Query 029721
Match_columns 189
No_of_seqs 139 out of 969
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 4.8E-25 1E-29 171.0 19.5 115 29-145 1-121 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.8 3.5E-19 7.6E-24 139.0 16.8 115 28-144 3-123 (151)
3 PF10604 Polyketide_cyc2: Poly 99.8 6.6E-18 1.4E-22 126.2 20.1 137 30-175 3-139 (139)
4 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2.4E-18 5.1E-23 128.6 17.6 138 30-175 2-140 (140)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 1.1E-15 2.5E-20 115.9 16.8 135 31-176 1-144 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.7 2.2E-15 4.7E-20 114.1 15.6 139 32-176 2-142 (142)
7 cd08865 SRPBCC_10 Ligand-bindi 99.7 2.8E-15 6.1E-20 111.7 15.8 136 32-176 2-140 (140)
8 cd08862 SRPBCC_Smu440-like Lig 99.7 6.1E-15 1.3E-19 110.5 17.5 135 30-175 2-137 (138)
9 cd07822 SRPBCC_4 Ligand-bindin 99.6 5.9E-14 1.3E-18 104.8 16.9 139 31-175 2-141 (141)
10 cd07819 SRPBCC_2 Ligand-bindin 99.6 2.7E-13 5.9E-18 101.5 17.7 135 29-173 2-139 (140)
11 cd07818 SRPBCC_1 Ligand-bindin 99.6 1.2E-13 2.5E-18 105.6 15.6 140 30-176 3-150 (150)
12 cd07817 SRPBCC_8 Ligand-bindin 99.5 2.5E-13 5.4E-18 101.8 14.3 136 31-175 2-138 (139)
13 cd08860 TcmN_ARO-CYC_like N-te 99.5 4.1E-13 9E-18 104.0 15.8 142 30-178 2-146 (146)
14 cd07813 COQ10p_like Coenzyme Q 99.5 2.9E-13 6.2E-18 102.5 13.7 134 32-176 2-137 (138)
15 cd07814 SRPBCC_CalC_Aha1-like 99.5 1.3E-12 2.9E-17 97.7 13.5 136 31-176 2-139 (139)
16 cd07824 SRPBCC_6 Ligand-bindin 99.4 6.7E-12 1.5E-16 96.2 15.5 134 32-173 4-145 (146)
17 cd05018 CoxG Carbon monoxide d 99.4 3.5E-12 7.5E-17 95.9 13.6 140 30-174 2-143 (144)
18 cd07825 SRPBCC_7 Ligand-bindin 99.4 4.1E-12 8.9E-17 96.3 13.2 138 31-175 2-144 (144)
19 cd07812 SRPBCC START/RHO_alpha 99.4 3.7E-11 8E-16 87.1 15.4 132 33-172 3-139 (141)
20 cd07823 SRPBCC_5 Ligand-bindin 99.2 2.9E-10 6.2E-15 87.1 13.1 139 32-175 2-145 (146)
21 cd07820 SRPBCC_3 Ligand-bindin 99.2 6E-10 1.3E-14 84.5 14.0 104 32-142 2-110 (137)
22 PF03364 Polyketide_cyc: Polyk 99.2 1.3E-09 2.7E-14 81.3 13.7 126 39-171 1-130 (130)
23 PRK10724 hypothetical protein; 99.2 1.2E-09 2.7E-14 85.8 14.1 134 29-178 15-151 (158)
24 cd08899 SRPBCC_CalC_Aha1-like_ 99.1 1.6E-09 3.5E-14 84.3 11.9 128 30-178 12-139 (157)
25 cd08893 SRPBCC_CalC_Aha1-like_ 99.1 9.2E-09 2E-13 76.7 14.2 132 30-176 1-136 (136)
26 cd08894 SRPBCC_CalC_Aha1-like_ 99.0 1.1E-08 2.3E-13 77.8 12.9 133 34-176 3-139 (139)
27 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 2.5E-08 5.5E-13 75.2 14.0 136 30-176 2-145 (145)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.9 1.1E-07 2.3E-12 72.8 13.7 135 34-175 3-141 (142)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.9 1.8E-07 3.8E-12 71.3 14.6 132 34-176 3-143 (143)
30 cd08896 SRPBCC_CalC_Aha1-like_ 98.9 1.1E-07 2.4E-12 72.8 13.5 134 34-176 3-146 (146)
31 COG3427 Carbon monoxide dehydr 98.8 6E-08 1.3E-12 75.1 11.2 105 30-140 2-109 (146)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.8 1.9E-07 4E-12 70.4 13.3 125 35-176 4-133 (133)
33 cd08891 SRPBCC_CalC Ligand-bin 98.8 3.7E-07 7.9E-12 70.1 14.5 136 31-176 2-149 (149)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.8 8.9E-07 1.9E-11 67.7 16.0 130 34-175 3-145 (146)
35 PF08327 AHSA1: Activator of H 98.7 1E-06 2.2E-11 64.6 13.3 123 40-175 1-124 (124)
36 cd08901 SRPBCC_CalC_Aha1-like_ 98.7 8.1E-07 1.8E-11 67.3 12.9 130 31-177 2-133 (136)
37 COG5637 Predicted integral mem 98.6 1E-06 2.3E-11 70.1 12.9 146 25-182 66-216 (217)
38 cd08876 START_1 Uncharacterize 98.6 7.5E-06 1.6E-10 65.4 18.0 141 29-174 41-194 (195)
39 PF06240 COXG: Carbon monoxide 98.6 1.1E-06 2.4E-11 67.2 11.8 133 38-174 4-139 (140)
40 cd08892 SRPBCC_Aha1 Putative h 98.6 2.6E-06 5.7E-11 63.8 13.6 122 34-175 3-125 (126)
41 COG2867 Oligoketide cyclase/li 98.4 5.2E-06 1.1E-10 64.1 11.7 137 30-180 3-141 (146)
42 COG3832 Uncharacterized conser 98.3 3.8E-05 8.2E-10 59.5 13.2 137 33-175 10-148 (149)
43 PTZ00220 Activator of HSP-90 A 97.8 0.00032 6.9E-09 53.1 10.5 124 39-175 1-127 (132)
44 cd08905 START_STARD1-like Chol 97.2 0.031 6.6E-07 45.6 15.2 142 29-176 49-208 (209)
45 cd08874 START_STARD9-like C-te 97.2 0.047 1E-06 44.7 16.1 109 29-141 45-173 (205)
46 cd08906 START_STARD3-like Chol 97.1 0.093 2E-06 42.9 16.8 142 29-176 49-208 (209)
47 PF08982 DUF1857: Domain of un 96.9 0.043 9.4E-07 42.8 12.8 125 41-180 18-147 (149)
48 COG4276 Uncharacterized conser 96.8 0.16 3.5E-06 39.0 14.6 129 38-173 9-149 (153)
49 cd08871 START_STARD10-like Lip 96.7 0.27 5.9E-06 40.1 17.8 137 38-177 54-203 (222)
50 cd08877 START_2 Uncharacterize 96.5 0.15 3.4E-06 41.4 14.0 141 30-176 45-214 (215)
51 cd08869 START_RhoGAP C-termina 96.5 0.32 6.8E-06 39.2 15.5 134 32-175 47-195 (197)
52 cd08913 START_STARD14-like Lip 96.4 0.21 4.6E-06 41.9 14.4 101 38-140 88-206 (240)
53 cd08873 START_STARD14_15-like 96.3 0.51 1.1E-05 39.5 16.1 102 38-141 84-202 (235)
54 PF10698 DUF2505: Protein of u 96.1 0.41 9E-06 37.2 13.7 131 37-174 5-155 (159)
55 cd08903 START_STARD5-like Lipi 96.0 0.64 1.4E-05 37.8 16.4 136 37-176 52-207 (208)
56 cd08908 START_STARD12-like C-t 95.9 0.56 1.2E-05 38.4 14.3 138 29-175 52-202 (204)
57 cd08911 START_STARD7-like Lipi 95.8 0.78 1.7E-05 37.2 16.7 135 38-176 52-206 (207)
58 cd08868 START_STARD1_3_like Ch 95.7 0.89 1.9E-05 36.7 15.9 136 38-176 55-207 (208)
59 cd00177 START Lipid-binding ST 95.7 0.74 1.6E-05 35.6 17.5 111 28-140 38-161 (193)
60 cd08870 START_STARD2_7-like Li 95.3 1.3 2.7E-05 36.0 17.7 134 38-175 57-207 (209)
61 KOG3177 Oligoketide cyclase/li 95.0 0.43 9.3E-06 39.2 10.5 100 37-143 74-180 (227)
62 cd08910 START_STARD2-like Lipi 93.9 2.8 6.1E-05 34.0 14.3 138 30-175 50-205 (207)
63 cd08914 START_STARD15-like Lip 93.9 3.3 7.1E-05 34.7 13.8 107 30-142 79-204 (236)
64 cd08867 START_STARD4_5_6-like 93.7 3.1 6.7E-05 33.5 16.5 140 30-174 47-205 (206)
65 smart00234 START in StAR and p 93.6 3 6.5E-05 33.0 16.3 137 38-178 52-204 (206)
66 cd08904 START_STARD6-like Lipi 93.5 3.5 7.6E-05 33.6 14.0 132 38-174 53-203 (204)
67 cd08863 SRPBCC_DUF1857 DUF1857 91.9 4.8 0.0001 31.1 14.3 64 41-111 17-82 (141)
68 PF11687 DUF3284: Domain of un 86.8 11 0.00023 28.0 11.6 94 35-141 3-100 (120)
69 PF01852 START: START domain; 85.3 16 0.00035 28.7 15.5 140 29-178 46-204 (206)
70 KOG2936 Uncharacterized conser 80.6 15 0.00033 31.8 8.9 115 31-163 173-289 (301)
71 cd08909 START_STARD13-like C-t 68.9 63 0.0014 26.4 15.3 139 29-175 52-203 (205)
72 cd08902 START_STARD4-like Lipi 65.7 74 0.0016 26.1 15.2 132 38-174 54-201 (202)
73 cd08872 START_STARD11-like Cer 36.6 2.4E+02 0.0053 23.2 14.5 31 38-68 59-90 (235)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.94 E-value=4.8e-25 Score=171.03 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=100.9
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCC--CcccCccceEEEE-ecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeE
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQ--PQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVL 105 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~--~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~ 105 (189)
++++.++ +|+||+|+||++++||.+ ++.|+|.|++|++ +|++++|++|.+++.+|.+...++|||+++|+++|+|
T Consensus 1 ~~~~~e~--~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEV--ELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEE--EecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 3677788 999999999999999984 4689999999996 7888899999999987654457999999999999999
Q ss_pred EEEEEccCc---cceeEEEEEEEEeeeCCCceEEEEEEEEEec
Q 029721 106 RVRIIGGDH---RLKNYSSIISLHSEIIDGRMGTLVLESFVVD 145 (189)
Q Consensus 106 ~Y~i~~g~~---p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d 145 (189)
+|++++|++ ++++|.++++|.|.++++|.++|+..++..+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 999999987 5999999999999977889888888776543
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.83 E-value=3.5e-19 Score=139.01 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=97.2
Q ss_pred CceEEEEEeeeecCCHHHHHHHHhcCCC-CcccCc-cceEEEE-ecCCCCC-eEEEEEecCCCCcccEEEEEEEEeCCCC
Q 029721 28 DHQCSSVLKKHIRAPVHLVWSLVRRFDQ-PQKYKP-FVSRCVA-QGNLEIG-SLREVDVKSGLPATTSTERLELLDDEEH 103 (189)
Q Consensus 28 ~~~v~~sv~~~I~Ap~d~VW~vl~df~~-~~~W~P-~v~s~~~-eG~~~vG-~vR~~~~~~g~p~~~~~ErL~~~D~~~~ 103 (189)
.++++..+ ++++||+++|+++.+... +|+-.| .|+++++ +|++++| ++|.|+|..+.|...+|||++.+|++++
T Consensus 3 ~~~~~~E~--~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 3 VGKLEVEV--EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp EEEEEEEE--EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred cEEEEEEE--EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 35677778 999999999999997433 577777 5789986 8998777 9999999987777789999999999999
Q ss_pred eEEEEEEccCc--cceeEEEEEEEEeeeCCCceEEEEEEEEEe
Q 029721 104 VLRVRIIGGDH--RLKNYSSIISLHSEIIDGRMGTLVLESFVV 144 (189)
Q Consensus 104 ~~~Y~i~~g~~--p~~~y~ati~v~p~~~~gt~vt~~~~~~~~ 144 (189)
+++|++++|++ .+..|..++++.|.++++|.++|++.|+..
