (156)
T ss_pred CEEeec---Cc-HHHHHHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHHHHHh
Confidence 467777 55 4566899999999888 4677999999999877776665543
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.78 E-value=2.9 Score=32.89 Aligned_cols=43 Identities=14% Similarity=-0.051 Sum_probs=32.8
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFY 87 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~ 87 (189)
|.|||+ ||+.. +..++-|+....| ...+.++|.|||+++-|..
T Consensus 1 ViIp~y---n~~~~-l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~ 43 (224)
T cd06442 1 IIIPTY---NEREN-IPELIERLDAALK-GIDYEIIVVDDNSPDGTAE 43 (224)
T ss_pred CeEecc---chhhh-HHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHH
Confidence 678998 77644 5677778877777 3469999999999886654
No 52
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=81.38 E-value=4.7 Score=40.57 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=32.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhh-ccCCCCCccEEEe---cCCCcch
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVM-AYDYPTEKLSVYL---SDDAAHD 83 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~-a~dyP~~kl~~Yl---sDDg~s~ 83 (189)
.|+||-+ ||. .++..||-+++ .+||| ++-|+| .|||.+.
T Consensus 74 sIlVPa~---nE~-~VI~~~v~~ll~~ldYp--~~~I~v~~~~nD~~T~ 116 (703)
T PRK15489 74 AIMVPAW---KEY-DVIAKMIENMLATLDYR--RYVIFVGTYPNDAETI 116 (703)
T ss_pred EEEEeCC---CcH-HHHHHHHHHHHhcCCCC--CeEEEEEecCCCccHH
Confidence 9999999 997 67778888877 78999 578888 7998554
No 53
>PRK10018 putative glycosyl transferase; Provisional
Probab=80.56 E-value=3.5 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.0
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcc
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAH 82 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s 82 (189)
-|.|||+ |++..+ ..|+-|+++-.|| .+-+.|.|||.+
T Consensus 8 SVIip~y---N~~~~l-~~~l~Svl~Qt~~--~~EiIVVDDgS~ 45 (279)
T PRK10018 8 SIYMPTW---NRQQLA-IRAIKSVLRQDYS--NWEMIIVDDCST 45 (279)
T ss_pred EEEEEeC---CCHHHH-HHHHHHHHhCCCC--CeEEEEEECCCC
Confidence 6899999 888765 5899999999998 488999999987
No 54
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=78.90 E-value=3 Score=33.01 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=32.3
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCC--CCCccEEEecCCCcchhhHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDY--PTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dy--P~~kl~~YlsDDg~s~~t~~al~ 90 (189)
|.||++ ||.. .+..++-|++...+ +.....++|.|||+++-|..-+.
T Consensus 1 iiip~y---N~~~-~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~ 49 (211)
T cd04188 1 VVIPAY---NEEK-RLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVAR 49 (211)
T ss_pred CEEccc---ChHH-HHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHH
Confidence 578898 6663 34556666665443 55678999999999986654443
No 55
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=78.22 E-value=9.9 Score=33.89 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=33.8
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhcc------CCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAY------DYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~------dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
+|.||++ ||... +..++-++.+. ..|....-++|.|||+++-|..-+.
T Consensus 73 sVVIP~y---Ne~~~-i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~ 126 (333)
T PTZ00260 73 SIVIPAY---NEEDR-LPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAK 126 (333)
T ss_pred EEEEeeC---CCHHH-HHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHH
Confidence 8999999 77654 33444444432 3566678999999999998766543
No 56
>PRK10073 putative glycosyl transferase; Provisional
Probab=75.95 E-value=5.6 Score=35.25 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALI 90 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~ 90 (189)
.|.||+| |+. .....++-|+++-.|+ .+-+.|.|||.++-|..-+.
