Query 029720
Match_columns 189
No_of_seqs 113 out of 1098
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 2.2E-27 4.7E-32 197.0 21.6 174 9-185 46-220 (350)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 6.9E-27 1.5E-31 190.3 21.2 173 12-188 2-174 (302)
3 KOG1441 Glucose-6-phosphate/ph 99.9 9.8E-28 2.1E-32 194.1 9.4 184 5-189 10-195 (316)
4 KOG1444 Nucleotide-sugar trans 99.9 1.1E-21 2.4E-26 156.4 19.1 174 11-186 11-184 (314)
5 KOG1443 Predicted integral mem 99.9 9.5E-21 2.1E-25 149.9 12.9 175 10-186 14-191 (349)
6 PF08449 UAA: UAA transporter 99.8 4E-19 8.6E-24 144.9 18.4 169 17-189 6-184 (303)
7 PLN00411 nodulin MtN21 family 99.8 1.2E-17 2.7E-22 138.8 21.0 176 7-185 8-215 (358)
8 PF06027 DUF914: Eukaryotic pr 99.7 2.4E-16 5.3E-21 129.2 19.5 179 6-186 7-195 (334)
9 TIGR00688 rarD rarD protein. T 99.7 3.7E-16 8E-21 124.4 18.7 161 11-183 5-170 (256)
10 KOG1442 GDP-fucose transporter 99.7 8.6E-19 1.9E-23 137.0 3.2 172 12-184 28-210 (347)
11 PRK11272 putative DMT superfam 99.7 1.4E-15 3E-20 123.5 21.3 161 12-184 12-175 (292)
12 PRK11689 aromatic amino acid e 99.7 5.3E-16 1.1E-20 126.1 17.9 164 8-185 4-182 (295)
13 TIGR00950 2A78 Carboxylate/Ami 99.7 5.2E-16 1.1E-20 123.4 17.0 148 29-186 6-155 (260)
14 PRK11453 O-acetylserine/cystei 99.7 1.3E-15 2.9E-20 123.9 19.2 163 6-185 2-169 (299)
15 PRK15430 putative chlorampheni 99.7 4E-15 8.7E-20 121.0 18.8 161 11-183 11-173 (296)
16 PRK10532 threonine and homoser 99.6 1.4E-13 3E-18 111.8 19.7 171 2-186 2-175 (293)
17 COG5070 VRG4 Nucleotide-sugar 99.6 2.1E-14 4.5E-19 109.7 10.1 163 15-183 9-179 (309)
18 TIGR03340 phn_DUF6 phosphonate 99.5 7.3E-13 1.6E-17 106.9 17.5 155 24-183 13-168 (281)
19 KOG1582 UDP-galactose transpor 99.5 2.7E-13 5.8E-18 106.4 11.3 179 4-187 34-218 (367)
20 KOG1581 UDP-galactose transpor 99.5 4.6E-12 9.9E-17 100.8 16.4 147 39-189 47-202 (327)
21 PF00892 EamA: EamA-like trans 99.4 1.1E-12 2.3E-17 92.5 10.4 119 27-150 6-125 (126)
22 COG0697 RhaT Permeases of the 99.4 4.1E-11 8.9E-16 95.9 20.7 150 29-182 24-177 (292)
23 PF04142 Nuc_sug_transp: Nucle 99.4 5E-12 1.1E-16 100.1 12.8 109 78-186 16-141 (244)
24 KOG2765 Predicted membrane pro 99.4 8.1E-12 1.8E-16 101.9 13.1 100 86-185 166-273 (416)
25 KOG1580 UDP-galactose transpor 99.4 2E-12 4.4E-17 99.7 7.1 171 12-186 17-199 (337)
26 KOG3912 Predicted integral mem 99.3 2.6E-10 5.6E-15 90.1 14.5 170 20-189 11-206 (372)
27 PF13536 EmrE: Multidrug resis 99.2 7.4E-11 1.6E-15 82.7 9.6 106 48-155 2-110 (113)
28 TIGR00776 RhaT RhaT L-rhamnose 99.2 1.7E-09 3.6E-14 87.9 17.3 157 12-181 5-174 (290)
29 COG2510 Predicted membrane pro 99.2 2.8E-10 6E-15 79.9 10.5 131 16-150 7-138 (140)
30 KOG2234 Predicted UDP-galactos 99.2 1E-08 2.2E-13 83.6 20.3 164 22-186 25-210 (345)
31 TIGR00950 2A78 Carboxylate/Ami 99.0 2.2E-08 4.9E-13 79.4 16.5 131 13-147 129-260 (260)
32 KOG1583 UDP-N-acetylglucosamin 99.0 8.7E-10 1.9E-14 86.9 5.0 150 32-188 23-193 (330)
33 COG2962 RarD Predicted permeas 98.9 2.3E-07 5E-12 74.0 17.4 159 11-181 10-170 (293)
34 COG5006 rhtA Threonine/homoser 98.9 2.2E-07 4.8E-12 72.7 15.7 139 30-182 30-171 (292)
35 PLN00411 nodulin MtN21 family 98.8 3.8E-07 8.2E-12 76.2 17.1 122 29-152 206-329 (358)
36 PRK11272 putative DMT superfam 98.8 6E-07 1.3E-11 72.9 15.9 121 28-153 166-287 (292)
37 KOG4510 Permease of the drug/m 98.7 2.2E-09 4.8E-14 84.4 0.6 169 7-184 34-216 (346)
38 PF03151 TPT: Triose-phosphate 98.7 1.4E-06 3E-11 63.7 15.5 130 20-150 8-152 (153)
39 PRK10532 threonine and homoser 98.7 3.7E-06 7.9E-11 68.4 17.0 127 17-150 153-280 (293)
40 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.5E-06 3.2E-11 60.7 12.2 64 87-150 45-108 (111)
41 TIGR00817 tpt Tpt phosphate/ph 98.6 9.4E-07 2E-11 72.0 12.6 135 16-151 149-293 (302)
42 PRK11689 aromatic amino acid e 98.5 6.7E-06 1.4E-10 66.9 15.6 74 78-151 214-287 (295)
43 PRK11453 O-acetylserine/cystei 98.5 2E-05 4.4E-10 64.1 17.3 130 22-152 153-288 (299)
44 KOG2766 Predicted membrane pro 98.5 6.4E-09 1.4E-13 81.4 -3.6 172 7-185 13-192 (336)
45 KOG4314 Predicted carbohydrate 98.5 1.1E-07 2.3E-12 72.1 3.0 109 76-184 50-160 (290)
46 PTZ00343 triose or hexose phos 98.4 3.7E-05 7.9E-10 64.2 17.0 135 14-150 196-347 (350)
47 TIGR03340 phn_DUF6 phosphonate 98.4 5.3E-06 1.1E-10 67.0 11.1 62 87-148 219-280 (281)
48 PRK15430 putative chlorampheni 98.2 0.00012 2.6E-09 59.6 15.6 66 85-150 219-284 (296)
49 TIGR00776 RhaT RhaT L-rhamnose 98.2 8.9E-05 1.9E-09 60.3 14.5 127 12-150 152-287 (290)
50 PRK02971 4-amino-4-deoxy-L-ara 98.1 2.9E-05 6.2E-10 55.7 8.6 69 84-152 52-123 (129)
51 COG0697 RhaT Permeases of the 98.1 0.00061 1.3E-08 54.3 16.9 76 77-152 212-288 (292)
52 PRK10452 multidrug efflux syst 97.9 8.7E-05 1.9E-09 52.4 8.2 71 82-152 33-104 (120)
53 PRK09541 emrE multidrug efflux 97.8 0.00025 5.4E-09 49.4 8.5 67 85-151 36-103 (110)
54 COG2076 EmrE Membrane transpor 97.8 0.00025 5.3E-09 48.8 8.1 69 83-151 34-103 (106)
55 PRK11431 multidrug efflux syst 97.8 0.00032 6.9E-09 48.4 8.6 68 84-151 34-102 (105)
56 PF08449 UAA: UAA transporter 97.8 0.0015 3.3E-08 53.3 14.1 138 13-151 155-297 (303)
57 PRK10650 multidrug efflux syst 97.7 0.00042 9.1E-09 48.1 8.6 67 84-150 40-107 (109)
58 PF06800 Sugar_transport: Suga 97.7 0.0012 2.5E-08 53.0 12.0 104 77-180 43-159 (269)
59 COG5006 rhtA Threonine/homoser 97.7 0.0023 5E-08 50.5 13.0 128 16-149 152-280 (292)
60 TIGR00803 nst UDP-galactose tr 97.4 0.00039 8.5E-09 54.1 6.4 84 103-186 2-112 (222)
61 PF06027 DUF914: Eukaryotic pr 97.3 0.01 2.2E-07 49.2 13.4 134 12-152 172-306 (334)
62 PF06800 Sugar_transport: Suga 97.3 0.012 2.5E-07 47.4 12.7 125 13-147 139-267 (269)
63 PF04657 DUF606: Protein of un 97.2 0.035 7.6E-07 40.2 13.9 121 24-148 13-138 (138)
64 PF00893 Multi_Drug_Res: Small 97.2 0.0019 4E-08 43.6 6.7 57 86-142 36-93 (93)
65 COG2962 RarD Predicted permeas 97.1 0.057 1.2E-06 43.6 15.3 128 20-151 155-283 (293)
66 KOG1441 Glucose-6-phosphate/ph 97.0 0.0033 7.2E-08 51.6 7.4 140 10-151 161-307 (316)
67 PF05653 Mg_trans_NIPA: Magnes 96.7 0.0047 1E-07 50.5 6.1 66 85-150 55-121 (300)
68 TIGR00803 nst UDP-galactose tr 96.6 0.046 1E-06 42.4 11.2 64 85-148 158-221 (222)
69 PF10639 UPF0546: Uncharacteri 96.5 0.0088 1.9E-07 41.7 5.6 70 79-149 42-112 (113)
70 PRK13499 rhamnose-proton sympo 96.4 0.24 5.2E-06 41.3 14.4 99 78-176 72-191 (345)
71 TIGR00688 rarD rarD protein. T 95.3 0.92 2E-05 35.8 13.2 49 78-126 207-255 (256)
72 KOG2765 Predicted membrane pro 95.0 0.4 8.7E-06 40.2 10.4 125 28-153 263-392 (416)
73 KOG2922 Uncharacterized conser 94.8 0.015 3.2E-07 47.6 1.6 66 85-150 69-135 (335)
74 COG3238 Uncharacterized protei 94.6 1.3 2.7E-05 32.6 13.5 132 16-150 9-145 (150)
75 KOG4510 Permease of the drug/m 94.0 0.07 1.5E-06 42.8 3.8 72 78-149 252-323 (346)
76 KOG1581 UDP-galactose transpor 93.0 1.4 3.1E-05 36.0 9.6 137 11-148 171-310 (327)
77 PF04142 Nuc_sug_transp: Nucle 92.5 4.5 9.7E-05 32.1 12.9 129 11-141 113-243 (244)
78 PRK13499 rhamnose-proton sympo 91.7 7.1 0.00015 32.7 14.6 69 83-152 264-342 (345)
79 KOG1444 Nucleotide-sugar trans 90.8 3.4 7.4E-05 33.9 9.6 137 14-151 159-300 (314)
80 KOG1580 UDP-galactose transpor 90.0 0.51 1.1E-05 37.3 4.1 70 79-148 241-310 (337)
81 PF06379 RhaT: L-rhamnose-prot 89.2 6.7 0.00014 32.7 10.2 162 12-179 7-193 (344)
82 COG4975 GlcU Putative glucose 85.7 0.66 1.4E-05 36.9 2.4 71 78-148 208-282 (288)
83 COG5070 VRG4 Nucleotide-sugar 85.3 17 0.00036 28.8 11.2 119 26-146 169-291 (309)
84 KOG3912 Predicted integral mem 84.8 20 0.00044 29.3 11.6 133 16-150 181-333 (372)
85 COG4975 GlcU Putative glucose 79.5 0.096 2.1E-06 41.5 -4.3 101 79-179 59-172 (288)
86 KOG4831 Unnamed protein [Funct 75.1 4.9 0.00011 27.7 3.5 70 79-149 53-123 (125)
87 PF04342 DUF486: Protein of un 69.2 13 0.00029 25.5 4.5 60 90-149 46-106 (108)
88 PRK02237 hypothetical protein; 68.1 18 0.00039 25.0 5.0 43 109-151 63-105 (109)
89 PF02694 UPF0060: Uncharacteri 66.7 18 0.00038 25.0 4.7 43 110-152 62-104 (107)
90 COG2917 Intracellular septatio 55.4 88 0.0019 23.6 7.9 48 108-155 25-72 (180)
91 COG3169 Uncharacterized protei 53.3 38 0.00081 23.1 4.4 30 120-149 84-113 (116)
92 PRK11056 hypothetical protein; 51.4 81 0.0018 22.2 5.9 28 107-134 87-114 (120)
93 COG2510 Predicted membrane pro 48.9 99 0.0022 22.3 6.4 44 85-128 11-54 (140)
94 TIGR02230 ATPase_gene1 F0F1-AT 44.6 39 0.00084 23.0 3.5 37 114-150 53-89 (100)
95 COG1742 Uncharacterized conser 43.6 34 0.00075 23.5 3.1 40 113-152 66-105 (109)
96 KOG1582 UDP-galactose transpor 43.0 1.9E+02 0.0041 23.8 8.1 50 104-153 285-334 (367)
97 PRK00259 intracellular septati 42.3 1.5E+02 0.0032 22.4 10.7 27 128-154 44-71 (179)
98 KOG1442 GDP-fucose transporter 41.9 87 0.0019 25.7 5.6 132 18-151 190-327 (347)
99 PF08627 CRT-like: CRT-like; 37.4 1.1E+02 0.0023 21.9 4.8 53 7-60 52-104 (130)
100 PF05977 MFS_3: Transmembrane 34.5 3.3E+02 0.0072 24.2 8.9 76 103-178 251-328 (524)
101 PF07226 DUF1422: Protein of u 33.4 1.7E+02 0.0037 20.5 7.2 31 104-134 84-114 (117)
102 KOG1443 Predicted integral mem 30.1 2.6E+02 0.0057 23.3 6.7 55 96-150 260-314 (349)
103 COG3296 Uncharacterized protei 29.9 1.9E+02 0.0041 20.7 5.1 30 134-163 72-101 (143)
104 PF09656 PGPGW: Putative trans 27.9 1.4E+02 0.003 17.8 4.6 45 135-184 5-49 (53)
105 PRK07668 hypothetical protein; 25.1 3.6E+02 0.0079 21.6 10.8 21 86-106 206-226 (254)
106 PF05653 Mg_trans_NIPA: Magnes 24.3 2E+02 0.0043 23.5 5.3 62 90-151 224-292 (300)
107 PF04279 IspA: Intracellular s 24.2 3.1E+02 0.0067 20.5 9.8 66 79-153 4-70 (176)
108 COG4858 Uncharacterized membra 23.3 3.5E+02 0.0076 20.8 8.2 55 128-182 156-217 (226)
109 PF09930 DUF2162: Predicted tr 23.0 3.8E+02 0.0082 21.1 12.7 78 72-149 95-175 (224)
110 PF07123 PsbW: Photosystem II 22.5 91 0.002 22.5 2.5 30 154-183 101-130 (138)
111 COG4657 RnfA Predicted NADH:ub 22.5 3.4E+02 0.0074 20.4 13.2 64 121-184 87-157 (193)
112 KOG1583 UDP-N-acetylglucosamin 22.0 65 0.0014 26.4 1.9 36 115-150 278-313 (330)
113 PF03729 DUF308: Short repeat 21.8 1.9E+02 0.0041 17.2 4.4 16 138-153 3-18 (72)
114 PF11127 DUF2892: Protein of u 21.3 1.6E+02 0.0034 17.8 3.2 20 1-20 1-20 (66)
115 PF04156 IncA: IncA protein; 20.6 2.5E+02 0.0055 20.8 4.9 16 135-150 12-27 (191)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=2.2e-27 Score=197.01 Aligned_cols=174 Identities=23% Similarity=0.418 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCC-hhHHHHHHHHHHH
Q 029720 9 SVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVE-PEDRWRRIFPMSF 87 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 87 (189)
.+++..+.|..|+.+|+..++.||+++++ +|+|++++++|++++.+.+.+.+. .+.++.++.+ ++++++.++|+|+
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999997 889999999999999887766543 2333333343 4567889999999
Q ss_pred HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHH
Q 029720 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFG 167 (189)
Q Consensus 88 ~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s 167 (189)
++.......+.|+++++++++++++++.|+++++++++++|||++++++++++++++|+.+++.+|.++++.|++++++|
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s 202 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLS 202 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHH
Confidence 98777777889999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHhhccC
Q 029720 168 CLATSTKTILAESLLHSY 185 (189)
Q Consensus 168 ~~~~a~~~v~~~~l~~~~ 185 (189)
++++++|+++.|+..+++
T Consensus 203 ~~~~a~~~i~~k~~~~~~ 220 (350)
T PTZ00343 203 NLGSSLRSIFAKKTMKNK 220 (350)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999998764
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=6.9e-27 Score=190.33 Aligned_cols=173 Identities=31% Similarity=0.470 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCI 91 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (189)
++++.+..|+.+|++.++.||+++++ |++|..+++.|+.++.+.+.+.+. .+.+++++.+ +++++.+++.|++++.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKIS-SALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCC-HHHHHHHHHHHHHHHH
Confidence 57889999999999999999999996 889999999999999887766632 2223333443 5678999999999999
Q ss_pred HHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHH
Q 029720 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLAT 171 (189)
Q Consensus 92 ~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 171 (189)
++.++|.|++|+++++++++++++|+++++++++++|||++++++.+++++++|+.+...+|.+++..|+++++.++++|
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887777778888999999999999
Q ss_pred HHHHHHHHHhhccCCCC
Q 029720 172 STKTILAESLLHSYKFD 188 (189)
Q Consensus 172 a~~~v~~~~l~~~~~~~ 188 (189)
++|.++.|+..++.+.|
T Consensus 158 a~~~v~~k~~~~~~~~~ 174 (302)
T TIGR00817 158 VSRNIFSKKAMTIKSLD 174 (302)
T ss_pred HHHHHHHHHhhccCCCC
Confidence 99999999998744444
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=9.8e-28 Score=194.14 Aligned_cols=184 Identities=40% Similarity=0.693 Sum_probs=166.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHH
Q 029720 5 LCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFP 84 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (189)