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~ 123 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKK 123 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEES
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEec
Confidence 99999999986 678999999999998888999999988753
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.82 E-value=6.6e-18 Score=126.22 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=109.2
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
+++.++ +|+|||++||++++|+.+++.|.|.+.++++.+.+++|..+.+.. .|. ..++++++++||+.+.+.|++
T Consensus 3 ~~~~~~--~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 3 KVEVSI--EVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV-AGR--GTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEE--EESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE-CSC--SEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEE--EECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe-ccc--cceeEEEEEecCCCcEEEEEE
Confidence 456666 999999999999999999999999999998754333566666665 442 369999999999779999999
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
. ..|+.++..+++|.|.+ +||.++|+..+.. .++.......+..++.+.++..|++|++.+|
T Consensus 78 ~--~~~~~~~~~~~~~~~~~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 V--PSGFTNGTGRWRFEPVG-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp E--SSSSCEEEEEEEEEEET-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--ecceeEEEEEEEEEEcC-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6 55777899999999999 5698887776554 2233434667789999999999999999987
No 4
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.82 E-value=2.4e-18 Score=128.60 Aligned_cols=138 Identities=32% Similarity=0.472 Sum_probs=114.7
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEe-cCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ-GNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVR 108 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~e-G~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~ 108 (189)
+++.++ +|+||+++||+++.|+.+++.|.|.+.++++. +..++|+.+.+.+..| ..++++++++||.++.+.|+
T Consensus 2 ~i~~~~--~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSV--TIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEE--EECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 466677 99999999999999999999999999988874 3335899999888765 36899999999976899999
Q ss_pred EEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 109 IIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 109 i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
+.+++.++.++.++++|.|.++++|.++|+..+. ++.+.....+..++...+..+|++|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 77 IVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFD---PPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred ecCCCCCcccceEEEEEEECCCCccEEEEEEEEe---cCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988778888999999999987789887777643 232244567788999999999999999875
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.71 E-value=1.1e-15 Score=115.87 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=99.6
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeE-------EEEEecCCCCcccEEEEEEEEeCCC
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSL-------REVDVKSGLPATTSTERLELLDDEE 102 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~v-------R~~~~~~g~p~~~~~ErL~~~D~~~ 102 (189)
|+.++ .|+|||++||+++.|++++++|+|.+.+|++ ++.+ .+.. +.+.. ..+ ..+..++.+.++..
T Consensus 1 ~~~~~--~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~ 74 (144)
T cd08866 1 VVARV--RVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFF--KFE-ARVVLELREREEFP 74 (144)
T ss_pred CeEEE--EECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEee--eee-EEEEEEEEEecCCC
Confidence 35667 9999999999999999999999999999986 4322 1211 11110 000 13455677777656
Q ss_pred CeEEEEEEccCccceeEEEEEEEEeeeC-CCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 103 HVLRVRIIGGDHRLKNYSSIISLHSEII-DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 103 ~~~~Y~i~~g~~p~~~y~ati~v~p~~~-~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+.++|++++| ++..|.++++|.|.++ ++|+++|.++... ..+.....+..++...+...|++|++.+|+
T Consensus 75 ~~i~~~~~~g--~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~---~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 75 RELDFEMVEG--DFKRFEGSWRLEPLADGGGTLLTYEVEVKP---DFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred ceEEEEEcCC--chhceEEEEEEEECCCCCeEEEEEEEEEEe---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999887 4778899999999987 5787777765543 334445677888999999999999999874
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.69 E-value=2.2e-15 Score=114.07 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=103.5
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEE-EecCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV-AQGNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~-~eG~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
+.++ +|+||+++||+++.||.+++.|+|. .+++ +++.+....++.+... .|.. .-.+.+..+|++.+++.|..
T Consensus 2 ~~s~--~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 2 EHSV--TVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV--HTWTSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred eEEE--EEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE--EEEEEEEEEcCCCCEEEEEE
Confidence 5677 9999999999999999999999997 4444 4432211134544443 3321 22244557888778999999
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+++..++..+.+.++|.|.++++|.|+|...+... .+..+....+.+++...+...|++||+.+|.
T Consensus 77 ~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 77 EEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLG-IDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred eeCCCChhhheeEEEEEECCCCcEEEEEEEEEEEC-CCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 87666788899999999998778988888876643 2333667788899999999999999999884
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=2.8e-15 Score=111.68 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=102.2
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEe--cCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEEEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ--GNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLRVR 108 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~e--G~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~Y~ 108 (189)
+.++ .|+||+|+||++++||.+++.|.|.+.+++.. +..++|+...+.+. .|.+ ..++++++++||. +.+.|.
T Consensus 2 ~~~~--~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~v~~~~p~-~~~~~~ 77 (140)
T cd08865 2 EESI--VIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRR-IELTYEITEYEPG-RRVVFR 77 (140)
T ss_pred ceEE--EEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCce-EEEEEEEEEecCC-cEEEEE
Confidence 4556 99999999999999999999999999888763 34568888777654 3322 3578999999985 789999
Q ss_pred EEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 109 IIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 109 i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
...++ + .+..++++.|.+ ++|.++|+..+.. ..+.......+...+...+...|++|++.+|.
T Consensus 78 ~~~~~--~-~~~~~~~~~~~~-~~t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 78 GSSGP--F-PYEDTYTFEPVG-GGTRVRYTAELEP-GGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred ecCCC--c-ceEEEEEEEEcC-CceEEEEEEEEcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 87653 3 467899999987 5787777765442 21222334556777888889999999998874
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.68 E-value=6.1e-15 Score=110.49 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=103.0
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCC-CCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNL-EIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVR 108 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~-~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~ 108 (189)
+++.++ +|+||+++||++++|+.+++.|+|.+.++++.++. ++|+...++...+ ..+..++++++|. ++|+|+
T Consensus 2 ~~~~~~--~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~~ 75 (138)
T cd08862 2 KFEATI--VIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTWT 75 (138)
T ss_pred EEEEEE--EEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEEE
Confidence 577888 99999999999999999999999999999876544 6888777765433 3678899999986 678887
Q ss_pred EEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 109 IIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 109 i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
... +...+..+++|.+.++++|+++++..+. .++..+....+...++..++..|++||+.+|
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~t~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 76 GPA---PGISAVHRHEFEAKPDGGVRVTTSESLS--GPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred ecC---CCEEEEEEEEEEEcCCCcEEEEEEEEee--cchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 643 2335567899999876688666554322 2222223466788899999999999999887
No 9
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=5.9e-14 Score=104.77 Aligned_cols=139 Identities=17% Similarity=0.070 Sum_probs=95.7
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCC-CCcccEEEEEEEEeCCCCeEEEEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSG-LPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g-~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
++.++ +|+||+++||+++.|+.+++.|+|.+..++... ..+|+...+.+..+ .....+.++++++||. +++.|+.
T Consensus 2 v~~~~--~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~~ 77 (141)
T cd07822 2 ISTEI--EINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWRG 77 (141)
T ss_pred eEEEE--EecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEEe
Confidence 56677 999999999999999999999999887665321 45788877766432 1224678899999995 7899998
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
..++.+...+..++.|.|.++++|++++...+. ..........+...+...++..++.|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFS--GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEE--EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 776554445667899999865788665543222 1122222334455566666666666666654
No 10
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=2.7e-13 Score=101.54 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=90.0
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ec-CCCCCeEEEEEecCCCCcccEEEEEEEEeCC-CCeE
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QG-NLEIGSLREVDVKSGLPATTSTERLELLDDE-EHVL 105 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG-~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~-~~~~ 105 (189)
.+++.++ +|+||+++||++|.|+.+++.|+|.+.+|++ ++ +++.+....+.+..+. ...+-+.+++.. .+.+
T Consensus 2 ~~v~~s~--~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i 76 (140)
T cd07819 2 IKVSREF--EIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSV 76 (140)
T ss_pred ceEEEEE--EEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcE
Confidence 4688888 9999999999999999999999999999986 43 3222233334443221 112222333322 4779
Q ss_pred EEEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029721 106 RVRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADI 173 (189)
Q Consensus 106 ~Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~ 173 (189)
+|+..++. ++..+.++++|.|.++ +|.++|..++.. ..+ .....+..+........+++|++.
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~-~t~vt~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEGE-GNRSQEGSYTLTPKGD-GTRVTFDLTVEL-TVP--LPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEeccc-ceeEEEEEEEEEECCC-CEEEEEEEEEEe-cCC--CCHHHHHHhhhHHHHHHHHhHhhh
Confidence 99998764 5778889999999985 788888776553 212 233444555555566666666654
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.58 E-value=1.2e-13 Score=105.63 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=100.0
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEE---E---ecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCC
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV---A---QGNLEIGSLREVDVKSGLPATTSTERLELLDDEEH 103 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~---~---eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~ 103 (189)
+++.++ +|+||+++||+++.|+.+++.|+|.+..++ . .+..++|+...+....+. .....+++++++. +
T Consensus 3 ~~~~s~--~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p~-~ 77 (150)
T cd07818 3 RVERSI--VINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVPN-E 77 (150)
T ss_pred EEEEEE--EEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCCC-c
Confidence 466777 999999999999999999999999765432 1 123468888777664421 1346678889885 7
Q ss_pred eEEEEEEccCccc-eeEEEEEEEEeeeCCCceEEEEEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 104 VLRVRIIGGDHRL-KNYSSIISLHSEIIDGRMGTLVLESFVVDV-PEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 104 ~~~Y~i~~g~~p~-~~y~ati~v~p~~~~gt~vt~~~~~~~~d~-p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
++.|++..+. |+ ..+..+++|.|.+ +||+++|+..+..... +.......+..+++..+..+|++||+.+|+
T Consensus 78 ~i~~~~~~~~-~~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 78 RIEYELRFIK-PFEATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEEecC-CccccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 8999997532 33 3677899999995 6898887765432101 111233556777888889999999999885
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=2.5e-13 Score=101.82 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=96.9
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRII 110 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~ 110 (189)
|+.++ +|+||+++||+++.|+.+++.|.|.+.++++.+. .+....+....|.. ..+..+++++++. +.+.|...
T Consensus 2 v~~~i--~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~~-~~i~~~~~ 75 (139)
T cd07817 2 VEKSI--TVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVPN-ERIAWRSV 75 (139)
T ss_pred eeEEE--EeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCCC-CEEEEEEC
Confidence 56778 9999999999999999999999999999886432 22333343433432 3466677777785 56999987
Q ss_pred ccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 111 GGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDV-PEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 111 ~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~-p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.|.+ .+.+++.+.|.++++|.+++...+..... +..+....+..+++..++..|++||+.+|
T Consensus 76 ~~~~---~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD---PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC---CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 6643 56788999998766887777765542111 11222355677788888999999999887
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.55 E-value=4.1e-13 Score=104.01 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=101.3
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e-cCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q-GNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLR 106 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e-G~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~ 106 (189)
+.+.+| +|+|||++||+++.|+.++|.|.|.+.++++ + |+.++|..-.+... +|.+..+..|+ .+|+..+++.
T Consensus 2 ~~~~si--~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSI--VIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVR 77 (146)
T ss_pred cceeEE--EEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEE
Confidence 467788 9999999999999999999999999999986 4 44445533222232 34322222222 3677777777
Q ss_pred EEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029721 107 VRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178 (189)
Q Consensus 107 Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~~ 178 (189)
++ -....|+..-.+.++++|.+ +||+|++...+...+ ...+....+.++++..+...|++||+.+|+.|
T Consensus 78 ~~-~~~~~p~~~m~~~W~f~~~~-~gT~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 78 AR-RVETGPFAYMNIRWEYTEVP-EGTRMRWVQDFEMKP-GAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred EE-EecCCCcceeeeeEEEEECC-CCEEEEEEEEEEECC-CCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 64 11224688888999999997 469899888776532 12344556888899999999999999999854
No 14
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.53 E-value=2.9e-13 Score=102.46 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=96.0
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
+.++ +|+||+++||+++.|+.+++.|+|.+.++++ ++.+ .+....+.+. .+.. ..+..++. +++ .+++.+..
T Consensus 2 ~~s~--~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSR--LVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGIR-ESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEE--EcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeecccc-EEEEEEEE-ecC-CCEEEEEe
Confidence 5677 9999999999999999999999999999986 4332 2333334333 2221 23445544 777 56899988
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
++| +++.+.+++++.|.++++|+|+|...+.. ..+.....+..++.......|+++++.+++
T Consensus 76 ~~g--~~~~~~g~w~~~p~~~~~T~v~~~~~~~~---~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 76 VDG--PFKHLEGEWRFKPLGENACKVEFDLEFEF---KSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred cCC--ChhhceeEEEEEECCCCCEEEEEEEEEEE---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887 57778899999999988898888876543 223334455677777777777777776654
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.48 E-value=1.3e-12 Score=97.67 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=95.7
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecC-CCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKS-GLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~-g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
++.++ +|+||+++||+++.|+.+++.|+|.+..+..+-. ..|+.+.+.... |.. ..+..+++++|+. +.+.|+.
T Consensus 2 i~~s~--~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~-~Gg~~~~~~~~~~g~~-~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIER--EFDAPPELVWRALTDPELLAQWFGPTTTAEMDLR-VGGRWFFFMTGPDGEE-GWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEE--EecCCHHHHHHHcCCHHHHHhhhCcCCceEEccc-CCceEEEEEECCCCCE-EeccEEEEEEcCC-CeEEEEe
Confidence 55677 9999999999999999999999986333332211 116666544322 221 3578899999986 7899999
Q ss_pred EccCc-cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDH-RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~-p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
..++. +...+..+++|.|.+ ++|.+++...... + ......+...+..-+...|+.||+.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 77 AFSDETPGPETTVTVTLEETG-GGTRLTLTHSGFP---E-EDAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred cccCCCCCCceEEEEEEEECC-CCEEEEEEEEccC---h-HhHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 87654 445677889999998 6787877765432 1 1113345566777788999999999985
No 16
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=6.7e-12 Score=96.20 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=88.4
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecCCCCc-ccEEEEEEEEeCCCCeEEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKSGLPA-TTSTERLELLDDEEHVLRV 107 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~g~p~-~~~~ErL~~~D~~~~~~~Y 107 (189)
..+. +|+||+++||++++|+..++.|.|.+.++++ + ++.++|+..........|. ..+.-+++++++. +.+.|
T Consensus 4 ~~~~--~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~ 80 (146)
T cd07824 4 HTVW--RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPL-SLLEV 80 (146)
T ss_pred eEEE--EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCC-cEEEE
Confidence 4455 8999999999999999999999999999975 4 3456777754443222221 2456677788775 78999
Q ss_pred EEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEec----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029721 108 RIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVD----VPEGNTKDETCYFVEALIKCNLKSLADI 173 (189)
Q Consensus 108 ~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d----~p~~~~~~~~~~~~~~~~~~~L~~L~~~ 173 (189)
.. .|+ +. ...+++|.|.+ +||.|++.+...... ....+....+....+.++...+++||+.