T Consensus 9 SVIIP~y---N~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~ 54 (328)
T PRK10073 9 SIIIPLY---NAG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAK 54 (328)
T ss_pred EEEEecc---CCH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHH
Confidence 7899999 665 5778999999999986 58899999999986655443
No 57
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=73.92 E-value=7.9 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=29.1
Q ss_pred cEeeCCCCCCCChhH--HHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 40 RTGSHRDPKTEQPIM--VINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~--~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
|.|+|+ +|+-.+ +..++.+...-.+ ....++|.|||+++-|...+.+
T Consensus 1 viIp~~---n~~~~l~~~l~sl~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~ 49 (181)
T cd04187 1 IVVPVY---NEEENLPELYERLKAVLESLG--YDYEIIFVDDGSTDRTLEILRE 49 (181)
T ss_pred CEEeec---CchhhHHHHHHHHHHHHHhcC--CCeEEEEEeCCCCccHHHHHHH
Confidence 578999 665322 3344444333222 3578999999999877655443
No 58
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=72.96 E-value=7.5 Score=31.91 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=31.2
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.||++ ||...+. .++-++.........+.+.|.|||.++-|...+.+
T Consensus 12 sVvIp~y---ne~~~l~-~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~ 60 (243)
T PLN02726 12 SIIVPTY---NERLNIA-LIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQ 60 (243)
T ss_pred EEEEccC---CchhhHH-HHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHH
Confidence 8999999 7765442 22222322211223789999999999977665544
No 59
>PRK10063 putative glycosyl transferase; Provisional
Probab=62.16 E-value=15 Score=31.19 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=35.4
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhcc-CCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAY-DYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~-dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.|+|+ |+.. ....|+-|+.+. ..+...+-+.|.|||.++-|..-+.+
T Consensus 4 SVIi~~y---N~~~-~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~ 53 (248)
T PRK10063 4 SVITVAF---RNLE-GIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLEN 53 (248)
T ss_pred EEEEEeC---CCHH-HHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHH
Confidence 4788999 7744 567888887754 23444789999999999977765443
No 60
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=61.92 E-value=15 Score=32.59 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=33.8
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIE 91 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~E 91 (189)
.|.||++ ||... +..++-|+....+......+.|.|||+++-|..-+.+
T Consensus 34 SVVIPay---Nee~~-I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~ 82 (306)
T PRK13915 34 SVVLPAL---NEEET-VGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAA 82 (306)
T ss_pred EEEEecC---CcHHH-HHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHH
Confidence 9999999 88754 4456666655433222458999999999987655443
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=53.43 E-value=27 Score=32.13 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=32.1
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcch
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHD 83 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~ 83 (189)
|.|.++ | .|..+..|+-|++....-.+..-+||++||.+.
T Consensus 4 Vlv~ay---N-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 4 VLVIAC---N-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred EEEEec---C-CHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 456666 3 468899999999987755678899999999886
No 62
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=45.78 E-value=12 Score=19.18 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=6.6
Q ss_pred EecCCCcc
Q 029718 75 YLSDDAAH 82 (189)
Q Consensus 75 YlsDDg~s 82 (189)
|.|+|||.
T Consensus 1 ~~S~D~G~ 8 (12)
T PF02012_consen 1 YYSTDGGK 8 (12)
T ss_dssp EEESSTTS
T ss_pred CEeCCCcc
Confidence 78999985
No 63
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=45.59 E-value=35 Score=27.84 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=28.2
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFY 87 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~ 87 (189)
|.|+|+ ||.. .+..++-|+... . -.+.|.|||+++-|..
T Consensus 4 vii~~~---Ne~~-~l~~~l~sl~~~--~---~eiivvD~gStD~t~~ 42 (229)
T cd02511 4 VVIITK---NEER-NIERCLESVKWA--V---DEIIVVDSGSTDRTVE 42 (229)
T ss_pred EEEEeC---CcHH-HHHHHHHHHhcc--c---CEEEEEeCCCCccHHH