..++...+...++..|++++++.++.||++++.++||+|++++..|++.+.+...... ..|..|..+.+++.+++.++|
T Consensus 10 ~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~-~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 10 GQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIK-VLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred cccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccchHHHHH
Confidence 3455567788899999999999999999999988899999999999998888776664 446666655556789999999
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHH
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAA 164 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~ 164 (189)
+|++++++.++.|.|+++++++++|++|+++|++++++++++.+|+++++.+++++.++.||.+++.+|.++|+.|+..+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc--cCCCCC
Q 029720 165 LFGCLATSTKTILAESLLH--SYKFDR 189 (189)
Q Consensus 165 l~s~~~~a~~~v~~~~l~~--~~~~~~ 189 (189)
+.+.+..++++++.|++++ ++++|+
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~ 195 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNS 195 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCc
Confidence 9999999999999999994 556653
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-21 Score=156.45 Aligned_cols=174 Identities=23% Similarity=0.393 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFC 90 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (189)
.+..+..+.|+.+|+.+.++||+++++++||...++..+|.+.+.+.+...-+ .|..+.++++ ++..|+++|.++.+.
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~lv~~~~l~-~~~~kk~~P~~~lf~ 88 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LGLVNFRPLD-LRTAKKWFPVSLLFV 88 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hceeecCCcC-hHHHHHHccHHHHHH
Confidence 35678899999999999999999999966665556666999999988877744 4655555665 457888999999999
Q ss_pred HHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHH
Q 029720 91 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLA 170 (189)
Q Consensus 91 ~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 170 (189)
+++..+..+++|+|+|+++++|+.+|+++++.+..++|.++++..|.++....+|.......|..++..|+.|++.+.++
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~ 168 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLT 168 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCC
Q 029720 171 TSTKTILAESLLHSYK 186 (189)
Q Consensus 171 ~a~~~v~~~~l~~~~~ 186 (189)
.+.+.++.|+..+.-+
T Consensus 169 ~a~~~v~~kk~vd~~~ 184 (314)
T KOG1444|consen 169 TAAFVVYVKKSVDSAN 184 (314)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999987544
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.85 E-value=9.5e-21 Score=149.86 Aligned_cols=175 Identities=22% Similarity=0.380 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhc-CC--CccCChhHHHHHHHHHH
Q 029720 10 VFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKL-KP--LITVEPEDRWRRIFPMS 86 (189)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~ 86 (189)
.+.+...+..|+++|++..+.+|..-.+ |++|+.++.+|.++-.+......+..+. .| +...+++++.++..|.+
T Consensus 14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta 91 (349)
T KOG1443|consen 14 RVLTLALVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA 91 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh
Confidence 4556666799999999999999888876 8899999999999988887777655332 22 23457889999999999
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHH
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALF 166 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~ 166 (189)
+..++.+.++|.|++|++++.|++.|+.+++|+.+++..+.=|++++.-.+.+.++-+|+.+.++.+.+++..|+.+.+.
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~ 171 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLA 171 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 029720 167 GCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 167 s~~~~a~~~v~~~~l~~~~~ 186 (189)
+.++.++...+.+.++++++
T Consensus 172 aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 172 ASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred HHHhhhhhHHHHHHHHhcCc
Confidence 99999999999999998765
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.83 E-value=4e-19 Score=144.95 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHh
Q 029720 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLG 96 (189)
Q Consensus 17 ~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (189)
..+|..|..-....+|..-+.++.++|..+++.|++++.+...+.....+ .+ + +++.++++.++.++++.++..++
T Consensus 6 ~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 6 AGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FP--K-SRKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-cc--C-CCcChHHHHHHHHHHHHHHHHHH
Confidence 34455544433444454444444447999999999999988777654433 11 1 24557888999999999999999
Q ss_pred hhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc----cc------hHHHHHHHHH
Q 029720 97 NVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL----SF------NMFGFCAALF 166 (189)
Q Consensus 97 ~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~----~~------~~~G~~~~l~ 166 (189)
|.|++|+|+|+++++|++.|+++++++++++|||++++++++++++++|+.+...+|. +. +..|+++.++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875442 11 1239999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC
Q 029720 167 GCLATSTKTILAESLLHSYKFDR 189 (189)
Q Consensus 167 s~~~~a~~~v~~~~l~~~~~~~~ 189 (189)
+.+++|++.+++|+..++|+.++
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~ 184 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSP 184 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcH
Confidence 99999999999999999988764
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.80 E-value=1.2e-17 Score=138.82 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=139.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhc-CCCccCChhHHHHHHHHH
Q 029720 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKL-KPLITVEPEDRWRRIFPM 85 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 85 (189)
||+..+...+.+.-=.++.++..+.|..++. |.+ |..+.++|+.++.+++.++.+..++ ++.++. .++++..+...
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~-~~~~~~~l~l~ 84 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL-SVSILSKIGLL 84 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-hHHHHHHHHHH
Confidence 5666666666666667788999999999986 788 9999999999999988877654332 111111 23345556666
Q ss_pred HHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHH------hhcccChhHHHHHHHHHHhhhhhcc-ccc----
Q 029720 86 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLV------WRKYFDWRIWASLVPIVGGILLTSV-TEL---- 154 (189)
Q Consensus 86 ~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~------~~e~~s~~~~~~~~l~~~Gv~l~~~-~~~---- 154 (189)
+++......+.+.+++|++++.++++.++.|++++++++++ +|||++++++.++++.++|+.+... ++.
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~ 164 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV 164 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 66655566689999999999999999999999999999999 6999999999999999999987543 110
Q ss_pred -------------------cch-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029720 155 -------------------SFN-MFGFCAALFGCLATSTKTILAESLLHSY 185 (189)
Q Consensus 155 -------------------~~~-~~G~~~~l~s~~~~a~~~v~~~~l~~~~ 185 (189)
+.+ ..|+.+++.++++||+|.+.+|+..+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~ 215 (358)
T PLN00411 165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY 215 (358)
T ss_pred ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112 4599999999999999999999998876
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.75 E-value=2.4e-16 Score=129.24 Aligned_cols=179 Identities=15% Similarity=0.216 Sum_probs=134.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC-CCccCChhHHHHHHHH
Q 029720 6 CTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLK-PLITVEPEDRWRRIFP 84 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~ 84 (189)
.+|+.++..+..=.=..|..+....+..+-++ |++.|...++.-++.-.++.......++.. +..+. .+.++++.+.
T Consensus 7 ~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~-~~~~~w~y~l 84 (334)
T PF06027_consen 7 FTRRFWIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKV-LKRPWWKYFL 84 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhh-cchhHHHHHH
Confidence 44444444433333334445666777777776 788898888777766555444333222111 11111 1345666777
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc---------c
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------S 155 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~---------~ 155 (189)
++++...++.+.+.|++|++++..|++.++..+++++++++++|+|+++.+++|++++++|+.+....|. +
T Consensus 85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~ 164 (334)
T PF06027_consen 85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGS 164 (334)
T ss_pred HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998765541 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 156 FNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 156 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
....|+++++.++++||+++++.|+..++++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~ 195 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAP 195 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3478999999999999999999999998764
No 9
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.74 E-value=3.7e-16 Score=124.43 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC----C-ccCChhHHHHHHHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKP----L-ITVEPEDRWRRIFPM 85 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~~l~~ 85 (189)
........+|+...... |. .++ .+ |.++.++|++++.+.+.+.....+.+. + +..++++.+......
T Consensus 5 ~~~i~a~~~wg~~~~~~----k~-~~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 5 IVSLLASFLFGYMYYYS----KL-LKP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred HHHHHHHHHHHHHHHHH----HH-hcc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 34555666777666544 87 443 67 999999999999887665543322110 0 011112223334556
Q ss_pred HHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHH
Q 029720 86 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 165 (189)
Q Consensus 86 ~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l 165 (189)
+++...+..+++.|+++++++.++++.++.|+++++++++++|||++++++.++++.++|+.+....+.+.+ .+++
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l 152 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEAL 152 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHH
Confidence 667788999999999999999999999999999999999999999999999999999999987654322222 3578
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 029720 166 FGCLATSTKTILAESLLH 183 (189)
Q Consensus 166 ~s~~~~a~~~v~~~~l~~ 183 (189)
.++++|+.|.+..|+..+
T Consensus 153 ~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 899999999999999764
No 10
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.6e-19 Score=137.00 Aligned_cols=172 Identities=19% Similarity=0.334 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHHHHHHHHHHHhcC------CCccCChhHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQK--LDFKFPLSVSCIHFICSSIGAYLVIKVLKLK------PLITVEPEDRWRRIF 83 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~--~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~l 83 (189)
+...+...+..+|+++.+.||++++. .+.+-|..++++|++++..++..+.+...+. |+.+++ -+..++.+
T Consensus 28 ~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ld-l~t~r~vl 106 (347)
T KOG1442|consen 28 QVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLD-LATARQVL 106 (347)
T ss_pred chhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCccccc-HHHHHhhc
Confidence 44556778889999999999999996 3467899999999999999998876553322 233332 35688899
Q ss_pred HHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc---ccchHHH
Q 029720 84 PMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFG 160 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G 160 (189)
|+++.+.+.+.++|.+++|+++++|++-|+.+.+|+++++++++|++-+.....++.+++.|-.+.+.+| ...++.|
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G 186 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG 186 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776 5678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 029720 161 FCAALFGCLATSTKTILAESLLHS 184 (189)
Q Consensus 161 ~~~~l~s~~~~a~~~v~~~~l~~~ 184 (189)
.++++.+.++.|+..+++|+.+.+
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~~ 210 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLPP 210 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheeccc
Confidence 999999999999999999987754
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.73 E-value=1.4e-15 Score=123.48 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHH-H
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-C 90 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 90 (189)
..+....+|+.... ..|...++ .+ |..++++|+.++.+.+.+.....+ ++ .+++++++.....+.+. .
