Query 029720
Match_columns 189
No_of_seqs 113 out of 1098
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 03:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 2.4E-07 8.3E-12 63.6 8.9 69 85-153 36-105 (110)
2 2i68_A Protein EMRE; transmemb 98.5 1.9E-07 6.3E-12 66.6 6.3 67 85-151 36-103 (137)
3 4dve_A Biotin transporter BIOY 15.1 3.5E+02 0.012 19.7 7.7 94 72-170 10-111 (198)
4 4ds7_E Spindle POLE BODY compo 9.6 1.9E+02 0.0066 16.4 2.0 16 2-17 7-22 (55)
5 3b9w_A Ammonium transporter fa 9.4 7.4E+02 0.025 20.2 14.4 83 89-173 187-275 (407)
6 3s8f_C Cytochrome C oxidase po 8.9 2.5E+02 0.0086 14.3 2.6 8 1-8 1-8 (34)
7 3fbl_A Putative uncharacterize 8.3 1.5E+02 0.005 17.5 1.2 16 170-185 21-36 (82)
8 2hac_A T-cell surface glycopro 6.6 3.3E+02 0.011 13.7 2.3 17 117-133 14-30 (33)
9 1kdx_B CREB; complex (transcri 4.3 2.8E+02 0.0094 13.5 0.7 13 126-138 9-21 (28)
10 3kg2_A Glutamate receptor 2; I 4.0 1.3E+03 0.046 19.7 5.5 25 158-182 591-615 (823)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.61 E-value=2.4e-07 Score=63.59 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcccc
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~~~ 153 (189)
..+.+..+..+...++++.|++....+ ....|+++++.+++++||++++.+++++.++++|+.+....+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345678889999999999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.51 E-value=1.9e-07 Score=66.63 Aligned_cols=67 Identities=19% Similarity=0.394 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhhccccHhHHHHH-hhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc
Q 029720 85 MSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 151 (189)
Q Consensus 85 ~~~~~~~~~~~~~~sl~~~~v~~~~il-~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~ 151 (189)
..+.+.++..+.+.++++.|++....+ ....|+++++++++++||++++.+++++.++++|+.+...
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999988887 8999999999999999999999999999999999998764
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=15.12 E-value=3.5e+02 Score=19.67 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=49.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhh---hccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhh
Q 029720 72 TVEPEDRWRRIFPMSFVFCINIVLGNVS---LRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 148 (189)
Q Consensus 72 ~~~~~~~~~~~l~~~~~~~~~~~~~~~s---l~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l 148 (189)
.++++++.|++...+++-++...+...+ +-..|+|+ ..+...+++.+.++..++=.....+=+++..+|+=+
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPV 84 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPV 84 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCcc
Confidence 4456667888887887777666666542 33334443 355566666666654443333444444445555444
Q ss_pred hcccccc-----chHHHHHHHHHHHHH
Q 029720 149 TSVTELS-----FNMFGFCAALFGCLA 170 (189)
Q Consensus 149 ~~~~~~~-----~~~~G~~~~l~s~~~ 170 (189)
...+... -...|++++..-+..