Confidence 689999 6664 467777777654 1 1699999999986643
No 64
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=42.07 E-value=42 Score=26.56 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=27.9
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcch
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHD 83 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~ 83 (189)
+.|+|+ ||....+..|+-|+++- ...+.|.|||..+
T Consensus 1 ~vI~~y---n~~~~~l~~~l~sl~~q-----~~~iivvDn~s~~ 36 (237)
T cd02526 1 AVVVTY---NPDLSKLKELLAALAEQ-----VDKVVVVDNSSGN 36 (237)
T ss_pred CEEEEe---cCCHHHHHHHHHHHhcc-----CCEEEEEeCCCCc
Confidence 468888 88888999999999885 2457778887655
No 65
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=40.47 E-value=20 Score=24.79 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=16.8
Q ss_pred hhccCCCCCccEEEecCCC
Q 029718 62 VMAYDYPTEKLSVYLSDDA 80 (189)
Q Consensus 62 ~~a~dyP~~kl~~YlsDDg 80 (189)
++-+||-+++|+++|=|+|
T Consensus 34 ~vTmDyr~dRLnv~~D~~g 52 (60)
T PF11720_consen 34 AVTMDYRPDRLNVEVDDDG 52 (60)
T ss_pred cCcccCCCCcEEEEECCCC
Confidence 6678999999999998876
No 66
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=36.59 E-value=70 Score=28.36 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=33.7
Q ss_pred CcEeeCCCCCCCChhH--HHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHH
Q 029718 39 SRTGSHRDPKTEQPIM--VINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS 93 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~--~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa 93 (189)
.|.||++ ||...+ +...+.+++.- .....-+.|.|||.++-|...+.+.+
T Consensus 9 SVVIP~y---NE~~~i~~~l~~l~~~~~~--~~~~~EIIvVDDgS~D~T~~il~~~~ 60 (325)
T PRK10714 9 SVVIPVY---NEQESLPELIRRTTAACES--LGKEYEILLIDDGSSDNSAEMLVEAA 60 (325)
T ss_pred EEEEccc---CchhhHHHHHHHHHHHHHh--CCCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 7899999 776443 33444443321 12357899999999998887776644
No 67
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=35.39 E-value=25 Score=28.20 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=15.9
Q ss_pred HhHHHHHHcCCccCCccc
Q 029718 98 HWIPYCKKFYVEPRSPGA 115 (189)
Q Consensus 98 ~WvPfC~k~~v~pRaP~~ 115 (189)
..+-+|++-|++||.|.+
T Consensus 53 ~yle~C~~~g~EP~k~~S 70 (111)
T COG4226 53 DYLEFCKERGIEPRKPYS 70 (111)
T ss_pred HHHHHHHHcCCCCccccC
Confidence 677799999999999965
No 68
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=34.94 E-value=1.7e+02 Score=23.44 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccccHHHHH
Q 029718 54 MVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 133 (189)
Q Consensus 54 ~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~~~~e~~ 133 (189)
....|++..++..|-++.+.+|+.|=+++. |+. |..--.+.. -.+. .+..+=.+
T Consensus 53 ~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~-----------l~~----~~~~~~~~~---~~~~--------~~~~~~~~ 106 (205)
T PF01580_consen 53 TLLRTLLLSLALTYSPDDVQLYIIDPKGSD-----------LAP----LADLPHVAA---VAVA--------TDPEEILR 106 (205)
T ss_dssp HHHHHHHHHHHTT--TTTEEEEEE-TTSSC-----------CGG----GTT-TTBSS----S-B---------SHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEEcCCccc-----------cch----hhhhhhhcc---cccc--------ccHHHHHH
Confidence 345567777788888899999999988764 111 211111110 0011 11233445
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 029718 134 AIKKLYEDMENGIITAAKLG 153 (189)
Q Consensus 134 ~iK~~YEe~k~rIe~a~~~g 153 (189)
.++..+++|+.|.+-..+.|
T Consensus 107 ~l~~l~~em~~R~~~l~~~~ 126 (205)
T PF01580_consen 107 LLEELVEEMERRQALLREAG 126 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 78889999999997766544
No 69
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=33.25 E-value=24 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCccEEEecC--CCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCccccccc
Q 029718 69 TEKLSVYLSD--DAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQS 119 (189)
Q Consensus 69 ~~kl~~YlsD--Dg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~ 119 (189)
.+|..+|..- =|-++.+.|++.-.-.==+..||+|+|-.|..|-|.-+|-.
T Consensus 64 ~~r~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA 116 (227)
T KOG3177|consen 64 TNREKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKA 116 (227)
T ss_pred chHHHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCcee
Confidence 3444454332 25677777765444333456999999999999999777654
No 70
>PRK11039 putative dehydrogenase; Provisional
Probab=32.03 E-value=59 Score=26.68 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHHHHHHcCCc
Q 029718 88 ALIEASHFAEHWIPYCKKFYVE 109 (189)
Q Consensus 88 al~EAa~Fa~~WvPfC~k~~v~ 109 (189)
.-.+...|=..|+-||-++|..