T Consensus 12 ~~~~~~~iWg~~~~----~~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~-~~---~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 12 ALFALYIIWGSTYL----VIRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRG-HP---LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHhhHHH----HHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhC-CC---CCcHHHHHHHHHHHHHHHH
Confidence 34445556666555 44988885 77 999999999999988877654422 11 12344566666677654 4
Q ss_pred HHHHHhhhhh-ccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc-cccchHHHHHHHHHHH
Q 029720 91 INIVLGNVSL-RYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT-ELSFNMFGFCAALFGC 168 (189)
Q Consensus 91 ~~~~~~~~sl-~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~ 168 (189)
....+.+.+. ++++++..+++.++.|+++++++.+ +|||++++++.++++.++|+.+...+ +.+.+..|+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~ 159 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIAS 159 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHH
Confidence 5667777888 9999999999999999999999986 69999999999999999999887543 3455678999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 029720 169 LATSTKTILAESLLHS 184 (189)
Q Consensus 169 ~~~a~~~v~~~~l~~~ 184 (189)
++||.|.+..|+..++
T Consensus 160 ~~~a~~~~~~~~~~~~ 175 (292)
T PRK11272 160 ASWAFGSVWSSRLPLP 175 (292)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999997654
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.72 E-value=5.3e-16 Score=126.10 Aligned_cols=164 Identities=13% Similarity=0.174 Sum_probs=123.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHH
Q 029720 8 WSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (189)
++......++.+|+...... |..+++ +| |..+.++|+.++.+++.++. + +|+ . ++++++..+..++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~----k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~---~-~~~--~-~~~~~~~~~~~~l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLI----RGVSES--LG-PVGGAAMIYSVSGLLLLLTV---G-FPR--L-RQFPKRYLLAGGL 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHH----HHHHcc--CC-hHHHHHHHHHHHHHHHHHHc---c-ccc--c-ccccHHHHHHHhH
Confidence 34456667788888766544 998886 88 99999999999988876542 1 122 1 1222333333344
Q ss_pred HHHHHHHHhhhhhc----cccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc---------
Q 029720 88 VFCINIVLGNVSLR----YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------- 154 (189)
Q Consensus 88 ~~~~~~~~~~~sl~----~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~--------- 154 (189)
.+.....+.+.+++ +.+.....++.++.|+++++++++++|||++++++.++++.++|+.+...++.
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 149 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELIN 149 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhh
Confidence 45566666666664 46777788999999999999999999999999999999999999988754332
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029720 155 --SFNMFGFCAALFGCLATSTKTILAESLLHSY 185 (189)
Q Consensus 155 --~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~ 185 (189)
+.+..|+.+++.++++||.|.++.||..+++
T Consensus 150 ~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~ 182 (295)
T PRK11689 150 NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK 182 (295)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 1235699999999999999999999987654
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.72 E-value=5.2e-16 Score=123.40 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=121.3
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHH-HHHHHHHHhhhhhccccHhH
Q 029720 29 ITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF-VFCINIVLGNVSLRYIPVSF 107 (189)
Q Consensus 29 ~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~sl~~~~v~~ 107 (189)
...|+.+++ ..| |..+.+.|+..+.+.+.+..+. + .+++ +++..+..+. ...++..+.+.|++|++++.
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~-~------~~~~-~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRR-R------PPLK-RLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHh-c------cCHh-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 456998886 345 9999999999888877665432 2 1223 4444555554 56788899999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 108 MQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT-ELSFNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 108 ~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
.+++.++.|+++++++.+++|||++++++.++.+.++|+.+...+ +.+.+..|+.+++.++++|+.+.++.|+..++++
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~ 155 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG 155 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 999999999999999999999999999999999999998887543 3455678999999999999999999999987654
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.72 E-value=1.3e-15 Score=123.94 Aligned_cols=163 Identities=14% Similarity=0.243 Sum_probs=125.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHH
Q 029720 6 CTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPM 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (189)
.+++.........+|+...... |..+++ ++ |..+.++|+.++.+.+.+.. + +++ . +++..+..
T Consensus 2 ~~~~~l~~l~~~~~Wg~~~~~~----k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~---~-~~~--~----~~~~~~~~ 64 (299)
T PRK11453 2 SRKDGVLALLVVVVWGLNFVVI----KVGLHN--MP-PLMLAGLRFMLVAFPAIFFV---A-RPK--V----PLNLLLGY 64 (299)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH----HHHHhc--CC-HHHHHHHHHHHHHHHHHHHh---c-CCC--C----chHHHHHH
Confidence 3455667777888888877755 988875 77 99999999998776654432 1 121 1 12233344
Q ss_pred HHHH-HHHHHHhhhhhcc-ccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc---ccchHHH
Q 029720 86 SFVF-CINIVLGNVSLRY-IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFG 160 (189)
Q Consensus 86 ~~~~-~~~~~~~~~sl~~-~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~---~~~~~~G 160 (189)
++.. .....+...+++| .+.+...++.++.|+++.+++++++|||++++++.++++.++|+.+...++ .+.+..|
T Consensus 65 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G 144 (299)
T PRK11453 65 GLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHH
Confidence 5433 3455566778887 688999999999999999999999999999999999999999998876432 2345679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q 029720 161 FCAALFGCLATSTKTILAESLLHSY 185 (189)
Q Consensus 161 ~~~~l~s~~~~a~~~v~~~~l~~~~ 185 (189)
+.+++.++++|+.|.++.|+..+++
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~ 169 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHS 169 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999987554
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.69 E-value=4e-15 Score=120.99 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--ccCChhHHHHHHHHHHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL--ITVEPEDRWRRIFPMSFV 88 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 88 (189)
....+...+|+...+. .|.. + +.+ |..+.++|+.++.+.+.+.....+..+. ++.++++++......+..
T Consensus 11 ~~~l~a~~~wg~~~~~----~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 11 LLALAAYFIWGIAPAY----FKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred HHHHHHHHHHHHHHHH----HHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3444455566655443 3875 3 377 9999999999998877665443221110 001112222223333455
Q ss_pred HHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHH
Q 029720 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGC 168 (189)
Q Consensus 89 ~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~ 168 (189)
.+.+..+++.+++++|++..+++.++.|+++++++++++|||++++++.++++.++|+.+....+.+.+ .+++.++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa 158 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLA 158 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999998753322221 4688899
Q ss_pred HHHHHHHHHHHHhhc
Q 029720 169 LATSTKTILAESLLH 183 (189)
Q Consensus 169 ~~~a~~~v~~~~l~~ 183 (189)
++||.|.++.|+..+
T Consensus 159 ~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 159 FSFAFYGLVRKKIAV 173 (296)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998754
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.61 E-value=1.4e-13 Score=111.83 Aligned_cols=171 Identities=11% Similarity=0.015 Sum_probs=122.8
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHH
Q 029720 2 EASLCTWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRR 81 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
..|+..-|..+.....+.-..+........|+.+++ ++ |..+.++|+.++.+++.+..+..+ + ..+ +++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~--~--~~~-~~~~~~ 73 (293)
T PRK10532 2 PGSLRKLPVWLPILLLLIAMASIQSGASLAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWR--L--RFA-KEQRLP 73 (293)
T ss_pred CCcccccccchHHHHHHHHHHHHHhhHHHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHh--c--cCC-HHHHHH
Confidence 334443344444444444333333444467999986 78 999999999999988876643211 1 222 345666
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc---cccchH
Q 029720 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT---ELSFNM 158 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~---~~~~~~ 158 (189)
.+..++.......+.+.+++|+|++..+++..+.|+++++++. |+++.. ..+.+.++|+.+.... ..+.+.
T Consensus 74 ~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~ 147 (293)
T PRK10532 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDL 147 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHH--HHHHHHHHHHheeeecCCCcccCCh
Confidence 7778887777888899999999999999999999999998873 565544 4456778998876421 233467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 159 FGFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 159 ~G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
.|+.+++.++++|+.|.+..|+..++++
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~ 175 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHG 175 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 8999999999999999999999977653
No 17
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.57 E-value=2.1e-14 Score=109.70 Aligned_cols=163 Identities=17% Similarity=0.314 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHH
Q 029720 15 LAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIV 94 (189)
Q Consensus 15 ~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 94 (189)
...+.|.+.|+.+.+.||++++..||+-...+.+.|..++.+.+.++- ..|..+. +..+.|++.|.+++....+.
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk-~l~~~~f----R~t~aK~WfpiSfLLv~MIy 83 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILK-FLRLVEF----RLTKAKKWFPISFLLVVMIY 83 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHH-HHhHhhe----ehhhhhhhcCHHHHHHHHHH
Confidence 456789999999999999999999998888999999999988776663 3343222 13367788899999999999
Q ss_pred HhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccccc--------chHHHHHHHHH
Q 029720 95 LGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELS--------FNMFGFCAALF 166 (189)
Q Consensus 95 ~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~ 166 (189)
....|++|.++|.+++++.++.+.++..+..++|.+.+--+..+-++.+.....+.++|.+ .+ .|++|+..
T Consensus 84 t~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~ 162 (309)
T COG5070 84 TSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFT 162 (309)
T ss_pred hcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEeh
Confidence 9999999999999999999999999999999999999999999999999999999888863 33 69999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029720 167 GCLATSTKTILAESLLH 183 (189)
Q Consensus 167 s~~~~a~~~v~~~~l~~ 183 (189)
+.+..+.|....|+..+
T Consensus 163 NclssaafVL~mrkri~ 179 (309)
T COG5070 163 NCLSSAAFVLIMRKRIK 179 (309)
T ss_pred hhHhHHHHHHHHHHhhc
Confidence 99999999999988764
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.54 E-value=7.3e-13 Score=106.94 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 029720 24 NVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYI 103 (189)
Q Consensus 24 s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~ 103 (189)
.......+|...++ +++. .+++...+.+.+.+.......++..+.++++.+...+..+........+.+.++++.
T Consensus 13 ~a~~~~~~k~~~~~---~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (281)
T TIGR03340 13 HAGWNLMAKSHADK---EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHA 87 (281)
T ss_pred HHHHHHHHhhcCCc---hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444556866654 2243 466666666666555443211121122234344444445556678888999999999
Q ss_pred cHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029720 104 PVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-LSFNMFGFCAALFGCLATSTKTILAESLL 182 (189)
Q Consensus 104 ~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~l~ 182 (189)
+++..+.+.++.|+++++++++++||+++++++.++.++++|+.+...++ .+.+..|+.+++.++++|+.|.+..|+..
T Consensus 88 ~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 88 DVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred ChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999998875433 33456799999999999999999988764
Q ss_pred c
Q 029720 183 H 183 (189)
Q Consensus 183 ~ 183 (189)
+
T Consensus 168 ~ 168 (281)
T TIGR03340 168 L 168 (281)
T ss_pred c
Confidence 4
No 19
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.7e-13 Score=106.37 Aligned_cols=179 Identities=15% Similarity=0.162 Sum_probs=149.2
Q ss_pred ccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHH
Q 029720 4 SLCTWSVFRSLLAILQWWVF-NVTVIITNKWIFQKLDFK-FPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRR 81 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-s~~~~~~nK~~~~~~~f~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
+++|+++|..++.|..-.++ ......+..++++..||+ |.+.+|+.|+.+=..+..+-.. ..++++ +..+||.
T Consensus 34 ~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~--~~~~k~---r~iP~rt 108 (367)
T KOG1582|consen 34 NLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ--LIQTKR---RVIPWRT 108 (367)
T ss_pred ccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE--eecccc---eecchhH
Confidence 57889999888887776654 456668889999988997 8899999999875544333221 222222 2346777
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc----ccch
Q 029720 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE----LSFN 157 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~----~~~~ 157 (189)
...++.+..+...+.|.|+.|+|.|...++|++..+.+++.+.++.++|.++..+.+..+..+|.++.+..| .++|
T Consensus 109 Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~ 188 (367)
T KOG1582|consen 109 YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFN 188 (367)
T ss_pred hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcc
Confidence 778899999999999999999999999999999999999999999999999999999999999999988766 5788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 029720 158 MFGFCAALFGCLATSTKTILAESLLHSYKF 187 (189)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~ 187 (189)
..|+.+.-.+.+++|+-...+|+..++++-
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ 218 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPA 218 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 999999999999999999999999987653
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.6e-12 Score=100.83 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=127.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHH
Q 029720 39 DFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPAT 118 (189)
Q Consensus 39 ~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~ 118 (189)
+|++|.++.++|-+++.++-.....+++ ++ .+.++++++.-.+++....+..++..|++|+|.|+..+.|++.-+.
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k---~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP 122 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWK---KE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP 122 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccc---cc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH
Confidence 5888999999999999998866655432 22 2345577778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 029720 119 TVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---------LSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDR 189 (189)
Q Consensus 119 ~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~---------~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~ 189 (189)
+++++.+++|+|++..+++...++.+|+.+....+ .+.++.|+.++..+.+++++-+..++++.+++++++
T Consensus 123 Vmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~ 202 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSS 202 (327)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccH
Confidence 99999999999999999999999999999865432 135689999999999999999999999999988764
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.45 E-value=1.1e-12 Score=92.47 Aligned_cols=119 Identities=22% Similarity=0.480 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHH-HHHHHHHhhhhhccccH
Q 029720 27 VIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFV-FCINIVLGNVSLRYIPV 105 (189)
Q Consensus 27 ~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~sl~~~~v 105 (189)
....+|...++ ++ |...+++|+.++.+ +.+.....+..+....+ ++++...+..+.+ ...+..+.+.++++.++
T Consensus 6 ~~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 80 (126)
T PF00892_consen 6 YSVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLS-PRQWLWLLFLGLLGTALAYLLYFYALKYISA 80 (126)
T ss_pred HHHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCC-hhhhhhhhHhhccceehHHHHHHHHHHhcch
Confidence 44567988886 77 99999999999997 54444443322222333 3455556667766 58899999999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 106 SFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 106 ~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
+..+.+..+.|+++++++++++||+++++++.++++++.|+.+..
