BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029719
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
japonica GN=Os04g0510400 PE=2 SV=2
Length = 832
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 142/186 (76%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++ DSEEE V+ KQ+KA
Sbjct: 644 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 703
Query: 61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
TS L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K + S S N
Sbjct: 704 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 763
Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
K + VVIGQD +EPLQAL+N+G EV + + EKRR ++ RRK+++EKK R+Q RK
Sbjct: 764 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 823
Query: 181 QRKKMK 186
+++ K
Sbjct: 824 EKRIAK 829
>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp.
indica GN=OsI_016050 PE=2 SV=2
Length = 832
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 142/186 (76%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
MP VM R++LARQIDKI RK+SQE A K+W +RNAE++ L+++ DSEEE V+ KQ+KA
Sbjct: 644 MPAVMNRLTLARQIDKITRKNSQENANKSWLQRNAESMGLLLETSDSEEERVQGHKQRKA 703
Query: 61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
TS L+KLQQ+L+ +L RPLQPKTFSR YLAGAGVSPLLQ+QLEE++K + S S N
Sbjct: 704 TSANLQKLQQDLSELLQRPLQPKTFSRRYLAGAGVSPLLQKQLEELSKRNVKGSASVNAN 763
Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
K + VVIGQD +EPLQAL+N+G EV + + EKRR ++ RRK+++EKK R+Q RK
Sbjct: 764 KGSRFVVIGQDQIEPLQALQNSGQEVCVSIDKQREKRRLAENWRRKKQKEKKSTREQKRK 823
Query: 181 QRKKMK 186
+++ K
Sbjct: 824 EKRIAK 829
>sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana
GN=RH13 PE=2 SV=3
Length = 826
Score = 160 bits (405), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/186 (52%), Positives = 134/186 (72%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKA 60
MP V KR+ LARQI +I RK S+E A +TW +++AE++EL +D+ +SEEE V N +Q+KA
Sbjct: 636 MPAVRKRLYLARQIYEIERKGSRENADRTWLKKHAESMELELDDEESEEERVDNVRQRKA 695
Query: 61 TSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIEN 120
TS +L KL++EL+ +LS P+QPK FS Y AG GVS L+Q Q E+ K+K + +
Sbjct: 696 TSARLNKLKEELSTLLSHPMQPKKFSGRYFAGVGVSTLMQNQFVELKKQKQAQMQIGGDI 755
Query: 121 KRRKLVVIGQDCVEPLQALRNAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLRDQCRK 180
KRRKLVVI Q+C+EPLQALR G+E+ + AEKRR++ SL++KRKEEK RDQ R
Sbjct: 756 KRRKLVVINQNCIEPLQALRAGGNEMLKMKGQSAEKRRDIASLKKKRKEEKIGRRDQRRN 815
Query: 181 QRKKMK 186
Q+K+ K
Sbjct: 816 QKKQRK 821
>sp|Q54TD7|DDX24_DICDI ATP-dependent RNA helicase ddx24 OS=Dictyostelium discoideum
GN=ddx24 PE=3 SV=1
Length = 940
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVD------NYDSEE-EVVK 53
M V R+ LA++IDK+ + ++ +K+WF++ AE +++ +D N D E+ E +
Sbjct: 796 MEGVRDRIELAKEIDKLSHQSLKDNREKSWFKKQAEEMDIELDGDFFGENSDDEQSEDTR 855
Query: 54 NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPD 113
+QKK +LK+L+ +L +LSR L P+ S+ Y+ + + L + A +
Sbjct: 856 IAEQKK--QFKLKQLRAQLKHLLSRSLLPRGVSQSYITASAIQELESKSQSSAATDFSNK 913
Query: 114 SKSAIENKRRKLVV 127
+K+ I K ++L +
Sbjct: 914 AKNVIGKKAKQLAI 927
>sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo sapiens GN=DDX24 PE=1 SV=1
Length = 859
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVV--DNY-----DSEEEVVK 53
M V +R+ LARQI+K ++ Q +W E+ A A+E+ + D Y D +EE
Sbjct: 722 MDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEE--- 778
Query: 54 NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
R+QK Q+K L++EL +LS+PL ++ Y +G PLL
Sbjct: 779 RRRQK-----QMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLL 819
>sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo abelii GN=DDX24 PE=2 SV=1
Length = 859
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 4 VMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVV--DNY-----DSEEEVVKNRK 56
V +R+ LARQI+K ++ Q +W E+ A A+E+ + D Y D +EE R+
Sbjct: 725 VKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEE---RRR 781
Query: 57 QKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLL 99
QK Q+K L++EL +LS+PL ++ Y +G PLL
Sbjct: 782 QK-----QMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLL 819