T Consensus 114 EK~Q~N~FL~eWL~~CL~~G~~ 135 (140)
T PRK11039 114 EKHQINQFLADWLRYCLAHGAM 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc
Confidence 3477889999999999999954
No 71
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=30.92 E-value=39 Score=25.04 Aligned_cols=24 Identities=8% Similarity=0.451 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHcCCc
Q 029718 85 TFYALIEASHFAEHWIPYCKKFYVE 109 (189)
Q Consensus 85 t~~al~EAa~Fa~~WvPfC~k~~v~ 109 (189)
++|.+.|--.+.+ |-.|.|++|+.
T Consensus 1 ~~y~v~d~v~~~~-wk~~~R~LGls 24 (80)
T cd08313 1 LLYTVLDEVPPRR-WKEFVRRLGLS 24 (80)
T ss_pred CHHHHHHhCCHHH-HHHHHHHcCCC
Confidence 3677777777765 99999999964
No 72
>PF06853 DUF1249: Protein of unknown function (DUF1249); InterPro: IPR009659 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=30.46 E-value=76 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhHHHHHHcCCc
Q 029718 87 YALIEASHFAEHWIPYCKKFYVE 109 (189)
Q Consensus 87 ~al~EAa~Fa~~WvPfC~k~~v~ 109 (189)
..-.....|=..|+-||-++|..
T Consensus 95 deK~q~N~FL~eWL~~CL~~G~~ 117 (120)
T PF06853_consen 95 DEKWQLNRFLAEWLRYCLRHGHS 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc
Confidence 35677889999999999999953
No 73
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=29.99 E-value=32 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.0
Q ss_pred EEEecCCCcchh-hHHHHHHHHHHHH
Q 029718 73 SVYLSDDAAHDI-TFYALIEASHFAE 97 (189)
Q Consensus 73 ~~YlsDDg~s~~-t~~al~EAa~Fa~ 97 (189)
.||+-|--+..+ .|.++.||+++-.
T Consensus 3 ~V~~~d~~~~~i~~f~S~~eAa~~lg 28 (53)
T smart00497 3 PVYVYDLDGNLIGEFSSIREAAKYLG 28 (53)
T ss_pred cEEEEeCCCCEEEEecCHHHHHHHhC
Confidence 467777555555 8999999998743
No 74
>PRK06839 acyl-CoA synthetase; Validated
Probab=29.88 E-value=1e+02 Score=27.21 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.4
Q ss_pred hHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCccccccc
Q 029718 58 TVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQS 119 (189)
Q Consensus 58 Tvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~ 119 (189)
-++.-.|..|| +|+++. +++..+||..|.+.+..-..| +.++.|+.+..+-+.++.
T Consensus 6 ~~~~~~a~~~p-~~~a~~---~~~~~~ty~~l~~~~~~la~~--L~~~~g~~~~~~V~i~~~ 61 (496)
T PRK06839 6 YWIEKRAYLHP-DRIAII---TEEEEMTYKQLHEYVSKVAAY--LIYELNVKKGERIAILSQ 61 (496)
T ss_pred HHHHHHHHHCC-CCeEEE---ECCceEEHHHHHHHHHHHHHH--HHHhcCCCCCCEEEEECC
Confidence 35566677788 566655 346889999987766555544 455678887776666554
No 75
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=28.77 E-value=64 Score=27.47 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=58.6
Q ss_pred CccCCchhhHHHHHHHHH-----hhccccCCCCCcc--cC-------------CCCCCcEeeCCCCCCCChhHHHHhHHH
Q 029718 2 EKMGDGHGLVCWELSYGL-----VFTGFLLKPLDGT--VS-------------TGAPSRTGSHRDPKTEQPIMVINTVLS 61 (189)
Q Consensus 2 ~~~~dg~~l~~~E~~f~~-----~W~p~~r~~~~~~--l~-------------~~~pDvFV~T~DP~~Ep~~~~~nTvls 61 (189)
.|++-||.+++-++.--+ .|+|....|++.+ ++ ++-|-..|++++=....+..|++||..
T Consensus 13 dP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~g~sYT~dTl~~ 92 (197)
T COG1057 13 DPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIKRGGPSYTIDTLEH 92 (197)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHHcCCCcchHHHHHH
Confidence 589999999888877665 6777777776652 21 122367788988899999999999999
Q ss_pred hhccCCCCCccEEEecCC
Q 029718 62 VMAYDYPTEKLSVYLSDD 79 (189)
Q Consensus 62 ~~a~dyP~~kl~~YlsDD 79 (189)
+...-+|..++.--+=-|
T Consensus 93 ~~~~~~p~~~~~fIiGaD 110 (197)
T COG1057 93 LRQEYGPDVELYFIIGAD 110 (197)
T ss_pred HHHHhCCCCcEEEEEehH
Confidence 988888877776655444
No 76
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=28.18 E-value=99 Score=28.81 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=28.1
Q ss_pred HHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccccC
Q 029718 54 MVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQSI 120 (189)
Q Consensus 54 ~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~ 120 (189)
+....+..++ ..+|-..+++||- +|||. -+|++++|...