T Consensus 81 ~~-~g~--~~-~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 81 RA-SGD--LE-GVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EE-EEe--ee-EEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 85 453 32 36789999976 579887777654311 1112333444555555555566666654
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.45 E-value=3.5e-12 Score=95.94 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=93.7
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCC-cccEEEEEEEEeCCCCeEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLP-ATTSTERLELLDDEEHVLRVR 108 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p-~~~~~ErL~~~D~~~~~~~Y~ 108 (189)
+++.++ +|++|+++||+++.|+.+++.|.|.+.+++..+++.......+.+ .+.. ....+-++.++|+. +.+.+.
T Consensus 2 ~~~~~~--~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEF--RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV-GPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEE--EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE-ccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 466677 999999999999999999999999998887533221111111222 1100 01235667777775 677777
Q ss_pred EEc-cCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 109 IIG-GDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 109 i~~-g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
... +......+..++.|.|. +++|+++|..++.....-..+....+..++...+...+++|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 78 GEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 654 22345688999999998 478988888876542221223455667777777788888888765
No 18
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=4.1e-12 Score=96.25 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=90.3
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ec--CCCCCeEEEEEecC-CCCcccEEEEEEEEeCCCCeEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QG--NLEIGSLREVDVKS-GLPATTSTERLELLDDEEHVLR 106 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG--~~~vG~vR~~~~~~-g~p~~~~~ErL~~~D~~~~~~~ 106 (189)
++.++ +|+|||++||+++.|+.+++.|+|....... .+ +..+|....+.+.. |.+ ..+..++++++|. ++++
T Consensus 2 i~~~~--~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~-~~l~ 77 (144)
T cd07825 2 VSVSR--TVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEEN-RLIA 77 (144)
T ss_pred eEEEE--EEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCC-CEEE
Confidence 56666 9999999999999999999999985322222 22 35688887766642 333 3567789999996 6799
Q ss_pred EEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 029721 107 VRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTK-DETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 107 Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~-~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
|+......+......+++|.|.++++|+++++..+. ....... ..+......-++..|+.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~---g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 78 WRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWS---AVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEccCCCCCCCceeEEEEEEECCCCcEEEEEEEecc---CChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 986422223334556789999886788666554322 1111000 01123345557889999998875
No 19
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=3.7e-11 Score=87.06 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=90.7
Q ss_pred EEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEe--cCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEE
Q 029721 33 SVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ--GNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRII 110 (189)
Q Consensus 33 ~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~e--G~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~ 110 (189)
.++ .|+||+++||+++.|+.+++.|.|.+.++++. +....|....+.+..+.. .....+++.+++ +..++|...
T Consensus 3 ~~~--~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~ 78 (141)
T cd07812 3 ASI--EIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRR-LTLTSEVTEVDP-PRPGRFRVT 78 (141)
T ss_pred EEE--EeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCcc-ccceEEEEEecC-CCceEEEEe
Confidence 445 89999999999999999999999999998863 234566666655531211 357889999988 568999998
Q ss_pred ccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Q 029721 111 GGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEG---NTKDETCYFVEALIKCNLKSLAD 172 (189)
Q Consensus 111 ~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~---~~~~~~~~~~~~~~~~~L~~L~~ 172 (189)
.++.+ ..+..++.+.+.++++|.+++...+. ++.. .....+.+++...+...++++++
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~t~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 79 GGGGG-VDGTGEWRLEPEGDGGTRVTYTVEYD---PPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred cCCCC-cceeEEEEEEECCCCcEEEEEEEEEe---cCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 76555 57788999999885478666655433 2222 22344455555555555555544
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=2.9e-10 Score=87.12 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=88.6
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccE--EEEEEEEeCCCCeEEEEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTS--TERLELLDDEEHVLRVRI 109 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~--~ErL~~~D~~~~~~~Y~i 109 (189)
+.++ +|+|||++||+++.|+..++.|.|.+.+.+..|++.... .++++-|.-...+ +=++.++++..+.+.+..
T Consensus 2 ~~~~--~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEF--TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKG--TVKVKLGPISASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred CceE--EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEE--EEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence 3456 899999999999999999999999988877544322222 2233212100012 225667773467888875
Q ss_pred EccCc---cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 110 IGGDH---RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 110 ~~g~~---p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
...+. ..-....+++|.|.+ ++|+++|..+.....+-..+....+.+..+.++...+++|++++|
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPAG-GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEecCCCcceEEEEEEEEEEecC-CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 43111 111456678888844 688888887654322333444556677778888888888888876
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=6e-10 Score=84.46 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=78.5
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEec----CCCCCeEEEEEecCC-CCcccEEEEEEEEeCCCCeEE
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQG----NLEIGSLREVDVKSG-LPATTSTERLELLDDEEHVLR 106 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG----~~~vG~vR~~~~~~g-~p~~~~~ErL~~~D~~~~~~~ 106 (189)
+.++ +|+||+|+||+++.|+++++.|.|.+.++++.+ ...+|+.-.+.+..+ .+ ...+-++++++|. +.++
T Consensus 2 ~~s~--~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it~~~p~-~~f~ 77 (137)
T cd07820 2 ERST--VIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEITEVEPP-RRFV 77 (137)
T ss_pred eEEE--EcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEEEEcCC-CeEE
Confidence 5667 999999999999999999999999988887632 234677766666532 22 2457778889885 6799
Q ss_pred EEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEE
Q 029721 107 VRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESF 142 (189)
Q Consensus 107 Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~ 142 (189)
+..+.| |+..+..+..+.|.++ ||++|....+.
T Consensus 78 ~~~~~G--~~~~w~h~~~f~~~~~-gT~vt~~v~~~ 110 (137)
T cd07820 78 DEQVSG--PFRSWRHTHRFEAIGG-GTLMTDRVEYR 110 (137)
T ss_pred EEeccC--CchhCEEEEEEEECCC-ceEEEEEEEEe
Confidence 998877 4555677888988874 78777777654
No 22
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.17 E-value=1.3e-09 Score=81.27 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=80.5
Q ss_pred ecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEEEEEEccCccc
Q 029721 39 IRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLRVRIIGGDHRL 116 (189)
Q Consensus 39 I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g~~p~ 116 (189)
|+||+++||+++.|+++++.|.|.+.++++ +.++. +..-.+.+. .+.+ ..+..++....+. . +.+..+.| ++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g--~~ 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVTEDPPE-R-IRFEQISG--PF 74 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEEEECTT-T-EEEESSET--TE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEEEEEee-e-eeeeecCC--Cc
Confidence 689999999999999999999999999986 43221 211123333 2332 3456666655554 3 66666666 68
Q ss_pred eeEEEEEEEEeeeC--CCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 029721 117 KNYSSIISLHSEII--DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLA 171 (189)
Q Consensus 117 ~~y~ati~v~p~~~--~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~ 171 (189)
+.+.+.+++.|.++ |+|.+.++.... ++++.......+..+++......+++|+
T Consensus 75 ~~~~g~W~~~~~~~~~~g~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 75 KSFEGSWRFEPLGGNEGGTRTRVTYDYE-VDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEEETTECCEEEEEEEEEEE-EETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEEECCCCcCCCEEEEEEEEE-EecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 89999999999884 255444444333 2444444455556666666666666553
No 23
>PRK10724 hypothetical protein; Provisional
Probab=99.17 E-value=1.2e-09 Score=85.79 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=91.4
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e-cCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeE
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q-GNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVL 105 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e-G~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~ 105 (189)
.+++.++ .|++|++++|+++.|.++++.|.|.+.++++ + .++ +.+..+++. .|. ...+..+.. +++. +++
T Consensus 15 ~~i~~~~--~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~~-~~I 87 (158)
T PRK10724 15 PQISRTA--LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTSN-QSI 87 (158)
T ss_pred CeEEEEE--EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecCC-CEE
Confidence 4677777 9999999999999999999999999999986 3 222 223333332 232 124555544 4664 589
Q ss_pred EEEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029721 106 RVRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178 (189)
Q Consensus 106 ~Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~~ 178 (189)
.+.+++| |++.+.+.+++.|.++++|.|++...+.+.. . ....++..+++...+.|-+++++-|
T Consensus 88 ~~~~~~G--pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s---~----l~~~~~~~~~~~~~~~mv~AF~~Ra 151 (158)
T PRK10724 88 LMQLVDG--PFKKLIGGWKFTPLSQEACRIEFHLDFEFTN---K----LIELAFGRVFKELASNMVQAFTVRA 151 (158)
T ss_pred EEEecCC--ChhhccceEEEEECCCCCEEEEEEEEEEEch---H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 6888999999999887789888888776421 1 2233444455555555555555433
No 24
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.10 E-value=1.6e-09 Score=84.31 Aligned_cols=128 Identities=18% Similarity=0.107 Sum_probs=89.3
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
.+..++ +|+||+++||+++.|+..++.|.+.. ..+..+|....+.+..... ..+..+++++|+. +++.|+.
T Consensus 12 ~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~~~~ 82 (157)
T cd08899 12 TLRFER--LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLAFTW 82 (157)
T ss_pred EEEEEE--ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCCC-CccceEEEEEcCC-cEEEEEe
Confidence 344444 99999999999999999999999832 2233466666666543111 3567889999996 7899988
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~~ 178 (189)
..++ .....++.|++.+ ++|.++++.... +.. .....+..-+...|+.|++.+|+..
T Consensus 83 ~~~~---~~~~~~~~l~~~~-~gT~v~~~~~~~----~~~----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 83 GEGG---GESEVRFELAPEG-DGTRLTLTHRLL----DER----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred cCCC---CCceEEEEEEEcC-CCEEEEEEEecc----Cch----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 6543 2445678898876 678776665432 111 2345566668889999999999865
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.06 E-value=9.2e-09 Score=76.67 Aligned_cols=132 Identities=17% Similarity=0.043 Sum_probs=85.3
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
|++.++ .|+|||++||+++.|...++.|.+.. ..+++..+|..-.+...+.. ...+.-+++++++. ++++|+.
T Consensus 1 ~~~~~~--~i~ap~e~Vw~~~td~~~~~~W~~~~---~~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~~~-~~l~~~~ 73 (136)
T cd08893 1 KFVYVT--YIRATPEKVWQALTDPEFTRQYWGGT---TVESDWKVGSAFEYRRGDDG-TVDVEGEVLESDPP-RRLVHTW 73 (136)
T ss_pred CeEEEE--EecCCHHHHHHHHcCchhhhheeccc---ccccCCcCCCeEEEEeCCCc-ccccceEEEEecCC-CeEEEEE
Confidence 355666 99999999999999999999998752 12334446665555554311 12356678888885 6788887
Q ss_pred EccCc----cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDH----RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~----p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
..+.. +......++.|.|.+ ++|+++++... .+.+ ..+...+..-+...|+.|++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~----~~~~---~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 74 RAVWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDG----FPPG---SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred ecCCCcccCCCCCEEEEEEEEecC-CcEEEEEEecC----CCCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 54322 223556778898876 57755554322 1222 123445566677899999998874
No 26
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.01 E-value=1.1e-08 Score=77.84 Aligned_cols=133 Identities=11% Similarity=0.031 Sum_probs=84.4
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCc--cceEEEEecCCCCCeEEEEEec--CCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKP--FVSRCVAQGNLEIGSLREVDVK--SGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P--~v~s~~~eG~~~vG~vR~~~~~--~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
++++.|+||+++||.++.|...+..|.+ .......+.+..+|....+.+. +|.. ....-++++++|. ++|.|+.
