BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029721
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 276 bits (706), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 131/178 (73%), Positives = 156/178 (87%), Gaps = 1/178 (0%)
Query: 8 GINGGAES-EHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC 66
+ GG E+ +++R HH H ++QC+S L KHI+AP+HLVWSLVRRFDQPQKYKPFVSRC
Sbjct: 28 AMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRC 87
Query: 67 VAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLH 126
G+ EIGSLREV+VKSGLPATTSTERLELLDDEEH+L ++IIGGDHRLKNYSSI+++H
Sbjct: 88 TVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKNYSSILTVH 147
Query: 127 SEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHALLDRTE 184
EII+GR GT+V+ESFVVDVP+GNTKDETCYFVEALI+CNLKSLAD+SER A D T+
Sbjct: 148 PEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ 205
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 124/172 (72%), Positives = 149/172 (86%), Gaps = 1/172 (0%)
Query: 6 NGGINGGAESEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSR 65
NG ESE+I++HH H++ + QCSS L KHI+AP+HLVWS+VRRFD+PQKYKPF+SR
Sbjct: 2 NGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISR 61
Query: 66 CVAQGN-LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIIS 124
CV QG LE+GS+REVD+KSGLPAT STE LE+LDD EH+L +RI+GGDHRLKNYSS IS
Sbjct: 62 CVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTIS 121
Query: 125 LHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176
LHSE IDG+ GTL +ESFVVDVPEGNTK+ETC+FVEALI+CNL SLAD++ER
Sbjct: 122 LHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTER 173
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 124/172 (72%), Positives = 149/172 (86%), Gaps = 1/172 (0%)
Query: 6 NGGINGGAESEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSR 65
NG ESE+I++HH H++ + QCSS L KHI+AP+HLVWS+VRRFD+PQKYKPF+SR
Sbjct: 2 NGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISR 61
Query: 66 CVAQGN-LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIIS 124
CV QG LE+GS+REVD+KSGLPAT STE LE+LDD EH+L +RI+GGDHRLKNYSS IS
Sbjct: 62 CVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTIS 121
Query: 125 LHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176
LHSE IDG+ GTL +ESFVVDVPEGNTK+ETC+FVEALI+CNL SLAD++ER
Sbjct: 122 LHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTER 173
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 266 bits (681), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 123/172 (71%), Positives = 148/172 (86%), Gaps = 1/172 (0%)
Query: 6 NGGINGGAESEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSR 65
NG ESE+I++HH H++ + QCSS L KHI+AP+HLVWS+VRRFD+PQKYKPF+SR
Sbjct: 2 NGDETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISR 61
Query: 66 CVAQGN-LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIIS 124
CV QG LE+GS+REVD+KSGLPAT STE LE+LDD EH+L +RI+GGDHRLKNYSS IS
Sbjct: 62 CVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTIS 121
Query: 125 LHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176
LHSE IDG+ GTL +ESFVVDVPEGNTK+ETC+FVEALI+ NL SLAD++ER
Sbjct: 122 LHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTER 173
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 118/163 (72%), Gaps = 5/163 (3%)
Query: 16 EHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGN-LE 73
EH+ HH HDV QC S + + I AP VW+LVRRFD P+ YK F+ +C + QG+ L
Sbjct: 63 EHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLH 122
Query: 74 IGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGR 133
+G LREV V SGLPA +STERLE+LD+E HV+ ++GGDHRLKNY S+ +LH+ +
Sbjct: 123 VGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASDDE-- 180
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176
GT+V+ES++VDVP GNT++ET FV+ +++CNL+SLA + R
Sbjct: 181 -GTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLARSTNR 222
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 2/163 (1%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE--IG 75
I H + + CSS+ + I AP LVWS+VRRFD+PQ YKPF+ C + N E +G
Sbjct: 19 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEMRVG 78
Query: 76 SLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGRMG 135
R+V V SGLPA TSTERL++LDDE V IIGG+HRL NY S+ ++H + R+
Sbjct: 79 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 138
Query: 136 TLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178
T+VLES+VVD+PEGN++D+T F + ++K NL+ LA ++E A
Sbjct: 139 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 25 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 84
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL RI+GG+HRLKNY S+ S++ E ++ G+
Sbjct: 85 VREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVN-EFLNQDSGK 143
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 181
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE--IG 75
I H + + CSS+ + I AP LVWS+VRRFD+PQ YK F+ C + N E +G
Sbjct: 19 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 78
Query: 76 SLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGRMG 135
R+V V SGLPA TSTERL++LDDE V IIGG+HRL NY S+ ++H + R+
Sbjct: 79 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 138
Query: 136 TLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178
T+VLES+VVD+PEGN++D+T F + ++K NL+ LA ++E A
