Query 029723
Match_columns 189
No_of_seqs 347 out of 1177
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 2.1E-29 4.5E-34 212.7 8.5 121 69-189 15-150 (258)
2 COG1126 GlnQ ABC-type polar am 99.9 7.7E-28 1.7E-32 197.7 8.6 119 71-189 17-148 (240)
3 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2E-27 4.3E-32 200.1 8.9 117 70-189 18-151 (254)
4 COG3839 MalK ABC-type sugar tr 99.9 3.3E-27 7.1E-32 206.0 8.9 117 71-189 18-145 (338)
5 COG1136 SalX ABC-type antimicr 99.9 4E-27 8.8E-32 195.4 8.6 121 69-189 18-154 (226)
6 COG1116 TauB ABC-type nitrate/ 99.9 3E-27 6.4E-32 197.6 7.8 116 69-189 16-142 (248)
7 COG3842 PotA ABC-type spermidi 99.9 4.3E-27 9.4E-32 206.3 8.2 119 69-189 18-148 (352)
8 COG1135 AbcC ABC-type metal io 99.9 7.9E-27 1.7E-31 200.0 8.4 121 69-189 19-153 (339)
9 COG1125 OpuBA ABC-type proline 99.9 8.5E-27 1.8E-31 195.7 8.3 121 69-189 14-147 (309)
10 COG3638 ABC-type phosphate/pho 99.9 3.4E-26 7.5E-31 189.9 8.4 119 71-189 19-159 (258)
11 COG1118 CysA ABC-type sulfate/ 99.9 5.7E-26 1.2E-30 194.6 8.7 119 69-189 15-149 (345)
12 COG2884 FtsE Predicted ATPase 99.9 9.1E-26 2E-30 182.5 7.9 121 69-189 15-149 (223)
13 COG1122 CbiO ABC-type cobalt t 99.9 1.4E-25 3E-30 187.7 7.8 121 69-189 17-150 (235)
14 COG3840 ThiQ ABC-type thiamine 99.9 3.7E-25 8E-30 178.2 7.2 108 80-189 24-141 (231)
15 COG1131 CcmA ABC-type multidru 99.9 6.7E-25 1.5E-29 188.7 7.9 120 69-189 18-148 (293)
16 TIGR02314 ABC_MetN D-methionin 99.9 9.7E-25 2.1E-29 191.5 8.2 120 70-189 19-152 (343)
17 PRK11650 ugpC glycerol-3-phosp 99.9 1.8E-24 3.8E-29 190.7 9.0 117 71-189 19-146 (356)
18 TIGR01186 proV glycine betaine 99.9 1.6E-24 3.4E-29 191.5 8.7 119 71-189 8-141 (363)
19 cd03261 ABC_Org_Solvent_Resist 99.9 2.3E-24 4.9E-29 178.5 8.5 119 71-189 15-148 (235)
20 TIGR01166 cbiO cobalt transpor 99.9 3.5E-24 7.5E-29 172.1 9.2 119 71-189 7-139 (190)
21 COG1124 DppF ABC-type dipeptid 99.9 3E-24 6.4E-29 178.9 8.6 119 70-189 21-153 (252)
22 COG1127 Ttg2A ABC-type transpo 99.9 2.3E-24 5E-29 179.5 7.9 120 70-189 22-157 (263)
23 cd03225 ABC_cobalt_CbiO_domain 99.9 4.2E-24 9.2E-29 173.9 8.9 119 71-189 16-146 (211)
24 TIGR00960 3a0501s02 Type II (G 99.9 3.1E-24 6.7E-29 175.4 7.6 119 71-189 18-150 (216)
25 PRK09536 btuD corrinoid ABC tr 99.9 5.1E-24 1.1E-28 190.5 9.1 120 70-189 17-151 (402)
26 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 5.6E-24 1.2E-28 173.9 8.3 119 71-189 19-152 (218)
27 TIGR01188 drrA daunorubicin re 99.9 5.7E-24 1.2E-28 183.0 8.7 118 71-189 8-136 (302)
28 PRK11432 fbpC ferric transport 99.9 5.9E-24 1.3E-28 187.1 8.9 117 71-189 21-148 (351)
29 cd03265 ABC_DrrA DrrA is the A 99.9 5.9E-24 1.3E-28 174.4 8.0 118 71-189 15-143 (220)
30 TIGR03265 PhnT2 putative 2-ami 99.9 5.4E-24 1.2E-28 187.4 8.1 117 71-189 19-146 (353)
31 COG4604 CeuD ABC-type enteroch 99.9 6.1E-24 1.3E-28 173.0 7.8 110 80-189 26-147 (252)
32 PRK13650 cbiO cobalt transport 99.9 9.2E-24 2E-28 179.9 9.3 119 71-189 22-152 (279)
33 PRK13647 cbiO cobalt transport 99.9 1.1E-23 2.4E-28 179.0 9.3 119 71-189 20-150 (274)
34 cd03259 ABC_Carb_Solutes_like 99.9 9.7E-24 2.1E-28 172.1 8.3 117 71-189 15-142 (213)
35 TIGR02673 FtsE cell division A 99.9 1.4E-23 3E-28 171.1 9.1 119 71-189 17-149 (214)
36 cd03219 ABC_Mj1267_LivG_branch 99.9 1.2E-23 2.6E-28 173.9 8.7 119 71-189 15-155 (236)
37 PRK10851 sulfate/thiosulfate t 99.9 1E-23 2.3E-28 185.6 8.8 117 71-189 17-148 (353)
38 PRK13537 nodulation ABC transp 99.9 1E-23 2.2E-28 182.1 8.6 119 70-189 21-150 (306)
39 cd03256 ABC_PhnC_transporter A 99.9 2.2E-23 4.7E-28 172.6 9.7 119 71-189 16-156 (241)
40 cd03226 ABC_cobalt_CbiO_domain 99.9 1.4E-23 3.1E-28 170.4 8.3 113 71-189 15-138 (205)
41 PRK09452 potA putrescine/sperm 99.9 1.2E-23 2.7E-28 186.5 8.6 117 71-189 29-156 (375)
42 PRK11629 lolD lipoprotein tran 99.9 1.6E-23 3.4E-28 173.4 8.5 119 71-189 24-157 (233)
43 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-23 3.1E-28 171.9 8.1 119 71-189 20-153 (221)
44 TIGR02315 ABC_phnC phosphonate 99.9 2.8E-23 6.1E-28 172.4 9.9 119 71-189 17-157 (243)
45 PRK13637 cbiO cobalt transport 99.9 1.7E-23 3.8E-28 178.9 8.8 120 70-189 21-156 (287)
46 cd03292 ABC_FtsE_transporter F 99.9 1.8E-23 3.9E-28 170.3 8.4 119 71-189 16-148 (214)
47 PRK10908 cell division protein 99.9 2.1E-23 4.7E-28 171.3 8.8 119 71-189 17-149 (222)
48 COG4619 ABC-type uncharacteriz 99.9 7.2E-24 1.6E-28 169.1 5.4 127 63-189 10-145 (223)
49 PRK11153 metN DL-methionine tr 99.9 1.8E-23 3.9E-28 183.3 8.3 119 71-189 20-152 (343)
50 cd03262 ABC_HisP_GlnQ_permease 99.9 3E-23 6.5E-28 168.9 9.1 119 71-189 15-147 (213)
51 cd03258 ABC_MetN_methionine_tr 99.9 2.7E-23 6E-28 171.6 8.9 120 70-189 19-152 (233)
52 PRK13635 cbiO cobalt transport 99.9 3.2E-23 6.8E-28 176.7 9.5 119 71-189 22-152 (279)
53 PRK11607 potG putrescine trans 99.9 1.9E-23 4.2E-28 185.4 8.4 117 71-189 34-161 (377)
54 cd03266 ABC_NatA_sodium_export 99.9 1.7E-23 3.7E-28 171.1 7.5 119 70-189 19-148 (218)
55 COG4559 ABC-type hemin transpo 99.9 3.1E-23 6.8E-28 170.4 8.7 118 72-189 17-147 (259)
56 PRK11000 maltose/maltodextrin 99.9 2.4E-23 5.1E-28 184.2 8.6 117 71-189 18-145 (369)
57 COG4175 ProV ABC-type proline/ 99.9 2.6E-23 5.6E-28 179.1 8.4 121 69-189 41-176 (386)
58 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.9E-23 8.5E-28 171.9 9.1 119 71-189 16-147 (242)
59 COG0410 LivF ABC-type branched 99.9 2.1E-23 4.5E-28 172.7 7.3 121 69-189 16-148 (237)
60 PRK13632 cbiO cobalt transport 99.9 3.7E-23 8E-28 175.3 9.0 120 70-189 23-154 (271)
61 PRK13644 cbiO cobalt transport 99.9 4E-23 8.7E-28 175.5 9.3 119 71-189 17-148 (274)
62 PRK13536 nodulation factor exp 99.9 2.7E-23 5.8E-28 182.2 8.4 119 70-189 55-184 (340)
63 PRK13634 cbiO cobalt transport 99.9 3.4E-23 7.3E-28 177.4 8.8 119 71-189 22-157 (290)
64 cd03263 ABC_subfamily_A The AB 99.9 2.6E-23 5.6E-28 170.2 7.6 118 71-189 17-145 (220)
65 cd03235 ABC_Metallic_Cations A 99.9 3.7E-23 8.1E-28 168.7 8.4 114 71-189 14-144 (213)
66 PRK15079 oligopeptide ABC tran 99.9 2.8E-23 6.1E-28 181.4 8.2 121 69-189 34-173 (331)
67 PRK13646 cbiO cobalt transport 99.9 4.2E-23 9.1E-28 176.4 9.1 119 71-189 22-157 (286)
68 PRK10584 putative ABC transpor 99.9 4.1E-23 8.9E-28 170.0 8.7 119 71-189 25-158 (228)
69 COG1137 YhbG ABC-type (unclass 99.9 3.4E-24 7.3E-29 174.7 1.9 121 69-189 17-151 (243)
70 cd03218 ABC_YhbG The ABC trans 99.9 5E-23 1.1E-27 169.8 8.9 119 71-189 15-145 (232)
71 PRK13641 cbiO cobalt transport 99.9 4.4E-23 9.5E-28 176.4 8.7 119 71-189 22-157 (287)
72 TIGR03522 GldA_ABC_ATP gliding 99.9 2.8E-23 6.2E-28 178.7 7.5 118 71-189 17-145 (301)
73 TIGR01288 nodI ATP-binding ABC 99.9 4.2E-23 9.2E-28 177.7 8.4 118 71-189 19-147 (303)
74 cd03301 ABC_MalK_N The N-termi 99.9 4E-23 8.8E-28 168.3 7.9 117 71-189 15-142 (213)
75 cd03269 ABC_putative_ATPase Th 99.9 3.3E-23 7.1E-28 168.7 7.3 115 71-189 15-140 (210)
76 PRK13652 cbiO cobalt transport 99.9 5.6E-23 1.2E-27 174.8 9.0 119 71-189 19-149 (277)
77 PRK10070 glycine betaine trans 99.9 4E-23 8.6E-28 184.7 8.4 120 70-189 42-176 (400)
78 PRK13548 hmuV hemin importer A 99.9 6.2E-23 1.4E-27 172.8 9.1 119 71-189 17-146 (258)
79 PRK03695 vitamin B12-transport 99.9 8.5E-23 1.9E-27 171.0 9.8 118 72-189 12-138 (248)
80 TIGR03608 L_ocin_972_ABC putat 99.9 5.4E-23 1.2E-27 166.6 8.2 119 71-189 13-146 (206)
81 PRK13651 cobalt transporter AT 99.9 6.1E-23 1.3E-27 177.4 9.0 120 70-189 21-177 (305)
82 cd03264 ABC_drug_resistance_li 99.9 4.8E-23 1E-27 167.8 7.9 117 71-189 15-142 (211)
83 PRK09493 glnQ glutamine ABC tr 99.9 6.6E-23 1.4E-27 170.2 8.8 119 71-189 16-148 (240)
84 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.4E-23 9.5E-28 169.2 7.4 115 70-189 18-143 (220)
85 cd03296 ABC_CysA_sulfate_impor 99.9 5.6E-23 1.2E-27 170.7 8.0 117 71-189 17-148 (239)
86 cd03260 ABC_PstB_phosphate_tra 99.9 7.6E-23 1.6E-27 168.4 8.7 119 71-189 15-153 (227)
87 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.3E-23 1.4E-27 173.8 8.4 119 71-189 39-172 (269)
88 PRK13636 cbiO cobalt transport 99.9 7.9E-23 1.7E-27 174.5 8.9 119 71-189 21-153 (283)
89 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.1E-22 2.5E-27 165.6 9.5 114 74-189 16-140 (211)
90 cd03224 ABC_TM1139_LivF_branch 99.9 6.3E-23 1.4E-27 168.0 7.9 118 71-189 15-144 (222)
91 cd03268 ABC_BcrA_bacitracin_re 99.9 4.2E-23 9.1E-28 167.8 6.8 114 71-189 15-138 (208)
92 PRK10253 iron-enterobactin tra 99.9 9.5E-23 2.1E-27 172.1 9.1 119 71-189 22-155 (265)
93 TIGR03258 PhnT 2-aminoethylpho 99.9 6.2E-23 1.4E-27 181.3 8.3 117 71-189 20-149 (362)
94 PRK11831 putative ABC transpor 99.9 6.2E-23 1.3E-27 173.7 7.9 119 71-189 22-155 (269)
95 PRK13642 cbiO cobalt transport 99.9 1E-22 2.3E-27 173.1 9.2 120 70-189 21-152 (277)
96 PRK13643 cbiO cobalt transport 99.9 9.3E-23 2E-27 174.5 8.9 119 71-189 21-156 (288)
97 PRK13633 cobalt transporter AT 99.9 1.1E-22 2.4E-27 173.2 9.3 120 70-189 24-156 (280)
98 PRK10575 iron-hydroxamate tran 99.9 9E-23 2E-27 172.3 8.6 119 71-189 26-159 (265)