T Consensus 85 Fagg~gG~~~l~gPTgGYLiGF~~aA~ 111 (198)
T 4dve_A 85 LTGGNGGAASFLGPSGGYRIAWLFTPF 111 (198)
T ss_dssp BTTTBCCSGGGGSTTHHHHHHHHHHHH
T ss_pred ccCCCCchhHHhcchhHHHHHHHHHHH
Confidence 4332211 123577766654433
No 4
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=9.63 E-value=1.9e+02 Score=16.36 Aligned_cols=16 Identities=31% Similarity=0.140 Sum_probs=7.9
Q ss_pred ccccchhhhHHHHHHH
Q 029720 2 EASLCTWSVFRSLLAI 17 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (189)
||++..+.....+++|
T Consensus 7 ~~rlkFKTVAL~Vlac 22 (55)
T 4ds7_E 7 ERRLSFKTVALLVLAC 22 (55)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHH
Confidence 5666655444444333
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=9.44 E-value=7.4e+02 Score=20.17 Aligned_cols=83 Identities=10% Similarity=-0.078 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhhccccHh-----HHHHHhhhhHHHHHHHHHHHhhcccChhHHHHHHHHHHhhhhhcc-ccccchHHHHH
Q 029720 89 FCINIVLGNVSLRYIPVS-----FMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV-TELSFNMFGFC 162 (189)
Q Consensus 89 ~~~~~~~~~~sl~~~~v~-----~~~il~~~~pi~~~il~~~~~~e~~s~~~~~~~~l~~~Gv~l~~~-~~~~~~~~G~~ 162 (189)
.-..+...|.++...+.. +..+-.+..-+..+++++++.++|++....+.- +++|.+-++. -+.-..+...+
T Consensus 187 LW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa~~~~v~p~~A~i 264 (407)
T 3b9w_A 187 LWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVAIGSVCNIVGPVGAFV 264 (407)
T ss_dssp HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTTTTTTSCHHHHHH
T ss_pred HHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhheeccCCCCCCHHHHHH
Confidence 345666677764332211 112223344445555666555667776554332 3444433332 23322344556
Q ss_pred HHHHHHHHHHH
Q 029720 163 AALFGCLATST 173 (189)
Q Consensus 163 ~~l~s~~~~a~ 173 (189)
.++++.+..-+
T Consensus 265 IG~iaG~i~~~ 275 (407)
T 3b9w_A 265 IGLLGGAISVV 275 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666544433
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=8.87 E-value=2.5e+02 Score=14.30 Aligned_cols=8 Identities=25% Similarity=-0.072 Sum_probs=3.1
Q ss_pred Cccccchh
Q 029720 1 MEASLCTW 8 (189)
Q Consensus 1 ~~~~~~~~ 8 (189)
||.+++..
T Consensus 1 ~E~~l~GT 8 (34)
T 3s8f_C 1 MEEKPKGA 8 (34)
T ss_dssp ---CCHHH
T ss_pred CCCCccce
Confidence 67777653
No 7
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=8.31 E-value=1.5e+02 Score=17.48 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhccC
Q 029720 170 ATSTKTILAESLLHSY 185 (189)
Q Consensus 170 ~~a~~~v~~~~l~~~~ 185 (189)
-|+.|..+.++++++|
T Consensus 21 kwgmyiafgekllksy 36 (82)
T 3fbl_A 21 KWGMYIAFGEKLLKSY 36 (82)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4677777777777654
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.55 E-value=3.3e+02 Score=13.73 Aligned_cols=17 Identities=29% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcccCh
Q 029720 117 ATTVVLQWLVWRKYFDW 133 (189)
Q Consensus 117 i~~~il~~~~~~e~~s~ 133 (189)
+.-+++..++.++|+..
T Consensus 14 iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 14 IYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44455666667776654
No 9
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=4.29 E-value=2.8e+02 Score=13.48 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=7.9
Q ss_pred HhhcccChhHHHH
Q 029720 126 VWRKYFDWRIWAS 138 (189)
Q Consensus 126 ~~~e~~s~~~~~~ 138 (189)
++.+++|.++++.
T Consensus 9 iL~rrpSYrkIln 21 (28)
T 1kdx_B 9 ILSRRPSYRKILN 21 (28)
T ss_dssp HHTTSTHHHHHHH
T ss_pred hhhcCchHHHHHH
Confidence 4566677766653
No 10
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=3.98 E-value=1.3e+03 Score=19.68 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029720 158 MFGFCAALFGCLATSTKTILAESLL 182 (189)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~v~~~~l~ 182 (189)
....+|.+.+.+..+.|.-..-..+
T Consensus 591 ~~~~~w~~~~lil~~~Yta~L~s~L 615 (823)
T 3kg2_A 591 IVGGVWWFFTLIIISSYTANLAAFL 615 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777765444333
Done!