T Consensus 33 ~~~~~~~~~~-~~~~~~~~~LYvH----------------------IPFC~-----~~C~yC~~~~~ 71 (453)
T PRK09249 33 FGEEDYLQAL-ARYPERPLSLYVH----------------------IPFCR-----SLCYYCGCNKI 71 (453)
T ss_pred CCHHHHHHHH-hcCCCCceEEEEE----------------------eCCcc-----ccCCCCCCccc
Confidence 3455566666 3577778888886 79994 57899998654
No 77
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.09 E-value=5.2e+02 Score=26.54 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=45.1
Q ss_pred CcEeeCCCCCCCChhHHHHhH---HHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccC
Q 029718 39 SRTGSHRDPKTEQPIMVINTV---LSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPR 111 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTv---ls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pR 111 (189)
-+.+||| ||.+.-|.--+ ...+|--=-.+..-.||+-|...+ =.++.|...|++ ||++.+-+-+
T Consensus 147 AilmPiy---nEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dp--dialAEq~a~~~----l~~e~~g~~~ 213 (736)
T COG2943 147 AILMPIY---NEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDP--DIALAEQKAWAE----LCRELGGEGN 213 (736)
T ss_pred eEEeecc---ccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCc--hhhhhHHHHHHH----HHHHhCCCCc
Confidence 7899999 99987664322 223444445678889988776665 247888888888 9999885443
No 78
>PF04580 Pox_D3: Chordopoxvirinae D3 protein ; InterPro: IPR007660 This is a family of Chordopoxvirinae D3 protein. The conserved region occupies the entire length of D3 protein.
Probab=26.94 E-value=3.2e+02 Score=24.65 Aligned_cols=60 Identities=13% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCCCCccEEEecCCCcchhhHHHH----HHHHHHHHHhHHHHHHcCCccCCcccccccCCCCCccccHHHHHHHHHHHHH
Q 029718 66 DYPTEKLSVYLSDDAAHDITFYAL----IEASHFAEHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKKLYED 141 (189)
Q Consensus 66 dyP~~kl~~YlsDDg~s~~t~~al----~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~~~~e~~~iK~~YEe 141 (189)
.|..+|..|.|+=|....+.+-.+ --=-.|+.-| |+.+.+ ....|=++||+.|++
T Consensus 183 ~~~~~k~~~iv~~~d~d~ikL~~~~y~r~~f~aFv~aW--f~~Ql~-------------------~~~~enekv~~~~~~ 241 (246)
T PF04580_consen 183 PFRIDKWTVIVKFNDYDNIKLITFCYDRNKFRAFVYAW--FNSQLS-------------------NNKEENEKVKKAFDE 241 (246)
T ss_pred ccCcceEEEEeecCChhhHHHHHHhcCHHHHHHHHHHH--HHhhhc-------------------cCchhhHHHHHHHHH
Confidence 577889999999443333322211 0111344455 554443 124577899999999
Q ss_pred HHHHH
Q 029718 142 MENGI 146 (189)
Q Consensus 142 ~k~rI 146 (189)
.+.+|
T Consensus 242 ~~~~I 246 (246)
T PF04580_consen 242 VRKLI 246 (246)
T ss_pred HHhhC
Confidence 98876
No 79
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.78 E-value=98 Score=19.04 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCh
Q 029718 136 KKLYEDMENGIITAAK-LGRIPE 157 (189)
Q Consensus 136 K~~YEe~k~rIe~a~~-~g~vp~ 157 (189)
+.+|-+|-.|+.+..+ .|+.|.