99 PRK13639 cbiO cobalt transport 99.9 1E-22 2.2E-27 173.0 8.7 119 71-189 17-149 (275)
100 PRK10895 lipopolysaccharide AB 99.9 1.3E-22 2.9E-27 168.5 9.0 119 71-189 18-149 (241)
101 PRK13638 cbiO cobalt transport 99.9 1.7E-22 3.6E-27 171.2 9.8 119 71-189 16-148 (271)
102 COG0411 LivG ABC-type branched 99.9 2.6E-23 5.7E-28 173.3 4.7 122 68-189 16-161 (250)
103 PRK11308 dppF dipeptide transp 99.9 1E-22 2.3E-27 177.5 8.7 120 70-189 29-166 (327)
104 PRK13648 cbiO cobalt transport 99.9 1.6E-22 3.5E-27 171.1 9.6 119 71-189 24-154 (269)
105 PRK13640 cbiO cobalt transport 99.9 1.8E-22 3.8E-27 172.3 9.9 119 71-189 22-155 (282)
106 PRK11231 fecE iron-dicitrate t 99.9 1.1E-22 2.4E-27 170.5 8.5 119 71-189 17-150 (255)
107 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.1E-22 2.5E-27 168.5 8.3 118 71-189 16-144 (236)
108 PRK10247 putative ABC transpor 99.9 1.4E-22 3.1E-27 167.2 8.7 118 71-189 22-149 (225)
109 PRK14250 phosphate ABC transpo 99.9 1.7E-22 3.8E-27 168.2 9.0 116 71-189 18-143 (241)
110 PRK13631 cbiO cobalt transport 99.9 1.9E-22 4.2E-27 175.4 9.4 120 70-189 40-188 (320)
111 cd03257 ABC_NikE_OppD_transpor 99.9 1.9E-22 4E-27 165.6 8.8 120 70-189 19-157 (228)
112 PRK14247 phosphate ABC transpo 99.9 2.1E-22 4.6E-27 168.1 9.1 119 71-189 18-158 (250)
113 TIGR03415 ABC_choXWV_ATP choli 99.9 1.3E-22 2.9E-27 180.3 8.3 120 70-189 38-176 (382)
114 cd03297 ABC_ModC_molybdenum_tr 99.9 1.9E-22 4.1E-27 164.8 8.5 114 74-189 16-143 (214)
115 TIGR02982 heterocyst_DevA ABC 99.9 1.6E-22 3.6E-27 166.0 8.2 120 70-189 19-153 (220)
116 TIGR01277 thiQ thiamine ABC tr 99.9 1.9E-22 4.2E-27 164.8 8.5 114 74-189 16-140 (213)
117 TIGR02142 modC_ABC molybdenum 99.9 1.6E-22 3.6E-27 177.8 8.6 115 74-189 15-143 (354)
118 TIGR03873 F420-0_ABC_ATP propo 99.9 2.1E-22 4.6E-27 168.9 8.8 119 71-189 16-149 (256)
119 PRK11264 putative amino-acid A 99.9 2.4E-22 5.3E-27 167.5 9.1 119 71-189 18-156 (250)
120 TIGR03411 urea_trans_UrtD urea 99.9 2.8E-22 6.2E-27 166.4 9.3 119 71-189 17-155 (242)
121 PRK13649 cbiO cobalt transport 99.9 2.3E-22 5.1E-27 170.8 8.7 119 71-189 22-157 (280)
122 COG4181 Predicted ABC-type tra 99.9 1.4E-22 3.1E-27 162.1 6.5 123 67-189 21-158 (228)
123 PRK10771 thiQ thiamine transpo 99.9 3.7E-22 7.9E-27 165.1 9.2 114 74-189 17-141 (232)
124 PRK11144 modC molybdate transp 99.9 2.5E-22 5.4E-27 176.6 8.6 111 74-189 16-140 (352)
125 PRK15112 antimicrobial peptide 99.9 4.1E-22 8.9E-27 168.5 9.6 120 70-189 27-161 (267)
126 COG1117 PstB ABC-type phosphat 99.9 2E-22 4.3E-27 165.7 7.3 125 64-189 16-161 (253)
127 TIGR02769 nickel_nikE nickel i 99.9 3.5E-22 7.6E-27 168.7 9.1 119 71-189 26-162 (265)
128 PRK13538 cytochrome c biogenes 99.9 2.1E-22 4.7E-27 163.7 7.5 116 71-189 16-141 (204)
129 PRK11124 artP arginine transpo 99.9 3.7E-22 8E-27 165.9 8.9 119 71-189 17-153 (242)
130 PRK11022 dppD dipeptide transp 99.9 2.7E-22 5.9E-27 174.8 8.4 120 70-189 21-165 (326)
131 cd03231 ABC_CcmA_heme_exporter 99.9 4E-22 8.7E-27 161.9 8.7 113 71-189 15-137 (201)
132 PRK11300 livG leucine/isoleuci 99.9 3.8E-22 8.2E-27 166.9 8.7 119 71-189 20-165 (255)
133 COG4555 NatA ABC-type Na+ tran 99.9 1.1E-22 2.3E-27 166.1 5.0 124 65-189 11-145 (245)
134 PRK13540 cytochrome c biogenes 99.9 4.6E-22 1E-26 161.3 8.5 114 71-189 16-139 (200)
135 TIGR02868 CydC thiol reductant 99.9 3.6E-22 7.8E-27 182.9 8.7 114 70-189 349-482 (529)
136 PRK10762 D-ribose transporter 99.9 4.2E-22 9.1E-27 181.8 9.0 119 71-189 19-153 (501)
137 TIGR00972 3a0107s01c2 phosphat 99.9 5.3E-22 1.1E-26 165.6 8.6 119 71-189 16-156 (247)
138 COG4152 ABC-type uncharacteriz 99.9 2.3E-22 5E-27 168.2 6.1 117 69-189 15-142 (300)
139 PRK13645 cbiO cobalt transport 99.9 4.9E-22 1.1E-26 169.8 8.3 119 71-189 26-162 (289)
140 PRK11248 tauB taurine transpor 99.9 5.4E-22 1.2E-26 167.0 8.3 114 71-189 16-140 (255)
141 TIGR01189 ccmA heme ABC export 99.9 3.5E-22 7.6E-27 161.6 6.9 115 71-189 15-139 (198)
142 TIGR03005 ectoine_ehuA ectoine 99.9 5.7E-22 1.2E-26 165.8 8.3 119 71-189 15-158 (252)
143 TIGR01184 ntrCD nitrate transp 99.9 7.9E-22 1.7E-26 163.3 9.0 105 80-189 10-126 (230)
144 PF00005 ABC_tran: ABC transpo 99.9 1.3E-22 2.8E-27 154.0 3.9 104 80-189 10-120 (137)
145 cd03245 ABCC_bacteriocin_expor 99.9 6.7E-22 1.4E-26 161.9 8.3 115 70-189 18-152 (220)
146 PRK11614 livF leucine/isoleuci 99.9 6.1E-22 1.3E-26 164.1 8.1 118 71-189 20-149 (237)
147 cd03252 ABCC_Hemolysin The ABC 99.9 8.3E-22 1.8E-26 163.1 8.6 118 71-189 17-150 (237)
148 PRK09700 D-allose transporter 99.9 7.8E-22 1.7E-26 180.3 9.2 119 71-189 20-157 (510)
149 cd03248 ABCC_TAP TAP, the Tran 99.9 6E-22 1.3E-26 162.9 7.6 118 71-189 29-162 (226)
150 PRK11247 ssuB aliphatic sulfon 99.9 7.6E-22 1.6E-26 166.7 8.2 109 71-189 27-145 (257)
151 PRK13549 xylose transporter AT 99.9 8.1E-22 1.8E-26 180.1 9.0 120 70-189 19-155 (506)
152 PRK13547 hmuV hemin importer A 99.9 1.2E-21 2.5E-26 166.8 9.3 119 71-189 16-157 (272)
153 PRK14267 phosphate ABC transpo 99.9 9.6E-22 2.1E-26 164.4 8.4 119 71-189 19-161 (253)
154 TIGR02324 CP_lyasePhnL phospho 99.9 1.4E-21 3.1E-26 160.5 9.2 119 71-189 23-161 (224)
155 TIGR03410 urea_trans_UrtE urea 99.9 7.5E-22 1.6E-26 162.7 7.4 117 71-189 15-143 (230)
156 PRK09473 oppD oligopeptide tra 99.9 9.5E-22 2.1E-26 171.7 8.2 120 70-189 30-173 (330)
157 PRK14259 phosphate ABC transpo 99.9 1.5E-21 3.3E-26 165.4 9.2 119 71-189 28-166 (269)
158 cd03299 ABC_ModC_like Archeal 99.9 1.1E-21 2.3E-26 162.9 8.1 117 71-189 14-141 (235)
159 PRK14269 phosphate ABC transpo 99.9 1.3E-21 2.9E-26 163.2 8.6 119 71-189 17-154 (246)
160 cd03254 ABCC_Glucan_exporter_l 99.9 1.4E-21 3.1E-26 160.8 8.7 114 71-189 18-151 (229)
161 COG4148 ModC ABC-type molybdat 99.9 2.9E-22 6.2E-27 170.4 4.5 117 72-188 14-139 (352)
162 PRK14273 phosphate ABC transpo 99.9 1.4E-21 3E-26 163.7 8.6 119 71-189 22-162 (254)
163 TIGR02770 nickel_nikD nickel i 99.9 1.3E-21 2.8E-26 161.8 8.3 114 74-189 4-137 (230)
164 TIGR01978 sufC FeS assembly AT 99.9 1.4E-21 3.1E-26 161.9 8.3 119 71-189 15-156 (243)
165 PRK15093 antimicrobial peptide 99.9 1.2E-21 2.5E-26 170.9 8.1 120 70-189 21-170 (330)
166 TIGR03771 anch_rpt_ABC anchore 99.9 2.1E-21 4.5E-26 160.1 9.2 106 79-189 4-125 (223)
167 PRK13539 cytochrome c biogenes 99.9 1.1E-21 2.4E-26 160.0 7.3 113 71-189 17-139 (207)
168 cd03267 ABC_NatA_like Similar 99.9 1.3E-21 2.7E-26 162.7 7.9 118 71-189 36-165 (236)
169 PRK15439 autoinducer 2 ABC tra 99.9 1.5E-21 3.3E-26 178.7 9.1 116 71-189 26-152 (510)
170 PRK11701 phnK phosphonate C-P 99.9 2.9E-21 6.2E-26 162.3 10.0 119 71-189 21-163 (258)
171 PRK09700 D-allose transporter 99.9 2.1E-21 4.6E-26 177.4 10.0 119 71-189 278-421 (510)
172 PRK10619 histidine/lysine/argi 99.9 1.9E-21 4E-26 163.3 8.8 119 71-189 20-164 (257)
173 PRK10261 glutathione transport 99.9 1.1E-21 2.4E-26 183.6 8.3 120 70-189 338-475 (623)
174 cd03251 ABCC_MsbA MsbA is an e 99.9 1.5E-21 3.2E-26 161.2 8.0 118 71-189 17-150 (234)
175 PRK10938 putative molybdenum t 99.9 1.4E-21 3.1E-26 177.7 8.6 119 71-189 18-147 (490)
176 PRK14242 phosphate transporter 99.8 1.7E-21 3.6E-26 162.9 8.1 119 71-189 21-161 (253)
177 PRK11176 lipid transporter ATP 99.8 2.1E-21 4.6E-26 179.5 9.5 117 69-189 356-492 (582)
178 PRK15056 manganese/iron transp 99.8 1.3E-21 2.8E-26 165.9 7.4 116 71-189 22-154 (272)
179 cd03214 ABC_Iron-Siderophores_ 99.8 1E-21 2.2E-26 156.9 6.3 94 71-189 14-109 (180)
180 cd03300 ABC_PotA_N PotA is an 99.8 2.3E-21 4.9E-26 160.5 8.5 117 71-189 15-142 (232)
181 PRK09984 phosphonate/organopho 99.8 2.5E-21 5.3E-26 163.0 8.9 119 71-189 19-164 (262)
182 PRK10982 galactose/methyl gala 99.8 1.9E-21 4.1E-26 177.0 8.7 119 71-189 13-146 (491)
183 cd03234 ABCG_White The White s 99.8 1.9E-21 4.1E-26 160.2 7.9 117 70-189 21-155 (226)
184 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2.3E-21 5E-26 182.8 9.4 115 69-189 466-600 (686)
185 COG4525 TauB ABC-type taurine 99.8 2.1E-21 4.6E-26 158.2 7.9 115 70-189 19-144 (259)
186 PRK11288 araG L-arabinose tran 99.8 2.6E-21 5.6E-26 176.6 9.4 119 71-189 19-152 (501)
187 PRK10744 pstB phosphate transp 99.8 2.6E-21 5.6E-26 162.8 8.6 119 71-189 28-168 (260)
188 PRK14235 phosphate transporter 99.8 2.1E-21 4.6E-26 164.2 8.1 119 71-189 34-175 (267)
189 cd03244 ABCC_MRP_domain2 Domai 99.8 2.3E-21 5E-26 158.8 7.9 113 71-189 19-151 (221)
190 TIGR02323 CP_lyasePhnK phospho 99.8 3.1E-21 6.6E-26 161.4 8.6 119 71-189 18-160 (253)
191 COG1123 ATPase components of v 99.8 3.1E-21 6.6E-26 176.6 9.0 121 69-189 304-441 (539)
192 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3E-21 6.5E-26 159.9 8.1 118 71-189 18-151 (238)
193 PRK14241 phosphate transporter 99.8 3.1E-21 6.7E-26 162.1 8.1 119 71-189 19-160 (258)
194 COG0444 DppD ABC-type dipeptid 99.8 3E-21 6.6E-26 166.4 7.8 121 69-189 18-165 (316)
195 PRK11174 cysteine/glutathione 99.8 3.1E-21 6.8E-26 178.7 8.5 114 70-189 364-497 (588)
196 PRK13543 cytochrome c biogenes 99.8 3.3E-21 7.2E-26 157.9 7.6 114 71-189 26-149 (214)
197 PRK10790 putative multidrug tr 99.8 4E-21 8.6E-26 178.3 8.9 114 70-189 355-488 (592)
