Query 029720
Match_columns 189
No_of_seqs 113 out of 1098
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 03:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 19.2 42 0.0031 14.7 2.8 18 159-176 3-20 (27)
2 d1uptb_ a.193.1.1 (B:) Golgi a 8.2 64 0.0046 17.3 1.0 20 120-139 11-30 (58)
3 d2iu5a1 a.4.1.9 (A:1-71) Trans 5.7 1.9E+02 0.014 15.1 2.4 12 1-12 1-12 (71)
4 d2yvxa3 f.57.1.1 (A:276-448) M 5.2 4.1E+02 0.03 17.0 6.5 16 174-189 129-144 (173)
5 d2c0sa1 a.30.7.1 (A:1-57) Hypo 3.9 3.1E+02 0.022 14.3 2.1 19 35-53 21-39 (57)
6 d2h5na1 a.287.1.2 (A:1-132) Hy 3.8 4.2E+02 0.031 15.3 3.4 35 132-170 82-116 (132)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.5 6.5E+02 0.047 17.0 7.6 51 82-136 5-55 (248)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 2.6 3.3E+02 0.024 12.5 1.2 10 165-174 18-27 (34)
9 d1znfa_ g.37.1.1 (A:) XFIN, th 2.2 3.2E+02 0.023 11.4 0.8 8 2-9 7-14 (26)
10 d2axth1 f.23.33.1 (H:2-65) Pho 1.9 6.3E+02 0.046 13.3 2.5 23 158-180 29-51 (64)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.24 E-value=42 Score=14.69 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029720 159 FGFCAALFGCLATSTKTI 176 (189)
Q Consensus 159 ~G~~~~l~s~~~~a~~~v 176 (189)
.|.+..-++.++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777788887753
No 2
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=64 Score=17.28 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHhhcccChhHHHHH
Q 029720 120 VVLQWLVWRKYFDWRIWASL 139 (189)
Q Consensus 120 ~il~~~~~~e~~s~~~~~~~ 139 (189)
+++.|...+|.-+..++++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 46777788888777777665
No 3
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=5.68 E-value=1.9e+02 Score=15.12 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=8.7
Q ss_pred CccccchhhhHH
Q 029720 1 MEASLCTWSVFR 12 (189)
Q Consensus 1 ~~~~~~~~~~~~ 12 (189)
|||+..+|....
T Consensus 1 M~r~~~t~~~I~ 12 (71)
T d2iu5a1 1 MEKSIITQKIIA 12 (71)
T ss_dssp CCTTSHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 788888877643
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.16 E-value=4.1e+02 Score=17.03 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=7.3
Q ss_pred HHHHHHHhhccCCCCC
Q 029720 174 KTILAESLLHSYKFDR 189 (189)
Q Consensus 174 ~~v~~~~l~~~~~~~~ 189 (189)
-....=-+++|.+.||
T Consensus 129 ~G~~lPlll~klg~DP 144 (173)
T d2yvxa3 129 VGAMLPFLLRRLGVDP 144 (173)
T ss_dssp HHHHHHHHHHHTSCCG
T ss_pred HHHHHHHHHHHhCCCh
Confidence 3333334445555555
No 5
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=3.85 E-value=3.1e+02 Score=14.34 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=14.8
Q ss_pred hhcCCCCchhHHHHHHHHH
Q 029720 35 FQKLDFKFPLSVSCIHFIC 53 (189)
Q Consensus 35 ~~~~~f~~p~~l~~~r~~~ 53 (189)
.+.|||..+-++.+.|=+=
T Consensus 21 v~~YGf~h~kvl~~SQELD 39 (57)
T d2c0sa1 21 VEKYGFTHHKVISFSQELD 39 (57)
T ss_dssp HHHTCTTSHHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHH
Confidence 3447898899999998764
No 6
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.75 E-value=4.2e+02 Score=15.27 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHH
Q 029720 132 DWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLA 170 (189)
Q Consensus 132 s~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 170 (189)
.++++++ .-.|+++++.+|.+.+-. .+|-+++.+|
T Consensus 82 erkkyva---sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 82 ERKKYVA---SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHH---HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHHHHHH---HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 3455544 456888888888766533 4677777765
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.49 E-value=6.5e+02 Score=17.00 Aligned_cols=51 Identities=6% Similarity=-0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHhHHHHHhhhhHHHHHHHHHHHhhcccChhHH
Q 029720 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIW 136 (189)
Q Consensus 82 ~l~~~~~~~~~~~~~~~sl~~~~v~~~~il~~~~pi~~~il~~~~~~e~~s~~~~ 136 (189)
++.++++.++..+.....+..-+..... ..-+.+++..++++.+|.-..++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~ky 55 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRY 55 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceeh
Confidence 4557777766666665555555554433 33455666677777666544444
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.59 E-value=3.3e+02 Score=12.48 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 029720 165 LFGCLATSTK 174 (189)
Q Consensus 165 l~s~~~~a~~ 174 (189)
+++.++|+.|
T Consensus 18 ~vG~FfYGsY 27 (34)
T d2axtj1 18 IVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHTT
T ss_pred heeeeeeeee
Confidence 3444444433
No 9
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=2.22 E-value=3.2e+02 Score=11.38 Aligned_cols=8 Identities=38% Similarity=0.244 Sum_probs=3.8
Q ss_pred ccccchhh
Q 029720 2 EASLCTWS 9 (189)
Q Consensus 2 ~~~~~~~~ 9 (189)
|||.+.++
T Consensus 7 ersfveks 14 (26)
T d1znfa_ 7 ERSFVEKS 14 (26)
T ss_dssp CCBCSSHH
T ss_pred HHHHHHHH
Confidence 45554444
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.92 E-value=6.3e+02 Score=13.26 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029720 158 MFGFCAALFGCLATSTKTILAES 180 (189)
Q Consensus 158 ~~G~~~~l~s~~~~a~~~v~~~~ 180 (189)
..|+++++++.+..-+--+|...
T Consensus 29 lMgv~m~Lf~vfl~iiLeiYNss 51 (64)
T d2axth1 29 LMAVFMGLFLVFLLIILEIYNST 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45677766666655554444443
Done!