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p~-~~l~~t~ 80 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEPP-ERIVYDH 80 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcCC-CEEEEEe
Confidence 4566999999999999999999888863 2222222233345555444442 3431 1235578999995 7899987
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
..+ +. ....+++|.|.+ ++|+++++.. +. +.......+...+..-+...|+.|++.+++
T Consensus 81 ~~~--~~-~~~v~~~~~~~~-~gT~ltl~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 81 GSG--PP-RFRLTVTFEEQG-GKTRLTWRQV---FP-TAAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred ccC--CC-cEEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 543 21 345678999877 7887777642 11 111112223344566688889999988874
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.99 E-value=2.5e-08 Score=75.18 Aligned_cols=136 Identities=15% Similarity=0.091 Sum_probs=85.9
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEe-cCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ-GNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVR 108 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~e-G~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~ 108 (189)
.++.++ +|+||+++||+++.|+..++.|++... +... |.+..| .+.+.++. ...+.-++++++|. +.+.|+
T Consensus 2 ~i~~~i--~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p~-~~l~~~ 73 (145)
T cd08898 2 RIERTI--LIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDPP-RRFSFR 73 (145)
T ss_pred eeEEEE--EecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCCC-cEEEEE
Confidence 577888 999999999999999999999998542 2221 222122 23333321 02456788999995 789998
Q ss_pred EEccC----c---cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 109 IIGGD----H---RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 109 i~~g~----~---p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
..... . .......+++|.+.+ ++|.++++.... ........+.....+..-+...|+.|++++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~--~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGF--DALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCC--CCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 75332 1 122345788999987 678777765321 11111111123445666688899999998873
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=1.1e-07 Score=72.77 Aligned_cols=135 Identities=8% Similarity=-0.037 Sum_probs=85.0
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCccc-eEE-EEecCCCCCeEEEEEec--CCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKPFV-SRC-VAQGNLEIGSLREVDVK--SGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v-~s~-~~eG~~~vG~vR~~~~~--~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
+++++++||+++||+++.|...+..|...- -.+ ..+.+..+|....+.+. +|.. ..+.-++++++|. ++|.|+-
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~~ei~p~-~~l~~t~ 80 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVYHEVTPP-ERIVQTE 80 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEEEEEcCC-CEEEEEe
Confidence 567799999999999999999998987422 111 12344446666555543 3321 2456678899995 7888875
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.-...+-.....+++|.+.+ ++|+++++.. +. .....+..+...+..-+...|+.|++.++
T Consensus 81 ~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 81 EFEGLPDGVALETVTFTELG-GRTRLTATSR---YP-SKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EecCCCCCceEEEEEEEECC-CCEEEEEEEE---eC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 42222222445688999876 7887666532 11 11111223444566668888998888875
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=1.8e-07 Score=71.32 Aligned_cols=132 Identities=17% Similarity=0.065 Sum_probs=82.6
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCcc-----ceEEEEecCCCCCeEEEEEec--CCCCcccEEEEEEEEeCCCCeEE
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKPF-----VSRCVAQGNLEIGSLREVDVK--SGLPATTSTERLELLDDEEHVLR 106 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P~-----v~s~~~eG~~~vG~vR~~~~~--~g~p~~~~~ErL~~~D~~~~~~~ 106 (189)
++++.++||+++||+++.|...+..|... +..++ .+..+|....+.+. +|.. ....=+++++||. +++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~--~d~~~Gg~~~~~~~~~~g~~-~~~~g~~~~~~p~-~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDE--FDFRVGGREVSRGGPKGGPE-ITVEARYHDIVPD-ERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeE--EecCCCCEEEEEEECCCCCE-EeeeEEEEEecCC-ceEE
Confidence 45678999999999999999999999742 22333 33335555333332 4431 2456688899995 7888
Q ss_pred EEEEc--cCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 107 VRIIG--GDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 107 Y~i~~--g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
|+... ++.+......++.|.+.+ ++|.++++...... +.. +. ...+..-+...|+.|++.+++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~--~~~---~~-~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL--DGD---DD-PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecc--ccc---ch-hhhHHHHHHHHHHHHHHHHhC
Confidence 87632 222322344689999876 67876666543211 111 11 233445577789999998874
No 30
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=1.1e-07 Score=72.77 Aligned_cols=134 Identities=18% Similarity=0.100 Sum_probs=80.4
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCc-c---ceEEEEecCCCCCeEEEEEec--CCCCcccEEEEEEEEeCCCCeEEE
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKP-F---VSRCVAQGNLEIGSLREVDVK--SGLPATTSTERLELLDDEEHVLRV 107 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P-~---v~s~~~eG~~~vG~vR~~~~~--~g~p~~~~~ErL~~~D~~~~~~~Y 107 (189)
.+++.|+||+++||+++.|...+..|.+ . +..+++ +..+|..-.+.+. +|.. ..+.=++.++||. ++|.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~--d~~~GG~~~~~~~~~~g~~-~~~~g~v~~i~p~-~~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL--DLRPGGAFRTVMRGPDGEE-FPNPGCFLEVVPG-ERLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE--EeecCcEEEEEEECCCCCE-ecceEEEEEEeCC-CEEEE
Confidence 4567999999999999999999888864 1 223332 3334555444442 3321 2346679999996 78988
Q ss_pred EEE--ccCcc-cee-EEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 108 RII--GGDHR-LKN-YSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 108 ~i~--~g~~p-~~~-y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+-. ++..+ -.. -..+++|+|.+ ++|+++++... . .....+.....-+..-+...|+.|+++++.
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~---~-~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARH---W-TEADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEe---C-CHHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 742 22111 111 34679999876 78877765321 1 111111111122345588899999998863
No 31
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.83 E-value=6e-08 Score=75.06 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=69.3
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCccc--EEEEEEEEeCCCCeEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATT--STERLELLDDEEHVLRV 107 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~--~~ErL~~~D~~~~~~~Y 107 (189)
+++.+. .|++|+++||+.|.|+..+....|.+.+.+.+|+.-.+.++ +.+ |.-... -+=++..+|+..++++.
T Consensus 2 ~~~G~f--~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~~v~-l~i--g~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 2 DYEGTF--RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTAKVK-LKI--GPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred cccceE--EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEEEEE-Eee--cceeEEEEEEEEEccccCCCcEEEE
Confidence 345566 89999999999999999999999999999887752112222 222 110012 23355665666676666
Q ss_pred EEEccCc-cceeEEEEEEEEeeeCCCceEEEEEE
Q 029721 108 RIIGGDH-RLKNYSSIISLHSEIIDGRMGTLVLE 140 (189)
Q Consensus 108 ~i~~g~~-p~~~y~ati~v~p~~~~gt~vt~~~~ 140 (189)
.--.|.. .+-+..+.++|.|.++ +|+++|...
T Consensus 77 ~g~G~~~~g~~~~~~~v~l~~~g~-gt~v~w~~~ 109 (146)
T COG3427 77 NGSGGGAAGFADGTVDVQLEPSGE-GTRVNWFAD 109 (146)
T ss_pred EeecccccceeeeeeEEEEEEcCC-CcEEEEEEE
Confidence 5554222 5667788899999885 486666643
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.81 E-value=1.9e-07 Score=70.42 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=80.3
Q ss_pred EeeeecCCHHHHHHHHhcCCCCcccCccceE---EEEecCCCCCeEEEEEe--cCCCCcccEEEEEEEEeCCCCeEEEEE
Q 029721 35 LKKHIRAPVHLVWSLVRRFDQPQKYKPFVSR---CVAQGNLEIGSLREVDV--KSGLPATTSTERLELLDDEEHVLRVRI 109 (189)
Q Consensus 35 v~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s---~~~eG~~~vG~vR~~~~--~~g~p~~~~~ErL~~~D~~~~~~~Y~i 109 (189)
+++.|+||+++||+++.|...+..|.+.... ...+.+-.+|....+.+ .+|.....+.-++.+++|. ++|.|+.
T Consensus 4 ~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~~l~~~~ 82 (133)
T cd08897 4 VETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-KLIEYTM 82 (133)
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-CEEEEEc
Confidence 4459999999999999999999999543211 11223444666655444 2332112356678899995 7899997
Q ss_pred EccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 110 IGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
..+ ...++.|.|.+ ++|+++++. +..+.. ....+..-+...|+.|++++|.
T Consensus 83 ~~~------~~v~~~l~~~~-~gT~l~l~~-----~~~~~~----~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 83 EDG------REVEVEFTEEG-DGTKVVETF-----DAENEN----PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred CCC------CEEEEEEEECC-CCEEEEEEE-----CCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence 432 35689999876 778666542 211111 2233445578899999998873
No 33
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.79 E-value=3.7e-07 Score=70.12 Aligned_cols=136 Identities=11% Similarity=-0.002 Sum_probs=80.4
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCc-c-------ceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCC
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKP-F-------VSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEE 102 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P-~-------v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~ 102 (189)
++.++ +|+||+++||+++.| .+..|.+ . ...|+++ ..+|....+...+|. ....=++.+++|.
T Consensus 2 ~~~~~--~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d--~~~GG~~~~~~~~g~--~~~~g~v~~v~p~- 72 (149)
T cd08891 2 VRKSV--TVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE--PRAGGRWYEIGEDGT--ECEWGTVLAWEPP- 72 (149)
T ss_pred eEEEE--EecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc--ccCCcEEEEecCCCc--EeceEEEEEEcCC-
Confidence 34455 999999999999999 4778864 2 1334442 224444333333443 2235678899996
Q ss_pred CeEEEEEE-ccCc-cce--eEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 103 HVLRVRII-GGDH-RLK--NYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 103 ~~~~Y~i~-~g~~-p~~--~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
++|+|+-. .... +.. .-..++.|+|.++++|+++++...... .+.+..+......+..-....|+.|++.+|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~-~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFER-HGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccc-cCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 78988864 2111 111 235678999876467877776543211 1111112223334455577789999999885
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.77 E-value=8.9e-07 Score=67.74 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=80.7
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCc-c-ceEEEEecCCCCCeEEEEEe--cC-------CCCcccEEEEEEEEeCCC
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKP-F-VSRCVAQGNLEIGSLREVDV--KS-------GLPATTSTERLELLDDEE 102 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P-~-v~s~~~eG~~~vG~vR~~~~--~~-------g~p~~~~~ErL~~~D~~~ 102 (189)
++++.|+||+++||+++.|...+..|.+ . +.....+.+..+|....+.+ .+ |. ...+.=++++++|.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~-~~~~~g~v~~v~p~- 80 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGN-TDVFGGRFLELVPN- 80 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCc-EeeeEEEEEEEcCC-
Confidence 4567999999999999999999999975 2 22211123333555433333 22 11 12345578999996
Q ss_pred CeEEEEEEc--cCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 103 HVLRVRIIG--GDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 103 ~~~~Y~i~~--g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
++|.|+..- +..+ .....++.|++.+ ++|.++++... .+.. ........-....|+.|+++++
T Consensus 81 ~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~T~lt~~~~~----~~~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 81 ERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GGTDVTIVQSG----IPDG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CEEEEEEEecCCCCC-ceEEEEEEEEecC-CCEEEEEEEeC----CCch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 689998542 2223 2346789999887 67866666531 1222 1123455557788899998876
No 35
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.68 E-value=1e-06 Score=64.63 Aligned_cols=123 Identities=15% Similarity=0.048 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEccCc-ccee
Q 029721 40 RAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDH-RLKN 118 (189)
Q Consensus 40 ~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g~~-p~~~ 118 (189)
+||+++||+++.+...+..|.+ ... .+.+..+|....+.-.+|.. ....=++++++|. ++|.|+...++. +-..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~--~~~~~~~Gg~~~~~~~~g~~-~~~~~~v~~~~p~-~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSE--AEMDFRPGGSFRFMDPDGGE-FGFDGTVLEVEPP-ERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEE--EEEECSTTEEEEEEETTSEE-EEEEEEEEEEETT-TEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCc--ceeeeecCCEEEEEecCCCC-ceeeEEEEEEeCC-EEEEEEEEccCCCCCCc
Confidence 6999999999999999999921 122 22333456655552234431 2344469999996 789998654333 2335
Q ss_pred EEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 119 YSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 119 y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
...++.|.+ .+++|+++++.... + . .......+..-+...|++|++.+|
T Consensus 76 ~~v~~~~~~-~~~~T~l~~~~~~~--~--~---~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 76 SRVTFEFEE-EGGGTRLTLTHSGF--P--D---DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEEE--H--S---HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEE-cCCcEEEEEEEEcC--C--c---cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999 54788777766322 1 1 111122166668888999999886
No 36
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=8.1e-07 Score=67.31 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=81.0
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRII 110 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~ 110 (189)
+..++ .|+||+++||+++.+...+..|.+.-...++ .+|....+.+....+ .+.=++++++|. +++.|+..
T Consensus 2 ~~~~~--~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~----~~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~w~ 72 (136)
T cd08901 2 AKTAM--LIRRPVAEVFEAFVDPEITTKFWFTGSSGRL----EEGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIEWG 72 (136)
T ss_pred eeEEE--EecCCHHHHHHHhcCHHHhccccccCCCccc----cCCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEEec
Confidence 45667 9999999999999999999888543222222 244443344432211 345578899995 78999875
Q ss_pred ccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 029721 111 GGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETC--YFVEALIKCNLKSLADISERH 177 (189)
Q Consensus 111 ~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~--~~~~~~~~~~L~~L~~~~e~~ 177 (189)
.++ + .-..+++|.+.++++|+++++... .+.. ..+... ..+..-+...|+.|++.+|..
T Consensus 73 ~~~-~--~s~v~~~l~~~~~ggT~ltl~~~~----~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 73 DPG-E--PTTVEWTFEELDDGRTFVTITESG----FPGT-DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred CCC-C--CEEEEEEEEECCCCcEEEEEEECC----CCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 421 1 234678999876567877766431 2222 111111 122344788899999999864
No 37
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.64 E-value=1e-06 Score=70.14 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=98.2
Q ss_pred CCCCceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCe
Q 029721 25 DVADHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHV 104 (189)
Q Consensus 25 ~~~~~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~ 104 (189)
...+.+++.+| +|++|+|+||.+++|+.++|.|+-.+.|+++--+. . +.-.+....|.. ....-+|++.-+ +..
T Consensus 66 ~~~~i~v~~~V--~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk-r-SrW~~~ap~g~~-v~Wea~it~d~~-~e~ 139 (217)
T COG5637 66 MAKPIEVEVQV--TIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK-R-SRWKANAPLGLE-VEWEAEITKDIP-GER 139 (217)
T ss_pred ccCceEEEEEE--EeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCC-c-cceeEcCCCCce-EEEeehhhccCC-CcE
Confidence 46678889999 99999999999999999999999999999873232 1 222233323321 234566776545 678
Q ss_pred EEEEEEccC-ccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHhhhc
Q 029721 105 LRVRIIGGD-HRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYF----VEALIKCNLKSLADISERHAL 179 (189)
Q Consensus 105 ~~Y~i~~g~-~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~----~~~~~~~~L~~L~~~~e~~~~ 179 (189)
+.|+-++|. ++- .+.+++.+..+..|+|.+++.|. +|.+.......++ .+.-++.-|+..+..+|..-.
T Consensus 140 I~W~Sl~Ga~v~N---sG~VrF~~~pg~~t~V~v~lsY~---~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~q~ 213 (217)
T COG5637 140 IQWESLPGARVEN---SGAVRFYDAPGDSTEVKVTLSYR---PPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENGQP 213 (217)
T ss_pred EeeecCCCCcCCC---CccEEeeeCCCCceEEEEEEEec---CCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHccCc
Confidence 999998872 333 34577877775567888877543 4555443333333 345567788888888887655
Q ss_pred cCC
Q 029721 180 LDR 182 (189)
Q Consensus 180 ~~~ 182 (189)
+.|
T Consensus 214 s~r 216 (217)
T COG5637 214 SGR 216 (217)
T ss_pred ccC
Confidence 554
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.63 E-value=7.5e-06 Score=65.39 Aligned_cols=141 Identities=9% Similarity=0.014 Sum_probs=82.2
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCC---cccEEEEEEEEeCCCCe
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLP---ATTSTERLELLDDEEHV 104 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p---~~~~~ErL~~~D~~~~~ 104 (189)
..+..+. +|++|+++||+++.|.+.+++|.|.+..+++ +-.+.--.+-...+....| ...+..+-...+..+..