Sbjct: 139 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 22 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 81
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 82 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 140
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 141 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 178
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 25 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 84
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 85 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 143
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 181
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 71 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 10 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 69
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 70 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 128
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 129 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 166
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE--IG 75
I H + + CSS+ + I AP LVWS+VRRFD+PQ YK F+ C + N E +G
Sbjct: 37 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 96
Query: 76 SLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGRMG 135
R+V V SGLPA TSTERL++LDDE V IIGG+HRL NY S+ ++H + R+
Sbjct: 97 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 156
Query: 136 TLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178
T+VLES+VVD+PEGN++D+T F + ++K NL+ LA ++E A
Sbjct: 157 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 199
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLPA+TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 71 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VAQGNLEIGS 76
I+ +H + C+S++ + I AP +VW L+RRFD P++YK FV RC + G+ ++GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 77 LREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIID---GR 133
+REV V SGLP +TSTERLE +DD+ VL R++GG+HRLKNY S+ S++ E ++ G+
Sbjct: 71 VREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 134 MGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171
+ T+VLES+ VD+PEGNT+++T FV+ ++K NL+ L
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE--IG 75
I H + + CSS+ + I AP LVWS+VRRFD+PQ YK F+ C + N E +G
Sbjct: 20 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 79
Query: 76 SLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGRMG 135
R+V V SGL A TSTERL++LDDE V IIGG+HRL NY S+ ++H + R+
Sbjct: 80 CTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 139
Query: 136 TLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178
T+VLES+VVD+PEGN++D+T F + ++K NL+ LA ++E A
Sbjct: 140 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 182
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 11/168 (6%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGN------ 71
IR HH + + C+S++ + AP H +W VR F P KYK F+ C + N
Sbjct: 14 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 73
Query: 72 LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEII- 130
+++G++REV V SGLPA+TS E LE+LD+E+ +L R++GG+HRL NY S+ S++ ++
Sbjct: 74 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 133
Query: 131 ----DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174
R+ ++VLES++VD+P+GNT+++T FV+ ++K NL++LA IS
Sbjct: 134 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 181
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 11/168 (6%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGN------ 71
IR HH + + C+S++ + AP H +W VR F P KYK F+ C + N
Sbjct: 17 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 76
Query: 72 LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEII- 130
+++G++REV V SGLPA+TS E LE+LD+E+ +L R++GG+HRL NY S+ S++ ++
Sbjct: 77 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 136
Query: 131 ----DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174
R+ ++VLES++VD+P+GNT+++T FV+ ++K NL++LA IS
Sbjct: 137 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 184
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 11/168 (6%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGN------ 71
IR HH + + C+S++ + AP H +W VR F P KYK F+ C + N
Sbjct: 16 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 75
Query: 72 LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEII- 130
+++G++REV V SGLPA+TS E LE+LD+E+ +L R++GG+HRL NY S+ S++ ++
Sbjct: 76 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 135
Query: 131 ----DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174
R+ ++VLES++VD+P+GNT+++T FV+ ++K NL++LA IS
Sbjct: 136 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 183
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 11/168 (6%)
Query: 18 IRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGN------ 71
IR HH + + C+S++ + AP H +W VR F P KYK F+ C + N
Sbjct: 37 IRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKE 96
Query: 72 LEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLHSEII- 130
+++G++REV V SGLPA+TS E LE+LD+E+ +L R++GG+HRL NY S+ S++ ++
Sbjct: 97 IKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVL 156
Query: 131 ----DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174
R+ ++VLES++VD+P+GNT+++T FV+ ++K NL++LA IS
Sbjct: 157 EKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 204
