BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029719
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 30.8 bits (68), Expect = 0.46, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEV 51
+ E++ R+ L RQ K R D +EK K+ + + VEL + D+ +V
Sbjct: 636 LAEIINRICLPRQYLKARRNDEKEKTIKSMEKEMGKMVELALSESDTFRDV 686
>pdb|1HTJ|F Chain F, Structure Of The Rgs-Like Domain From Pdz-Rhogef
Length = 210
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 70 QELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLP-DSKS 116
Q+L + SRP F R+ + A SPLL E+ ++ P DS+S
Sbjct: 32 QDLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVYQQASPKDSRS 79
>pdb|1WTJ|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|1WTJ|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|2CWF|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWF|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWH|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
pdb|2CWH|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
Length = 343
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 99 LQRQLEEIAKEKLPDSKSAIENKRRKL--VVIGQDCVEPLQALRNAGH 144
L RQL + +E+LP + +E R +VI Q +E LQ L AGH
Sbjct: 298 LVRQLHGVGQERLPGDRRYLERARSMAHGIVIAQADLERLQEL--AGH 343
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 27/99 (27%)
Query: 54 NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPD 113
N + ++ +LQQE A SR V+ +L Q + K K+ D
Sbjct: 8 NDRPPGTGGVKRGRLQQEAAATGSR----------------VTVVLGAQWGDEGKGKVVD 51
Query: 114 SKSAIENKRRKLVVIGQDCVEPLQALRNAGHEVHMDGKE 152
L+ D V Q NAGH V +DGKE
Sbjct: 52 -----------LLATDADIVSRCQGGNNAGHTVVVDGKE 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,406,577
Number of Sequences: 62578
Number of extensions: 151416
Number of successful extensions: 395
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 17
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)