198 PRK15134 microcin C ABC transp 99.8 4E-21 8.7E-26 176.4 8.7 120 70-189 300-437 (529)
199 TIGR00968 3a0106s01 sulfate AB 99.8 4.5E-21 9.7E-26 159.4 8.1 117 71-189 15-142 (237)
200 TIGR02633 xylG D-xylose ABC tr 99.8 5.8E-21 1.3E-25 174.1 9.4 119 71-189 16-153 (500)
201 PRK14268 phosphate ABC transpo 99.8 4.4E-21 9.5E-26 161.3 8.0 119 71-189 27-166 (258)
202 cd03253 ABCC_ATM1_transporter 99.8 6E-21 1.3E-25 157.7 8.4 118 71-189 16-149 (236)
203 PRK10419 nikE nickel transport 99.8 7E-21 1.5E-25 161.2 9.0 119 71-189 27-163 (268)
204 PRK10762 D-ribose transporter 99.8 6.3E-21 1.4E-25 174.1 9.2 118 72-189 268-407 (501)
205 PRK11160 cysteine/glutathione 99.8 7.9E-21 1.7E-25 176.2 9.9 115 70-189 354-487 (574)
206 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 5.5E-21 1.2E-25 180.8 8.9 115 70-189 493-627 (710)
207 PRK13541 cytochrome c biogenes 99.8 4.6E-21 1E-25 154.8 7.2 107 75-189 19-135 (195)
208 TIGR02203 MsbA_lipidA lipid A 99.8 6.6E-21 1.4E-25 175.6 9.2 116 70-189 346-481 (571)
209 COG2274 SunT ABC-type bacterio 99.8 5.9E-21 1.3E-25 180.8 9.0 116 69-189 486-621 (709)
210 PRK14274 phosphate ABC transpo 99.8 6.8E-21 1.5E-25 160.1 8.4 119 71-189 27-167 (259)
211 PRK14254 phosphate ABC transpo 99.8 4.9E-21 1.1E-25 163.8 7.6 118 71-189 54-192 (285)
212 TIGR02857 CydD thiol reductant 99.8 8.5E-21 1.8E-25 173.8 9.7 115 70-189 336-470 (529)
213 TIGR03740 galliderm_ABC gallid 99.8 3E-21 6.6E-26 158.6 6.0 112 71-189 15-136 (223)
214 PRK13549 xylose transporter AT 99.8 8.4E-21 1.8E-25 173.4 9.5 119 71-189 277-417 (506)
215 cd03290 ABCC_SUR1_N The SUR do 99.8 8.9E-21 1.9E-25 155.3 8.7 114 70-189 15-152 (218)
216 TIGR01193 bacteriocin_ABC ABC- 99.8 5.4E-21 1.2E-25 180.9 8.4 116 70-189 488-623 (708)
217 PRK14256 phosphate ABC transpo 99.8 9E-21 1.9E-25 158.6 8.6 119 71-189 19-160 (252)
218 PRK14240 phosphate transporter 99.8 8.6E-21 1.9E-25 158.4 8.5 119 71-189 18-158 (250)
219 PRK15134 microcin C ABC transp 99.8 8.1E-21 1.8E-25 174.4 8.9 120 70-189 23-168 (529)
220 cd03289 ABCC_CFTR2 The CFTR su 99.8 1E-20 2.3E-25 161.4 8.8 114 70-189 18-150 (275)
221 COG3845 ABC-type uncharacteriz 99.8 9.6E-21 2.1E-25 170.4 8.6 121 69-189 17-152 (501)
222 PRK14263 phosphate ABC transpo 99.8 8.7E-21 1.9E-25 160.2 7.9 120 70-189 22-161 (261)
223 PRK11288 araG L-arabinose tran 99.8 1.3E-20 2.8E-25 172.0 9.4 119 71-189 268-408 (501)
224 PRK14270 phosphate ABC transpo 99.8 1.4E-20 2.9E-25 157.4 8.6 119 71-189 19-159 (251)
225 TIGR03375 type_I_sec_LssB type 99.8 1.3E-20 2.7E-25 178.0 9.3 115 70-189 479-613 (694)
226 cd03236 ABC_RNaseL_inhibitor_d 99.8 9.1E-21 2E-25 160.1 7.5 115 71-189 16-151 (255)
227 PRK14272 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 156.8 8.7 119 71-189 19-160 (252)
228 TIGR03269 met_CoM_red_A2 methy 99.8 1.2E-20 2.6E-25 172.8 8.7 120 70-189 298-439 (520)
229 PRK14248 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 158.7 8.8 119 71-189 36-176 (268)
230 TIGR02633 xylG D-xylose ABC tr 99.8 1.6E-20 3.4E-25 171.3 9.4 120 70-189 274-415 (500)
231 PRK14251 phosphate ABC transpo 99.8 1.7E-20 3.7E-25 156.7 8.7 119 71-189 19-159 (251)
232 PRK14243 phosphate transporter 99.8 1.8E-20 3.8E-25 158.3 8.9 119 71-189 25-163 (264)
233 PRK14237 phosphate transporter 99.8 1.9E-20 4E-25 158.4 9.0 119 71-189 35-175 (267)
234 COG1132 MdlB ABC-type multidru 99.8 2.1E-20 4.5E-25 172.8 10.1 117 68-189 341-477 (567)
235 TIGR00958 3a01208 Conjugate Tr 99.8 1.1E-20 2.4E-25 179.2 8.5 115 70-189 495-629 (711)
236 PRK14262 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 157.6 7.6 119 71-189 18-158 (250)
237 COG4598 HisP ABC-type histidin 99.8 7.3E-21 1.6E-25 153.6 5.7 117 73-189 23-164 (256)
238 PRK14244 phosphate ABC transpo 99.8 1.4E-20 3.1E-25 157.3 7.7 119 71-189 20-161 (251)
239 PRK14246 phosphate ABC transpo 99.8 2.7E-20 5.8E-25 156.9 9.4 119 71-189 25-165 (257)
240 PRK15439 autoinducer 2 ABC tra 99.8 2.2E-20 4.8E-25 171.0 9.7 118 72-189 279-415 (510)
241 PRK10261 glutathione transport 99.8 1.3E-20 2.8E-25 176.5 8.2 120 70-189 30-180 (623)
242 PRK10418 nikD nickel transport 99.8 1.3E-20 2.7E-25 158.1 7.3 116 71-189 18-152 (254)
243 TIGR01187 potA spermidine/putr 99.8 1.2E-20 2.6E-25 164.3 7.2 102 86-189 1-112 (325)
244 PRK14271 phosphate ABC transpo 99.8 2E-20 4.4E-25 159.2 8.3 119 71-189 36-175 (276)
245 PRK14253 phosphate ABC transpo 99.8 2.7E-20 5.8E-25 155.3 8.8 119 71-189 18-157 (249)
246 CHL00131 ycf16 sulfate ABC tra 99.8 3E-20 6.5E-25 155.1 9.1 119 71-189 22-163 (252)
247 PRK14275 phosphate ABC transpo 99.8 1.7E-20 3.7E-25 160.4 7.7 119 71-189 54-194 (286)
248 PRK14266 phosphate ABC transpo 99.8 2.8E-20 6.1E-25 155.3 8.7 119 71-189 18-158 (250)
249 cd03237 ABC_RNaseL_inhibitor_d 99.8 2E-20 4.4E-25 157.0 7.7 95 80-189 24-127 (246)
250 TIGR03269 met_CoM_red_A2 methy 99.8 2E-20 4.3E-25 171.4 8.2 119 71-189 15-180 (520)
251 PRK14261 phosphate ABC transpo 99.8 2.4E-20 5.1E-25 156.1 7.9 119 71-189 21-161 (253)
252 PRK13657 cyclic beta-1,2-gluca 99.8 2.3E-20 5.1E-25 173.1 8.7 115 70-189 349-483 (588)
253 PRK14245 phosphate ABC transpo 99.8 2.5E-20 5.3E-25 155.8 8.0 119 71-189 18-158 (250)
254 PRK14238 phosphate transporter 99.8 3.4E-20 7.4E-25 157.2 8.9 119 71-189 39-179 (271)
255 PRK14265 phosphate ABC transpo 99.8 3.4E-20 7.4E-25 157.6 8.7 119 71-189 35-173 (274)
256 PRK14260 phosphate ABC transpo 99.8 2.8E-20 6.2E-25 156.4 8.1 119 71-189 22-162 (259)
257 PRK14249 phosphate ABC transpo 99.8 4.1E-20 8.9E-25 154.5 8.9 119 71-189 19-159 (251)
258 KOG0057 Mitochondrial Fe/S clu 99.8 2.7E-20 5.8E-25 169.3 7.9 121 64-189 360-499 (591)
259 PRK10938 putative molybdenum t 99.8 6E-20 1.3E-24 167.0 10.2 119 71-189 275-413 (490)
260 COG1101 PhnK ABC-type uncharac 99.8 2.5E-20 5.4E-25 153.6 6.9 118 72-189 22-160 (263)
261 PRK14239 phosphate transporter 99.8 6E-20 1.3E-24 153.3 9.1 119 71-189 20-160 (252)
262 PRK10522 multidrug transporter 99.8 6E-20 1.3E-24 169.3 9.8 118 70-189 337-461 (547)
263 cd03369 ABCC_NFT1 Domain 2 of 99.8 4.9E-20 1.1E-24 149.8 8.1 107 70-189 22-137 (207)
264 TIGR02204 MsbA_rel ABC transpo 99.8 4.4E-20 9.6E-25 170.4 8.5 115 70-189 354-488 (576)
265 COG1129 MglA ABC-type sugar tr 99.8 7.6E-20 1.7E-24 166.3 9.7 122 68-189 20-157 (500)
266 PRK14236 phosphate transporter 99.8 6.1E-20 1.3E-24 155.7 8.4 119 71-189 40-180 (272)
267 PRK09544 znuC high-affinity zi 99.8 1.6E-20 3.5E-25 157.9 4.7 108 71-189 19-132 (251)
268 PRK09580 sufC cysteine desulfu 99.8 1.2E-19 2.6E-24 151.0 9.3 119 71-189 16-157 (248)
269 KOG0058 Peptide exporter, ABC 99.8 9.5E-20 2.1E-24 169.9 9.5 124 64-189 474-616 (716)
270 PRK14264 phosphate ABC transpo 99.8 9.6E-20 2.1E-24 157.2 8.8 119 71-189 60-212 (305)
271 PRK10982 galactose/methyl gala 99.8 1E-19 2.2E-24 165.7 9.3 119 71-189 263-403 (491)
272 COG4172 ABC-type uncharacteriz 99.8 9.1E-20 2E-24 161.5 8.6 128 62-189 290-438 (534)
273 PRK14255 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 152.6 7.9 119 71-189 20-160 (252)
274 PRK10789 putative multidrug tr 99.8 1.1E-19 2.3E-24 168.4 9.3 115 70-189 329-463 (569)
275 cd03288 ABCC_SUR2 The SUR doma 99.8 9.8E-20 2.1E-24 153.1 8.2 118 71-189 36-168 (257)
276 PRK14257 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 158.8 8.6 120 70-189 96-237 (329)
277 TIGR01846 type_I_sec_HlyB type 99.8 1.1E-19 2.5E-24 171.6 9.4 115 70-189 471-605 (694)
278 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.4E-19 3E-24 167.3 9.6 119 70-189 356-482 (555)
279 TIGR01257 rim_protein retinal- 99.8 7E-20 1.5E-24 187.9 8.3 119 70-189 944-1073(2272)
280 TIGR01257 rim_protein retinal- 99.8 7.6E-20 1.6E-24 187.7 8.5 120 69-189 1952-2082(2272)
281 TIGR01842 type_I_sec_PrtD type 99.8 1.6E-19 3.4E-24 166.3 9.6 119 70-189 332-466 (544)
282 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1E-19 2.2E-24 150.3 7.4 115 70-189 36-154 (224)
283 PRK14258 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 152.2 8.3 119 71-189 22-162 (261)
284 PRK14252 phosphate ABC transpo 99.8 1.8E-19 3.9E-24 152.0 8.6 120 70-189 30-173 (265)
285 COG1123 ATPase components of v 99.8 1.4E-19 3E-24 165.7 8.3 121 69-189 22-166 (539)
286 COG4167 SapF ABC-type antimicr 99.8 1.9E-19 4.2E-24 145.7 7.5 128 62-189 18-161 (267)
287 COG4988 CydD ABC-type transpor 99.8 2.7E-19 6E-24 163.7 9.2 115 70-189 335-468 (559)
288 COG4608 AppF ABC-type oligopep 99.8 1.6E-19 3.4E-24 152.8 6.9 93 69-189 26-121 (268)
289 KOG0055 Multidrug/pheromone ex 99.8 2.2E-19 4.7E-24 175.4 8.7 121 64-189 359-501 (1228)
290 TIGR01192 chvA glucan exporter 99.8 3E-19 6.6E-24 166.0 9.2 114 71-189 350-483 (585)
291 cd03229 ABC_Class3 This class 99.8 5.1E-20 1.1E-24 146.9 2.7 68 71-138 15-86 (178)
292 PRK10535 macrolide transporter 99.8 3.4E-19 7.4E-24 167.7 8.6 119 71-189 23-156 (648)
293 cd03246 ABCC_Protease_Secretio 99.8 2.9E-19 6.2E-24 141.9 6.7 67 71-137 17-85 (173)
294 PRK13409 putative ATPase RIL; 99.8 8.6E-20 1.9E-24 170.2 4.3 118 72-189 90-224 (590)