T Consensus 81 ~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 81 SIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.45 E-value=4.1e-11 Score=95.89 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=110.6
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhccccHhHH
Q 029720 29 ITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFM 108 (189)
Q Consensus 29 ~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~ 108 (189)
...|...++ ...+....+.|.....+...+... .+...... ..++.++..+..++.......+.+.++++++++..
T Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (292)
T COG0697 24 IALKLAVES--LDPFLFAAALRFLIAALLLLPLLL-LEPRGLRP-ALRPWLLLLLLALLGLALPFLLLFLALKYTSASVA 99 (292)
T ss_pred HHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHH-hhcccccc-cccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 344666654 232556666699888877333322 11110111 11212233444445667888999999999999999
Q ss_pred HHHhhhhHHHHHHHHH-HHhhcccChhHHHHHHHHHHhhhhhccccccc---hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029720 109 QTIKSFTPATTVVLQW-LVWRKYFDWRIWASLVPIVGGILLTSVTELSF---NMFGFCAALFGCLATSTKTILAESLL 182 (189)
Q Consensus 109 ~il~~~~pi~~~il~~-~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~---~~~G~~~~l~s~~~~a~~~v~~~~l~ 182 (189)
+.+.++.|+++.+++. +++|||++++++.++.+...|+.++...+... +..|+.+++.++++++++.+..|+..
T Consensus 100 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 100 SLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999997 67799999999999999999999987655433 36899999999999999999999887
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.41 E-value=5e-12 Score=100.10 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc---
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--- 154 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~--- 154 (189)
+..++..-+++|..+..+.+.++++.+++.+|+++++..+++++++++++|+|.+++||.++.+.+.|+.+...++.
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 44556667788999999999999999999999999999999999999999999999999999999999998653221
Q ss_pred ------c--------chHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 155 ------S--------FNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 155 ------~--------~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
+ ....|++..+.+.++.++..++.|+++|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 96 DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1257999999999999999999999999865
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.39 E-value=8.1e-12 Score=101.94 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc--------cch
Q 029720 86 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------SFN 157 (189)
Q Consensus 86 ~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~--------~~~ 157 (189)
..+.......+|.|+.+++++..+++.+++-.|+..++.++..||+++.|.+++.+.++|+++++.+|. +-+
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ 245 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP 245 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence 334467888899999999999999999999999999999999999999999999999999999887642 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029720 158 MFGFCAALFGCLATSTKTILAESLLHSY 185 (189)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~v~~~~l~~~~ 185 (189)
..|.++++++++.||+|.++.||..+++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~e 273 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDE 273 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 6899999999999999999999998765
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2e-12 Score=99.71 Aligned_cols=171 Identities=17% Similarity=0.247 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhhc---CCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIIT--NKWIFQK---LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMS 86 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~--nK~~~~~---~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (189)
.+....++|...++..-=. .||-.+. ..|.+...+.+.|+..+.+..-++..+ +++.+.+ +.+-+.....+
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~i---r~~~~~D-~t~~~~YaAcs 92 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLI---RKKTEID-NTPTKMYAACS 92 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheee---ccccccc-CCcchHHHHHH
Confidence 4445556666656543211 1222111 248889999999999999887665433 3333343 44566677889
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc-------ccchHH
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-------LSFNMF 159 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~-------~~~~~~ 159 (189)
+.+.+.....|.+++|+|.|+..+-+++.||.+++++.++.+++.+|+++++++++++||++.-+.+ .+..-.
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~ 172 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF 172 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999987653 122247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 160 GFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 160 G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
|-++.++|...+++....+++..+.|+
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira~yq 199 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRASYQ 199 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhc
Confidence 899999999999999999999987765
No 26
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.27 E-value=2.6e-10 Score=90.13 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcc-------CChhH----HHHHHH
Q 029720 20 WWVFNVTVIITNKWIFQK-----LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLIT-------VEPED----RWRRIF 83 (189)
Q Consensus 20 ~~~~s~~~~~~nK~~~~~-----~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~-------~~~~~----~~~~~l 83 (189)
-..+++...++.||.-+. .+|+.|+..+..-++--.++++.+...+++...+. ..+.+ ..+..+
T Consensus 11 mvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl 90 (372)
T KOG3912|consen 11 MVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFL 90 (372)
T ss_pred hhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceec
Confidence 344566777888987653 45888988887777655566655533322111110 01111 244466
Q ss_pred HHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc---------
Q 029720 84 PMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------- 154 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~--------- 154 (189)
|-+++-..+..+.+.++.+++++.+|++|-...+|+.+++.-+++++++.++|+++..+..|+..+...|.
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d 170 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTD 170 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccc
Confidence 77788888888889999999999999999999999999999999999999999999999999998765431
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 029720 155 -SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDR 189 (189)
Q Consensus 155 -~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~~~~ 189 (189)
+.-..|+.+.+++-+.-|.+.++.+|.+++++.+|
T Consensus 171 ~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~p 206 (372)
T KOG3912|consen 171 YSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAP 206 (372)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCH
Confidence 22257999999999999999999999999988776
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.25 E-value=7.4e-11 Score=82.72 Aligned_cols=106 Identities=18% Similarity=0.381 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--ccCChhHHHHHHHHHHHHHH-HHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHH
Q 029720 48 CIHFICSSIGAYLVIKVLKLKPL--ITVEPEDRWRRIFPMSFVFC-INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQW 124 (189)
Q Consensus 48 ~~r~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~ 124 (189)
.+|..++.+.+.......+..+. +.. +++++......+.... .+..++..|+++.+ +....+.++.|++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRAL-RRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 46788888877766554332111 111 1234454555566554 88999999999999 5888999999999999999
Q ss_pred HHhhcccChhHHHHHHHHHHhhhhhcccccc
Q 029720 125 LVWRKYFDWRIWASLVPIVGGILLTSVTELS 155 (189)
Q Consensus 125 ~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~ 155 (189)
+++|||++++++.++.++++|+.+...+|.+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999877654
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.21 E-value=1.7e-09 Score=87.88 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCI 91 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (189)
.....+++|+...+-. |.+. +++ |..+. |..++.+++.......+ .|+. +.+..+..-+..++..+.
T Consensus 5 ~~lia~~~wGs~g~~~----k~~~---g~~-~~~~~--~~~~g~l~~~~~~~~~~-~~~~--~~~~~~~~g~l~G~~w~i 71 (290)
T TIGR00776 5 IALIPALFWGSFVLIN----VKIG---GGP-YSQTL--GTTFGALILSIAIAIFV-LPEF--WALSIFLVGLLSGAFWAL 71 (290)
T ss_pred HHHHHHHHHhhhHHHH----hccC---CCH-HHHHH--HHHHHHHHHHHHHHHHh-CCcc--cccHHHHHHHHHHHHHHh
Confidence 4556777888777655 6554 356 33333 67777776655544333 2221 112233333344555778
Q ss_pred HHHHhhhhhccccHhHHHHHhh-hhHHHHHHHHHHHhhcccChhH----HHHHHHHHHhhhhhcccccc-------ch-H
Q 029720 92 NIVLGNVSLRYIPVSFMQTIKS-FTPATTVVLQWLVWRKYFDWRI----WASLVPIVGGILLTSVTELS-------FN-M 158 (189)
Q Consensus 92 ~~~~~~~sl~~~~v~~~~il~~-~~pi~~~il~~~~~~e~~s~~~----~~~~~l~~~Gv~l~~~~~~~-------~~-~ 158 (189)
.+.++..|.++++++.+..+.+ ..|++..+.+.+++||+.++++ ..+++++++|+.+....+.+ .+ .
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~ 151 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFK 151 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchh
Confidence 8899999999999999999988 8888999999999999999999 99999999999987543211 33 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029720 159 FGFCAALFGCLATSTKTILAESL 181 (189)
Q Consensus 159 ~G~~~~l~s~~~~a~~~v~~~~l 181 (189)
.|++++++++++|+.|.+..|+.
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999976
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.20 E-value=2.8e-10 Score=79.92 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCChhHHHHHHHHHHHHHHHHHH
Q 029720 16 AILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI-TVEPEDRWRRIFPMSFVFCINIV 94 (189)
Q Consensus 16 ~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 94 (189)
+.++-..+.....+..|..++. .+ |.+-++.|..+....+..+....|..... +.+ ++.+.-+..-|+.-+.+..
T Consensus 7 ~ALLsA~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~-~k~~lflilSGla~glswl 82 (140)
T COG2510 7 YALLSALFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG-PKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccC-cceehhhhHHHHHHHHHHH
Confidence 3334444455566788999986 56 99999999999988888776655432221 123 3345555556677789999
Q ss_pred HhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 95 LGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 95 ~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
+++.+++.-++|-..=+..++|+++++++++++|||++.++|+++.++++|+.+.+
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999998765
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1e-08 Score=83.63 Aligned_cols=164 Identities=15% Similarity=0.246 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHHHHHHHHh----cCCCccCC-----hhHHHHHHHHHHHHHH
Q 029720 22 VFNVTVIITNKWIFQKL--DFKFPLSVSCIHFICSSIGAYLVIKVLK----LKPLITVE-----PEDRWRRIFPMSFVFC 90 (189)
Q Consensus 22 ~~s~~~~~~nK~~~~~~--~f~~p~~l~~~r~~~~~~~l~~~~~~~~----~~~~~~~~-----~~~~~~~~l~~~~~~~ 90 (189)
+.+.+..+..||.-... .|. |.+..++--.+-.+++........ .++.+.++ .+.+..+...-++.|+
T Consensus 25 ~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYa 103 (345)
T KOG2234|consen 25 AQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYA 103 (345)
T ss_pred HHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHH
Confidence 34556667778777654 354 777777766666666665544431 11112221 1213444555677888
Q ss_pred HHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc---cc--------ccchHH
Q 029720 91 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV---TE--------LSFNMF 159 (189)
Q Consensus 91 ~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~---~~--------~~~~~~ 159 (189)
.++.+...++.+.+++++++..++....|+++..++++||.+++||.++++.++|+.+... ++ .+..+.
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~ 183 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFL 183 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhh
Confidence 8888999999999999999999999999999999999999999999999999999999762 11 123478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 160 GFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 160 G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
|....+.+.++.++-.++.|+++|+-+
T Consensus 184 G~~avl~~c~~SgfAgvYfEkiLK~s~ 210 (345)
T KOG2234|consen 184 GLVAVLVACFLSGFAGVYFEKILKGSN 210 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998754
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.04 E-value=2.2e-08 Score=79.43 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHH-HHH
Q 029720 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFV-FCI 91 (189)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 91 (189)
.....+.-..+.....+..|...++.+-+ +.....+|+.++.+.+.+.....+ .+ ...+ ...+...+..+.+ ...
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLG-PN-PQAL-SLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcC-CC-CCcc-hHHHHHHHHHHHHHHHH
Confidence 33333333444444555678887653322 455666788888888777654322 12 1222 3344445556665 468
Q ss_pred HHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhh
Q 029720 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGIL 147 (189)
Q Consensus 92 ~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~ 147 (189)
+..+++.++++.+++..+++..+.|+++++++++++||+++.+++.|..+++.|+.
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999863
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.96 E-value=8.7e-10 Score=86.95 Aligned_cols=150 Identities=19% Similarity=0.321 Sum_probs=116.1
Q ss_pred HHHhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhcc-ccHhHHH
Q 029720 32 KWIFQKLDFK-FPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRY-IPVSFMQ 109 (189)
Q Consensus 32 K~~~~~~~f~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~-~~v~~~~ 109 (189)
..+.++ .| +-..+|+.|+++.+.-.++.- .+ ....+++.+.|........+.....++|.++++ ++.|.+.
T Consensus 23 E~L~~~--~pgsgNLITFaqFlFia~eGlif~--sk---f~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHi 95 (330)
T KOG1583|consen 23 ELLVRN--EPGSGNLITFAQFLFIATEGLIFT--SK---FFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHI 95 (330)
T ss_pred HHHHHh--CCCCeeehHHHHHHHHHHhceeee--cc---ccccCCCCchhhhheehheeeeeeeeccceeeecccceEEE
Confidence 455554 22 356899999987666544431 12 222233445666666777788888999999998 5999999
Q ss_pred HHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc---cccc--------------ch--HHHHHHHHHHHHH
Q 029720 110 TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV---TELS--------------FN--MFGFCAALFGCLA 170 (189)
Q Consensus 110 il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~---~~~~--------------~~--~~G~~~~l~s~~~ 170 (189)
++|+.+++.++++++++.|+|++.+|+.+++++.+|+++.+. .|.+ +. ..|+.+..++.+.
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~ 175 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLL 175 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998653 2211 11 3699999999999
Q ss_pred HHHHHHHHHHhhccCCCC
Q 029720 171 TSTKTILAESLLHSYKFD 188 (189)
Q Consensus 171 ~a~~~v~~~~l~~~~~~~ 188 (189)
.|...+++|...|||.-+
T Consensus 176 sa~mgiyqE~~Y~kyGKh 193 (330)
T KOG1583|consen 176 SAYMGIYQETTYQKYGKH 193 (330)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999988654
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.92 E-value=2.3e-07 Score=74.01 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-CChhHHHHHHHHHHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL-IT-VEPEDRWRRIFPMSFV 88 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~ 88 (189)
.-.+.+-..|+.... ..|.+-. .| +.++...|.+.+...........|..+. .+ .++++.+......++.