T Consensus 7 ~~~~~d~a~rv~~f~~~ngRlPn 29 (33)
T PF09373_consen 7 KEEYLDMASRVNNFYESNGRLPN 29 (33)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Confidence 4588999999998754 677664
No 80
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=26.61 E-value=94 Score=21.04 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHHHHcCCccCC
Q 029718 87 YALIEASHFAEHWIPYCKKFYVEPRS 112 (189)
Q Consensus 87 ~al~EAa~Fa~~WvPfC~k~~v~pRa 112 (189)
.|+.|+.+.++.=.-|=++|||.|++
T Consensus 12 ~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 12 KAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 47899999999889999999999976
No 81
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=26.31 E-value=1.7e+02 Score=20.81 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=28.6
Q ss_pred CcchhhHHHHHHHHH----H-----HHHhHHHHHHcCCccCCcccccccCCCCCccccHHHHHHHHHHHHHH
Q 029718 80 AAHDITFYALIEASH----F-----AEHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKKLYEDM 142 (189)
Q Consensus 80 g~s~~t~~al~EAa~----F-----a~~WvPfC~k~~v~pRaP~~YFs~~~~~~~~~~~~e~~~iK~~YEe~ 142 (189)
||.+|.++.|--+-. | .+.|--.|+++|+.+.+... ...+|+.|++.
T Consensus 32 ~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~----------------~~~L~~~Y~~~ 87 (92)
T PF01388_consen 32 GGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSA----------------AQQLRQHYEKY 87 (92)
T ss_dssp TTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHH----------------HHHHHHHHHHH
T ss_pred CCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcH----------------HHHHHHHHHHH
Confidence 667777776543332 1 34799999999987633222 45677778764
No 82
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=25.89 E-value=1.1e+02 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=24.7
Q ss_pred HhHHHHHHcCCccCC-cccccccCCCCCccccHHHHHHHHHHHHHHHHH
Q 029718 98 HWIPYCKKFYVEPRS-PGAYFQSISEPHEAEEAKGFLAIKKLYEDMENG 145 (189)
Q Consensus 98 ~WvPfC~k~~v~pRa-P~~YFs~~~~~~~~~~~~e~~~iK~~YEe~k~r 145 (189)
.|--|||+|++.-.- |.-=|.. ..+|...|++.||.++.+
T Consensus 74 ~~~~~~kq~~~~f~~~g~l~vA~--------~e~e~~~L~~l~~~~~~n 114 (429)
T COG0579 74 NEFAICKQLGIPFINCGKLSVAT--------GEEEVERLEKLYERGKAN 114 (429)
T ss_pred HHHHHHHHhCCcccccCeEEEEE--------ChHHHHHHHHHHHHHhhC
Confidence 557799999944221 1111111 256888899999988753
No 83
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=25.17 E-value=40 Score=23.39 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.8
Q ss_pred hHHHHHHcCCccCCcccc
Q 029718 99 WIPYCKKFYVEPRSPGAY 116 (189)
Q Consensus 99 WvPfC~k~~v~pRaP~~Y 116 (189)
.--.||++|| +|-|.+=
T Consensus 32 LKr~CR~~GI-~RWP~Rk 48 (52)
T PF02042_consen 32 LKRRCRRLGI-PRWPYRK 48 (52)
T ss_pred HHHHHHHcCC-CCCCchh
Confidence 3348999997 8888653
No 84
>COG3151 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.61 E-value=1e+02 Score=25.76 Aligned_cols=37 Identities=32% Similarity=0.661 Sum_probs=25.9
Q ss_pred cCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCc
Q 029718 65 YDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSP 113 (189)
Q Consensus 65 ~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP 113 (189)
+|||..|+.. -| .-..-..|--.|+-||-++|. .++|
T Consensus 107 y~ypn~~~hq--~d---------ek~q~N~FLgdWL~ycla~G~-~~~p 143 (147)
T COG3151 107 YDYPNKKLHQ--RD---------EKHQINQFLGDWLRYCLAHGH-MAIP 143 (147)
T ss_pred cCCCCccccC--cc---------HHHHHHHHHHHHHHHHHHcCC-cccc
Confidence 4999887754 22 233446788899999999994 3444
No 85
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=23.04 E-value=16 Score=28.71 Aligned_cols=8 Identities=50% Similarity=1.834 Sum_probs=6.5
Q ss_pred HHhHHHHH
Q 029718 97 EHWIPYCK 104 (189)
Q Consensus 97 ~~WvPfC~ 104 (189)
|-|+||||
T Consensus 7 rgwipfcr 14 (113)
T PRK13711 7 RGWIPFCR 14 (113)
T ss_pred ccccceeE
Confidence 45999997
No 86
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=23.00 E-value=1.4e+02 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=25.8
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcch
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHD 83 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~ 83 (189)
||+...|..-.+ .+.-++.|++.-. ...+.+||.+||=|.