T Consensus 41 ~~~k~~~--~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVA--EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEE--EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 5666666 8999999999999999999999999999986 4211111222222222221 11222221223221234
Q ss_pred EEEEEEccCc--c-------ceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 105 LRVRIIGGDH--R-------LKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 105 ~~Y~i~~g~~--p-------~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
+...+...+. | +..+.+.+.++|.++++|.+++.... ++........+..++.......+++|++.+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~---dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYA---DPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEe---CCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444433321 2 45677888999998777877776643 433333344445556665666666666653
No 39
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.59 E-value=1.1e-06 Score=67.25 Aligned_cols=133 Identities=20% Similarity=0.129 Sum_probs=74.4
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCC-C-cccEEEEEEEEeCCCCeEEEEEEccCc-
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGL-P-ATTSTERLELLDDEEHVLRVRIIGGDH- 114 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~-p-~~~~~ErL~~~D~~~~~~~Y~i~~g~~- 114 (189)
+|++|+++||++|.|+..+....|.+.+.+..| +..-.. ++++-|. . .-..+=++.+.|+.. .+...+.....
T Consensus 4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~--~~v~vG~i~~~~~g~~~~~~~~~~~-~~~~~~~g~g~~ 79 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGK--VKVKVGPIKGTFDGEVRITEIDPPE-SYTLEFEGRGRG 79 (140)
T ss_dssp EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEE--EEEESCCCEEEEEEEEEEEEEETTT-EEEEEEEEEECT
T ss_pred EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEE--EEEEeccEEEEEEEEEEEEEcCCCc-ceEeeeeccCCc
Confidence 899999999999999999999999999987654 211111 1221121 0 012344677788864 44454433222
Q ss_pred cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 115 RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 115 p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
.-.+..+.+++...++++|+++|..+.........+....+....+.++..-.+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 80 GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223445566666655556877777655432222223344555555555555666665543
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.59 E-value=2.6e-06 Score=63.81 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=75.3
Q ss_pred EEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEccC
Q 029721 34 VLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGD 113 (189)
Q Consensus 34 sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g~ 113 (189)
++++.|+||+++||+++.+...+..|.......+ ..+|.... +.+| .+.=++.+++|. ++++|+-.-.+
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d----~~~GG~~~--~~~g----~~~g~~~~i~p~-~~l~~~w~~~~ 71 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVD----AKVGGKFS--LFGG----NITGEFVELVPG-KKIVQKWRFKS 71 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceec----CCCCCEEE--EeCC----ceEEEEEEEcCC-CEEEEEEEcCC
Confidence 4556999999999999999999989974322222 22443322 2245 245578889985 77887764322
Q ss_pred ccc-eeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 114 HRL-KNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 114 ~p~-~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.+. ..-..++.|.+.+ ++|+++++... .+.. .....-.++-...++.|++.++
T Consensus 72 ~~~~~~s~v~~~l~~~~-~gT~ltl~~~g----~~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 72 WPEGHYSTVTLTFTEKD-DETELKLTQTG----VPAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCcEEEEEEEEECC-CCEEEEEEEEC----CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 221 2244678898875 67877666532 1222 1223344444457888888775
No 41
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.43 E-value=5.2e-06 Score=64.07 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=93.6
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEec-CCCCcccEEEEEEEEeCCCCeEEE
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVK-SGLPATTSTERLELLDDEEHVLRV 107 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~~~~Y 107 (189)
+++.+. .|..+|+++++++.|...+|.+.|.+..+.+ +.++ ...+=.+++. .|. ..++.-|.+ +++..+.+.-
T Consensus 3 ~~~~s~--lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 3 QIERTA--LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNE-RELIAELDVGFKGI-RETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred eeEeee--eccCCHHHHHHHHHHHHhCchhccccccceEeccCc-ceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhh
Confidence 355555 8999999999999999999999999988876 4322 2233223332 221 124444544 4455556666
Q ss_pred EEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029721 108 RIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHALL 180 (189)
Q Consensus 108 ~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~~~~ 180 (189)
.+++| |++-..++|++.|.++++|.|.+.+++++. ......++..++...-..+-+.+++-|.+
T Consensus 78 ~l~~G--PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~-------s~ll~~~~g~~f~~~a~~mv~aF~kRA~~ 141 (146)
T COG2867 78 KLIDG--PFKYLKGGWQFTPLSEDACKVEFFLDFEFK-------SRLLGALIGPVFKRLASKMVEAFEKRAKE 141 (146)
T ss_pred hhhcC--ChhhhcCceEEEECCCCceEEEEEEEeeeh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766 666677899999988789999999888753 23345666667777777777777776653
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.8e-05 Score=59.52 Aligned_cols=137 Identities=13% Similarity=-0.030 Sum_probs=77.8
Q ss_pred EEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEcc
Q 029721 33 SVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGG 112 (189)
Q Consensus 33 ~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g 112 (189)
-.++++|++|+++||+++.|-..+..|.. -..++.+...+.+....+...+|. ...+.-++.+++|. ++|.|+-...
T Consensus 10 ~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~-~~~~~~~~~~v~p~-~rIv~tw~~~ 86 (149)
T COG3832 10 LEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGP-VHSFEGEYLEVVPP-ERIVFTWDFD 86 (149)
T ss_pred EEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCC-eeecceEEEEEcCC-cEEEEEeccC
Confidence 34455999999999999999999999986 322333211112333334443442 23467788899996 7788876543
Q ss_pred --CccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 113 --DHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 113 --~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
..|...-..+++|++..++++ .+.+..+. .......+......+..-+...++.|++.++
T Consensus 87 ~~~~~~~~~~v~~~l~~~~~g~~-~~~~~~~~--~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 87 EDGEPFLKSLVTITLTPEDDGGT-TTLVRTSG--GGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred CCCCcccCceEEEEEEEecCCCc-EEEEEEee--ccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 334445567888988765541 13332221 1111111111111224457777888877765
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.82 E-value=0.00032 Score=53.14 Aligned_cols=124 Identities=9% Similarity=-0.027 Sum_probs=70.3
Q ss_pred ecCCHHHHHHHHhcCCCCcccC-ccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEccC-ccc
Q 029721 39 IRAPVHLVWSLVRRFDQPQKYK-PFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGD-HRL 116 (189)
Q Consensus 39 I~Ap~d~VW~vl~df~~~~~W~-P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g~-~p~ 116 (189)
++||+++||.++.|...+..|. + ..+++ +..+|....+. .+ .+.=+.+++||. ++|.|+---.+ .+-
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~--~~~~~--d~~~GG~f~~~--~~----~~~G~~~ev~pp-~rlv~tw~~~~~~~~ 69 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG--SPAEM--DAKVGGKFSLF--NG----SVEGEFTELEKP-KKIVQKWRFRDWEED 69 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC--CCccc--cCCcCCEEEEe--cC----ceEEEEEEEcCC-CEEEEEEecCCCCCC
Confidence 4899999999999988888884 3 12333 22355543332 23 355678889996 67877764222 111
Q ss_pred eeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 029721 117 KNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKC-NLKSLADISE 175 (189)
Q Consensus 117 ~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~-~L~~L~~~~e 175 (189)
..-..++.|.+.++++|+++++..... ..+..........++.-... .|+.|++.++
T Consensus 70 ~~s~vt~~~~~~~~g~T~lt~~~~g~~--~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 70 VYSKVTIEFRAVEEDHTELKLTQTGIP--SLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CceEEEEEEEeCCCCcEEEEEEEecCc--cccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 123478899987656787777754221 11110000112223333444 4788877664
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.20 E-value=0.031 Score=45.62 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=81.4
Q ss_pred ceEEEEEeeeecCCHHHHH-HHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEec-CCC---CcccEEEEEEEEeC
Q 029721 29 HQCSSVLKKHIRAPVHLVW-SLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVK-SGL---PATTSTERLELLDD 100 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW-~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~-~g~---p~~~~~ErL~~~D~ 100 (189)
..+.... .|++|+++|+ .++-|.+..++|.+.+.++++ + +++ .--++.+... .+. ++..+.-+....++
T Consensus 49 k~~k~e~--~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~-~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~ 125 (209)
T cd08905 49 KVFRLEV--VVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD-TLITHEVAAETAGNVVGPRDFVSVRCAKRRG 125 (209)
T ss_pred cEEEEEE--EecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC-ceEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence 3344444 8999999999 777789999999999988874 3 222 1112332221 111 11223333333333
Q ss_pred CCCeE-EEEEEccCc-------cceeEEEEEEEEeeeC--CCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029721 101 EEHVL-RVRIIGGDH-------RLKNYSSIISLHSEII--DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSL 170 (189)
Q Consensus 101 ~~~~~-~Y~i~~g~~-------p~~~y~ati~v~p~~~--~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L 170 (189)
.+..+ ..++.-... ....+.+-+.++|.++ +.|.++|... .|+-..+....+-.++....-..|.+|
T Consensus 126 ~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~---~DpkG~iP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08905 126 STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLS---IDLKGWLPKSIINQVLSQTQVDFANHL 202 (209)
T ss_pred CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEe---ecCCCCCCHHHHHHHhHHhHHHHHHHH
Confidence 33222 222211111 2445667789999864 5675655543 353333445566677777777889999
Q ss_pred HHHHHh
Q 029721 171 ADISER 176 (189)
Q Consensus 171 ~~~~e~ 176 (189)
++.++.
T Consensus 203 r~~~~~ 208 (209)
T cd08905 203 RQRMAS 208 (209)
T ss_pred HHHHhc
Confidence 998873
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.19 E-value=0.047 Score=44.68 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=62.7
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ec-CCCCCeEEEEEec-C--C--CCcccEEEEEEEEeCC
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QG-NLEIGSLREVDVK-S--G--LPATTSTERLELLDDE 101 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG-~~~vG~vR~~~~~-~--g--~p~~~~~ErL~~~D~~ 101 (189)
..+.... +|++|+++||+++.|....++|.+.+.++++ +- +....-++. ... . . .|+..+.=+ ...++.
T Consensus 45 ~~~~ge~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~-~~~~Pwp~~~~~RDfV~l~-~~~~~~ 120 (205)
T cd08874 45 HGFLGAG--VIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYL-VHETPLCLLKQPRDFCCLQ-VEAKEG 120 (205)
T ss_pred ceEEEEE--EEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEE-EecCCCCCCCCCCeEEEEE-EEEECC
Confidence 3344444 7899999999999999999999999999986 42 222232333 221 1 1 222222222 223333
Q ss_pred CCeE-EEEEEcc-Ccc--------ceeEEEEEEEEee---eCCCceEEEEEEE
Q 029721 102 EHVL-RVRIIGG-DHR--------LKNYSSIISLHSE---IIDGRMGTLVLES 141 (189)
Q Consensus 102 ~~~~-~Y~i~~g-~~p--------~~~y~ati~v~p~---~~~gt~vt~~~~~ 141 (189)
+..+ ...-+.. .+| ...+.+-+.+.|. +++.|.+|+....
T Consensus 121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~ 173 (205)
T cd08874 121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQV 173 (205)
T ss_pred CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEE
Confidence 3322 2222222 112 3355677899998 7667877776653
No 46
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.07 E-value=0.093 Score=42.88 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=77.8
Q ss_pred ceEEEEEeeeecCCHHHHH-HHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEec-CCCC---cccEEEEEEEEeC
Q 029721 29 HQCSSVLKKHIRAPVHLVW-SLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVK-SGLP---ATTSTERLELLDD 100 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW-~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~-~g~p---~~~~~ErL~~~D~ 100 (189)
..+.... +|++|+++++ .++.|....++|.+.+.+|++ + +++. --++.+... .+.| +..+.-+-..-+.
T Consensus 49 ~~fk~~~--~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 49 KTFILKA--FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred cEEEEEE--EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 3344444 8899999998 689999999999999999985 3 2221 111233222 1122 1223223333333
Q ss_pred CCCe-EEEEEEccCc-cceeE-------EEEEEEEe-eeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029721 101 EEHV-LRVRIIGGDH-RLKNY-------SSIISLHS-EIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSL 170 (189)
Q Consensus 101 ~~~~-~~Y~i~~g~~-p~~~y-------~ati~v~p-~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L 170 (189)
.... +..++..... |.++| .+.+...+ .+++.|.+||..+. |+-..+....+-.++....-..|.+|
T Consensus 126 ~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~---Dp~G~lP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 126 DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNT---DLKGRLPRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEec---CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3321 2223322222 22222 23344443 45567766666543 43333445566677777777888899
Q ss_pred HHHHHh
Q 029721 171 ADISER 176 (189)
Q Consensus 171 ~~~~e~ 176 (189)
++.++.