T Consensus 10 l~~l~Ay~lwG~lp~----y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 10 LLALLAYLLWGLLPL----YFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred HHHHHHHHHHHHHHH----HHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 344445555555443 4477665 47 9999999999998888777655442211 11 1111233334445556
Q ss_pred HHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHH
Q 029720 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGC 168 (189)
Q Consensus 89 ~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~ 168 (189)
.+.+...+..|...-.+--.++-....|++.++++.+++|||+++-|++++.++.+||..-.....++++....+ +
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a 157 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----A 157 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----H
Confidence 688899999999998888888999999999999999999999999999999999999999887777788765444 5
Q ss_pred HHHHHHHHHHHHh
Q 029720 169 LATSTKTILAESL 181 (189)
Q Consensus 169 ~~~a~~~v~~~~l 181 (189)
++|++|...-|++
T Consensus 158 ~sf~~Ygl~RK~~ 170 (293)
T COG2962 158 LSFGLYGLLRKKL 170 (293)
T ss_pred HHHHHHHHHHHhc
Confidence 6889998877665
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.88 E-value=2.2e-07 Score=72.72 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhccccHhHHH
Q 029720 30 TNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQ 109 (189)
Q Consensus 30 ~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~ 109 (189)
..|.++.. +. |.-.+++|..++.+++..+.|-++.+ . .++++...+..|...+..+.+.+.|++.+|.+...
T Consensus 30 ~Ak~LFP~--vG-~~g~t~lRl~~aaLIll~l~RPwr~r----~-~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAV 101 (292)
T COG5006 30 FAKSLFPL--VG-AAGVTALRLAIAALILLALFRPWRRR----L-SKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAV 101 (292)
T ss_pred HHHHHccc--cC-hhhHHHHHHHHHHHHHHHHhhHHHhc----c-ChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 45777775 56 99999999999999998887765532 2 24467778889999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc---cccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029720 110 TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT---ELSFNMFGFCAALFGCLATSTKTILAESLL 182 (189)
Q Consensus 110 il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~---~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~ 182 (189)
.+-.+.|+.++.++- +|. +..+-+.+.+.|..+.... ..+.|+.|..+++.+..||+.|.+..||.-
T Consensus 102 AiEF~GPL~vA~~~s----Rr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g 171 (292)
T COG5006 102 AIEFTGPLAVALLSS----RRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAG 171 (292)
T ss_pred hhhhccHHHHHHHhc----cch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhc
Confidence 999999998877653 333 3444556677787775432 256789999999999999999999999887
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.84 E-value=3.8e-07 Score=76.22 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=87.3
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCChhHHHHHHHHHHHHHHHHHHHhhhhhccccHh
Q 029720 29 ITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLI--TVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVS 106 (189)
Q Consensus 29 ~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~ 106 (189)
+..|...++ +|.+...+++++.++.+.+.+........+.. ..........++..+++..+.+.+++.++++.++.
T Consensus 206 il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~ 283 (358)
T PLN00411 206 ILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPL 283 (358)
T ss_pred HHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 445666654 66456778888887777665544332211110 01111112224444444456788899999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 107 FMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 107 ~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
...+...+.|++++++++++++|++++.+++|.+++++|+.++..+
T Consensus 284 ~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 284 YLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999997643
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.77 E-value=6e-07 Score=72.87 Aligned_cols=121 Identities=11% Similarity=0.072 Sum_probs=89.9
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHH-HHHHHHHhhhhhccccHh
Q 029720 28 IITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFV-FCINIVLGNVSLRYIPVS 106 (189)
Q Consensus 28 ~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~sl~~~~v~ 106 (189)
.+.+|..-+ ++|...+.+|+.++...+.+.....+ .+....++.+.+..++..+++ ......+++.++++.+++
T Consensus 166 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~ 240 (292)
T PRK11272 166 SVWSSRLPL----PVGMMAGAAEMLAAGVVLLIASLLSG-ERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPA 240 (292)
T ss_pred HHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHcC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 344565432 23566778899888887766543322 111111223345556666665 467888999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc
Q 029720 107 FMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (189)
Q Consensus 107 ~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 153 (189)
..+++..+.|++.++++++++||+++..++.|..+++.|+.+....+
T Consensus 241 ~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 241 LATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543
No 37
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.74 E-value=2.2e-09 Score=84.44 Aligned_cols=169 Identities=16% Similarity=0.270 Sum_probs=118.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHH
Q 029720 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMS 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (189)
|+.+....+..+. ++++.++.+..|... ++ |..+.-.|+++-.++..++... .+.+.. .++..-+.++.-+
T Consensus 34 d~p~~gl~l~~vs-~ff~~~~vv~t~~~e----~~-p~e~a~~r~l~~mlit~pcliy-~~~~v~--gp~g~R~~LiLRg 104 (346)
T KOG4510|consen 34 DKPNLGLLLLTVS-YFFNSCMVVSTKVLE----ND-PMELASFRLLVRMLITYPCLIY-YMQPVI--GPEGKRKWLILRG 104 (346)
T ss_pred CCCccCceehhhH-HHHhhHHHhhhhhhc----cC-hhHhhhhhhhhehhhhheEEEE-Eeeeee--cCCCcEEEEEeeh
Confidence 3444455555556 555666666666544 34 9999999977777766665432 112210 1111122233345
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc-----ccc-------
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV-----TEL------- 154 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~-----~~~------- 154 (189)
.....+..+..+|++|.+.+-+.++...+|.|+.++++.++||++|....++..+.+.||++.+. +|.
T Consensus 105 ~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s 184 (346)
T KOG4510|consen 105 FMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSS 184 (346)
T ss_pred hhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccc
Confidence 55566777888999999999999999999999999999999999999999999999999998653 221
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029720 155 --SFNMFGFCAALFGCLATSTKTILAESLLHS 184 (189)
Q Consensus 155 --~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~ 184 (189)
+.+..|.+.++.++++-|---++.|++-|+
T Consensus 185 ~~~~~~~gt~aai~s~lf~asvyIilR~iGk~ 216 (346)
T KOG4510|consen 185 QVEYDIPGTVAAISSVLFGASVYIILRYIGKN 216 (346)
T ss_pred cccccCCchHHHHHhHhhhhhHHHHHHHhhcc
Confidence 234568888888888877777777777554
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.74 E-value=1.4e-06 Score=63.74 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHhhc-----CCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC-cc---C-----C-hhHHHHHHHH
Q 029720 20 WWVFNVTVIITNKWIFQK-----LDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL-IT---V-----E-PEDRWRRIFP 84 (189)
Q Consensus 20 ~~~~s~~~~~~nK~~~~~-----~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~~---~-----~-~~~~~~~~l~ 84 (189)
-.++.....+..|..+++ .+.+ |..+..+....+.+.+.+.....+..+. +. . + ..+.+..++.
T Consensus 8 s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T PF03151_consen 8 SSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLIL 86 (153)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHH
Confidence 334455555666777776 4666 9999999999999988887665443211 00 0 0 1233444555
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
.++............++++++-.++++.....+.+.++++++++|+++..++.|+.+.++|+.+.+
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 556667888888999999999999999999999999999999999999999999999999998754
No 39
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.65 E-value=3.7e-06 Score=68.35 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHH-HHHHHH
Q 029720 17 ILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CINIVL 95 (189)
Q Consensus 17 ~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 95 (189)
.+.=.++.....+..|...++ .+ |...+ ++..++.+.+.+...... +....+ ...+...+.++++. .+++.+
T Consensus 153 ~l~aa~~~a~~~v~~r~~~~~--~~-~~~~~-~~~~~~~~~l~~~~~~~~--~~~~~~-~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 153 ALGAGACWAIYILSGQRAGAE--HG-PATVA-IGSLIAALIFVPIGALQA--GEALWH-WSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CC-chHHH-HHHHHHHHHHHHHHHHcc--CcccCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566776654 44 66664 455556655555543321 111111 22333345566654 678889
Q ss_pred hhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 96 ~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
++.++++.++...+++....|++..++++++++|+++..+++|..+++.|++...
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998874
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.63 E-value=1.5e-06 Score=60.71 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
..+.....+...+++..|++.+..+.++.|+++++.+++++||++++++++++.++++|+.+..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999999999999999999999999998764
No 41
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.61 E-value=9.4e-07 Score=71.99 Aligned_cols=135 Identities=10% Similarity=-0.030 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhH--------HHHH-HHHHH
Q 029720 16 AILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPED--------RWRR-IFPMS 86 (189)
Q Consensus 16 ~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~-~l~~~ 86 (189)
.++.-..+.....+..|...++.+.+ |..++.+++..+.+.+.+.....+..+....+..+ .... .+..+
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAA 227 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 34444444444556677777633466 99999999999988887775543211100000000 0010 11112
Q ss_pred H-HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 87 F-VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 87 ~-~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
. .+...+.+++.+++++++..+++.....|++++++++++++|+++..+++|..++++|+.+...
T Consensus 228 ~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 228 MGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1 2222234556799999999999999999999999999999999999999999999999998764
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.54 E-value=6.7e-06 Score=66.89 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
.+-.++..++.....+.+++.++++.++...+.+....|++.+++++++++|+++..++++.++++.|+.+...
T Consensus 214 ~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 214 AIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 44445555555677899999999999999999999999999999999999999999999999999999887643
No 43
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.49 E-value=2e-05 Score=64.14 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-----CccCChhHHHHHHHHHHHHH-HHHHHH
Q 029720 22 VFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKP-----LITVEPEDRWRRIFPMSFVF-CINIVL 95 (189)
Q Consensus 22 ~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~-~~~~~~ 95 (189)
.+.....+..|...++.+-+.......+++..+.+.........+..+ ....+ .+.+..++.++++- .+++.+
T Consensus 153 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~i~~t~~~~~l 231 (299)
T PRK11453 153 FSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID-MTTILSLMYLAFVATIVGYGI 231 (299)
T ss_pred HHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344455576554311111334555666655544433322211100 01122 23455566666544 578889
Q ss_pred hhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 96 ~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
++.++++.++.....+....|++..++++++++|+++..+++|..+++.|+.+...+
T Consensus 232 ~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 232 WGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999886543
No 44
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.47 E-value=6.4e-09 Score=81.40 Aligned_cols=172 Identities=12% Similarity=0.184 Sum_probs=125.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHH
Q 029720 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMS 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (189)
+++.+..+...=.-..|.-+..+.+.++-+. +.+-|...++.-...=+++..+...+++ +. -+..|+..+.++
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~~----~~~~~~hYilla 85 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR--KY----IKAKWRHYILLA 85 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh--HH----HHHHHHHhhhee
Confidence 5555444433333344566667788887775 4667887777766655554444443321 11 122455566677
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc-------cch-H
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL-------SFN-M 158 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~-------~~~-~ 158 (189)
+.-.-++.+-..|.||++....+++.+-..+-+++++|+++|.|..+.++.|+.++++|+.+++..|. ..| .
T Consensus 86 ~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~ 165 (336)
T KOG2766|consen 86 FVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPV 165 (336)
T ss_pred EEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCc
Confidence 66666666677899999999999999999999999999999999999999999999999998766542 233 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029720 159 FGFCAALFGCLATSTKTILAESLLHSY 185 (189)
Q Consensus 159 ~G~~~~l~s~~~~a~~~v~~~~l~~~~ 185 (189)
.|+++.+.++-+||..++..+.+-|+-
T Consensus 166 ~GD~lvi~GATlYaVSNv~EEflvkn~ 192 (336)
T KOG2766|consen 166 KGDFLVIAGATLYAVSNVSEEFLVKNA 192 (336)
T ss_pred cCcEEEEecceeeeeccccHHHHHhcC
Confidence 799999999999999999888877653
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.47 E-value=1.1e-07 Score=72.10 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc--
Q 029720 76 EDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-- 153 (189)
Q Consensus 76 ~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~-- 153 (189)
|..++...|.+++..+....+..+++.++++..+.+.++.--|+.+++++.+|+|+..-++++.++++.|+.+..+.|
T Consensus 50 k~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 50 KLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred eeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 445666788889999999999999999999999999999999999999999999999999999999999999887644
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029720 154 LSFNMFGFCAALFGCLATSTKTILAESLLHS 184 (189)
Q Consensus 154 ~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~ 184 (189)
...++.|+..++.|+...|+|-+.-|.....
T Consensus 130 ~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 130 HADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999999999999988754
No 46
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.40 E-value=3.7e-05 Score=64.17 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--------ccCChhHHHH
Q 029720 14 LLAILQWWVFNVTVIITNKWIFQKLD-----FKFPLSVSCIHFICSSIGAYLVIKVLKLKPL--------ITVEPEDRWR 80 (189)
Q Consensus 14 ~~~~~~~~~~s~~~~~~nK~~~~~~~-----f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~ 80 (189)
.+.++.-.+++....+..|..+++.+ .+ +..+..++..++.+++.+.....+..+. ...+ ...+.
T Consensus 196 ~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~-~~~~~ 273 (350)
T PTZ00343 196 FWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT-NYTKG 273 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-ccchH
Confidence 33344444445556667788776532 34 6667777788888888776543321100 0000 00111
Q ss_pred HHHHHHHHHHHHHHHhh----hhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 81 RIFPMSFVFCINIVLGN----VSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 81 ~~l~~~~~~~~~~~~~~----~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
..+...+..+....++| .+++++++..+++.....|+++.++++++++|+++..+++|..++++|+.+.+
T Consensus 274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 12222223344444555 69999999999999999999999999999999999999999999999998865
No 47
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.38 E-value=5.3e-06 Score=66.96 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
......+.+++.++++.+++........+|++..+++++++||+++..++.|..++++|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 34567888999999999999999999999999999999999999999999999999999875
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.21 E-value=0.00012 Score=59.57 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
.++.....+.+++.++++.+++..+.+....|++..++++++++|+++..++.++.++++|+.+..
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444556788999999999999999999999999999999999999999999999999988887754
No 49
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.20 E-value=8.9e-05 Score=60.27 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHH----HHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFI----CSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSF 87 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 87 (189)
+...+.+.=.++.......+|.. +.+ |...++.|+. .+.+...+. .+.+| .+.+ .....+..++
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~----~~~-~~~~~~~~~~g~~~~~~~~~~~~---~~~~~---~~~~-~~~~~~~~Gi 219 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAF----GVD-GLSVLLPQAIGMVIGGIIFNLGH---ILAKP---LKKY-AILLNILPGL 219 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc----CCC-cceehhHHHHHHHHHHHHHHHHH---hcccc---hHHH-HHHHHHHHHH
Confidence 44444444444445555667754 245 8888777766 333332222 11111 1222 3333444777
Q ss_pred HHHHHHHHhhhhhc-cccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHH----HHHHHHHHhhhhhc
Q 029720 88 VFCINIVLGNVSLR-YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTS 150 (189)
Q Consensus 88 ~~~~~~~~~~~sl~-~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~----~~~~l~~~Gv~l~~ 150 (189)
+......++..+.+ +.+++.+.++.+..|+...+.+++++||+.+++++ ++.+++++|+.+..