T Consensus 3 i~~~~~~~~y~~--~~~v~l~Sll~nn--~~~~~fyil~~~is~ 42 (248)
T cd06432 3 IFSVASGHLYER--FLRIMMLSVMKNT--KSPVKFWFIKNFLSP 42 (248)
T ss_pred EEEEcCcHHHHH--HHHHHHHHHHHcC--CCCEEEEEEeCCCCH
Confidence 455544333334 3455667776543 368999999999887
No 87
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=22.34 E-value=1.2e+02 Score=26.37 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=35.2
Q ss_pred ChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHH----------------HHHhHHHHHHcCCcc
Q 029718 51 QPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHF----------------AEHWIPYCKKFYVEP 110 (189)
Q Consensus 51 p~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~F----------------a~~WvPfC~k~~v~p 110 (189)
.++-+.-.++..||+ |=-+.|..+|+||.|-.+.+..+-+.... -+..+-+|+++||+.
T Consensus 15 ~~~~~ik~~id~ma~-~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~V 89 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAY-YKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEV 89 (351)
T ss_dssp B-HHHHHHHHHHHHH-TT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EE
T ss_pred CCHHHHHHHHHHHHH-cCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCce
Confidence 445556667778887 77789999999996666554322221111 124566999999864
No 88
>PRK05852 acyl-CoA synthetase; Validated
Probab=22.07 E-value=2.7e+02 Score=25.27 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=39.4
Q ss_pred CCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHH-HHHHHhHHHHHHcCCccCCcccccc
Q 029718 47 PKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS-HFAEHWIPYCKKFYVEPRSPGAYFQ 118 (189)
Q Consensus 47 P~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa-~Fa~~WvPfC~k~~v~pRaP~~YFs 118 (189)
|..+|-.-+...++.-.+..+| +++++... ++...+||..|.+.+ ++|+ + =++.|+.+-.+-+-+.
T Consensus 9 ~~~~~~~~~l~~~l~~~a~~~p-~~~ai~~~-~~~~~~Ty~~l~~~~~~~a~-~---L~~~gv~~gd~V~i~~ 75 (534)
T PRK05852 9 PMASDFGPRIADLVEVAATRLP-EAPALVVT-ADRIAISYRDLARLVDDLAG-Q---LTRSGLLPGDRVALRM 75 (534)
T ss_pred chhhhhcccHHHHHHHHHHhCC-CCcEEEec-CCCCcccHHHHHHHHHHHHH-H---HHhcCCCCCCEEEEEC
Confidence 4444444444555555555665 78887653 445679999987754 5555 3 3568887765444443
No 89
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=21.96 E-value=1.6e+02 Score=25.43 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=38.5
Q ss_pred cEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHH
Q 029718 40 RTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEAS 93 (189)
Q Consensus 40 vFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa 93 (189)
+.|.|+ -+...+.+++-|+.+..||.+.+- +.|+|.++-|...+.+..
T Consensus 7 ~iiv~y----n~~~~l~~~l~~l~~~~~~~~~iv--~vDn~s~d~~~~~~~~~~ 54 (305)
T COG1216 7 IIIVTY----NRGEDLVECLASLAAQTYPDDVIV--VVDNGSTDGSLEALKARF 54 (305)
T ss_pred EEEEec----CCHHHHHHHHHHHhcCCCCCcEEE--EccCCCCCCCHHHHHhhc
Confidence 456776 345678899999999999987665 899999999988887763
No 90
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=21.02 E-value=2.4e+02 Score=22.71 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=59.6
Q ss_pred CcEeeCCCCCCCChhHHHHhHHHhhccCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCccCCcccccc
Q 029718 39 SRTGSHRDPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEPRSPGAYFQ 118 (189)
Q Consensus 39 DvFV~T~DP~~Ep~~~~~nTvls~~a~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~pRaP~~YFs 118 (189)
-|...+-||..-|-..=.--||--++-.|+..++.|+..|--..+ . ++++|||..-==...|.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-------------~----LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-------------A----IGDRFGVFRFPATLVFT 99 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-------------H----HHHHcCCccCCEEEEEE
Confidence 566677899999988888999999999998778999999976554 2 77899987543344443
Q ss_pred cCCCCCccc-cHHHHHHHHHHHHHHHHHHHHHHh
Q 029718 119 SISEPHEAE-EAKGFLAIKKLYEDMENGIITAAK 151 (189)
Q Consensus 119 ~~~~~~~~~-~~~e~~~iK~~YEe~k~rIe~a~~ 151 (189)
.. ..-+.- ....| ++++.+|+....