T Consensus 203 R~~~~~ 208 (209)
T cd08906 203 RQRIRD 208 (209)
T ss_pred HHHHhh
Confidence 988764
No 47
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.91 E-value=0.043 Score=42.75 Aligned_cols=125 Identities=17% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCHHHHHHHHhc-CCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEccCccceeE
Q 029721 41 APVHLVWSLVRR-FDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIGGDHRLKNY 119 (189)
Q Consensus 41 Ap~d~VW~vl~d-f~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~g~~p~~~y 119 (189)
...++||.-|-. ..+...+.|.|.+|++--+....-.|.++| ++ ..++|++..+.+ .++.| .. .+ .-
T Consensus 18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~f-g~---~~v~E~v~~~~~--~~V~f--~~--~~--Gs 85 (149)
T PF08982_consen 18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTF-GG---ATVRERVTLYPP--ERVDF--AQ--HD--GS 85 (149)
T ss_dssp --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEE-TT---EEEEEEEEEETT--TEEEE--SS--SB--EE
T ss_pred cCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEE-CC---cEEEEEEEEeCC--cEEEE--Ec--CC--CC
Confidence 356799998764 466778999999999721122456799999 33 379999876544 57888 11 11 12
Q ss_pred EEEEEEEeeeCCCc-eEEEEEEEEEecC--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 029721 120 SSIISLHSEIIDGR-MGTLVLESFVVDV--PEG-NTKDETCYFVEALIKCNLKSLADISERHALL 180 (189)
Q Consensus 120 ~ati~v~p~~~~gt-~vt~~~~~~~~d~--p~~-~~~~~~~~~~~~~~~~~L~~L~~~~e~~~~~ 180 (189)
.-++.+...+ .+- -+|++ |...-+ .++ ........++..+|+.+...--+.+..++..
T Consensus 86 ~lt~~I~e~~-~g~L~ltf~--ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 86 SLTNIISEPE-PGDLFLTFT--YEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp EEEEEEEEEE-TTEEEEEEE--EEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEecCC-CCcEEEEEE--EEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2344444333 342 23333 222111 222 2223345666677766655544555555443
No 48
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.16 Score=39.05 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=74.5
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEec---CCCC-cccEEEEEEE--EeCCCCeEEEEEE
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVK---SGLP-ATTSTERLEL--LDDEEHVLRVRII 110 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~---~g~p-~~~~~ErL~~--~D~~~~~~~Y~i~ 110 (189)
+|+||.|.||+.-+..+++..--|--. +.+ +|+ +++..-.+.+. -|.| ....+-++++ +|+. .+|+=.++
T Consensus 9 ~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~-~~FtDv~i 85 (153)
T COG4276 9 TITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG-SRFTDVCI 85 (153)
T ss_pred EecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCCc-ceeeeeee
Confidence 789999999999998888644433222 222 342 23333223222 2222 1356778887 8885 67888889
Q ss_pred ccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHHHHH
Q 029721 111 GGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGN-----TKDETCYFVEALIKCNLKSLADI 173 (189)
Q Consensus 111 ~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~-----~~~~~~~~~~~~~~~~L~~L~~~ 173 (189)
.|++|.-++.-+=++.+.+ ++| ....+-.+.+|.+. ....+.-+++.+|+.-=..|.+.
T Consensus 86 ~gPfp~~~WrHtH~F~~eg-g~T---vliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l~r~ 149 (153)
T COG4276 86 TGPFPALNWRHTHNFVDEG-GGT---VLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTLFRG 149 (153)
T ss_pred cCCccceeeEEEeeeecCC-CcE---EEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 9988876666677777666 565 33333333445441 12333445555555544444443
No 49
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.67 E-value=0.27 Score=40.12 Aligned_cols=137 Identities=10% Similarity=-0.031 Sum_probs=75.6
Q ss_pred ee-cCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCC---cccEEEEEEEEeCCCCeE-EEEEEc
Q 029721 38 HI-RAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLP---ATTSTERLELLDDEEHVL-RVRIIG 111 (189)
Q Consensus 38 ~I-~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p---~~~~~ErL~~~D~~~~~~-~Y~i~~ 111 (189)
++ ++|++++++++.|....+.|.+.+..+++ +--+.--.+....+....| +..+--+....++....+ ..++..
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~ 133 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKH 133 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccC
Confidence 44 79999999999998888999999888874 4211111222232321111 122222322333321111 112211
Q ss_pred cCcc-------ceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029721 112 GDHR-------LKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERH 177 (189)
Q Consensus 112 g~~p-------~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~ 177 (189)
...| ...+.+-+.++|.++++|.++++... |+-.......+-.++....-..|++|++++++-
T Consensus 134 ~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~---Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 134 KKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQN---DPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred CCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEec---CCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1112 23456667899987778866666432 432223344445566666678888888888763
No 50
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.51 E-value=0.15 Score=41.36 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=82.1
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCCc-ccEEEEEE------EEeCC
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLPA-TTSTERLE------LLDDE 101 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p~-~~~~ErL~------~~D~~ 101 (189)
...--++..|++|++.+.+++.|.+..+.|.|.+..++. +..+..-.+-.+.+ ..|+ ..-+|-+. .+++
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~~- 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLEE- 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeecc-
Confidence 334444458999999999999999999999999877763 32111112222222 2232 11233322 2323
Q ss_pred CCeEEEEE--EccC----------c--------cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCC-CCHHHHHHHHH
Q 029721 102 EHVLRVRI--IGGD----------H--------RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEG-NTKDETCYFVE 160 (189)
Q Consensus 102 ~~~~~Y~i--~~g~----------~--------p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~-~~~~~~~~~~~ 160 (189)
+..+...+ +... + ....+.+-+.++|.+++.|.++++.. .||-.. .....+-.+..
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~---~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVAN---VDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEE---cCCCcccCCHHHHHHHHH
Confidence 33332222 1100 1 23456677899999878887766654 243223 34556666777
Q ss_pred HHHHHHHHHHHHHHHh
Q 029721 161 ALIKCNLKSLADISER 176 (189)
Q Consensus 161 ~~~~~~L~~L~~~~e~ 176 (189)
.+....+.+|++.+++
T Consensus 199 ~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 199 KFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777888999888764
No 51
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.48 E-value=0.32 Score=39.23 Aligned_cols=134 Identities=13% Similarity=-0.031 Sum_probs=75.7
Q ss_pred EEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecCCCC---cccEEEEEEEEeCCCC--
Q 029721 32 SSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKSGLP---ATTSTERLELLDDEEH-- 103 (189)
Q Consensus 32 ~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~g~p---~~~~~ErL~~~D~~~~-- 103 (189)
.... +|++++++|+..+-|.. +.|.+.+.++++ + +++ - .+-...+..-.| ...+.-|....+.++.
T Consensus 47 K~~~--~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~-~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 47 RAST--EVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDED-T-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEE--EeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCC-c-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 5555 88999999999887753 789999999885 4 222 1 122222211111 1222222333333332
Q ss_pred eEEEEEEcc--Ccc-----ceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 104 VLRVRIIGG--DHR-----LKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 104 ~~~Y~i~~g--~~p-----~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.+.+.-++. ..| ...+.+-+.++|.++++|.+|+..+. | |.|.....+......+....|++|++-|.
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~---D-p~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRV---D-LRGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEE---C-CCCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 222222321 122 34555778899988778878777654 3 33333333445566777788888887654
No 52
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.39 E-value=0.21 Score=41.86 Aligned_cols=101 Identities=9% Similarity=-0.008 Sum_probs=58.8
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecCC-CC---cccEEEEEEEEeCCC-Ce--EEE
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKSG-LP---ATTSTERLELLDDEE-HV--LRV 107 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~g-~p---~~~~~ErL~~~D~~~-~~--~~Y 107 (189)
.+++|+++|+++|.|....++|.+.+.+|++ + +++ . .+..+...+- .| ...+.-+-...+.+. .. +..
T Consensus 88 ~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~-~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~ 165 (240)
T cd08913 88 VVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDED-D-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIAL 165 (240)
T ss_pred EEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCC-c-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEE
Confidence 7899999999999999999999999999986 3 233 2 2444432221 12 112211111121121 11 222
Q ss_pred EEEc-cCcc-------ceeEEEEEEEEeeeCCCceEEEEEE
Q 029721 108 RIIG-GDHR-------LKNYSSIISLHSEIIDGRMGTLVLE 140 (189)
Q Consensus 108 ~i~~-g~~p-------~~~y~ati~v~p~~~~gt~vt~~~~ 140 (189)
..+. ...| ..++.+-+.+.|.+++.|.++|...
T Consensus 166 ~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~ 206 (240)
T cd08913 166 RSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQ 206 (240)
T ss_pred EEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEE
Confidence 2222 2222 3455677899998877887776553
No 53
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.30 E-value=0.51 Score=39.51 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=61.7
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecC---CCCcccEEEEEEE--EeCCC-CeEEEE
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKS---GLPATTSTERLEL--LDDEE-HVLRVR 108 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~---g~p~~~~~ErL~~--~D~~~-~~~~Y~ 108 (189)
++++|+++|++++.|....++|-+.+.++++ + +++ .+-++ +.+.. -.|...+.-+-.. .+... ..+...
T Consensus 84 ~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~ 161 (235)
T cd08873 84 KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFR 161 (235)
T ss_pred EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cEEEE-EEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEe
Confidence 7899999999999999999999999999985 4 332 33333 33321 1222222221111 22222 222332
Q ss_pred EEc-cC-------ccceeEEEEEEEEeeeCCCceEEEEEEE
Q 029721 109 IIG-GD-------HRLKNYSSIISLHSEIIDGRMGTLVLES 141 (189)
Q Consensus 109 i~~-g~-------~p~~~y~ati~v~p~~~~gt~vt~~~~~ 141 (189)
-+. .. .....+.+-+.+.|.++++|.+++..+.
T Consensus 162 SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~ 202 (235)
T cd08873 162 SVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNET 202 (235)
T ss_pred eeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEc
Confidence 233 11 1345677889999998788888887764
No 54
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.06 E-value=0.41 Score=37.22 Aligned_cols=131 Identities=20% Similarity=0.144 Sum_probs=66.3
Q ss_pred eeecCCHHHHHHHHhcCCCC----cccC---ccceEEEEecCCCCCeEEEEEec-CCCCc---------ccEEEEEEEE-
Q 029721 37 KHIRAPVHLVWSLVRRFDQP----QKYK---PFVSRCVAQGNLEIGSLREVDVK-SGLPA---------TTSTERLELL- 98 (189)
Q Consensus 37 ~~I~Ap~d~VW~vl~df~~~----~~W~---P~v~s~~~eG~~~vG~vR~~~~~-~g~p~---------~~~~ErL~~~- 98 (189)
.++++|+|+||+++.|-.-+ .... ..+.+++.+|++ +-....-.+. +..|. ..++ +-..+
T Consensus 5 ~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~-~~e~w~ 82 (159)
T PF10698_consen 5 VEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVT-RTETWT 82 (159)
T ss_pred EEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEE-EEEEEe
Confidence 38999999999999973221 1111 123333334433 1111111121 23331 1222 33344
Q ss_pred --eCCCCeEEEEEEccCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 99 --DDEEHVLRVRIIGGDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 99 --D~~~~~~~Y~i~~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
++..+..+|++.-...|+ ...+++.|.|.+ ++|++++...-.. .+| +-...+.+++...+...|+...+..
T Consensus 83 ~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~-~gt~~~~~g~v~v-~VP--lvGgkiE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 83 PLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDG-GGTRLTVEGEVKV-KVP--LVGGKIEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred cCCCCeEEEEEEEEecCceE-EEEEEEEEecCC-CCEEEEEEEEEEE-EEc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667664333466 678999999955 6785555543321 233 2223345555555555555555443
No 55
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.04 E-value=0.64 Score=37.79 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred eeecCCHHHHHHHHhcCCCC--cccCccceEEEE-ec-CCCCCeEEEEEec-C-C---CCcccEE-EEEEEEeCCCCeEE
Q 029721 37 KHIRAPVHLVWSLVRRFDQP--QKYKPFVSRCVA-QG-NLEIGSLREVDVK-S-G---LPATTST-ERLELLDDEEHVLR 106 (189)
Q Consensus 37 ~~I~Ap~d~VW~vl~df~~~--~~W~P~v~s~~~-eG-~~~vG~vR~~~~~-~-g---~p~~~~~-ErL~~~D~~~~~~~ 106 (189)
.+|++++++|++++-|..+. ++|.+.+.++++ +- +....-++. ..+ . + .|+..+. ......++....+.
T Consensus 52 ~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~ 130 (208)
T cd08903 52 GIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTISSN 130 (208)
T ss_pred EEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEEEe
Confidence 38899999999999887654 799999999885 42 211222332 221 1 1 1112222 22223333222223
Q ss_pred EEEEccC-c-cceeE--------EEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 107 VRIIGGD-H-RLKNY--------SSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 107 Y~i~~g~-~-p~~~y--------~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+..++.+ . |-++| ...++..|.++++|.++|... .|+-..+....+-.++......-|.+|++.+.+
T Consensus 131 ~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~---~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 131 ATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQ---TDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEE---eccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 3233331 1 22222 223343443555675555543 354333345556666766667888899988754
No 56
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=95.91 E-value=0.56 Score=38.36 Aligned_cols=138 Identities=7% Similarity=-0.083 Sum_probs=80.9
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCC-CCCeEEEEEec-CCCCcccEEEEEEEEeCCCC
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNL-EIGSLREVDVK-SGLPATTSTERLELLDDEEH 103 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~-~vG~vR~~~~~-~g~p~~~~~ErL~~~D~~~~ 103 (189)
..+...+ +|++++++|...+-|. .+.|-+.+..+.+ + +++ .++-.+ +... +-.+...+.-|.-..+..+.