T Consensus 220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 78888999999999 99999999999999999999999999999999999 99999999988764
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.10 E-value=2.9e-05 Score=55.66 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=61.5
Q ss_pred HHHH-HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHH--HhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 84 PMSF-VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWL--VWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 84 ~~~~-~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~--~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
..++ ++.++..+.+.+++..|++.+.-+.+..++.+.+.++. ++||++++++++++.++++|+.+...+
T Consensus 52 ~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 52 LLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4554 57889999999999999999999999999889888885 799999999999999999999998654
No 51
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.07 E-value=0.00061 Score=54.26 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 77 DRWRRIFPMSFVFC-INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 77 ~~~~~~l~~~~~~~-~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
..+......+++.. ....+.+.+++..+++..+.+....|++.+++++++++|+++.+++.+..+++.|+.+....
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 35555666666655 58899999999999999999999999999999999999999999999999999999887543
No 52
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.92 E-value=8.7e-05 Score=52.42 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHhHHHHHh-hhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~-~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
.+...++++.+..+...++++.|++.+..+- ....+.+.+.+++++||++++.+++++.++++|+......
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3445567788999999999999999988774 6899999999999999999999999999999999987543
No 53
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.78 E-value=0.00025 Score=49.37 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHh-hhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~-~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
.-+++..+..+...++++.|++.+.... ....+.+.+.+++++||++++.++.++.++++|+.....
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4456788888889999999999988885 478899999999999999999999999999999998754
No 54
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00025 Score=48.76 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 83 l~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
+...+++..++.+-..++++.|++.+..+ .-...+.+++.+++++||+.+..+++++.++++|+.....
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 33456678889999999999999987755 6678889999999999999999999999999999987654
No 55
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.75 E-value=0.00032 Score=48.41 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhhccccHhHHHHHh-hhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 84 PMSFVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~sl~~~~v~~~~il~-~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
....++..+..+-..+++..|++.+..+- -...+.+.+.+++++||++++.++.++.++++|+.....
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34556788888999999999999887664 488899999999999999999999999999999988753
No 56
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.75 E-value=0.0015 Score=53.30 Aligned_cols=138 Identities=10% Similarity=0.142 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHH--Hh-cCCCccC--ChhHHHHHHHHHHH
Q 029720 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKV--LK-LKPLITV--EPEDRWRRIFPMSF 87 (189)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~--~~-~~~~~~~--~~~~~~~~~l~~~~ 87 (189)
....+....++........|.++++++-+ |....++.-..+.+...+.... .+ ..+..+. +.++.+..++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666677777777888888877766 8888888888888877666544 22 1111111 11234555556666
Q ss_pred HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 88 ~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
.......+.+...+..+....+++..+--+++++++.+++++++++.+|.|+.++++|..+-..
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 6666666667778889999999999999999999999999999999999999999999988654
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.70 E-value=0.00042 Score=48.12 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 84 PMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
.....+..+..+-..++++.|++.+-.+ .....+.+.+.+++++||++++.++.++.++++|+....
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3455677888889999999999988766 457789999999999999999999999999999998753
No 58
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.68 E-value=0.0012 Score=53.00 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHH----HHHHHHHHhhhhhcc
Q 029720 77 DRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTSV 151 (189)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~----~~~~l~~~Gv~l~~~ 151 (189)
+.+..-+..+++.+.+...+..|+++..++...=+ ....-+.+.+.++++++|-.+.+++ ++++++++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 35666666788899999999999999988877644 4667778999999999998877766 488999999999876
Q ss_pred cccc--------chHHHHHHHHHHHHHHHHHHHHHHH
Q 029720 152 TELS--------FNMFGFCAALFGCLATSTKTILAES 180 (189)
Q Consensus 152 ~~~~--------~~~~G~~~~l~s~~~~a~~~v~~~~ 180 (189)
.|.+ ....|+...+++.+.|..|.+..|-
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5522 2256999999999999999999765
No 59
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.66 E-value=0.0023 Score=50.55 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHH-HHHHH
Q 029720 16 AILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVF-CINIV 94 (189)
Q Consensus 16 ~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 94 (189)
+.+.-+.|+..+++..|.+=+. -+ ...-...-+.++.++..++-.... .+.+....-.-.-+-.+++. .+.+.
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g~~--~~-g~~g~a~gm~vAaviv~Pig~~~a---g~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 152 LALGAGACWALYIVLGQRAGRA--EH-GTAGVAVGMLVAALIVLPIGAAQA---GPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHhHHHHHHHHHcchhccc--CC-CchHHHHHHHHHHHHHhhhhhhhc---chhhcChHHHHHHHHHHHHhcccchH
Confidence 3334445566666666655532 23 333444566667766666643211 11111111111112222332 57788
Q ss_pred HhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 95 LGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 95 ~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
++..++.+.|...+.++.+..|.+.++.++++++|++|..||+++..+++++.-.
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999998877643
No 60
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.45 E-value=0.00039 Score=54.11 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=69.3
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccccc---------------------------c
Q 029720 103 IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------------------------S 155 (189)
Q Consensus 103 ~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~---------------------------~ 155 (189)
+++|.....++..|+++++.+....+|+++..++++..+...|+.....+|. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5789999999999999999999999999999999999999999875322110 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029720 156 FNMFGFCAALFGCLATSTKTILAESLLHSYK 186 (189)
Q Consensus 156 ~~~~G~~~~l~s~~~~a~~~v~~~~l~~~~~ 186 (189)
..+.|....+.+..+.++-.+++|+..|+++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD 112 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence 3466777788888899999999999887654
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.31 E-value=0.01 Score=49.25 Aligned_cols=134 Identities=12% Similarity=0.148 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhH-HHHHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPED-RWRRIFPMSFVFC 90 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 90 (189)
..+..+.+|++.++ ..|+..++ .+ +......-.+++.++..+.....++.+.++.++.. .....+-.++...
T Consensus 172 l~l~~a~lya~~nV----~~E~~v~~--~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf 244 (334)
T PF06027_consen 172 LALLGAILYAVSNV----LEEKLVKK--AP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF 244 (334)
T ss_pred HHHHHHHHHHHHHH----HHHHhccc--CC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence 34445555555444 45777775 44 44444444444555444433322322222333221 1222222223334
Q ss_pred HHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 91 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 91 ~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
....+....++..++.+..+--.++.++.++.+.+++|+++++..++|.+++++|..+....
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence 44445577788888888888889999999999999999999999999999999999997653
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.26 E-value=0.012 Score=47.35 Aligned_cols=125 Identities=12% Similarity=0.071 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHH
Q 029720 13 SLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCIN 92 (189)
Q Consensus 13 ~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 92 (189)
.....++=......+....|+. +.+ |....+-|..- .++..+...... ++ ...+++.++ -+..++.++.+
T Consensus 139 gi~~Ll~stigy~~Y~~~~~~~----~~~-~~~~~lPqaiG-m~i~a~i~~~~~--~~-~~~~k~~~~-nil~G~~w~ig 208 (269)
T PF06800_consen 139 GILALLISTIGYWIYSVIPKAF----HVS-GWSAFLPQAIG-MLIGAFIFNLFS--KK-PFFEKKSWK-NILTGLIWGIG 208 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCC-hhHhHHHHHHH-HHHHHHHHhhcc--cc-cccccchHH-hhHHHHHHHHH
Confidence 3333333333344555556652 244 77777777553 333333322212 11 222233344 44588999999
Q ss_pred HHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHH----HHHHHHHHhhh
Q 029720 93 IVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGIL 147 (189)
Q Consensus 93 ~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~----~~~~l~~~Gv~ 147 (189)
..++..|.+.+.++..-.+.++.++...+.+.+++||+=++|++ .+++++++|.+
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999888765 45555555544
No 63
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.22 E-value=0.035 Score=40.16 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 029720 24 NVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVLGNVSLRYI 103 (189)
Q Consensus 24 s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~ 103 (189)
......+|-.+-++. .+|..-++.-+.++.+.+.+.....+..+.... ++.+++.+ .-+++-.....+...+....
T Consensus 13 i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~-~~~p~w~~-lGG~lG~~~V~~~~~~vp~l 88 (138)
T PF04657_consen 13 IALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLITGRPSLASL-SSVPWWAY-LGGLLGVFFVLSNIILVPRL 88 (138)
T ss_pred HHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHHhcccccchh-ccCChHHh-ccHHHHHHHHHHHHHHhhhh
Confidence 334445666666653 359999999999898888777666443222222 12234433 36677788888899999999
Q ss_pred cHhHHHHH-hhhhHHHHHHHHHH----HhhcccChhHHHHHHHHHHhhhh
Q 029720 104 PVSFMQTI-KSFTPATTVVLQWL----VWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 104 ~v~~~~il-~~~~pi~~~il~~~----~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
+++..+.+ -..+-+..++.+.+ .-|+++++++.+++.++++|+.+
T Consensus 89 G~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 89 GAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 98888866 56677788888887 35788999999999999999864
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.21 E-value=0.0019 Score=43.56 Aligned_cols=57 Identities=9% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHH
Q 029720 86 SFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPI 142 (189)
Q Consensus 86 ~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~ 142 (189)
...+..+..+...++++.|++...-+ .....+.+.+.+.+++||+++..++.++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34678899999999999999998655 5689999999999999999999999998764
No 65
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.13 E-value=0.057 Score=43.61 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCChhHHHHHHHHHHHHHHHHHHHhhh
Q 029720 20 WWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL-ITVEPEDRWRRIFPMSFVFCINIVLGNV 98 (189)
Q Consensus 20 ~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 98 (189)
+...|.+.....|...+ .+ +.+=-+..+..-..............+. ...+....+..+...|...+....++..
T Consensus 155 ~la~sf~~Ygl~RK~~~---v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKKLK---VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHhcC---Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 34444455444454444 34 5555556666555555444433332221 0101223455566677888999999999
Q ss_pred hhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 99 SLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 99 sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
|-+.+|.++.-.+....|....+++.++++|+++..+..+-+.+-.|+++.+.
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887654
No 66
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.98 E-value=0.0033 Score=51.63 Aligned_cols=140 Identities=9% Similarity=-0.004 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHHHHHH-HHHHHHhcCCCc----cCChhHHHHHH
Q 029720 10 VFRSLLAILQWWVFNVTVIITNKWIFQ--KLDFKFPLSVSCIHFICSSIGAY-LVIKVLKLKPLI----TVEPEDRWRRI 82 (189)
Q Consensus 10 ~~~~~~~~~~~~~~s~~~~~~nK~~~~--~~~f~~p~~l~~~r~~~~~~~l~-~~~~~~~~~~~~----~~~~~~~~~~~ 82 (189)
++..+..+..+......-++..|.++. ..+.+ ++.+..++.-++...+. ++....+. +.. ..++.-.....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcc-cceeeeeccccchhhHHH
Confidence 345566677777777777788888884 34677 99999999888888888 76544221 111 10121123333
Q ss_pred HHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 83 l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
+..+.+....+......+..+++=++++.....-+.+...++++++++.++.+..|..+++.|+.+.+.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 344455555566677788899999999999999999999999999999999999999999999999764
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.68 E-value=0.0047 Score=50.51 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=59.5
Q ss_pred HHH-HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 85 MSF-VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 85 ~~~-~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
.|+ .+..+..++..|+.+.|.+..+=+.+...++.++++..++|||++++.+.|+.+++.|+.+..
T Consensus 55 ~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 55 IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 443 456777899999999999999999999999999999999999999999999999999988753
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.64 E-value=0.046 Score=42.42 Aligned_cols=64 Identities=5% Similarity=0.014 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
..+..+....+-...++|.+.....+...+.++++.+++.++++|+++..++.+..+++.|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4455566777788899999999999999999999999999999999999999999999988754
No 69
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.51 E-value=0.0088 Score=41.72 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
++..+|..+ +..+...++..+...+++...-+ .+++=++|++.++++.+|..+++.++++.+++.|+.+.
T Consensus 42 ~~y~ipf~l-Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLL-NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 444444444 33445556668888888888866 59999999999999999999999999999999998763
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.38 E-value=0.24 Score=41.34 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhccc---C----hhHHHHHHHHHHhhhhh
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYF---D----WRIWASLVPIVGGILLT 149 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~---s----~~~~~~~~l~~~Gv~l~ 149 (189)
.+...+..+++.+.+...+..+.++..++...-+ .-+.-++..++..++++|-. + .--..+++++++|+.+.
T Consensus 72 ~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~ 151 (345)
T PRK13499 72 TLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIV 151 (345)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3444555677888999999999999999888755 56667788888888887643 2 23458889999999997
Q ss_pred cc----ccc--------cc-hHHHHHHHHHHHHHHHHHHH
Q 029720 150 SV----TEL--------SF-NMFGFCAALFGCLATSTKTI 176 (189)
Q Consensus 150 ~~----~~~--------~~-~~~G~~~~l~s~~~~a~~~v 176 (189)
.. .|. +. ...|+++++++.+.++.|..
T Consensus 152 s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 152 GRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred HHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 66 332 12 25799999999999999993
No 71
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.29 E-value=0.92 Score=35.79 Aligned_cols=49 Identities=6% Similarity=0.208 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHH
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLV 126 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~ 126 (189)
++...+..+++....+.+.+.++++.|++..+....+.|++.++++.++
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666777767899999999999999999999999999999998764
No 72
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.03 E-value=0.4 Score=40.22 Aligned_cols=125 Identities=9% Similarity=0.042 Sum_probs=86.3
Q ss_pred HHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHHHHHHHHh--cCCCccCChhHHHHHHHHHHHH-HHHHHHHhhhhhcc
Q 029720 28 IITNKWIFQKL--DFKFPLSVSCIHFICSSIGAYLVIKVLK--LKPLITVEPEDRWRRIFPMSFV-FCINIVLGNVSLRY 102 (189)
Q Consensus 28 ~~~nK~~~~~~--~f~~p~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~sl~~ 102 (189)
.++-|.=.++. +.+-|....+.-. ++.+.+++...... ..++..+|...++-.++..++. ...+=.++..|.-.