295 COG4133 CcmA ABC-type transpor 99.8 2.4E-19 5.2E-24 144.8 6.1 117 70-189 16-142 (209)
296 cd03233 ABC_PDR_domain1 The pl 99.8 6.1E-20 1.3E-24 149.4 2.6 105 70-189 21-130 (202)
297 cd03250 ABCC_MRP_domain1 Domai 99.8 3.8E-19 8.2E-24 144.3 7.0 101 70-189 19-139 (204)
298 PTZ00243 ABC transporter; Prov 99.8 4.4E-19 9.5E-24 180.0 9.1 115 69-189 1323-1457(1560)
299 COG1119 ModF ABC-type molybden 99.8 4.4E-19 9.4E-24 148.3 7.5 125 64-189 40-183 (257)
300 PLN03232 ABC transporter C fam 99.8 3.9E-19 8.4E-24 179.9 8.6 115 69-189 1249-1383(1495)
301 PTZ00265 multidrug resistance 99.8 4.6E-19 1E-23 178.9 9.1 115 70-189 1182-1370(1466)
302 PLN03211 ABC transporter G-25; 99.8 4E-19 8.7E-24 167.6 8.1 115 71-189 83-218 (659)
303 PLN03130 ABC transporter C fam 99.8 4.6E-19 9.9E-24 180.3 9.0 115 69-189 1252-1386(1622)
304 PRK15064 ABC transporter ATP-b 99.8 4.8E-19 1E-23 162.7 8.1 104 71-189 334-450 (530)
305 cd03228 ABCC_MRP_Like The MRP 99.8 4E-19 8.6E-24 140.9 6.2 67 71-137 17-85 (171)
306 COG1134 TagH ABC-type polysacc 99.8 4.8E-19 1E-23 147.9 6.9 118 67-189 38-159 (249)
307 cd03230 ABC_DR_subfamily_A Thi 99.8 1.1E-19 2.5E-24 144.3 2.9 67 71-138 15-83 (173)
308 cd03247 ABCC_cytochrome_bd The 99.8 2.3E-19 5E-24 143.0 4.6 92 71-189 17-110 (178)
309 COG4674 Uncharacterized ABC-ty 99.8 2.2E-19 4.8E-24 146.3 4.4 119 70-188 19-158 (249)
310 cd03215 ABC_Carb_Monos_II This 99.8 8E-19 1.7E-23 140.5 7.5 67 71-137 15-84 (182)
311 TIGR00955 3a01204 The Eye Pigm 99.8 9.7E-19 2.1E-23 163.7 8.3 117 70-189 39-178 (617)
312 COG4136 ABC-type uncharacteriz 99.8 9.6E-19 2.1E-23 137.8 6.5 108 79-188 26-145 (213)
313 PRK15064 ABC transporter ATP-b 99.8 8.9E-19 1.9E-23 161.0 7.3 108 71-189 16-167 (530)
314 PRK13409 putative ATPase RIL; 99.8 1.1E-18 2.5E-23 162.7 7.9 94 79-189 363-465 (590)
315 PTZ00265 multidrug resistance 99.8 1.7E-18 3.8E-23 174.7 9.2 76 70-145 399-484 (1466)
316 PRK13546 teichoic acids export 99.8 1.7E-18 3.6E-23 146.9 7.6 115 69-189 37-155 (264)
317 cd03217 ABC_FeS_Assembly ABC-t 99.8 5.3E-19 1.2E-23 143.5 4.4 97 71-189 15-116 (200)
318 COG4161 ArtP ABC-type arginine 99.8 2.2E-18 4.8E-23 137.3 7.7 116 74-189 20-153 (242)
319 PRK11819 putative ABC transpor 99.8 1.7E-18 3.7E-23 160.1 8.0 107 71-189 339-457 (556)
320 cd03216 ABC_Carb_Monos_I This 99.7 1.2E-18 2.5E-23 137.6 5.7 65 71-135 15-82 (163)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.8E-18 4E-23 159.7 7.9 107 71-189 337-455 (552)
322 PRK11147 ABC transporter ATPas 99.7 2.5E-18 5.3E-23 161.5 7.9 107 71-189 334-452 (635)
323 PRK11819 putative ABC transpor 99.7 7E-19 1.5E-23 162.7 4.1 107 71-189 22-175 (556)
324 TIGR00957 MRP_assoc_pro multi 99.7 3E-18 6.5E-23 173.7 9.0 114 70-189 1300-1433(1522)
325 COG0396 sufC Cysteine desulfur 99.7 4.6E-18 1E-22 141.1 7.8 108 80-188 29-155 (251)
326 COG4618 ArpD ABC-type protease 99.7 2.9E-18 6.4E-23 155.1 7.1 114 69-189 349-484 (580)
327 KOG0055 Multidrug/pheromone ex 99.7 6.8E-18 1.5E-22 165.0 10.1 116 69-189 1003-1138(1228)
328 cd03232 ABC_PDR_domain2 The pl 99.7 6.8E-19 1.5E-23 142.1 2.6 95 71-189 22-120 (192)
329 COG4987 CydC ABC-type transpor 99.7 5.3E-18 1.2E-22 154.2 8.6 121 64-189 345-486 (573)
330 cd03213 ABCG_EPDR ABCG transpo 99.7 3.7E-18 8.1E-23 138.1 6.8 97 70-189 23-123 (194)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3.8E-18 8.3E-23 157.6 7.6 107 71-189 20-173 (552)
332 cd03223 ABCD_peroxisomal_ALDP 99.7 3.9E-18 8.4E-23 135.0 6.4 86 71-189 16-103 (166)
333 COG4586 ABC-type uncharacteriz 99.7 2.9E-18 6.2E-23 145.5 5.8 120 69-189 37-168 (325)
334 PRK10636 putative ABC transpor 99.7 1.8E-18 3.9E-23 162.6 5.1 119 71-189 16-161 (638)
335 COG4107 PhnK ABC-type phosphon 99.7 7.2E-18 1.6E-22 135.8 7.5 120 70-189 20-163 (258)
336 PLN03073 ABC transporter F fam 99.7 6.4E-18 1.4E-22 160.8 8.2 104 71-189 524-639 (718)
337 COG4778 PhnL ABC-type phosphon 99.7 7.3E-18 1.6E-22 135.1 7.3 122 68-189 23-164 (235)
338 TIGR01271 CFTR_protein cystic 99.7 7E-18 1.5E-22 170.8 8.7 115 69-189 1232-1365(1490)
339 TIGR00956 3a01205 Pleiotropic 99.7 5.4E-18 1.2E-22 170.6 7.9 116 70-189 777-913 (1394)
340 PRK10636 putative ABC transpor 99.7 4.8E-18 1E-22 159.7 6.1 108 71-189 327-442 (638)
341 TIGR00954 3a01203 Peroxysomal 99.7 9.8E-18 2.1E-22 158.1 8.2 109 70-189 466-594 (659)
342 cd03291 ABCC_CFTR1 The CFTR su 99.7 1.1E-17 2.3E-22 143.4 7.6 100 71-189 52-171 (282)
343 PRK15177 Vi polysaccharide exp 99.7 9.3E-18 2E-22 137.8 6.4 107 73-189 4-116 (213)
344 PRK13545 tagH teichoic acids e 99.7 1.5E-17 3.3E-22 152.8 7.3 113 71-189 39-155 (549)
345 PLN03140 ABC transporter G fam 99.7 2.8E-17 6.1E-22 165.9 8.9 117 70-189 894-1031(1470)
346 COG4172 ABC-type uncharacteriz 99.7 1.8E-17 3.9E-22 147.0 6.2 121 69-189 23-169 (534)
347 COG4138 BtuD ABC-type cobalami 99.7 9E-18 2E-22 135.2 3.6 110 79-188 23-136 (248)
348 cd03222 ABC_RNaseL_inhibitor T 99.7 1.5E-17 3.2E-22 133.8 4.8 49 77-137 21-70 (177)
349 KOG0056 Heavy metal exporter H 99.7 1.9E-17 4.1E-22 149.8 6.0 124 65-189 547-686 (790)
350 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.7E-17 5.8E-22 128.3 5.9 65 71-135 14-80 (157)
351 TIGR00956 3a01205 Pleiotropic 99.7 1.9E-17 4.2E-22 166.7 5.7 119 70-189 75-221 (1394)
352 cd03238 ABC_UvrA The excision 99.7 5.6E-17 1.2E-21 130.3 6.6 90 69-189 8-99 (176)
353 KOG0059 Lipid exporter ABCA1 a 99.7 9E-17 1.9E-21 156.0 7.3 119 71-189 580-710 (885)
354 PRK11147 ABC transporter ATPas 99.7 5.1E-17 1.1E-21 152.6 4.6 117 71-189 18-168 (635)
355 KOG0061 Transporter, ABC super 99.7 1.7E-16 3.6E-21 148.8 7.2 116 71-189 45-182 (613)
356 COG0488 Uup ATPase components 99.6 1.8E-16 3.9E-21 146.2 7.0 100 78-189 26-165 (530)
357 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.3E-16 2.8E-21 123.7 5.1 54 71-135 15-70 (144)
358 PLN03140 ABC transporter G fam 99.6 1.3E-16 2.9E-21 161.0 5.6 117 70-189 179-348 (1470)
359 cd03278 ABC_SMC_barmotin Barmo 99.6 1.2E-16 2.7E-21 130.0 2.8 94 80-189 22-125 (197)
360 COG5265 ATM1 ABC-type transpor 99.6 7.5E-16 1.6E-20 137.1 6.6 122 65-189 272-411 (497)
361 TIGR01271 CFTR_protein cystic 99.6 6.4E-16 1.4E-20 156.6 6.9 107 70-189 440-560 (1490)
362 PLN03073 ABC transporter F fam 99.6 1.3E-15 2.7E-20 145.1 8.3 119 71-189 192-356 (718)
363 PLN03232 ABC transporter C fam 99.6 8.8E-16 1.9E-20 155.7 6.8 102 70-189 631-752 (1495)
364 TIGR00957 MRP_assoc_pro multi 99.6 1.2E-15 2.5E-20 155.0 6.9 101 70-189 652-772 (1522)
365 PTZ00243 ABC transporter; Prov 99.6 1.9E-15 4.2E-20 153.6 7.7 106 71-189 675-794 (1560)
366 COG4615 PvdE ABC-type sideroph 99.6 4.1E-15 8.8E-20 131.9 8.0 106 80-189 348-460 (546)
367 COG0488 Uup ATPase components 99.6 5.7E-15 1.2E-19 136.3 8.3 112 67-189 333-451 (530)
368 PLN03130 ABC transporter C fam 99.6 3.6E-15 7.7E-20 152.1 7.2 101 70-189 631-752 (1622)
369 KOG0054 Multidrug resistance-a 99.5 1.3E-14 2.9E-19 144.4 7.8 124 64-188 1148-1286(1381)
370 KOG0054 Multidrug resistance-a 99.5 1.7E-14 3.8E-19 143.5 8.5 100 71-189 536-655 (1381)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.5 4.4E-15 9.6E-20 123.2 3.6 100 81-189 23-170 (243)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.5 4.8E-15 1E-19 124.2 2.7 109 81-189 25-178 (251)
373 cd03279 ABC_sbcCD SbcCD and ot 99.5 5.9E-15 1.3E-19 121.0 1.6 112 73-189 18-135 (213)
374 COG1245 Predicted ATPase, RNas 99.5 6.7E-14 1.4E-18 125.9 5.3 95 79-189 365-467 (591)
375 cd03270 ABC_UvrA_I The excisio 99.4 7E-14 1.5E-18 115.8 4.8 31 159-189 118-149 (226)
376 KOG0927 Predicted transporter 99.4 7.2E-14 1.6E-18 127.5 5.0 112 66-189 400-521 (614)
377 PRK10463 hydrogenase nickel in 99.4 1.2E-13 2.6E-18 118.8 4.9 111 69-188 91-202 (290)
378 KOG0065 Pleiotropic drug resis 99.4 5.7E-13 1.2E-17 131.3 7.4 121 66-189 802-941 (1391)
379 COG4178 ABC-type uncharacteriz 99.4 9E-13 1.9E-17 122.5 7.2 106 70-189 407-527 (604)
380 COG1245 Predicted ATPase, RNas 99.3 4.2E-12 9.2E-17 114.4 6.4 111 74-189 93-225 (591)
381 COG1129 MglA ABC-type sugar tr 99.3 8.3E-12 1.8E-16 114.1 7.3 117 72-188 275-412 (500)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.2 1.8E-13 4E-18 112.6 -4.4 94 82-189 26-139 (212)
383 cd03271 ABC_UvrA_II The excisi 99.2 1E-11 2.2E-16 105.6 6.1 34 156-189 147-181 (261)
384 KOG0066 eIF2-interacting prote 99.2 7.9E-12 1.7E-16 112.6 5.4 114 65-189 596-716 (807)
385 cd03240 ABC_Rad50 The catalyti 99.2 2.4E-12 5.3E-17 105.2 1.9 100 72-186 15-124 (204)
386 COG3845 ABC-type uncharacteriz 99.2 5.8E-11 1.3E-15 107.6 8.1 119 70-188 272-414 (501)
387 KOG0060 Long-chain acyl-CoA tr 99.2 2.2E-11 4.8E-16 112.1 5.3 109 73-189 452-582 (659)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.2 1.1E-11 2.5E-16 103.7 3.1 34 81-114 22-56 (247)
389 cd00820 PEPCK_HprK Phosphoenol 99.1 2.8E-11 6.1E-16 90.0 3.6 60 72-136 5-65 (107)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.1 3E-11 6.4E-16 98.4 4.1 97 82-189 22-121 (198)
391 TIGR00101 ureG urease accessor 99.1 2.5E-10 5.5E-15 93.2 6.7 98 83-180 3-101 (199)
392 KOG0064 Peroxisomal long-chain 99.1 1.1E-10 2.3E-15 107.0 4.7 106 71-189 497-624 (728)