T Consensus 52 ~~~r~~~--~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~-~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTI--EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYV-QNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEE--EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEE-ccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 3456666 8899999999999776 6799998877764 3 222 111111 1111 11111222222333334433
Q ss_pred eEEEEEE---ccCcc-----ceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 104 VLRVRII---GGDHR-----LKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 104 ~~~Y~i~---~g~~p-----~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.+...+. ....| ...+.+-+.++|.++++|.+|++.+. | |.|.....+......+...-|..|++-|.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~---D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRI---D-LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEe---C-CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 3322222 11123 34556678899998788877776643 3 55655666677778888888888888764
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.85 E-value=0.78 Score=37.23 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=79.7
Q ss_pred ee-cCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeE-EEEEecCCCC---cccEEEEEEEEeCCCCeE---EEE
Q 029721 38 HI-RAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSL-REVDVKSGLP---ATTSTERLELLDDEEHVL---RVR 108 (189)
Q Consensus 38 ~I-~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~v-R~~~~~~g~p---~~~~~ErL~~~D~~~~~~---~Y~ 108 (189)
++ ++|++.+.+++.|.+...+|-+.+.++++ +-+...+.. -.+.++---| +..+.-+-...|+++..+ .++
T Consensus 52 ~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~s 131 (207)
T cd08911 52 SFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKA 131 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEec
Confidence 45 99999999999999888999999888875 432212221 2222221111 123444444566654432 122
Q ss_pred EEc-------cCccceeEEEEEEEEeee---CCCceEEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 109 IIG-------GDHRLKNYSSIISLHSEI---IDGRMGTLVLESFVVDVPEG-NTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 109 i~~-------g~~p~~~y~ati~v~p~~---~~gt~vt~~~~~~~~d~p~~-~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+.. |-..+..|.+-+.+.|.+ +++|.++++ +. .+ |.| +....+..+....+-..|++|++++.+
T Consensus 132 v~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~--~~-~d-PgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 132 VQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLT--YF-DN-PGVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEE--EE-eC-CCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 221 112456888899999873 457744433 22 24 333 334455667777778888888887643
No 58
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.68 E-value=0.89 Score=36.68 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=71.5
Q ss_pred eecCCHHHHHH-HHhcCCCCcccCccceEEEE-ec-CCCCCeEEEEEecC-CCC---cccEEEEEEEEeCCCCeEEEEEE
Q 029721 38 HIRAPVHLVWS-LVRRFDQPQKYKPFVSRCVA-QG-NLEIGSLREVDVKS-GLP---ATTSTERLELLDDEEHVLRVRII 110 (189)
Q Consensus 38 ~I~Ap~d~VW~-vl~df~~~~~W~P~v~s~~~-eG-~~~vG~vR~~~~~~-g~p---~~~~~ErL~~~D~~~~~~~Y~i~ 110 (189)
.|++|+++|+. ++.|....++|.+.+..+++ +. ++..--++.+.... +.| +..+--|-...++....+...-+
T Consensus 55 ~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv 134 (208)
T cd08868 55 VLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGVSV 134 (208)
T ss_pred EEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEEec
Confidence 88999999986 56788999999999988874 42 11111122222111 111 12222233333443222222222
Q ss_pred cc-Cc-------cceeEEEEEEEEeeeC--CCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029721 111 GG-DH-------RLKNYSSIISLHSEII--DGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISER 176 (189)
Q Consensus 111 ~g-~~-------p~~~y~ati~v~p~~~--~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~ 176 (189)
+- .. ....+.+-+.++|.++ +.|.+++.... |+-.......+-.++....-..+++|++++++
T Consensus 135 ~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~---Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 135 EHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNT---DLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred cCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEE---CCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 21 11 2335557788999764 45655555433 42111122233344555566678888888765
No 59
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.65 E-value=0.74 Score=35.55 Aligned_cols=111 Identities=16% Similarity=0.013 Sum_probs=60.9
Q ss_pred CceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCC---cccEEEEEEEEeCCCC
Q 029721 28 DHQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLP---ATTSTERLELLDDEEH 103 (189)
Q Consensus 28 ~~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p---~~~~~ErL~~~D~~~~ 103 (189)
...+.... +|++|+++||+++.|....+.|.+.+.++++ +-....-.+....+....| +..+--+-...++++.
T Consensus 38 ~~~~k~~~--~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~ 115 (193)
T cd00177 38 LKLLKAEG--VIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT 115 (193)
T ss_pred ceeEEEEE--EECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence 44555556 8899999999999998888999999988875 4211112333333432222 1122222222333221
Q ss_pred -eEEEEEEccC-cc-------ceeEEEEEEEEeeeCCCceEEEEEE
Q 029721 104 -VLRVRIIGGD-HR-------LKNYSSIISLHSEIIDGRMGTLVLE 140 (189)
Q Consensus 104 -~~~Y~i~~g~-~p-------~~~y~ati~v~p~~~~gt~vt~~~~ 140 (189)
.+...-++.+ .| ...+.+-+.+.|.++++|.++++..
T Consensus 116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~ 161 (193)
T cd00177 116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQ 161 (193)
T ss_pred EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEe
Confidence 1111112221 11 2233456788888767786666654
No 60
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.30 E-value=1.3 Score=35.96 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=75.5
Q ss_pred ee-cCCHHHHHHHHhcCCCCcccCccceEEEE-ecCC--CCCeEEEEEecCCCC---cccEEEEEEEEe-CCCCeEEEEE
Q 029721 38 HI-RAPVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNL--EIGSLREVDVKSGLP---ATTSTERLELLD-DEEHVLRVRI 109 (189)
Q Consensus 38 ~I-~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~--~vG~vR~~~~~~g~p---~~~~~ErL~~~D-~~~~~~~Y~i 109 (189)
++ ++|++.+.+++.|....++|-+.+..+++ +-+. +.--++. .++---| +..+--+-...| +....+....
T Consensus 57 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~-~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~s 135 (209)
T cd08870 57 VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRW-VKKFPFPLSDREYVIARRLWESDDRSYVCVTKG 135 (209)
T ss_pred EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEE-EEECCCcCCCceEEEEEEEEEcCCCEEEEEEeC
Confidence 66 77999999999998888999999888774 3221 1121222 2211111 122322323333 2222222222
Q ss_pred Ecc-------CccceeEEEEEEEEee--eCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 110 IGG-------DHRLKNYSSIISLHSE--IIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 110 ~~g-------~~p~~~y~ati~v~p~--~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
+.. -..+..|.+.+.+.|. ++++|.++++... ++-..+....+..++....-..|++|++++.
T Consensus 136 v~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~---dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 136 VPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFH---NPDGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred CcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEE---CCCCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 221 1235688889999998 6566755555432 4333344555566666666677778877764
No 61
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=95.03 E-value=0.43 Score=39.23 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=64.4
Q ss_pred eeecCCHHHHHHHHhcCCCCcccCccceEEEEe--cCCCCCeEEEEEecCCCCc--ccEEEEEEEEeCCCCeEEEEEE-c
Q 029721 37 KHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQ--GNLEIGSLREVDVKSGLPA--TTSTERLELLDDEEHVLRVRII-G 111 (189)
Q Consensus 37 ~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~e--G~~~vG~vR~~~~~~g~p~--~~~~ErL~~~D~~~~~~~Y~i~-~ 111 (189)
+.|+.+++++++++++...++.+.|.++++++. +. .-+..-.+.+ |.|. .....+++-.+|. ++|.+. +
T Consensus 74 rligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeV--GFk~l~E~y~S~Vt~~~p~---l~kt~~~d 147 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEV--GFKPLDERYTSNVTCVKPH---LTKTVCAD 147 (227)
T ss_pred hhhCCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEe--cCcccchhheeeeEEeccc---ceEEeecc
Confidence 368999999999999999999999999999873 32 1233333333 4331 2345566555442 556553 4
Q ss_pred cCccceeEEEEEEEEeee--CCCceEEEEEEEEE
Q 029721 112 GDHRLKNYSSIISLHSEI--IDGRMGTLVLESFV 143 (189)
Q Consensus 112 g~~p~~~y~ati~v~p~~--~~gt~vt~~~~~~~ 143 (189)
|.+ +..-...|++.|.. .+.|.+.+...+++
T Consensus 148 ~rL-F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF 180 (227)
T KOG3177|consen 148 GRL-FNHLITIWSFKPGPNIPRTCTLDFSVSFEF 180 (227)
T ss_pred ccH-HHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence 533 33444568998876 45666666666654
No 62
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=93.95 E-value=2.8 Score=33.99 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=75.8
Q ss_pred eEEEEEeeeec-CCHHHHHHHHhcCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCC---cccE-EEEEEEEeCCCC
Q 029721 30 QCSSVLKKHIR-APVHLVWSLVRRFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLP---ATTS-TERLELLDDEEH 103 (189)
Q Consensus 30 ~v~~sv~~~I~-Ap~d~VW~vl~df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p---~~~~-~ErL~~~D~~~~ 103 (189)
.+.... +++ ++++.+.+++-|....++|.+.+.++.. +.++ -.+-.+.++.--| +..+ .-+...+|....
T Consensus 50 ~~k~~~--~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~ 125 (207)
T cd08910 50 EYKVFG--VLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGR 125 (207)
T ss_pred EEEEEE--EEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCC
Confidence 344344 666 7999999999999988999998765422 2222 1122222321111 1122 212233444333
Q ss_pred eEEE---EEEc--------cCccceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHH
Q 029721 104 VLRV---RIIG--------GDHRLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEG-NTKDETCYFVEALIKCNLKSLA 171 (189)
Q Consensus 104 ~~~Y---~i~~--------g~~p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~-~~~~~~~~~~~~~~~~~L~~L~ 171 (189)
.+.. ..++ |-..+..|.+.+.++|.++++|.++++.. .| |.| .....+..+....+...|++|+
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~---~D-PgG~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYF---DN-PGGMIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEE---eC-CCCcchHHHHHHHHHHhhHHHHHHHH
Confidence 2111 1111 11245688899999998877786555543 24 333 2344555666666777778887
Q ss_pred HHHH
Q 029721 172 DISE 175 (189)
Q Consensus 172 ~~~e 175 (189)
+++.
T Consensus 202 ka~~ 205 (207)
T cd08910 202 KACQ 205 (207)
T ss_pred HHHh
Confidence 7764
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.92 E-value=3.3 Score=34.72 Aligned_cols=107 Identities=10% Similarity=0.109 Sum_probs=61.5
Q ss_pred eEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecCCCCcccEEEEEE---E--EeCC
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKSGLPATTSTERLE---L--LDDE 101 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~g~p~~~~~ErL~---~--~D~~ 101 (189)
.+...+ .+++|++++.+++.|....+.|.+.+.++++ + +++.- ++.+.-..-.|. .=++=++ . ..+.
T Consensus 79 ~fk~e~--~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~--vY~~~~pPw~Pv-k~RD~V~~~s~~~~~~d 153 (236)
T cd08914 79 SVWVEK--HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ--IYHITCPIVNND-KPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEE--EEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC--EEEEecCCCCCC-CCceEEEEEEEEecCCC
Confidence 455555 8899999999999999999999999999985 3 33322 555432111011 1122111 1 1212
Q ss_pred CCeEE--EEEEcc-Cc-------ccee-EEEEEEEEeeeCCCceEEEEEEEE
Q 029721 102 EHVLR--VRIIGG-DH-------RLKN-YSSIISLHSEIIDGRMGTLVLESF 142 (189)
Q Consensus 102 ~~~~~--Y~i~~g-~~-------p~~~-y~ati~v~p~~~~gt~vt~~~~~~ 142 (189)
+..+. ..-+.. .+ .... ..+. .+.|.++++|.+|+..+..
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~d 204 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQIS 204 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcC
Confidence 22232 222222 12 2334 3444 8899887889888877643
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.66 E-value=3.1 Score=33.45 Aligned_cols=140 Identities=9% Similarity=-0.098 Sum_probs=73.0
Q ss_pred eEEEEEeeeecCCHHHHHHHHhc--CCCCcccCccceEEEE-ecCCCCCeEEEEEecC-CC----CcccE-EEEEEEEeC
Q 029721 30 QCSSVLKKHIRAPVHLVWSLVRR--FDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKS-GL----PATTS-TERLELLDD 100 (189)
Q Consensus 30 ~v~~sv~~~I~Ap~d~VW~vl~d--f~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~-g~----p~~~~-~ErL~~~D~ 100 (189)
.+.... +|++++++|..++.| .....+|.+.+..|++ +.-+..=.+-+...+. +. ++..+ .+....+++
T Consensus 47 ~~k~~~--~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 47 LYRAEG--IVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEE--EEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 355555 889999999999998 6667899999989875 4311011111122211 01 11121 222233443
Q ss_pred CCCeEEEEEEccC--ccce------eEEEEEEEEeee--CCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029721 101 EEHVLRVRIIGGD--HRLK------NYSSIISLHSEI--IDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSL 170 (189)
Q Consensus 101 ~~~~~~Y~i~~g~--~p~~------~y~ati~v~p~~--~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L 170 (189)
....+...-++.+ +|.+ .+.+-+-+.|.+ +++|.++|+.. .|+-.......+-.++....-.-+++|
T Consensus 125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~---~DpkG~iP~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQ---TDLRGMIPQSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEE---eccCCCCcHHHHHhhhhhhHHHHHHHH
Confidence 2222232333222 1222 333445677754 34565555543 254334445555566666666777777
Q ss_pred HHHH
Q 029721 171 ADIS 174 (189)
Q Consensus 171 ~~~~ 174 (189)
++++
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 7764
No 65
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.57 E-value=3 Score=33.03 Aligned_cols=137 Identities=10% Similarity=-0.081 Sum_probs=74.3
Q ss_pred eecCCHHH-HHHHHhcCCCCcccCccceEEEE-ec-CCCCCeEEEEEecCCC-C---cccEEEEEEEEeCC-CCeEEEEE
Q 029721 38 HIRAPVHL-VWSLVRRFDQPQKYKPFVSRCVA-QG-NLEIGSLREVDVKSGL-P---ATTSTERLELLDDE-EHVLRVRI 109 (189)
Q Consensus 38 ~I~Ap~d~-VW~vl~df~~~~~W~P~v~s~~~-eG-~~~vG~vR~~~~~~g~-p---~~~~~ErL~~~D~~-~~~~~Y~i 109 (189)
.|.+++++ +=.++.|....+.|.+.+..+++ +- +. -..+..+....-. | +..+--+-...++. ...+...-
T Consensus 52 ~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~-~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~S 130 (206)
T smart00234 52 VVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDN-GTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVS 130 (206)
T ss_pred EEecChHHHHHHHHhcccchhhCchhcccEEEEEEECC-CCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEE
Confidence 77888887 55678898888999999988874 32 11 1234433332111 2 12222222223332 22333322
Q ss_pred EccC-c-------cceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029721 110 IGGD-H-------RLKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISERHA 178 (189)
Q Consensus 110 ~~g~-~-------p~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e~~~ 178 (189)
++.+ . ....+.+-+.++|.+++.|.+||.... |+-.......+..++.......+..|++.+.+.+
T Consensus 131 v~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~---D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T smart00234 131 VTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHA---DLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHC 204 (206)
T ss_pred CCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEE---ecCCCccceeehhhhhhhHHHHHHHHHHHHHHHh
Confidence 2221 1 234566778999988777877776654 3211112233445555556666777777766554
No 66
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=93.52 E-value=3.5 Score=33.64 Aligned_cols=132 Identities=6% Similarity=-0.077 Sum_probs=72.0
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEE-e--c-CCCCCeEEEEEec--CC--CCcccEEEEEE-EEeCCCCeEEEE
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--G-NLEIGSLREVDVK--SG--LPATTSTERLE-LLDDEEHVLRVR 108 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G-~~~vG~vR~~~~~--~g--~p~~~~~ErL~-~~D~~~~~~~Y~ 108 (189)
+|++++++||+++.+.....+|.+.+..+++ + + +.-+. +..+.. .+ .|+..+-=|-. .++.....+.+.