T Consensus 263 ~vllk~~~~~eg~rvdi~lffGfvGL-fnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~l 341 (416)
T KOG2765|consen 263 TVLLKRKIGDEGERVDIQLFFGFVGL-FNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLL 341 (416)
T ss_pred HHHHHhhcccccccccHHHHHHHHHH-HHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHh
Confidence 33447766654 3554555554433 35555554333222 2344445444445445444533 35677788888889
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc
Q 029720 103 IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (189)
Q Consensus 103 ~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 153 (189)
++.-..++-.+.+.+..++.+.++.++++++..++|.+.+++|-++++..+
T Consensus 342 Ts~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 342 TSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred ccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 999999999999999999999999999999999999999999998887654
No 73
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.015 Score=47.56 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=60.6
Q ss_pred HHH-HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 85 MSF-VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 85 ~~~-~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
.|. .+..+-..++.|+.+.|.+..+-+.+++.+..++++..++||++++.-.+|+.++++|..+.+
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 454 567888999999999999999999999999999999999999999999999999999977754
No 74
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=1.3 Score=32.55 Aligned_cols=132 Identities=10% Similarity=0.099 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhHHHHHHHHHHHHHHHHHHH
Q 029720 16 AILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLITVEPEDRWRRIFPMSFVFCINIVL 95 (189)
Q Consensus 16 ~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 95 (189)
..+.-+.+.....-.|-.+-+. -++|..=++.-+.+++..+..+.......+......+.+|+.+ .-|.+-+.....
T Consensus 9 ~~i~aG~~l~~Q~~iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~-~GG~lGa~~vt~ 85 (150)
T COG3238 9 FAILAGALLPLQAAINGRLARY--LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW-IGGLLGAIFVTS 85 (150)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH-Hccchhhhhhhh
Confidence 3334444444555567767665 3468888888888888777666555332232221122233333 344444555555
Q ss_pred hhhhhccccHhHHHHH-hhhhHHHHHHHHHH-Hh---hcccChhHHHHHHHHHHhhhhhc
Q 029720 96 GNVSLRYIPVSFMQTI-KSFTPATTVVLQWL-VW---RKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 96 ~~~sl~~~~v~~~~il-~~~~pi~~~il~~~-~~---~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
+........+...+.+ -+..-+..++.+.+ ++ +++++..++.+++++++|+.+..
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5556666666665544 67777888888877 33 46789999999999999966554
No 75
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.03 E-value=0.07 Score=42.79 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
++....-+|++..++.++-..++|.=-++-.++.+.+..++..+.+.+++++.|++..|+|.+.++.....+
T Consensus 252 dr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 252 DRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred ceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 455566688888888888889999999999999999999999999999999999999999998877766554
No 76
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.97 E-value=1.4 Score=35.96 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhc-CCCccC--ChhHHHHHHHHHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKL-KPLITV--EPEDRWRRIFPMSF 87 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~ 87 (189)
+...+.+..+..+=..++-.-+.++++++.+ +..+.+.--++..+.........+. .+..++ ..+|.+++++..+.
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 4455555555554444555556677765555 6555554444444433333222221 111000 12457888988999
Q ss_pred HHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 88 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 88 ~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
+.+.+..+-..-++.-..-+.+++.-+-=+++++++.+.++.+.++.||.++..+..|+.+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 8877776665555555555666677777889999999999999999999999999988876
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.47 E-value=4.5 Score=32.08 Aligned_cols=129 Identities=13% Similarity=0.031 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHh-cCCCccCChhHHHHHHHH-HHHH
Q 029720 11 FRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLK-LKPLITVEPEDRWRRIFP-MSFV 88 (189)
Q Consensus 11 ~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~ 88 (189)
....+.++.-.++|..-.+.++.++++.+ .|..+--.|+-...+.+.+.....+ ..+..+...-+.+..... ....
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 34455566666667666677778888644 3666666776665555544432222 111111000111211222 2234
Q ss_pred HHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHH
Q 029720 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVP 141 (189)
Q Consensus 89 ~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l 141 (189)
.+.+-+.-...++|.+-=.-....+...+.++++++.+++.+++....+|..+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 45566666778899988888888999999999999999999999988877643
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.68 E-value=7.1 Score=32.70 Aligned_cols=69 Identities=7% Similarity=0.052 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccHhHHHH---Hh-hhhHHHHHHHHHHHhhcccC------hhHHHHHHHHHHhhhhhccc
Q 029720 83 FPMSFVFCINIVLGNVSLRYIPVSFMQT---IK-SFTPATTVVLQWLVWRKYFD------WRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 83 l~~~~~~~~~~~~~~~sl~~~~v~~~~i---l~-~~~pi~~~il~~~~~~e~~s------~~~~~~~~l~~~Gv~l~~~~ 152 (189)
...++....+..++..+-...++....+ +. ++..++..+-+. ++||+=+ +-.+.+++++++|..+...+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 3455667778888877777775554444 66 554455555555 6888755 44467888888887776543
No 79
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=3.4 Score=33.94 Aligned_cols=137 Identities=9% Similarity=-0.087 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--ccCC-h--hHHHHHHHHHHHH
Q 029720 14 LLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPL--ITVE-P--EDRWRRIFPMSFV 88 (189)
Q Consensus 14 ~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~--~~~~-~--~~~~~~~l~~~~~ 88 (189)
..+......+........|.-.+.-+++ -..+.++.-+.....+.....+++..+. ...+ + ...+..+..-+++
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 3455555555566666777777765565 5666677777777776666555442220 0000 1 1123333333344
Q ss_pred HHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 89 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 89 ~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
..+-..+...+.+.+|+..+++.....-..+.+...++++++.++....|+.+.+.|..+.++
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 445666777788889998888888777777777777778888999999999999888887654
No 80
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.05 E-value=0.51 Score=37.33 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
++.+..+++..+++.++-..-..+-++-.-+++..+--.|+.+.+.++++..++.+||++..++..|...
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 5556666777777777666655555555555666677789999999999999999999999999988775
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.17 E-value=6.7 Score=32.72 Aligned_cols=162 Identities=13% Similarity=0.077 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHHHHHHHhcCCC----ccCChhHHHHHHHHHH
Q 029720 12 RSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSC-IHFICSSIGAYLVIKVLKLKPL----ITVEPEDRWRRIFPMS 86 (189)
Q Consensus 12 ~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~-~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ 86 (189)
..+++..+-.+++.+..+--|.+=+ + .++-.+ .|.+++.++.=....... .|. ....+.+........+
T Consensus 7 ~Gii~h~iGg~~~~sfy~P~kkvk~---W--sWEs~Wlv~gi~swli~P~~~a~l~-ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 7 LGIIFHAIGGFASGSFYVPFKKVKG---W--SWESYWLVQGIFSWLIVPWLWALLA-IPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHhhhhccchhhcCC---c--cHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHhCChhHHHHHHHHH
Confidence 3444555555666666555554432 2 233332 355555554422221111 121 0011234555566678
Q ss_pred HHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHh-------hcccChhHHHHHHHHHHhhhhhcc----cc-
Q 029720 87 FVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVW-------RKYFDWRIWASLVPIVGGILLTSV----TE- 153 (189)
Q Consensus 87 ~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~-------~e~~s~~~~~~~~l~~~Gv~l~~~----~~- 153 (189)
++...+...+-.+.+|+.++..+-+ --+.-.+-.++-.++. .++-.....+++++.++|+.+... .|
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 8888888888889999887776633 1222222222222222 223345678999999999998642 11
Q ss_pred ------ccch-HHHHHHHHHHHHHHHHHHHHHH
Q 029720 154 ------LSFN-MFGFCAALFGCLATSTKTILAE 179 (189)
Q Consensus 154 ------~~~~-~~G~~~~l~s~~~~a~~~v~~~ 179 (189)
.++| ..|.+.+++|.+..|.++.-.+
T Consensus 161 ~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 161 ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1334 3699999999999999887554
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=85.69 E-value=0.66 Score=36.89 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHH----HHHHHHHhhhh
Q 029720 78 RWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWA----SLVPIVGGILL 148 (189)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~----~~~l~~~Gv~l 148 (189)
+...-...++..+.++.+...|-+.+.+++.-.+.++..+...+-+.+++|||=+.+++. ++++++.|..+
T Consensus 208 ~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 208 YTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 333344578888888888888999999999999999999999999999999999988864 45555555444
No 83
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.26 E-value=17 Score=28.79 Aligned_cols=119 Identities=7% Similarity=-0.036 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhc-CCC---ccCChhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 029720 26 TVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKL-KPL---ITVEPEDRWRRIFPMSFVFCINIVLGNVSLR 101 (189)
Q Consensus 26 ~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~ 101 (189)
+..+..|...+-.+|. -..-.++.-..+..++..+..+.+. .|. ..+ +.|....+..-|++..+...+.-..+.
T Consensus 169 afVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl-~~d~l~am~ISgl~svgiSy~saWcvr 246 (309)
T COG5070 169 AFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL-SVDSLMAMFISGLCSVGISYCSAWCVR 246 (309)
T ss_pred HHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC-ChHHHHHHHHHHHHHhhhhhccceeEe
Confidence 3444444444433455 5555666666666666555544332 111 111 234455666667777777778888888
Q ss_pred cccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhh
Q 029720 102 YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGI 146 (189)
Q Consensus 102 ~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv 146 (189)
-++...+++..++.-...++-+.++++|..++..+.++++.....
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg 291 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSG 291 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHH
Confidence 899999999999988888888888888888887777766554433
No 84
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.80 E-value=20 Score=29.34 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCcc---------C-ChhHHHHH----
Q 029720 16 AILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLKPLIT---------V-EPEDRWRR---- 81 (189)
Q Consensus 16 ~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~---------~-~~~~~~~~---- 81 (189)
.+...++..+.+..=.|++..+ +.+ |.....++..++.+++.++.....+.|..+ . ++.+.++.
T Consensus 181 IiiaqiivaiQ~v~Eek~l~~~-nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~ 258 (372)
T KOG3912|consen 181 IIIAQIIVAIQMVCEEKQLKKS-NVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQES 258 (372)
T ss_pred HHHHHHHHHHHHHHHHhhhhhc-cCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCC
Confidence 4455556666665556666554 677 999999999999777766654443333221 1 11111111
Q ss_pred --HHHHHHHHHHHHHHhhhh----hccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 82 --IFPMSFVFCINIVLGNVS----LRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 82 --~l~~~~~~~~~~~~~~~s----l~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
+......+..++.+.|.+ -++.|+.+-.++-+.-..++=+++..+..|++..-|+++-++...|.++..
T Consensus 259 p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 259 PSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred chhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112233344444432 355677778888888888899999999999999999999999999998864
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=79.46 E-value=0.096 Score=41.49 Aligned_cols=101 Identities=20% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHH----HHHHHHHHhhhhhcccc
Q 029720 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTSVTE 153 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~----~~~~l~~~Gv~l~~~~~ 153 (189)
+---+..+++.+.+...+..|.++.+++.+.=+ .-..-+-+-+++.+.++|-.+..+. .++++++.|+.+.+.+|
T Consensus 59 ~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 59 FIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred HHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence 333444566778888899999999988877644 4455666778889999998777665 68889999999988766
Q ss_pred c--------cchHHHHHHHHHHHHHHHHHHHHHH
Q 029720 154 L--------SFNMFGFCAALFGCLATSTKTILAE 179 (189)
Q Consensus 154 ~--------~~~~~G~~~~l~s~~~~a~~~v~~~ 179 (189)
. +..-.|+...+.|.+.|-.|.+..+
T Consensus 139 ~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 139 RNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred cccccccChHhhhhheeeeeeeccceeeeEeeec
Confidence 3 1123577777777777777766543
No 86
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=75.12 E-value=4.9 Score=27.69 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccHhHHH-HHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~-il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
+....|..+=.+ +..++..-++..+.+.+. +-.+++-.|+++.+..+..|....+.+++..+++.|+.+.
T Consensus 53 w~Y~iPFllNqc-gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQC-GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 344445544333 334455566666666555 4467788999999999988889999999999999998764
No 87
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=69.20 E-value=13 Score=25.48 Aligned_cols=60 Identities=10% Similarity=0.303 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhccccHhHHHHHh-hhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 90 CINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 90 ~~~~~~~~~sl~~~~v~~~~il~-~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
+.+.-.+-.+.+.-|.+--.++. ..+-..-+.++.+++||+++++...+-..+++++..+
T Consensus 46 ~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 46 CLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 55555555666554444333332 2333344567788999999999999998888777643
No 88
>PRK02237 hypothetical protein; Provisional
Probab=68.10 E-value=18 Score=24.97 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 109 QTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 109 ~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
....-...+...+-.+.+-|++|++..+.+..++++|+.+.-.
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3334455566667788889999999999999999999987644
No 89
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.71 E-value=18 Score=24.95 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 110 TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 110 il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
...-...+.+.+-.+.+-|++|++..+++..++++|+.+.-+.