393 COG4170 SapD ABC-type antimicr 99.0 9.9E-11 2.1E-15 97.2 3.1 124 66-189 17-170 (330)
394 KOG0927 Predicted transporter 99.0 3.6E-10 7.9E-15 103.5 6.1 124 65-189 85-233 (614)
395 COG0378 HypB Ni2+-binding GTPa 99.0 2.3E-10 4.9E-15 93.2 3.2 100 82-188 14-114 (202)
396 KOG0062 ATPase component of AB 99.0 6.1E-10 1.3E-14 101.6 4.8 111 64-189 89-210 (582)
397 KOG0065 Pleiotropic drug resis 98.9 1.2E-09 2.7E-14 108.2 6.1 113 74-189 134-272 (1391)
398 KOG2355 Predicted ABC-type tra 98.9 1.2E-09 2.6E-14 90.4 4.8 113 69-188 27-158 (291)
399 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.8E-09 3.9E-14 98.5 4.5 63 73-138 23-88 (504)
400 TIGR02858 spore_III_AA stage I 98.9 2.2E-09 4.9E-14 91.7 4.6 56 82-137 112-169 (270)
401 KOG0063 RNAse L inhibitor, ABC 98.9 1.9E-09 4.2E-14 96.9 4.1 100 80-189 366-468 (592)
402 cd03280 ABC_MutS2 MutS2 homolo 98.8 1.5E-09 3.2E-14 88.2 3.0 32 71-102 18-49 (200)
403 COG2401 ABC-type ATPase fused 98.8 3.6E-09 7.7E-14 95.0 4.8 106 74-189 401-519 (593)
404 PRK10078 ribose 1,5-bisphospho 98.8 7E-09 1.5E-13 83.2 5.9 58 81-140 2-59 (186)
405 KOG0062 ATPase component of AB 98.8 4.8E-09 1E-13 95.8 5.1 93 82-189 391-494 (582)
406 cd02023 UMPK Uridine monophosp 98.8 6.7E-09 1.4E-13 83.7 4.5 89 83-185 1-91 (198)
407 TIGR00235 udk uridine kinase. 98.7 2.1E-08 4.6E-13 81.7 6.5 59 78-137 3-63 (207)
408 PRK00635 excinuclease ABC subu 98.7 1.7E-08 3.6E-13 103.7 6.7 33 156-189 788-821 (1809)
409 cd01130 VirB11-like_ATPase Typ 98.7 1.5E-08 3.2E-13 81.5 4.4 36 80-115 24-60 (186)
410 PRK09825 idnK D-gluconate kina 98.6 4.3E-08 9.3E-13 78.6 5.2 37 80-119 2-38 (176)
411 PRK00349 uvrA excinuclease ABC 98.6 5.6E-08 1.2E-12 95.3 6.9 32 158-189 810-842 (943)
412 PRK06002 fliI flagellum-specif 98.6 3.6E-08 7.8E-13 89.6 4.8 61 77-137 161-229 (450)
413 PRK06315 type III secretion sy 98.6 6.2E-08 1.4E-12 88.0 6.3 107 73-179 156-293 (442)
414 TIGR02524 dot_icm_DotB Dot/Icm 98.6 4.5E-08 9.8E-13 86.8 5.1 57 79-136 132-192 (358)
415 PF13555 AAA_29: P-loop contai 98.6 4E-08 8.6E-13 66.2 3.4 36 73-108 15-50 (62)
416 KOG0066 eIF2-interacting prote 98.6 6.2E-08 1.3E-12 87.9 4.9 121 69-189 278-424 (807)
417 cd03277 ABC_SMC5_euk Eukaryoti 98.6 2.5E-08 5.4E-13 82.2 2.2 26 81-106 23-48 (213)
418 PRK03846 adenylylsulfate kinas 98.6 8.2E-08 1.8E-12 77.8 5.0 59 76-138 19-79 (198)
419 PRK09270 nucleoside triphospha 98.6 9.7E-08 2.1E-12 79.1 5.4 40 79-118 31-72 (229)
420 TIGR00630 uvra excinuclease AB 98.5 7.1E-08 1.5E-12 94.5 4.8 32 158-189 808-840 (924)
421 cd03282 ABC_MSH4_euk MutS4 hom 98.5 2.6E-08 5.6E-13 81.8 1.4 37 69-105 16-53 (204)
422 cd03283 ABC_MutS-like MutS-lik 98.5 4.6E-08 1E-12 79.8 2.9 36 70-106 15-50 (199)
423 PRK10416 signal recognition pa 98.5 1.1E-07 2.4E-12 83.0 5.0 56 80-135 113-175 (318)
424 PRK00300 gmk guanylate kinase; 98.5 8.9E-08 1.9E-12 77.3 4.1 28 79-106 3-30 (205)
425 TIGR00554 panK_bact pantothena 98.5 1.4E-07 3.1E-12 81.4 5.2 43 81-123 62-107 (290)
426 TIGR02322 phosphon_PhnN phosph 98.5 1.7E-07 3.7E-12 74.2 5.1 33 81-113 1-33 (179)
427 cd02026 PRK Phosphoribulokinas 98.5 1.8E-07 3.9E-12 80.0 5.1 54 83-137 1-54 (273)
428 cd01128 rho_factor Transcripti 98.5 5.1E-07 1.1E-11 76.4 7.5 30 79-108 14-43 (249)
429 cd03285 ABC_MSH2_euk MutS2 hom 98.4 8.2E-08 1.8E-12 79.6 0.7 33 70-102 18-51 (222)
430 cd02025 PanK Pantothenate kina 98.4 4.8E-07 1E-11 75.0 4.6 36 83-118 1-39 (220)
431 cd03243 ABC_MutS_homologs The 98.4 2.6E-07 5.6E-12 75.0 2.9 34 70-104 19-52 (202)
432 PLN02796 D-glycerate 3-kinase 98.3 9.1E-07 2E-11 78.1 6.4 38 82-119 101-142 (347)
433 cd03239 ABC_SMC_head The struc 98.3 3.6E-07 7.7E-12 73.3 3.5 24 83-106 24-47 (178)
434 KOG0063 RNAse L inhibitor, ABC 98.3 2.7E-07 5.9E-12 83.3 1.4 115 74-189 93-225 (592)
435 PRK07721 fliI flagellum-specif 98.3 1.4E-06 3E-11 79.2 5.7 64 72-135 149-221 (438)
436 PRK07196 fliI flagellum-specif 98.2 7.2E-07 1.6E-11 80.9 3.1 68 71-138 145-222 (434)
437 PRK05480 uridine/cytidine kina 98.2 1.5E-06 3.3E-11 70.6 4.8 39 79-118 4-42 (209)
438 PRK08149 ATP synthase SpaL; Va 98.2 9.2E-07 2E-11 80.1 3.7 65 72-136 142-214 (428)
439 PRK06995 flhF flagellar biosyn 98.2 1.4E-06 3.1E-11 80.0 4.7 41 79-119 254-297 (484)
440 cd01854 YjeQ_engC YjeQ/EngC. 98.2 6.8E-07 1.5E-11 76.8 2.5 34 80-113 160-194 (287)
441 TIGR01069 mutS2 MutS2 family p 98.2 5E-07 1.1E-11 87.2 1.7 38 71-108 312-350 (771)
442 PRK01889 GTPase RsgA; Reviewed 98.2 1.9E-06 4.1E-11 76.3 5.0 39 79-117 193-232 (356)
443 TIGR03263 guanyl_kin guanylate 98.2 1.7E-06 3.7E-11 68.3 4.0 26 81-106 1-26 (180)
444 TIGR02788 VirB11 P-type DNA tr 98.2 1.9E-06 4.1E-11 74.7 4.5 35 80-114 143-178 (308)
445 cd03284 ABC_MutS1 MutS1 homolo 98.1 1.4E-06 3.1E-11 71.9 3.0 35 70-104 19-53 (216)
446 PRK00098 GTPase RsgA; Reviewed 98.1 1.4E-06 3E-11 75.3 3.0 34 80-113 163-197 (298)
447 PRK07960 fliI flagellum-specif 98.1 1.2E-06 2.6E-11 79.7 2.6 61 78-138 172-239 (455)
448 cd03281 ABC_MSH5_euk MutS5 hom 98.1 2.6E-06 5.6E-11 70.2 3.6 33 70-102 17-50 (213)
449 cd01136 ATPase_flagellum-secre 98.1 3.9E-06 8.5E-11 73.6 4.9 47 72-118 60-107 (326)
450 smart00382 AAA ATPases associa 98.1 6.3E-06 1.4E-10 59.9 4.9 28 81-108 2-29 (148)
451 PRK00889 adenylylsulfate kinas 98.1 3.8E-06 8.2E-11 66.4 3.8 39 79-117 2-41 (175)
452 TIGR00606 rad50 rad50. This fa 98.1 5.2E-06 1.1E-10 84.3 5.7 58 74-135 23-86 (1311)
453 cd04155 Arl3 Arl3 subfamily. 98.0 4.5E-06 9.8E-11 64.7 3.7 37 81-117 14-59 (173)
454 cd01131 PilT Pilus retraction 98.0 5.4E-06 1.2E-10 67.4 4.2 36 83-118 3-40 (198)
455 PRK07429 phosphoribulokinase; 98.0 8E-06 1.7E-10 71.7 5.3 28 81-108 8-35 (327)
456 TIGR02655 circ_KaiC circadian 98.0 8.3E-07 1.8E-11 81.5 -1.1 105 79-188 19-126 (484)
457 TIGR03498 FliI_clade3 flagella 98.0 6.6E-06 1.4E-10 74.4 4.7 40 79-118 138-178 (418)
458 cd03287 ABC_MSH3_euk MutS3 hom 98.0 5E-06 1.1E-10 69.2 3.2 42 70-111 19-63 (222)
459 PRK11545 gntK gluconate kinase 98.0 5.2E-06 1.1E-10 65.5 3.2 47 87-137 1-47 (163)
460 PRK14721 flhF flagellar biosyn 98.0 5.7E-06 1.2E-10 74.9 3.8 29 77-105 187-215 (420)
461 PLN02165 adenylate isopentenyl 98.0 8.9E-06 1.9E-10 71.5 4.8 48 75-122 37-89 (334)
462 TIGR00073 hypB hydrogenase acc 98.0 6.7E-06 1.5E-10 67.0 3.7 48 71-118 11-59 (207)
463 TIGR00455 apsK adenylylsulfate 98.0 7.8E-06 1.7E-10 65.2 4.0 42 77-118 14-57 (184)
464 cd04159 Arl10_like Arl10-like 98.0 6.7E-06 1.4E-10 61.7 3.3 21 84-104 2-22 (159)
465 PRK14722 flhF flagellar biosyn 97.9 9.2E-06 2E-10 72.5 4.5 45 76-120 132-179 (374)
466 PRK08533 flagellar accessory p 97.9 1.1E-05 2.4E-10 67.2 4.7 36 79-114 22-59 (230)
467 PRK09435 membrane ATPase/prote 97.9 1E-05 2.3E-10 71.1 4.7 41 80-120 55-96 (332)
468 TIGR01360 aden_kin_iso1 adenyl 97.9 5.4E-06 1.2E-10 65.5 2.5 32 81-112 3-38 (188)
469 PRK04863 mukB cell division pr 97.9 8.6E-06 1.9E-10 83.3 4.5 41 77-117 23-64 (1486)
470 PLN02318 phosphoribulokinase/u 97.9 8.3E-06 1.8E-10 76.6 4.0 36 82-117 66-101 (656)
471 PRK07594 type III secretion sy 97.9 9.6E-06 2.1E-10 73.7 4.2 48 70-117 144-192 (433)
472 PRK05541 adenylylsulfate kinas 97.9 8.4E-06 1.8E-10 64.4 3.3 41 77-117 3-45 (176)
473 PRK14723 flhF flagellar biosyn 97.9 8.9E-06 1.9E-10 78.3 4.0 41 80-120 184-227 (767)
474 TIGR01026 fliI_yscN ATPase Fli 97.9 1.4E-05 3E-10 72.8 5.0 48 71-118 153-201 (440)
475 TIGR02546 III_secr_ATP type II 97.9 1.3E-05 2.8E-10 72.7 4.8 47 72-118 136-183 (422)
476 PLN03046 D-glycerate 3-kinase; 97.9 9.7E-06 2.1E-10 73.5 3.8 38 81-118 212-253 (460)
477 PRK09099 type III secretion sy 97.9 1.4E-05 3E-10 72.8 4.8 40 78-117 160-200 (441)
478 PRK05922 type III secretion sy 97.9 1.4E-05 3E-10 72.6 4.6 44 74-117 150-194 (434)
479 PRK00635 excinuclease ABC subu 97.9 1.8E-05 3.8E-10 82.0 5.6 31 158-188 1679-1710(1809)
480 cd03227 ABC_Class2 ABC-type Cl 97.9 1.2E-05 2.5E-10 63.2 3.4 35 71-106 12-46 (162)
481 cd04104 p47_IIGP_like p47 (47- 97.9 1.1E-05 2.4E-10 65.2 3.3 31 83-113 3-34 (197)
482 cd01120 RecA-like_NTPases RecA 97.9 1.3E-05 2.8E-10 60.8 3.4 36 83-118 1-37 (165)
483 TIGR03496 FliI_clade1 flagella 97.8 1.8E-05 3.9E-10 71.5 4.7 40 78-117 134-174 (411)
484 TIGR00750 lao LAO/AO transport 97.8 1.8E-05 4E-10 68.3 4.5 47 73-119 25-73 (300)
485 PRK09862 putative ATP-dependen 97.8 2E-05 4.3E-10 72.9 4.9 44 75-118 203-248 (506)
486 PF03193 DUF258: Protein of un 97.8 1.8E-05 3.8E-10 63.0 3.9 33 80-112 34-67 (161)
487 PRK10751 molybdopterin-guanine 97.8 1.3E-05 2.8E-10 64.4 3.0 35 82-116 7-45 (173)
488 TIGR03497 FliI_clade2 flagella 97.8 2.1E-05 4.6E-10 71.1 4.7 46 73-118 129-175 (413)
489 cd00071 GMPK Guanosine monopho 97.8 1.4E-05 3E-10 61.4 3.1 26 83-108 1-26 (137)
490 PF13207 AAA_17: AAA domain; P 97.8 1.4E-05 3.1E-10 58.8 3.0 23 83-105 1-23 (121)
491 cd01672 TMPK Thymidine monopho 97.8 2.8E-05 6.1E-10 61.4 4.7 28 83-110 2-29 (200)
492 cd00879 Sar1 Sar1 subfamily. 97.8 1.8E-05 3.9E-10 62.6 3.5 30 74-103 12-41 (190)
493 cd03114 ArgK-like The function 97.8 2.1E-05 4.5E-10 61.3 3.6 37 83-119 1-38 (148)
