Query 029719
Match_columns 189
No_of_seqs 123 out of 147
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 03:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o35a1 a.293.1.1 (A:2-80) Hyp 34.6 5 0.00036 27.4 0.6 19 28-46 46-64 (79)
2 d1b0aa2 c.58.1.2 (A:2-122) Tet 21.7 18 0.0013 25.1 1.7 55 28-92 50-111 (121)
3 d2ahob1 a.60.14.1 (B:85-175) E 21.6 18 0.0013 24.2 1.6 23 22-44 14-36 (91)
4 d1v4aa1 a.24.16.4 (A:287-437) 13.3 1.3E+02 0.0096 20.3 4.7 80 63-156 8-87 (151)
5 d1w85i_ a.9.1.1 (I:) E3/E1 bin 11.9 45 0.0033 19.5 1.5 14 31-44 8-21 (42)
6 d1l8ya_ a.21.1.1 (A:) Nucleola 11.2 42 0.0031 22.5 1.2 11 27-37 49-59 (84)
7 d1g2ha_ a.4.1.12 (A:) Transcri 10.9 34 0.0025 21.0 0.6 13 29-41 34-46 (61)
8 d2nlya1 c.6.2.7 (A:31-254) Hyp 10.3 90 0.0066 23.6 3.2 49 84-141 152-204 (224)
9 d1ecma_ a.130.1.1 (A:) Chorism 9.8 1E+02 0.0073 19.6 2.8 40 2-41 19-65 (91)
10 d1ixca1 a.4.5.37 (A:1-89) LysR 9.7 91 0.0066 19.8 2.6 27 69-95 36-62 (89)
No 1
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=34.64 E-value=5 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=16.2
Q ss_pred hhHHHHHHHhcCccccCCc
Q 029719 28 KTWFERNAEAVELVVDNYD 46 (189)
Q Consensus 28 ~sWlkkAAEeLgIdlDsDd 46 (189)
..|+..+|++.|+++|-|+
T Consensus 46 skWy~~~a~~~g~~~~~d~ 64 (79)
T d2o35a1 46 SNWYREAAEASGVPMSKEE 64 (79)
T ss_dssp HHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHcCCCCCHHH
Confidence 4699999999999988654
No 2
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=21.71 E-value=18 Score=25.13 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=34.4
Q ss_pred hhHHHHHHHhcCccccCCcchHHHHHHHHHhHHhHHHHHHHHHHHHH-------HhCCCCCCCCCccccccC
Q 029719 28 KTWFERNAEAVELVVDNYDSEEEVVKNRKQKKATSMQLKKLQQELNA-------MLSRPLQPKTFSRHYLAG 92 (189)
Q Consensus 28 ~sWlkkAAEeLgIdlDsDd~e~e~~~~~Kq~k~~k~~lk~LraeLk~-------LLSqPL~~kg~S~kYlT~ 92 (189)
-+|-.++|+++||....-.+.+. .+..++-..=.+|+. |+..|| |.++...++..
T Consensus 50 v~~k~k~a~~lGi~~~~~~l~~~---------~t~~~l~~~I~~lN~d~~v~GIlvqlPL-P~~i~~~~i~~ 111 (121)
T d1b0aa2 50 VASKRKACEEVGFVSRSYDLPET---------TSEAELLELIDTLNADNTIDGILVQLPL-PAGIDNVKVLE 111 (121)
T ss_dssp HHHHHHHHHHHTCEECCEEECTT---------CCHHHHHHHHHHHHTCTTCCEEEECSSC-CTTSCHHHHHT
T ss_pred HHHHHHHHHhhccceeeeecccc---------ccHHHHHHHHHHHhCCCchhhhhhcCCC-CCCcCHHHHHh
Confidence 36889999999998765443211 112233344445554 577895 68888887753
No 3
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=21.61 E-value=18 Score=24.19 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=17.9
Q ss_pred hhhhhhhhHHHHHHHhcCccccC
Q 029719 22 SQEKAKKTWFERNAEAVELVVDN 44 (189)
Q Consensus 22 ~k~k~e~sWlkkAAEeLgIdlDs 44 (189)
.+...-.+||+-+|+.+|+++++
T Consensus 14 k~~qka~~il~~vAek~g~~~ee 36 (91)
T d2ahob1 14 KKIQRLDKILELVSQKLKLSEKD 36 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHH
Confidence 44556679999999999997543
No 4
>d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
Probab=13.26 E-value=1.3e+02 Score=20.31 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccCCCCchhhHHhHHHHHHhhcCCcchhhhhcccCceeecccccchhHHHHhc
Q 029719 63 MQLKKLQQELNAMLSRPLQPKTFSRHYLAGAGVSPLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDCVEPLQALRNA 142 (189)
Q Consensus 63 ~~lk~LraeLk~LLSqPL~~kg~S~kYlT~ggv~~l~~~~~~~L~~~~v~~~~~~~~~k~~~~~viGq~~Ve~L~~Lr~~ 142 (189)
..+..||+.+..-.... - ...-=|.--||.+++-.--|+-.|.+ +..+..+.+...+++|..|...