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3344556667778888899999999999999999999886543
No 90
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=55.41 E-value=88 Score=23.59 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccccc
Q 029720 108 MQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELS 155 (189)
Q Consensus 108 ~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~ 155 (189)
++...-...+...+..+...|+-.....+.+..+.+.|..-...+|.+
T Consensus 25 AT~~livAt~i~l~~~w~~~rkv~km~l~s~~~v~vFG~lTl~f~~d~ 72 (180)
T COG2917 25 ATAVLIVATVIQLAILWIKYRKVEKMQLISGVVVVVFGGLTLIFHNDT 72 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhHhhccCcc
Confidence 333333344555666677777666666666677777776655555543
No 91
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.33 E-value=38 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=25.7
Q ss_pred HHHHHHHhhcccChhHHHHHHHHHHhhhhh
Q 029720 120 VVLQWLVWRKYFDWRIWASLVPIVGGILLT 149 (189)
Q Consensus 120 ~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~ 149 (189)
+.++.+.+||.+++..+.+-..+.+|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457888999999999999998888888765
No 92
>PRK11056 hypothetical protein; Provisional
Probab=51.40 E-value=81 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcccChh
Q 029720 107 FMQTIKSFTPATTVVLQWLVWRKYFDWR 134 (189)
Q Consensus 107 ~~~il~~~~pi~~~il~~~~~~e~~s~~ 134 (189)
.-.+-.+..|+..++.-.++.+.|...+
T Consensus 87 yPeiGSNF~p~il~~~L~~Wi~~kl~~~ 114 (120)
T PRK11056 87 YPEIGSNFFPAVLSVILVFWIGRKLRNR 114 (120)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHhcc
Confidence 3345666777777777777666555443
No 93
>COG2510 Predicted membrane protein [Function unknown]
Probab=48.90 E-value=99 Score=22.27 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhh
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWR 128 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~ 128 (189)
.+.+.++.-++.-.+++..++.+++.+|+...+..+..-.+..|
T Consensus 11 sA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g 54 (140)
T COG2510 11 SALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTG 54 (140)
T ss_pred HHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455788899999999999999999998865555444444444
No 94
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=44.60 E-value=39 Score=23.01 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 114 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 114 ~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
..|++..++.-.++.++++...+..+.++++|+++..
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 4577777777778888887777888888888887653
No 95
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=43.60 E-value=34 Score=23.46 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhccc
Q 029720 113 SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (189)
Q Consensus 113 ~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~ 152 (189)
-...+...+-.+..-|.+|++..+.+..+.++|+.+...+
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3445566677778889999999999999999998776543
No 96
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=43.04 E-value=1.9e+02 Score=23.81 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=38.1
Q ss_pred cHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc
Q 029720 104 PVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (189)
Q Consensus 104 ~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 153 (189)
.++.+..+...---.+.+++++++.++++.+-.-+.++++.|+.+=.+.+
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34444444444455788999999999999999999999999999855444
No 97
>PRK00259 intracellular septation protein A; Reviewed
Probab=42.30 E-value=1.5e+02 Score=22.39 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=13.0
Q ss_pred hcccChhHHHHHHHH-HHhhhhhccccc
Q 029720 128 RKYFDWRIWASLVPI-VGGILLTSVTEL 154 (189)
Q Consensus 128 ~e~~s~~~~~~~~l~-~~Gv~l~~~~~~ 154 (189)
++|.+..++++..++ +.|..-.-.+|.
T Consensus 44 ~~~v~~m~~i~~~lv~vfGglTl~l~d~ 71 (179)
T PRK00259 44 YRKVEKMQLISLVVVVVFGGLTLVFHDD 71 (179)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 346666666554443 334333334443
No 98
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.91 E-value=87 Score=25.69 Aligned_cols=132 Identities=10% Similarity=0.030 Sum_probs=72.1
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC----CCccCChhHHHHHHHHHHHHH-HH
Q 029720 18 LQWWVFNVTVI-ITNKWIFQKLDFKFPLSVSCIHFICSSIGAYLVIKVLKLK----PLITVEPEDRWRRIFPMSFVF-CI 91 (189)
Q Consensus 18 ~~~~~~s~~~~-~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~-~~ 91 (189)
..|.....+++ +..|..+...+ ++=+.++++--..+.+...+.+...+.. ..+..+..+.|..+..-|++. ..
T Consensus 190 GVlaSl~vAlnaiytkk~l~~v~-~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m 268 (347)
T KOG1442|consen 190 GVLASLAVALNAIYTKKVLPPVG-DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM 268 (347)
T ss_pred HHHHHHHHHHHHHhhheeccccc-CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence 33444444333 55564444322 4456788888888888777776553321 111222222333333333332 23
Q ss_pred HHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 92 NIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 92 ~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
++... .=.+.+|+-++.+-....-..=-+++..+++|.-+...|-+.++++.|....++
T Consensus 269 gyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 269 GYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred hheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 33222 223444444444444444444556788899999999999999888888877653
No 99
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=37.40 E-value=1.1e+02 Score=21.89 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHH
Q 029720 7 TWSVFRSLLAILQWWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYL 60 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~nK~~~~~~~f~~p~~l~~~r~~~~~~~l~~ 60 (189)
.|.++....+.+++.+.++...++-|....... +||.+++-...+.-..+.+.
T Consensus 52 ~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~-NY~fFL~QlTt~gyvpIffa 104 (130)
T PF08627_consen 52 SKENFKLLVYVVVYVVSGVINRVLYKKMTNPMK-NYPFFLNQLTTFGYVPIFFA 104 (130)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHhcccceehHHHH
Confidence 467777887888888888877777777776532 47777766544433333333
No 100
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=34.45 E-value=3.3e+02 Score=24.16 Aligned_cols=76 Identities=11% Similarity=-0.050 Sum_probs=44.6
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHH--hhcccChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 029720 103 IPVSFMQTIKSFTPATTVVLQWLV--WRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILA 178 (189)
Q Consensus 103 ~~v~~~~il~~~~pi~~~il~~~~--~~e~~s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~ 178 (189)
.+...+.++.++.-+-.++.+.+. ++++.+.++.+.......|+.+....-.+..+......++..+++.......
T Consensus 251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~ 328 (524)
T PF05977_consen 251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSL 328 (524)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777666666664 4677777777666666666655443332333344444455555555554443
No 101
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=33.42 E-value=1.7e+02 Score=20.48 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=20.7
Q ss_pred cHhHHHHHhhhhHHHHHHHHHHHhhcccChh
Q 029720 104 PVSFMQTIKSFTPATTVVLQWLVWRKYFDWR 134 (189)
Q Consensus 104 ~v~~~~il~~~~pi~~~il~~~~~~e~~s~~ 134 (189)
-+..-.+-.+..|+..++.-.++.+.|...+
T Consensus 84 raqyPeiGSNFfp~il~l~L~~Wi~~kl~~~ 114 (117)
T PF07226_consen 84 RAQYPEIGSNFFPSILCLILVFWIGYKLGFR 114 (117)
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3444556677888888877777776665544
No 102
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=30.06 E-value=2.6e+02 Score=23.32 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=45.7
Q ss_pred hhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 96 GNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 96 ~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
...-+..+++-+-++..-..-+.+.+++..+.+++.+..-|++......|+..-.
T Consensus 260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 3444555666667777778888999999999999999999999999999999873
No 103
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.88 E-value=1.9e+02 Score=20.74 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhhhhhccccccchHHHHHH
Q 029720 134 RIWASLVPIVGGILLTSVTELSFNMFGFCA 163 (189)
Q Consensus 134 ~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~ 163 (189)
..+++.+++.+|+.++..........|.+.
T Consensus 72 ~~ivs~vLil~g~~la~t~~~~i~~ig~~l 101 (143)
T COG3296 72 YSIVSFVLILAGVFLAATDISFIIIIGFFL 101 (143)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 344777788888887654333333444444
No 104
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=27.93 E-value=1.4e+02 Score=17.78 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029720 135 IWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHS 184 (189)
Q Consensus 135 ~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~ 184 (189)
..++..++++|+++..... .|....+.+....|.+....++++++
T Consensus 5 ~v~G~~lv~~Gii~~~lPG-----pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG-----PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567788888888765432 26667777777778777777777654
No 105
>PRK07668 hypothetical protein; Validated
Probab=25.10 E-value=3.6e+02 Score=21.62 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhhccccHh
Q 029720 86 SFVFCINIVLGNVSLRYIPVS 106 (189)
Q Consensus 86 ~~~~~~~~~~~~~sl~~~~v~ 106 (189)
.+-......+...+.+-....
T Consensus 206 ~~p~~i~~~f~~~~~~~~~~~ 226 (254)
T PRK07668 206 IIPLSIMFLFKYFNSEDVVPM 226 (254)
T ss_pred HHHHHHHHHHHHccccchhHH
Confidence 333333333433333333333
No 106
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=24.31 E-value=2e+02 Score=23.51 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHhhhhhccccHhHHH-HHhhhhHHHHHHHHHHHhhcc--cChhH----HHHHHHHHHhhhhhcc
Q 029720 90 CINIVLGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKY--FDWRI----WASLVPIVGGILLTSV 151 (189)
Q Consensus 90 ~~~~~~~~~sl~~~~v~~~~-il~~~~pi~~~il~~~~~~e~--~s~~~----~~~~~l~~~Gv~l~~~ 151 (189)
.....+-|.|+++-+..... +........+.+-+.++++|- .+..+ .+|+..++.|+.+.+.
T Consensus 224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 45666778888876543222 233344557777788888874 44433 3566777788877653
No 107
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.19 E-value=3.1e+02 Score=20.51 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHH-HHHhhhhhcccc
Q 029720 79 WRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVP-IVGGILLTSVTE 153 (189)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l-~~~Gv~l~~~~~ 153 (189)
..+..|+.+++..+.. .++-.++...-...+..++..++.. ++++..++.+..+ ++.|..-...+|
T Consensus 4 l~d~~P~i~Ffv~y~~--------~~i~~At~~~i~~~~~~v~~~~~~~-r~v~~~~~is~~lv~vfG~lTl~~~d 70 (176)
T PF04279_consen 4 LLDFGPLILFFVVYKT--------YGIFVATAVLIVATLAQVAYSWIRR-RKVPKMQWISLVLVLVFGGLTLLFHD 70 (176)
T ss_pred HHHHHHHHHHHHHHHH--------hCHHHHHHHHHHHHHHHHHHHHHHh-CcCchhHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666655442 2232333333333344444444444 4666666655443 334433333444
No 108
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=23.27 E-value=3.5e+02 Score=20.83 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=34.5
Q ss_pred hcccChhHHHHHHHHHHhhhhhcc-----ccccch--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029720 128 RKYFDWRIWASLVPIVGGILLTSV-----TELSFN--MFGFCAALFGCLATSTKTILAESLL 182 (189)
Q Consensus 128 ~e~~s~~~~~~~~l~~~Gv~l~~~-----~~~~~~--~~G~~~~l~s~~~~a~~~v~~~~l~ 182 (189)
++|+++.+.+.+.....-+.+++. -+.+.| .-.+.+.+++++..|+.--..|+..
T Consensus 156 sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~N 217 (226)
T COG4858 156 SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKN 217 (226)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777777666555554444332 122222 3456888899999999877777664
No 109
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=22.98 E-value=3.8e+02 Score=21.06 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=46.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHH---HHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 72 TVEPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATT---VVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 72 ~~~~~~~~~~~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~---~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
+.+++..+...+|+-.+++.-...-.......+.+...+-....-+|. ...+.+..+.+.+....++-.+.+.|...
T Consensus 95 ~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~Glyf 174 (224)
T PF09930_consen 95 DSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGLYF 174 (224)
T ss_pred CCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 444555677778887777544444444444555555555444444433 33344445556566778888899999775
Q ss_pred h
Q 029720 149 T 149 (189)
Q Consensus 149 ~ 149 (189)
.
T Consensus 175 L 175 (224)
T PF09930_consen 175 L 175 (224)
T ss_pred H
Confidence 4
No 110
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=22.51 E-value=91 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=24.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029720 154 LSFNMFGFCAALFGCLATSTKTILAESLLH 183 (189)
Q Consensus 154 ~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~ 183 (189)
.+.+..|.++.-+=.+.|++|.++++.+-+
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~e 130 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDE 130 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCC
Confidence 345678888888888999999999988653
No 111
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=22.45 E-value=3.4e+02 Score=20.38 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=44.9
Q ss_pred HHHHHHhhcccChhHHHHHHH-------HHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029720 121 VLQWLVWRKYFDWRIWASLVP-------IVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHS 184 (189)
Q Consensus 121 il~~~~~~e~~s~~~~~~~~l-------~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~l~~~ 184 (189)
..+..+.|..|+..+.+++.+ ++.|+.+.+..+.+.-....+.++.+++.+++-.++.....+|
T Consensus 87 f~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 87 FTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 345556677777777777765 4567777766655545678888888888888887776655544
No 112
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=22.02 E-value=65 Score=26.42 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhc
Q 029720 115 TPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 150 (189)
Q Consensus 115 ~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~ 150 (189)
--.+..+++.+.++..+++..|+|..++.+|..+..
T Consensus 278 RKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 278 RKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677888888899999999999999999988753
No 113
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.75 E-value=1.9e+02 Score=17.19 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhhcccc
Q 029720 138 SLVPIVGGILLTSVTE 153 (189)
Q Consensus 138 ~~~l~~~Gv~l~~~~~ 153 (189)
|++.++.|+.+....+
T Consensus 3 Gil~iv~Gi~~l~~p~ 18 (72)
T PF03729_consen 3 GILFIVLGILLLFNPD 18 (72)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 4445555555544433
No 114
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=21.28 E-value=1.6e+02 Score=17.83 Aligned_cols=20 Identities=10% Similarity=0.053 Sum_probs=14.2
Q ss_pred CccccchhhhHHHHHHHHHH
Q 029720 1 MEASLCTWSVFRSLLAILQW 20 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (189)
||++..+.|+...+...+.-
T Consensus 1 M~~Nvg~~dR~~R~~~G~~l 20 (66)
T PF11127_consen 1 MKKNVGTTDRIVRIIIGIVL 20 (66)
T ss_pred CCCCcchHHHHHHHHHHHHH
Confidence 89999999997555444333
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.62 E-value=2.5e+02 Score=20.82 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhhhc
Q 029720 135 IWASLVPIVGGILLTS 150 (189)
Q Consensus 135 ~~~~~~l~~~Gv~l~~ 150 (189)
.++|+++++.|+...+
T Consensus 12 iilgilli~~gI~~Lv 27 (191)
T PF04156_consen 12 IILGILLIASGIAALV 27 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666777766644
Done!