T Consensus 100 dG-k~v~~i~G~~~k-------~~l~~~I~~~L~ 125 (132)
T PRK11509 100 GG-NYRGVLNGIHPW-------AELINLMRGLVE 125 (132)
T ss_pred CC-EEEEEEeCcCCH-------HHHHHHHHHHhc
Confidence 32 211100 13344 566667776544
No 91
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=20.62 E-value=99 Score=27.58 Aligned_cols=68 Identities=25% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHHcCCccCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhcccCCCCCCCCCCCCCCccee
Q 029718 103 CKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKKLYEDMENGIITAAKLGRIPEEVRSKYKGFSQWDSFFSQRDHDTIL 182 (189)
Q Consensus 103 C~k~~v~pRaP~~YFs~~~~~~~~~~~~e~~~iK~~YEe~k~rIe~a~~~g~vp~~~~~~~~gfs~w~~~~~~~dHp~II 182 (189)
.+|+|-.|-.+-. |-..-+-. ..-.+++.+++++|..+..+|.+ +++ .=-|+-|+| .+||..|
T Consensus 53 ~~k~gkNP~VdTs-fLpDk~Re-~~E~~~Re~LRkE~~~~Qe~vK~--------eeI---~I~fsywDG----s~hrr~v 115 (239)
T PF04921_consen 53 KKKLGKNPTVDTS-FLPDKERE-EEEAQEREELRKEWLAKQEAVKA--------EEI---EIPFSYWDG----SGHRRTV 115 (239)
T ss_pred cccccCCCCCCcc-cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhC--------Cee---EEEEEEECC----CCCcceE
Confidence 4566666666555 32210000 00156788999999988877753 111 112788885 6888888
Q ss_pred Eeecc
Q 029718 183 QVCPI 187 (189)
Q Consensus 183 qVi~~ 187 (189)
+|=..
T Consensus 116 ~vKKG 120 (239)
T PF04921_consen 116 RVKKG 120 (239)
T ss_pred EEcCC
Confidence 87543
No 92
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=20.32 E-value=87 Score=26.97 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=31.2
Q ss_pred cCCCCCccEEEecCCCcchhhHHHHHHHHHHHHHhHHHHHHcCCcc
Q 029718 65 YDYPTEKLSVYLSDDAAHDITFYALIEASHFAEHWIPYCKKFYVEP 110 (189)
Q Consensus 65 ~dyP~~kl~~YlsDDg~s~~t~~al~EAa~Fa~~WvPfC~k~~v~p 110 (189)
+.|-..-++|-|-|=||.+ +|+..|=-|||+.++-.
T Consensus 58 rk~tkgnvtiklwD~gGq~----------rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 58 RKVTKGNVTIKLWDLGGQP----------RFRSMWERYCRGVSAIV 93 (186)
T ss_pred EEeccCceEEEEEecCCCc----------cHHHHHHHHhhcCcEEE
Confidence 4566778999999999999 99999999999987643
No 93
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=20.05 E-value=1.1e+02 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=28.1
Q ss_pred EEEecCCCcchhhHHH--HHH--HHHHHHHhHHHHHHcCCccCC
Q 029718 73 SVYLSDDAAHDITFYA--LIE--ASHFAEHWIPYCKKFYVEPRS 112 (189)
Q Consensus 73 ~~YlsDDg~s~~t~~a--l~E--Aa~Fa~~WvPfC~k~~v~pRa 112 (189)
.++|||||-..-.+.. +.. .-+..+..--.+.+|||+-..
T Consensus 21 ~~~ltDdG~Tl~~L~~~G~~~~~s~~R~~~l~~il~~~gv~~~~ 64 (90)
T PF08861_consen 21 SIRLTDDGYTLMNLSSSGIDIDRSKKRKKILNSILNGFGVELDE 64 (90)
T ss_pred eEEEecCHHHHHhHhHcCCccccchHHHHHHHHHHHHcCccccC
Confidence 4689999988776664 222 334445677799999998777
Done!