T Consensus 8 ~~v~~MR~ri~~~~~~~-~-~~~dlK~~~GGL~DIEfi~Q~lqL~~------------~~~~p~~~~~~~~~~l~~l~~~ 73 (151)
T d1v4aa1 8 QSLRNMKGMIAREVRRR-G-LTDNIKLGAGGIREIEFIVQVFQLIR------------GGREPSLQSRSLLPTLSAIAEL 73 (151)
T ss_dssp HHHHHHHHHHHHHHHHH-C-SCCBTTTSTTSHHHHHHHHHHHHHHH------------TTTCGGGCCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc-C-CCCCcCCCCCceehHHHHHHHHHHHh------------ccCCccccCccHHHHHHHHHHc
Confidence 34666777764432211 1 11244566788898877777777777 3455566777777888888777
Q ss_pred CcccccchhHHHHH
Q 029719 143 GHEVHMDGKEMAEK 156 (189)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (189)
|---.-+....++-
T Consensus 74 g~l~~~~~~~L~~a 87 (151)
T d1v4aa1 74 HLLSENDAEQLRVA 87 (151)
T ss_dssp TSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 76555444444433
No 5
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.92 E-value=45 Score=19.52 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=11.5
Q ss_pred HHHHHHhcCccccC
Q 029719 31 FERNAEAVELVVDN 44 (189)
Q Consensus 31 lkkAAEeLgIdlDs 44 (189)
.++.|++.|||++.
T Consensus 8 arkla~e~gidl~~ 21 (42)
T d1w85i_ 8 VRKYAREKGVDIRL 21 (42)
T ss_dssp HHHHHHHTTCCTTT
T ss_pred HHHHHHHcCCCHHH
Confidence 47889999998874
No 6
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.16 E-value=42 Score=22.55 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=9.0
Q ss_pred hhhHHHHHHHh
Q 029719 27 KKTWFERNAEA 37 (189)
Q Consensus 27 e~sWlkkAAEe 37 (189)
.--|+++|||+
T Consensus 49 ki~wikkaaed 59 (84)
T d1l8ya_ 49 KLMWIKKAAED 59 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 34699999987
No 7
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=10.88 E-value=34 Score=21.04 Aligned_cols=13 Identities=8% Similarity=0.002 Sum_probs=11.1
Q ss_pred hHHHHHHHhcCcc
Q 029719 29 TWFERNAEAVELV 41 (189)
Q Consensus 29 sWlkkAAEeLgId 41 (189)
.|..+||+.|||.
T Consensus 34 gn~~~aA~~Lgis 46 (61)
T d1g2ha_ 34 PSTRKLAQRLGVS 46 (61)
T ss_dssp CSHHHHHHHTTSC
T ss_pred CCHHHHHHHHCCC
Confidence 4678999999994
No 8
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]}
Probab=10.32 E-value=90 Score=23.58 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCccccccCCCCc-hhhHHhHHHHHHhhcCCcchhhhhcccCceeecccc---cchhHHHHh
Q 029719 84 TFSRHYLAGAGVS-PLLQRQLEEIAKEKLPDSKSAIENKRRKLVVIGQDC---VEPLQALRN 141 (189)
Q Consensus 84 g~S~kYlT~ggv~-~l~~~~~~~L~~~~v~~~~~~~~~k~~~~~viGq~~---Ve~L~~Lr~ 141 (189)
..+..||.....+ ..+.+||+.++. -+.+.|.-.+|||-- -+-|++|+.
T Consensus 152 ~~rdvfLD~~~~~~~~I~~~l~~~~~---------~A~~~G~AI~IGH~~~p~p~Tl~~L~~ 204 (224)
T d2nlya1 152 ATRSIFLDNTHSSRKEVIKNMRKLAK---------KAKQGSEPIGIGHVGVRGDETYAGIRS 204 (224)
T ss_dssp EECCEESCCTTCCHHHHHHHHHHHHH---------HHHTTSCCEEEEECSTTHHHHHHHHGG
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHH---------HHHhcCcEEEEEeCCCCChHHHHHHHH
Confidence 3455667654443 347788877776 233578888999921 144555554
No 9
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=9.75 E-value=1e+02 Score=19.57 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHhcCcc
Q 029719 2 PEVMKRMSLARQIDKIMRKDSQ-------EKAKKTWFERNAEAVELV 41 (189)
Q Consensus 2 ~~IKeRV~LArqIdk~e~~~~k-------~k~e~sWlkkAAEeLgId 41 (189)
.-|.+|..||.+|...-..... +..=-+++...|...|++
T Consensus 19 ~Ll~~R~~l~~~I~~~K~~~~~~i~d~~RE~~il~~~~~~~~~~~l~ 65 (91)
T d1ecma_ 19 ALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLD 65 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHhhcCCcC
Confidence 4578999999999887655433 222233555666666664
No 10
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=9.72 E-value=91 Score=19.81 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCCCCCCCccccccCCCC
Q 029719 69 QQELNAMLSRPLQPKTFSRHYLAGAGV 95 (189)
Q Consensus 69 raeLk~LLSqPL~~kg~S~kYlT~ggv 95 (189)
=..|.+.+..|||-+.-+.-.||..|.
T Consensus 36 i~~LE~~lg~~Lf~R~~~~~~lT~~G~ 62 (89)
T d1ixca1 36 MQALEADLGVVLLERSHRGIELTAAGH 62 (89)
T ss_dssp HHHHHHHHTSCCBC-----CCBCHHHH
T ss_pred HHHHHhcCCceeeEecCCccCccHhHH
Confidence 345677789999976656666676554
Done!