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 15 SEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE- 73
S+ I H + + + +CSS+L + I AP VWS+VRRFD+PQ YK F+ C + E
Sbjct: 38 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 97
Query: 74 -IGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLH---SEI 129
+G R+V+V SGLPA TS ERL+LLDD+ V I GG+HRL+NY S+ ++H E
Sbjct: 98 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 157
Query: 130 IDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175
+ R+ T+VLES+VVDVPEGN++++T F + +I+ NL+ LA I+E
Sbjct: 158 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 203
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 15 SEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE- 73
S+ I H + + + +CSS+L + I AP VWS+VRRFD+PQ YK F+ C + E
Sbjct: 8 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 67
Query: 74 -IGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLH---SEI 129
+G R+V+V SGLPA TS ERL+LLDD+ V I GG+HRL+NY S+ ++H E
Sbjct: 68 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 127
Query: 130 IDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175
+ R+ T+VLES+VVDVPEGN++++T F + +I+ NL+ LA I+E
Sbjct: 128 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 173
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 15 SEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE- 73
S+ I H + + + +CSS+L + I AP VWS+VRRFD+PQ YK F+ C + E
Sbjct: 17 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 76
Query: 74 -IGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLH---SEI 129
+G R+V+V SGLPA TS ERL+LLDD+ V I GG+HRL+NY S+ ++H E
Sbjct: 77 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 136
Query: 130 IDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175
+ R+ T+VLES+VVDVPEGN++++T F + +I+ NL+ LA I+E
Sbjct: 137 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 182
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 15 SEHIRRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLE- 73
S+ I H + + + +CSS+L + I AP VWS+VRRFD+PQ YK F+ C + E
Sbjct: 22 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 81
Query: 74 -IGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSIISLH---SEI 129
+G R+V+V SGLPA TS ERL+LLDD+ V I GG+HRL+NY S+ ++H E
Sbjct: 82 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 141
Query: 130 IDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175
+ R+ T+VLES+VVDVPEGN++++T F + +I+ NL+ LA I+E
Sbjct: 142 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITE 187
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 46 VWSLVRRFDQPQKYKPFV-SRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHV 104
VW L+ F+ + P++ S + +G G +R + G T ERLE+ +D+E
Sbjct: 17 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---ETIIERLEVFNDKERY 69
Query: 105 LRVRIIGGDHRLKNYSSIISLHSEIIDG-RMGTLVLESFVVDVPEGNTKDETCYFVEALI 163
I + NY S I ++ +G T ++E P + +E V +
Sbjct: 70 YTYSIXNAPFPVTNYLSTI----QVKEGTESNTSLVEWSGTFTPVAVSDEEAINLVHGIY 125
Query: 164 KCNLKSLADISERHALLD 181
LK+L +HA LD
Sbjct: 126 SDGLKAL-----QHAFLD 138
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 69 QGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNYSSI------ 122
QG L + +++ V ++S T RL+ L + +IGG L N SI
Sbjct: 132 QG-LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAK 190
Query: 123 -ISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETC 156
+ L E+ G +GT + +P N K E C
Sbjct: 191 PVILPPEVAIGALGT------IKALPRFNEKGEVC 219
>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 285
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 SNGGINGGAESEHI-RRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFV 63
S+ ++ +++ I R+ HI + +H +K+ AP H++ +V + P YK F
Sbjct: 224 SDASLSEDEKAQFINRKEHISSLLEHVLFPCIKRRFLAPRHILKDVVEIANLPDLYKVF- 282
Query: 64 SRC 66
RC
Sbjct: 283 ERC 285
>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 288
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 SNGGINGGAESEHI-RRHHIHDVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFV 63
S+ ++ +++ I R+ HI + +H +K+ AP H++ +V + P YK F
Sbjct: 227 SDASLSEDEKAQFINRKEHISSLLEHVLFPCIKRRFLAPRHILKDVVEIANLPDLYKVF- 285
Query: 64 SRC 66
RC
Sbjct: 286 ERC 288
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 46 VWSLVRRFDQPQKYKPFV-SRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHV 104
VW L+ F+ + P++ S + +G G +R + G T ERLE+ +D+E
Sbjct: 19 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---DTIIERLEVFNDKERY 71
Query: 105 LRVRIIGGDHRLKNYSSIISL 125
I + NY S I +
Sbjct: 72 YTYSIXNAPFPVTNYLSTIQV 92
>pdb|2P9X|A Chain A, Crystal Structure Of Ph0832 From Pyrococcus Horikoshii
Ot3
pdb|2P9X|B Chain B, Crystal Structure Of Ph0832 From Pyrococcus Horikoshii
Ot3
pdb|2P9X|C Chain C, Crystal Structure Of Ph0832 From Pyrococcus Horikoshii
Ot3
pdb|2P9X|D Chain D, Crystal Structure Of Ph0832 From Pyrococcus Horikoshii
Ot3
Length = 99
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 33 SVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ 69
+VL+ H+RA ++ L +D PQK+K VS+ +
Sbjct: 25 AVLEAHLRATLNSGIELA--YDDPQKFKEAVSKLFGE 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,856,649
Number of Sequences: 62578
Number of extensions: 232306
Number of successful extensions: 503
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 33
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)