494 TIGR00176 mobB molybdopterin-g 97.8 1.9E-05 4.1E-10 62.1 3.4 34 83-116 1-35 (155)
495 cd01876 YihA_EngB The YihA (En 97.8 1.5E-05 3.3E-10 60.3 2.7 25 84-108 2-28 (170)
496 TIGR00150 HI0065_YjeE ATPase, 97.8 2.6E-05 5.7E-10 60.1 4.0 29 79-107 20-48 (133)
497 TIGR03499 FlhF flagellar biosy 97.8 2.4E-05 5.3E-10 67.1 4.2 44 75-118 188-234 (282)
498 TIGR03015 pepcterm_ATPase puta 97.8 4.3E-05 9.4E-10 63.8 5.5 29 80-108 42-70 (269)
499 PRK08472 fliI flagellum-specif 97.8 2.8E-05 6E-10 70.7 4.6 46 73-118 149-195 (434)
500 TIGR02903 spore_lon_C ATP-depe 97.8 7E-05 1.5E-09 70.9 7.3 38 81-118 175-221 (615)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=2.1e-29 Score=212.72 Aligned_cols=121 Identities=27% Similarity=0.323 Sum_probs=106.6
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
.....+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|+++.+.+.+++.+.++||||.+.
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence 34455566655 48999999999999999999999999998 999999999999999999999999999964
Q ss_pred HHHHhcCCCCCCh-----HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~-----~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.+|+.++..+ ++|.+.+.++|+.+++....++.+.+|||||||||.|+
T Consensus 95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iA 150 (258)
T COG1120 95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA 150 (258)
T ss_pred ehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHH
Confidence 6788888876654 45777899999999999999999999999999999764
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=7.7e-28 Score=197.69 Aligned_cols=119 Identities=20% Similarity=0.179 Sum_probs=96.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC-chHHHhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~--------~ 139 (189)
...++++.- +||+++|+||+|||||||||||.+|.+|+ |+|.|+|.++... +..++|+++|+|||+++ +
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 344455444 59999999999999999999999999999 9999999877432 45567889999999987 4
Q ss_pred HHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.++-. ..+...+..+++.++|+++||.+..+.+|.+|||||||||||+
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence 4444322 1223355677899999999999999999999999999999985
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-27 Score=200.08 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=96.4
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------- 138 (189)
++..+++|. ++|++++||||||||||||||+|+|+++|. |+|.+.+.++.... .+.+||||||...
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~---~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc---cCCeEEEcCcccccCCCCCcCH
Confidence 466777774 458999999999999999999999999998 99999998774321 1358999999653
Q ss_pred -HHHHhcCCCCCCh-----HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~~~~-----~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.+|......+ +++.+++.++|+++++.+..++.+.+|||||+|||-|+
T Consensus 95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH
Confidence 5666765544332 46788999999999999999999999999999999764
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.3e-27 Score=206.05 Aligned_cols=117 Identities=13% Similarity=0.023 Sum_probs=99.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..++++.- +||+++|+||||||||||||+|+||++|+ |+|.|+|.+++..++.+ |.|++|||+++ +|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence 444555554 59999999999999999999999999999 99999999998877765 68999999986 56
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++++.|+|+..++++|.+||||||||||++
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence 6665432 223456688999999999999999999999999999999974
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4e-27 Score=195.43 Aligned_cols=121 Identities=18% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH----
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI---- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~---- 138 (189)
..+...++|.- +||+++|+||+||||||||++|.|+.+|+ |.|.|+|.++...+..++ ++.||||||+.+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 34555666655 49999999999999999999999999999 999999999987775443 458999999976
Q ss_pred ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhc-cccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNLFKAD-LLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~-~~~~eLSGGqrq~~~~i 189 (189)
+|+.+.... .........++.++++.|+|.+... ++|.+|||||||||||+
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 566543211 1111135667888999999987666 89999999999999985
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3e-27 Score=197.59 Aligned_cols=116 Identities=17% Similarity=0.067 Sum_probs=95.3
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+..+++|.- +||+++||||+|||||||||+|+|+++|+ |+|.++|..+.. ....++||||++.
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----CCCCEEEEeccCcccchhhHH
Confidence 44555666665 49999999999999999999999999999 999999998732 2347999999976
Q ss_pred HHHHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.++.... ....+..+++.++|+.+||....+++|.+|||||||||||+
T Consensus 91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHH
Confidence 6666665432 23344556899999999999999999999999999999984
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=4.3e-27 Score=206.25 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=99.8
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+..++++.- +||+++|+||||||||||||+|+|+..|+ |+|.++|++++..++. +|.||+|||+.+
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcHH
Confidence 34455555544 58999999999999999999999999999 9999999999876654 478999999976
Q ss_pred HHHHhcCCCCC--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+||.+|..... ...+..+++.++|+.++|....+++|.+||||||||||++
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHH
Confidence 78888876221 1234567999999999999999999999999999999974
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.9e-27 Score=200.05 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=101.5
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-----
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI----- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~----- 138 (189)
..+.++++|.-+ |+++||||.+|||||||+|||.+|.+|+ |+|.++|.++..++..+ +|++||++||.++
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 456677777665 9999999999999999999999999999 99999999998776554 4679999999987
Q ss_pred ---HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+... ......+...++.++|+.+||.+..+++|.+|||||||||+|+
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence 34444332 1233456778999999999999999999999999999999984
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=8.5e-27 Score=195.69 Aligned_cols=121 Identities=16% Similarity=0.059 Sum_probs=100.1
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+.++++|.- +||+++||||+||||||+||+|.+|+.|+ |+|.++|.++...+..++|++||||.|...
T Consensus 14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~ 93 (309)
T COG1125 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA 93 (309)
T ss_pred ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence 44556666655 58999999999999999999999999999 999999999999999999999999999854
Q ss_pred HHHHhc-CCCCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723 139 RAVETG-GCPHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+- ....+..++..+++.++|+.++|+. ..+++|.||||||||||.++
T Consensus 94 eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 94 ENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 343331 1122333566788999999999974 78999999999999999764
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.4e-26 Score=189.93 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=100.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------- 138 (189)
+..+++|+- +||+++|||++|||||||||+|.|+..|+ |+|.+++.++.....++ +++.|||+||.++
T Consensus 19 aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv 98 (258)
T COG3638 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSV 98 (258)
T ss_pred eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHH
Confidence 444555544 59999999999999999999999999999 99999999998776554 4678999999987
Q ss_pred -HHHHhcCCCCCCh---------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~~~~---------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+..|...+..+ +++..++.++|++|||.+.+..+..+|||||||||+|+
T Consensus 99 ~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 99 LENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred HHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 6677766554432 67888999999999999999999999999999999984
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.7e-26 Score=194.62 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=98.5
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCCchHHHhhhceeccchhH-----
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI----- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~~~~~~~~~iG~v~Q~~~----- 138 (189)
..+..++++.-+ ||+++|+|||||||||||++|+||+.|+ |.|.+++. |.+. .....|+||||||+..