T Consensus 53 vi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~--~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~ 130 (204)
T cd08904 53 IIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFIC--HTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSV 130 (204)
T ss_pred EecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEE--EEecccccCCcccCceEEEEEEEEEeCCCEEEEEEE
Confidence 8899999999999987667899999988874 4 2 22111 111111 11 12222222222 234433233333
Q ss_pred EEccCc--cce------eEEEEEEEEeeeCC--CceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 109 IIGGDH--RLK------NYSSIISLHSEIID--GRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 109 i~~g~~--p~~------~y~ati~v~p~~~~--gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
.++.+- |-+ ++.+=+-+.|..++ +|..+|... .|+-..+....+..+|...+-.-+.+|++.+
T Consensus 131 sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~---~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 131 SVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQ---PELRGNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred ecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEE---eCCCCCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 344322 323 33344678887654 564444443 3544444455666667776666777777654
No 67
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=91.91 E-value=4.8 Score=31.13 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCHHHHHHHHh-cCCCCcccCccceEEEE-ecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEEc
Q 029721 41 APVHLVWSLVR-RFDQPQKYKPFVSRCVA-QGNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRIIG 111 (189)
Q Consensus 41 Ap~d~VW~vl~-df~~~~~W~P~v~s~~~-eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~~ 111 (189)
-..+++|.-|- .-.....+.|.|.+|++ +.++ ---.|.++|+.. .++|+++.. +. .++.|.+..
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt~~-~~-~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGPA----KIRETVTLE-PP-SRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECCc----eEEEEEEec-CC-cEEEEEecC
Confidence 45789999875 56667789999999996 4322 134599999554 699998754 43 579998865
No 68
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=86.78 E-value=11 Score=27.99 Aligned_cols=94 Identities=6% Similarity=-0.039 Sum_probs=58.7
Q ss_pred EeeeecCCHHHHHHHHhcCCCCcccCccceEEE---Ee-cCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCCeEEEEEE
Q 029721 35 LKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV---AQ-GNLEIGSLREVDVKSGLPATTSTERLELLDDEEHVLRVRII 110 (189)
Q Consensus 35 v~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~---~e-G~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~~~~Y~i~ 110 (189)
|++++++|++.+++.|-+--- ..|.... +. ... .|....-.+..+. ..+=+|+++.+. +.|.+.+.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~-----~DI~~~tgk~~~~~~L-~G~~Y~K~~~~~~---~~~v~It~~~~~-~~Y~~~~~ 72 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLL-----YDIKQATGKKLPVKQL-KGFSYQKKFKNKR---EAKVKITEYEPN-KRYAATFS 72 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHH-----HHHHHHcCCCCChhhc-CCcEEEEEcCCCC---EEEEEEEEEcCC-CEEEEEEE
Confidence 456889999999999875110 1111111 10 112 4555544554543 455568999885 77888875
Q ss_pred ccCccceeEEEEEEEEeeeCCCceEEEEEEE
Q 029721 111 GGDHRLKNYSSIISLHSEIIDGRMGTLVLES 141 (189)
Q Consensus 111 ~g~~p~~~y~ati~v~p~~~~gt~vt~~~~~ 141 (189)
. +...+..+.++.|.+++.|.|++....
T Consensus 73 s---~~~~~~i~Y~i~~~~~~~~~v~y~E~~ 100 (120)
T PF11687_consen 73 S---SRGTFTISYEIEPLDDGSIEVTYEEEY 100 (120)
T ss_pred e---cCCCEEEEEEEEECCCCcEEEEEEEEE
Confidence 4 344677788999999777877776543
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=85.35 E-value=16 Score=28.66 Aligned_cols=140 Identities=13% Similarity=-0.031 Sum_probs=77.1
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeEEEEEecCCC--CcccEEE----EEEEEe
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSLREVDVKSGL--PATTSTE----RLELLD 99 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~vR~~~~~~g~--p~~~~~E----rL~~~D 99 (189)
..+.... .|+++++++...+-+-.. .|.+.+..+++ + .++ ..+..+.+.... |.. -+| +....+
T Consensus 46 ~~~k~~~--~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~-~RDfv~~~~~~~~ 118 (206)
T PF01852_consen 46 KMFKAEG--VVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVS-PRDFVFLRSWRKD 118 (206)
T ss_dssp EEEEEEE--EESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSS-EEEEEEEEEEEEC
T ss_pred eEEEEEE--EEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCC-CcEEEEEEEEEEe
Confidence 3344445 889999977777665333 89999988874 3 222 344444443322 321 133 222223
Q ss_pred CCC-CeEEEEEEc-cCc-c-------ceeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 029721 100 DEE-HVLRVRIIG-GDH-R-------LKNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKS 169 (189)
Q Consensus 100 ~~~-~~~~Y~i~~-g~~-p-------~~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~ 169 (189)
..+ ..+..+=++ ... + ...|.+-+.++|.+++.|.++++... |+-.......+..++.......++.
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~---D~~G~iP~~~~n~~~~~~~~~~~~~ 195 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQV---DPKGWIPSWLVNMVVKSQPPNFLKN 195 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEE---ESSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEE---CCCCCChHHHHHHHHHHhHHHHHHH
Confidence 332 233332222 211 2 34666778999998766877777543 4322222344456666666777777
Q ss_pred HHHHHHhhh
Q 029721 170 LADISERHA 178 (189)
Q Consensus 170 L~~~~e~~~ 178 (189)
|++.+++..
T Consensus 196 ~~~~~~~~~ 204 (206)
T PF01852_consen 196 LRKALKKQK 204 (206)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhc
Confidence 777777643
No 70
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=15 Score=31.78 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=67.0
Q ss_pred EEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEEecCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCC-eEEEEE
Q 029721 31 CSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVAQGNLEIGSLREVDVKSGLPATTSTERLELLDDEEH-VLRVRI 109 (189)
Q Consensus 31 v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~eG~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~-~~~Y~i 109 (189)
...+++.+++++++++++++.|...+..|..... +++.+. -|.--.+ +|. +.-+++++.++++ .+.|++
T Consensus 173 ~di~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~~-~g~f~lf---~Gn----Vtg~~~~~e~~K~Iv~kWrl 242 (301)
T KOG2936|consen 173 ADISLSATFNCRVDELYEIFLDPERVKAWTRSPA--ELEADP-GGKFSLF---DGN----VTGEFLELEKNKKIVMKWRL 242 (301)
T ss_pred ccceehhhcCCCHHHHHHHHhcHHHHHHhcCChh--hcccCC-CCceEEe---ccc----ceeeeeeecCCCeEEEEEec
Confidence 3444555899999999999999998888965322 344321 1333322 663 4555666666543 346777
Q ss_pred EccCccceeEEEEEEEEeeeC-CCceEEEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 029721 110 IGGDHRLKNYSSIISLHSEII-DGRMGTLVLESFVVDVPEGNTKDETCYFVEALI 163 (189)
Q Consensus 110 ~~g~~p~~~y~ati~v~p~~~-~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~ 163 (189)
-+ -|- .+.|||.+++... +.|.+++.+. ++|.+.. +-++.-.+..|
T Consensus 243 ~~--Wp~-~~~atI~~~f~~~~~~t~l~~~~k----gVP~~ee-e~~~~~wq~yy 289 (301)
T KOG2936|consen 243 KS--WPD-GHDATITLTFYESQGETKLQVKQK----GVPIGEE-ENTRQGWQEYY 289 (301)
T ss_pred cc--CCC-CccceEEEEEecCCCceEEEEEec----CCCcchh-HHHHhhHHHHh
Confidence 43 232 4567888877653 4575555543 5666642 33333344433
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=68.94 E-value=63 Score=26.41 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=77.0
Q ss_pred ceEEEEEeeeecCCHHHHHHHHhcCCCCcccCccceEEEE-e---cCCCCCeEEEEEecCCCCcccEEEEEEEEeCCCC-
Q 029721 29 HQCSSVLKKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q---GNLEIGSLREVDVKSGLPATTSTERLELLDDEEH- 103 (189)
Q Consensus 29 ~~v~~sv~~~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e---G~~~vG~vR~~~~~~g~p~~~~~ErL~~~D~~~~- 103 (189)
.....++ +|++|+++|=..+-+ .-+.|-..+....+ + ++..++-.+.-.+..-.+...+.-|--..|...-
T Consensus 52 k~~r~~~--ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~ 127 (205)
T cd08909 52 RLWKVSV--EVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGA 127 (205)
T ss_pred EEEEEEE--EeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCc
Confidence 3555566 899999999777755 46689887766653 3 2222333222111101111233334333343222
Q ss_pred -eEEEEEEccC-ccce------eEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 104 -VLRVRIIGGD-HRLK------NYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADISE 175 (189)
Q Consensus 104 -~~~Y~i~~g~-~p~~------~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~e 175 (189)
.+.+.-++.+ .|.. .+.+-+.++|.++++|.+++..+ .| |.|-......+.+..+...-|..|++-|.
T Consensus 128 ~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~---vD-pkG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 128 CSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICR---VD-LKGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred EEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEE---ec-CCCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2222222222 1222 33445688999877787766654 24 55656666777788888888888887664
No 72
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=65.68 E-value=74 Score=26.07 Aligned_cols=132 Identities=8% Similarity=-0.072 Sum_probs=68.1
Q ss_pred eecCCHHHHHHHHhcCCCCcccCccceEEEE-e--cCCCCCeE-EEEEecCCC----CcccEE-EEEEEEeCCCCeEEEE
Q 029721 38 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVA-Q--GNLEIGSL-REVDVKSGL----PATTST-ERLELLDDEEHVLRVR 108 (189)
Q Consensus 38 ~I~Ap~d~VW~vl~df~~~~~W~P~v~s~~~-e--G~~~vG~v-R~~~~~~g~----p~~~~~-ErL~~~D~~~~~~~Y~ 108 (189)
.|+..+++||..+.+-....+|.+.+++|++ + +++ -++ |.++.+... |+..+- -+...+.+ .+ ++-.
T Consensus 54 vv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d--t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d-~~-~s~g 129 (202)
T cd08902 54 VVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN--CCVMRYTTAGQLLNIISPREFVDFSYTTQYED-GL-LSCG 129 (202)
T ss_pred EecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC--cEEEEEEcccCCcCccCccceEEEEEEEEeCC-Ce-EEEE
Confidence 6789999999999886667799999999985 4 333 223 444433221 222221 11222322 22 2222
Q ss_pred E--EccCcc--c---eeEEEEEEEEeeeCCCceEEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029721 109 I--IGGDHR--L---KNYSSIISLHSEIIDGRMGTLVLESFVVDVPEGNTKDETCYFVEALIKCNLKSLADIS 174 (189)
Q Consensus 109 i--~~g~~p--~---~~y~ati~v~p~~~~gt~vt~~~~~~~~d~p~~~~~~~~~~~~~~~~~~~L~~L~~~~ 174 (189)
+ .-...| + .++-+-+-+.|..++-+.++++|-.. .|+-..+....+..+|..-.-.-+.+|++++
T Consensus 130 vs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq-~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 130 VSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQ-TDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred eeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEE-ecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 2 111112 1 23334467888775534334554322 4544344444555555555555556666543
No 73
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=36.58 E-value=2.4e+02 Score=23.24 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=27.5
Q ss_pred eec-CCHHHHHHHHhcCCCCcccCccceEEEE
Q 029721 38 HIR-APVHLVWSLVRRFDQPQKYKPFVSRCVA 68 (189)
Q Consensus 38 ~I~-Ap~d~VW~vl~df~~~~~W~P~v~s~~~ 68 (189)
++. ++++++.+++.|......|-..+.++++
T Consensus 59 ~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~v 90 (235)
T cd08872 59 AVKGVTGHEVCHYFFDPDVRMDWETTLENFHV 90 (235)
T ss_pred EECCCCHHHHHHHHhChhhHHHHHhhhheeEE
Confidence 666 9999999999999998999999888874
Done!