>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mak5 PE=1 SV=1
Length = 648
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 7 RMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLK 66
R+ LA +I + RKD + ++ W + A+ EL V++ D E+ + + + Q+
Sbjct: 531 RVVLAHKIVNLTRKDGRVGREEAWLKSMAQ--ELGVESSDDEDPDLPKKSESSKNKKQIA 588
Query: 67 KLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLV 126
L+ EL +L ++ FS YL L E++A E++ D+
Sbjct: 589 HLRSELAPLLHEKIR-TGFSGRYLTSG-----LVNMAEKLANEEVHDN------------ 630
Query: 127 VIGQDCVEPLQALR 140
+IG D + L+ L+
Sbjct: 631 IIGMDSISALEVLQ 644
>sp|B0KD87|Y1980_THEP3 UPF0309 protein Teth39_1980 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=Teth39_1980 PE=3 SV=1
Length = 247
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 27 KKTWFERNAEAVELVVDNYDSEEE----VVKNRKQKKA---TSMQLKKLQQELNAMLSRP 79
K +++ERN + ++L+ D YD +E +V + + A +++ K+ ++ A+ S+
Sbjct: 84 KSSYYERNEDIIKLIFDRYDLRQEECIIIVSHSGRNGAPIEAAVEAKRRGLKVVAITSKE 143
Query: 80 LQPKTFSRH 88
+ KTFSRH
Sbjct: 144 YKQKTFSRH 152
>sp|A3DDI1|MIAA_CLOTH tRNA dimethylallyltransferase OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=miaA PE=3 SV=1
Length = 313
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 3 EVMKRMSLARQIDK---IMRKDSQEKAKK--TWFERNAEAVELVVDNYDSEEEVVKNRKQ 57
E++ + R +D+ I+++D++ AK+ TWF + + D +DS+E+++KN K
Sbjct: 245 EILSYLRGERSLDEAVEILKRDTRRYAKRQMTWFRKIENVYWINKDEFDSDEKIIKNLKY 304
Query: 58 KKAT 61
AT
Sbjct: 305 YLAT 308
>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=MAK5 PE=3 SV=1
Length = 763
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 16/108 (14%)
Query: 29 TWFERNAEAVELVVDNYDSEEEV-----VKNRKQKKATSM---QLKKLQQELNAMLSRPL 80
TW ++ AE +L VD DS++E+ KN +K+ ++ Q K L +LN +L RPL
Sbjct: 660 TWMKKAAE--DLGVD-IDSDDEIKDTFLAKNINKKRNKTLGKDQKKVLVAQLNDLLKRPL 716
Query: 81 QPKTFSRHYLAGAGV----SPLLQRQLEEIAKEKLPDSKSAIENKRRK 124
+ K + YL G V S + +R + I + D+ ++NK+RK
Sbjct: 717 R-KDMRQRYLTGGLVNLADSLVKKRGHDHIIGHEKTDALETLKNKKRK 763
>sp|Q2TAA8|TXIP1_HUMAN Translin-associated factor X-interacting protein 1 OS=Homo sapiens
GN=TSNAXIP1 PE=2 SV=1
Length = 658
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 117 AIENKRRKLVVIGQDCVEPLQALR-NAGHEVHMDGKEMAEKRRNLDSLRRKRKEEKKRLR 175
A+E + KLV + +DC E + A+R +E+ + KE + NL L K+ EEK L+
Sbjct: 115 ALEPLKAKLVTVNEDCNERILAMRAEEKYEISLLKKE----KMNLLKLIDKKNEEKISLQ 170
Query: 176 DQCRKQRKKM 185
+ K RK +
Sbjct: 171 SEVTKLRKNL 180
>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=MAK5 PE=3 SV=1
Length = 772
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVD-------NYDSEEEVVK 53
+P + +R+ +A +I+K + ++ K W AEA+++ +D + D + K
Sbjct: 619 LPSLRERLRVATEIEKAQHRATKATHDKNWLLEAAEAMDIDIDPSMLDGEDDDPDAPYYK 678
Query: 54 NRKQKKATS-MQLKKLQQELNAMLSRPLQPKTFSRHY 89
+KQ + ++ L+ EL A+L L + S Y
Sbjct: 679 PKKQDRGKGKASVENLKMELKALLQEKLVARGVSIRY 715
>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=MAK5 PE=3 SV=1
Length = 772
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVVD-------NYDSEEEVVK 53
+P + +R+ +A +I+K + ++ K W AEA+++ +D + D + K
Sbjct: 619 LPSLRERLRVATEIEKAQHRATKATHDKNWLLEAAEAMDIDIDPSMLDGEDDDPDAPYYK 678
Query: 54 NRKQKKATS-MQLKKLQQELNAMLSRPLQPKTFSRHY 89
+KQ + ++ L+ EL A+L L + S Y
Sbjct: 679 PKKQDRGKGKASVENLKMELKALLQEKLVARGVSIRY 715
>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus musculus GN=Ddx24 PE=1 SV=2
Length = 857
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 1 MPEVMKRMSLARQIDKIMRKDSQEKAKKTWFERNAEAVELVV-------DNYDSEEEVVK 53
M V +R+ LARQI+K ++ Q +W E+ A A+E+ + D +EE
Sbjct: 722 MDVVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKADQQEE--- 778
Query: 54 NRKQKKATSMQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSP 97
R+QK Q+K L+QEL +LS+PL + Y +G P
Sbjct: 779 RRRQK-----QMKMLKQELRHLLSQPLFQENLKTRYPTQSGRPP 817
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,789,115
Number of Sequences: 539616
Number of extensions: 2523301
Number of successful extensions: 17547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 678
Number of HSP's that attempted gapping in prelim test: 15760
Number of HSP's gapped (non-prelim): 1997
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)