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhhcceeEEEechhhcccc
Confidence 334446666655 8999999999999999999999999999 99999999 5543 2344579999999986
Q ss_pred ---HHHHhcCCCC---CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPH---AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~---~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+||.||.... ....+.+.++.++|+.+.|+...+++|.+||||||||||++
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHH
Confidence 7788886443 22245678899999999999999999999999999999974
No 12
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=9.1e-26 Score=182.46 Aligned_cols=121 Identities=18% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-----
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI----- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~----- 138 (189)
..+..+++|.- +||++-|+||+|||||||||+|++..+|+ |+|.+++.|+......+ ++|+||+|||+.-
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 44566677765 49999999999999999999999999999 99999999998766555 4789999999964
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+...- ....++..+++.++|+.+||....+..|.+|||||||||+|+
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 455443321 122355678899999999999999999999999999999984
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=187.74 Aligned_cols=121 Identities=18% Similarity=0.081 Sum_probs=99.8
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC-CchHHHhhhceeccchhH-------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~-~~~~~~~~~iG~v~Q~~~------- 138 (189)
.++..+++|.- +|++++|+|+||||||||+++|+|+++|+ |.|.++|.++.. .+..++++++|||||+|.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 44555555555 49999999999999999999999999999 999999998862 567788999999999996
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.++... .+...+..+++.++|+.+++...+++.+.+|||||||||+|+
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhh
Confidence 334455433 223345678899999999999999999999999999999985
No 14
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=3.7e-25 Score=178.24 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=96.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA 150 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~ 150 (189)
.||+++|+||+||||||||++|+|++.|. |.|.|+|.|.+...+.+ |-+.++||+.+ +|+.+|..+.+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk 101 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQENNLFAHLTVAQNIGLGLSPGLK 101 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhccccchhhhhhhhhcccCCcccc
Confidence 58999999999999999999999999998 99999999998766654 56889999976 677777777766
Q ss_pred h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 151 I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 151 ~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. .++.+++..++.++||....+++|.+||||||||||++
T Consensus 102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALA 141 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALA 141 (231)
T ss_pred cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHH
Confidence 5 56788999999999999999999999999999999974
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=6.7e-25 Score=188.74 Aligned_cols=120 Identities=22% Similarity=0.195 Sum_probs=97.4
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+.++++|.-+ |+++||+||||||||||||+|+|+++|+ |+|.++|.++... ..+.++.+|||+|++.
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHH
Confidence 446677777765 8999999999999999999999999999 9999999998643 5677889999999986
Q ss_pred HHHHhcCCCCCCh-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+....+... ..+.+++.++|+.++|....++++.+||+|||||++|+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence 4444432222211 23567899999999999766889999999999999874
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.91 E-value=9.7e-25 Score=191.55 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=96.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------ 138 (189)
.+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++++|+|+||++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 4567777764 59999999999999999999999999998 99999999997655443 4668999999965
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 44444321 1122334556788999999999899999999999999999974
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-24 Score=190.69 Aligned_cols=117 Identities=15% Similarity=-0.013 Sum_probs=94.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+. ++.|+||||++. +|
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHHH
Confidence 445566655 58999999999999999999999999998 9999999998655443 368999999875 55
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 5554321 122233456788999999999899999999999999999974
No 18
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=1.6e-24 Score=191.51 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=96.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------ 138 (189)
+..+++|.- +||+++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++||||++.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 445566654 59999999999999999999999999999 999999999987766655 668999999865
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lA 141 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLA 141 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHH
Confidence 445443211 122233456789999999999889999999999999999874
No 19
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.3e-24 Score=178.47 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=91.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|++|++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV 94 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence 445566654 59999999999999999999999999998 999999998865443 345678999999864
Q ss_pred -HHHHhcCCC--CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 333332111 112223345688899999998888999999999999999874
No 20
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=3.5e-24 Score=172.13 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=89.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|++|++.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence 445555554 59999999999999999999999999998 999999988742 122345668999999873
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 139 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIA 139 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHH
Confidence 233222111 111122345678899999998888999999999999999874
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=3e-24 Score=178.94 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhHH-------
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIR------- 139 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~~------- 139 (189)
.+.++++|+-. ||++||+|++|||||||.++|+|+.+|+ |+|.++|..+.... ...+.+.|.+|||+|..
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 57788888765 9999999999999999999999999999 99999998775432 33567889999999861
Q ss_pred ---HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 ---AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ---~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.+...... ....+..+++.++|+.++|.. .++++|.+|||||+||++|+
T Consensus 101 v~~~l~Epl~~-~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 101 VGRILSEPLRP-HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred HHHHHhhhhcc-CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 11111111 112234455899999999975 78999999999999999985
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=2.3e-24 Score=179.51 Aligned_cols=120 Identities=22% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------ 138 (189)
....+++|.- +||+++|+||+|||||||||+|.|+++|+ |+|.++|.++...+..+ +++++|++||.-+
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFsslt 101 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT 101 (263)
T ss_pred EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccc
Confidence 3445556554 59999999999999999999999999999 99999999998776543 4678999999865
Q ss_pred --HHHHhcCCCCCCh--HHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPHAAI--REDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~~~~--~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+....+... +...+.+...|+.+||... .+++|.||||||++||+|+
T Consensus 102 V~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 102 VFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred hhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 5555544444332 3455677888999999876 8999999999999999974
No 23
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=4.2e-24 Score=173.86 Aligned_cols=119 Identities=18% Similarity=0.068 Sum_probs=91.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+...+++.++|++|++. +
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~ 95 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence 455666664 69999999999999999999999999998 999999998865545556778999999863 2
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+.... .........++.++++.++|....++++.+||||||||++|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 146 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146 (211)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 22221100 011122345678899999998888999999999999999874
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=3.1e-24 Score=175.41 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=91.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.. .+++.++|++|++.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 455566654 69999999999999999999999999998 9999999987543322 35678999999864
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... ........+++.++++.++|....++++.+||||||||++|+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 233322110 111123456788999999998888999999999999999874
No 25
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=5.1e-24 Score=190.51 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=99.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
...++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++......++++.++|++|++. +
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e 96 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ 96 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH
Confidence 3556667764 59999999999999999999999999998 999999999977777778889999999865 4
Q ss_pred HHHhcCCCCC---C--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~---~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++..++. . ...+.+++.++|+.++|....++++.+||||||||++|+
T Consensus 97 ~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 97 VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 5555543321 1 134567889999999999889999999999999999874
No 26
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=5.6e-24 Score=173.95 Aligned_cols=119 Identities=19% Similarity=0.116 Sum_probs=90.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH----HhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~----~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....... +++.++|++|++.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 455666654 59999999999999999999999999998 99999999886544322 3457999999864
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... ........+++.++++.++|....++.+.+||||||||++|+
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 333332111 111122345788899999998888999999999999999874
No 27
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=5.7e-24 Score=183.01 Aligned_cols=118 Identities=21% Similarity=0.174 Sum_probs=92.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||+||++. ++
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 456666664 69999999999999999999999999998 999999998854 33456678999999864 33
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 136 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIA 136 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHH
Confidence 333211 1112223345788999999999888999999999999999874
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.9e-24 Score=187.08 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=94.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .+++|+||||++. +|
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCHHHH
Confidence 445566655 58999999999999999999999999998 999999999865443 3468999999875 55
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus 99 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 99 VGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred HHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 5554321 122234456889999999999889999999999999999974
No 29
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.9e-24 Score=174.40 Aligned_cols=118 Identities=20% Similarity=0.175 Sum_probs=90.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
..++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++. ++
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcHHHH
Confidence 455666664 59999999999999999999999999998 999999988754 23455678999999864 22
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 143 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIA 143 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHH
Confidence 322211 0111223455788999999998888999999999999999874
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=5.4e-24 Score=187.42 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=94.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+ .++.++||||++. +|
T Consensus 19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLTVADN 96 (353)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCcHHHH
Confidence 455666665 59999999999999999999999999998 999999999865443 3568999999975 55
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+...++.++++.++|....++++.+|||||||||+|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence 5554321 122234456889999999999999999999999999999974
No 31
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.1e-24 Score=173.05 Aligned_cols=110 Identities=23% Similarity=0.233 Sum_probs=99.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA 150 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~ 150 (189)
+|.+++|||||||||||||.++++|++.+ |+|+++|.++...+..++.+++..+-|+.. +.+.||++|+-.
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 68999999999999999999999999998 999999999999999999999999999865 667788887653
Q ss_pred h---HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 151 I---REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 151 ~---~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
- .+|...+.++++.|.|++..++++.+||||||||+-++
T Consensus 106 GRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 106 GRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred CCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhh
Confidence 2 57888999999999999999999999999999998653
No 32
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.2e-24 Score=179.90 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=94.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. +
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 455666663 69999999999999999999999999998 999999999865556667789999999873 3
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... .....+..+++.++|+.++|....++.+.+||||||||++|+
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 33333211 122233456788999999999889999999999999999974
No 33
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=179.00 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=93.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. +
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 99 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD 99 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH
Confidence 55566666 369999999999999999999999999998 999999998866556666778999999873 3
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... .........++.++|+.++|....++++.+||||||||++|+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHH
Confidence 33332111 111123345688899999998889999999999999999874
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.7e-24 Score=172.15 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=89.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|+||++. ++
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHH
Confidence 455666664 59999999999999999999999999998 999999998854332 3467999999865 23
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.... ........+++.++++.++|....++++.+||||||||++|+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 3222111 111123345678899999998888999999999999999874
No 35
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=1.4e-23 Score=171.13 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=90.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++...... .+++.++|++|++.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV 96 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcH
Confidence 45566666 469999999999999999999999999998 9999999988654332 34568999999865
Q ss_pred -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ..........++.++++.++|....++.+.+||||||||++|+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 97 YENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 22222211 0111222345788899999998888999999999999999874
No 36
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=1.2e-23 Score=173.93 Aligned_cols=119 Identities=22% Similarity=0.143 Sum_probs=91.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ ++.++|+||++. +
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~ 94 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE 94 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence 44555665 369999999999999999999999999998 999999998865554443 356999999864 3
Q ss_pred HHHhcCCCCC-----------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHA-----------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~-----------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+...... ...+..+++.++++.++|....++++.+||||||||++|+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH
Confidence 3333221110 1123345688899999998888999999999999999874
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.89 E-value=1e-23 Score=185.61 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++||||++. ++
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHHH
Confidence 456666664 69999999999999999999999999998 999999999865432 3468999999865 55
Q ss_pred HHhcCCC-----CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-----~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 5554321 122234456889999999999889999999999999999974
No 38
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=1e-23 Score=182.12 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=93.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.|+|.++... ..+.++.|||+||++. +
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-ARHARQRVGVVPQFDNLDPDFTVRE 99 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc-hHHHHhcEEEEeccCcCCCCCcHHH
Confidence 3556677765 59999999999999999999999999998 9999999998643 3456788999999865 3
Q ss_pred HHHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+ +........+...++.++++.++|....++++.+||+|||||++|+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHH
Confidence 4332 2111122233456778999999999889999999999999999874
No 39
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.2e-23 Score=172.64 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=91.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc---hHHHhhhceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~~------- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 45555665 369999999999999999999999999998 99999999886544 2345678999999864
Q ss_pred -HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... .......+++.++++.++|....++.+.+||||||||++|+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH
Confidence 3333322110 00123345678899999998888999999999999999874
No 40
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=1.4e-23 Score=170.42 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=88.0
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ..+++.++|++|++. +
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHH
Confidence 45566665 369999999999999999999999999998 999999988742 345668999999963 2
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+.... ......++.++++.++|....++++.+||+|||||++|+
T Consensus 92 ~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (205)
T cd03226 92 ELLLGLKE---LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA 138 (205)
T ss_pred HHhhhhhh---cCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence 22221100 011235688999999999888999999999999999874
No 41
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.89 E-value=1.2e-23 Score=186.52 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=93.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+. ++.++||||++. +|
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCCCHHHH
Confidence 344555554 59999999999999999999999999998 9999999998654433 468999999975 55
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus 107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 5554321 122233356788999999999899999999999999999974
No 42
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-23 Score=173.41 Aligned_cols=119 Identities=16% Similarity=0.087 Sum_probs=91.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++ +.++|+||++.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 455666664 59999999999999999999999999998 99999999886554432 22 57999999864
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++|+.++|....++.+.+||||||||++|+
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 33333211 1112223446788999999998888999999999999999874
No 43
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=1.4e-23 Score=171.88 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=90.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------ 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++ +.++|++|++.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 99 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT 99 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence 45566666 469999999999999999999999999998 99999999886544333 23 57999999864
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++++.++|....++.+.+||||||||++|+
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 33332211 1112223455678899999998888999999999999999874
No 44
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=2.8e-23 Score=172.38 Aligned_cols=119 Identities=23% Similarity=0.203 Sum_probs=91.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|+||++.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV 96 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH
Confidence 455666663 59999999999999999999999999998 999999988754332 234668999999864
Q ss_pred -HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... .......+++.++++.++|....++.+.+||||||||++|+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 97 LENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred HHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 3333322110 00123456788899999998888999999999999999974
No 45
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.7e-23 Score=178.94 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=92.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~------- 138 (189)
.+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ...+++.||||||++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 3556666663 59999999999999999999999999998 99999999886432 2456779999999863
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|. ...++++.+||||||||++|+
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 233322111 122233445788999999997 568999999999999999874
No 46
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=1.8e-23 Score=170.30 Aligned_cols=119 Identities=18% Similarity=0.101 Sum_probs=91.1
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|++|++.
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 45566666 369999999999999999999999999998 999999998865433 235678999999874
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 233222110 111223345678899999998888999999999999999874
No 47
>PRK10908 cell division protein FtsE; Provisional
Probab=99.89 E-value=2.1e-23 Score=171.27 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=90.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV 96 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence 455666664 69999999999999999999999999998 9999999988654332 24678999999864
Q ss_pred -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+...++.++|+.+++....++.+.+||+|||||++|+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHH
Confidence 23332211 1111223345677899999998888999999999999999874
No 48
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=7.2e-24 Score=169.08 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=103.4
Q ss_pred CCCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH
Q 029723 63 GYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (189)
Q Consensus 63 g~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~ 140 (189)
||.....+..|+++|.-. ||+++|+||+|||||||||+++.++.|+ |.++|.|+++.+..+.++|+.|.|+.|.|..+
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 455555667788888765 9999999999999999999999999999 99999999999999999999999999998621
Q ss_pred HHhc----CCCCC--ChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 141 VETG----GCPHA--AIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g----~~~~~--~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
-.+- .+++. ..+.|...+..+|+++++.. .+++.+.+|||||+||+++|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAli 145 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALI 145 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHH
Confidence 1100 01111 01236778889999999975 68999999999999999985
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.8e-23 Score=183.27 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=92.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------- 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.|+|+||++.
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv 99 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence 455666654 59999999999999999999999999998 99999999986554433 3568999999864
Q ss_pred -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 34433211 1122223446788999999999888999999999999999874
No 50
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.89 E-value=3e-23 Score=168.90 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=90.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|++|++.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL 94 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence 445566654 69999999999999999999999999998 999999988742 123345678999999864
Q ss_pred HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++++.+++....++++.+||+||+||++|+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 33332211 1111223445678899999998888999999999999999874
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.7e-23 Score=171.61 Aligned_cols=120 Identities=19% Similarity=0.112 Sum_probs=92.1
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------ 138 (189)
....+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 355666666 459999999999999999999999999998 9999999988654433 23568999999864
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ...........+.++|+.++|....++++.+||+|||||++|+
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence 33332211 1111222345678899999998888999999999999999874
No 52
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.2e-23 Score=176.71 Aligned_cols=119 Identities=15% Similarity=0.043 Sum_probs=94.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.|+|+||++. +
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 101 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD 101 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence 455666663 59999999999999999999999999998 999999999876555566778999999873 3
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... .....+...++.++|+.++|....++++.+||+|||||++|+
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence 33332111 112233346688999999999889999999999999999874
No 53
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.9e-23 Score=185.41 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=94.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++....+ .++.+||+||++. +|
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCCCHHHH
Confidence 455666664 59999999999999999999999999998 999999998865433 4568999999975 55
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++++.++|....++++.+|||||||||+|+
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 6554321 122233456788999999999899999999999999999974
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=1.7e-23 Score=171.07 Aligned_cols=119 Identities=18% Similarity=0.058 Sum_probs=92.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.++|+||++. +
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence 3555666663 59999999999999999999999999998 999999998853 34456678999999864 2
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... ......+...++.++++.++|....++.+.+||||||||++|+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHH
Confidence 3322111 1111223356788899999998888999999999999999874
No 55
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.1e-23 Score=170.37 Aligned_cols=118 Identities=21% Similarity=0.201 Sum_probs=101.7
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i 141 (189)
.+.++|.- +||+++|+||||||||||||.|+|.+.|+ |++.++|.++....+.++.+..++++|+.. +.+
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV 96 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVV 96 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHH
Confidence 34555554 48999999999999999999999999999 999999999998899999999999999864 678
Q ss_pred HhcCCCCCCh---HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~---~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+|..++-.- .++...+..+|+..++..+..+...+|||||||||.|+
T Consensus 97 ~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 97 QMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred HhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHH
Confidence 8888776432 35666788999999999999999999999999999874
No 56
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=184.22 Aligned_cols=117 Identities=16% Similarity=-0.014 Sum_probs=92.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.|+||||++. ++
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEeCCcccCCCCCHHHH
Confidence 445566654 59999999999999999999999999998 999999998864433 2467999999864 44
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (369)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 5443221 122233456788999999999889999999999999999974
No 57
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=179.07 Aligned_cols=121 Identities=18% Similarity=0.104 Sum_probs=102.0
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH----
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI---- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~---- 138 (189)
..-.++.+|.-. |||+.|+|-+|||||||+|+|.+|+.|+ |+|.++|.|+...+.+++ ++++++|||...
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 344567777765 8999999999999999999999999999 999999999998887765 348999999875
Q ss_pred ----HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+|.. ......+..+++.++|+.+||..+.+++|.+|||||||||.++
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLA 176 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLA 176 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHH
Confidence 56666643 2334456678899999999999999999999999999999763
No 58
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-23 Score=171.91 Aligned_cols=119 Identities=16% Similarity=0.066 Sum_probs=91.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. ++
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN 95 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence 444555554 69999999999999999999999999998 999999998865555556678999999864 33
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ..........++.++++.++|.. ..++++.+||+|||||++|+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 333211 11112233456889999999985 78999999999999999874
No 59
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.1e-23 Score=172.73 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=93.0
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------- 138 (189)
..+...++|.- +|||++|+|+||+||||||++|+|++++. |+|.+.|.|++...+.++ ++.|+||||.+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 44455566655 59999999999999999999999999997 999999999998877765 558999999875
Q ss_pred -HHHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.++.............++++++.|- |.+..+++..+|||||||.+||+
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 6666654332211111222566666664 56788999999999999999873
No 60
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.7e-23 Score=175.27 Aligned_cols=120 Identities=15% Similarity=0.072 Sum_probs=93.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------- 138 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 3556666664 69999999999999999999999999998 999999998865555566778999999873
Q ss_pred HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++++.++|....++.+.+||+|||||++|+
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 233222111 112222345678899999999889999999999999999874
No 61
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4e-23 Score=175.55 Aligned_cols=119 Identities=18% Similarity=0.040 Sum_probs=92.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhH---------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~--------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 556666663 59999999999999999999999999998 99999999885443 3456678999999864
Q ss_pred HHHHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHH
Confidence 2222221111 11223345688899999999888999999999999999874
No 62
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=2.7e-23 Score=182.16 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=93.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..+.++.+||+||++. +
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLEFTVRE 133 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCccCCCCCcHHH
Confidence 3566777764 59999999999999999999999999998 9999999998543 3456778999999864 3
Q ss_pred HHHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+ +........+...++.++++.++|....++++.+||+|||||++|+
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHH
Confidence 3432 2111122233455677899999999889999999999999999874
No 63
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.4e-23 Score=177.42 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=91.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----CchHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ....++++.|+|+||++.
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE 101 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence 555666655 49999999999999999999999999998 999999998852 123456678999999863
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|. ...++++.+||+|||||++|+
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 333333211 122233446788999999996 567999999999999999874
No 64
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=2.6e-23 Score=170.23 Aligned_cols=118 Identities=19% Similarity=0.032 Sum_probs=90.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++++.++|++|++. ++
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHHHH
Confidence 455666653 59999999999999999999999999998 9999999987543 3456678999999864 23
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence 322111 1111122345678899999998888999999999999999874
No 65
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.89 E-value=3.7e-23 Score=168.69 Aligned_cols=114 Identities=24% Similarity=0.241 Sum_probs=88.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++. .+++.++|++|++.
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~ 88 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVR 88 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHH
Confidence 455566664 69999999999999999999999999998 99999998763 35568999999853
Q ss_pred HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+...... ......+++.++++.+++....++++.+||||||||++|+
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence 23333221110 1123446788899999998888999999999999999874
No 66
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=2.8e-23 Score=181.43 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=93.3
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-----
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~----- 138 (189)
..+..+++|.- +||+++|+|+||||||||+++|+|+++|+ |+|.++|.++...... .+++.|+||||++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 34566777774 59999999999999999999999999998 9999999998765443 34568999999973
Q ss_pred -----HHHHhcCCC---CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCP---HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .+...+..+++.++|+.++|. ...++++.+|||||+|||+|+
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iA 173 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIA 173 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 233222111 122233456788999999995 467999999999999999974
No 67
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.2e-23 Score=176.40 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=91.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------ 138 (189)
+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... ...++++.||||||++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED 101 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence 556666663 59999999999999999999999999998 9999999988532 22456778999999863
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++|+.++|. ...++.+.+||||||||++|+
T Consensus 102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 233332111 122233456788999999997 578899999999999999874
No 68
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.89 E-value=4.1e-23 Score=170.05 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=91.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---H-hhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~-~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ . ++.++|++|++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 456666664 69999999999999999999999999998 99999999886554432 2 357999999864
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+..+++.++|+.++|....++++.+||+|||||++|+
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 33332211 1111223456788999999998888999999999999999874
No 69
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.4e-24 Score=174.70 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=97.0
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH-------
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~------- 138 (189)
....++++|.- +||++||+|||||||||.+.+++|+++|+ |+|.+++.|++.++...+.| .|||+||++.
T Consensus 17 r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV 96 (243)
T COG1137 17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96 (243)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcH
Confidence 34556666665 49999999999999999999999999999 99999999999888776654 8999999987
Q ss_pred -HHHHhcCCCCC-C--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPHA-A--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~~-~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+..-..... . ..+...+++++|+.|.|....+.+...||||||+|++|+
T Consensus 97 ~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 97 EDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 33332221111 1 123445678999999999999999999999999999874
No 70
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=5e-23 Score=169.77 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=90.7
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|++|++. +
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 94 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEE 94 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHH
Confidence 45566665 369999999999999999999999999998 999999998765444443 357999999864 3
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... ..........++.++++.+++....++.+.+||+|||||++|+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 95 NILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 3333211 1111122345678899999998888999999999999999874
No 71
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.4e-23 Score=176.37 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=90.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++++.++|+||++.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 101 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN 101 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence 455555554 59999999999999999999999999998 9999999987532 23445668999999863
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++|+.++|. ...++++.+||||||||++|+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 233322111 112223445688999999997 578999999999999999974
No 72
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=2.8e-23 Score=178.72 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=92.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||+||++. ++
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHHHH
Confidence 455666665 58999999999999999999999999999 999999998854 34456778999999865 33
Q ss_pred HHhcC-CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~-~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.. .......+..+++.++|+.++|....++++.+||+|||||++|+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 145 (301)
T TIGR03522 96 LQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA 145 (301)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHH
Confidence 33211 11112222345688899999999889999999999999999874
No 73
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=4.2e-23 Score=177.70 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=91.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++++.++|++|++. ++
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~ 97 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVREN 97 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHHH
Confidence 456666664 59999999999999999999999999998 9999999987532 3455678999999864 33
Q ss_pred HHh-cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~-g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+ .........+...++.++++.++|....++++.+||||||||++|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHH
Confidence 322 1111122222345677899999999888999999999999999874
No 74
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=4e-23 Score=168.31 Aligned_cols=117 Identities=15% Similarity=-0.002 Sum_probs=89.6
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|++|++. ++
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHHHH
Confidence 45566665 469999999999999999999999999998 999999998754332 2357999999865 33
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.... .....+..+++.++++.+++....++++.+||+|||||++|+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence 3332111 111233345678899999998888999999999999999874
No 75
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.3e-23 Score=168.67 Aligned_cols=115 Identities=23% Similarity=0.149 Sum_probs=88.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ..++.++|++|++. ++
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHHH
Confidence 44556665 469999999999999999999999999998 999999987732 34568999999864 33
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+..+.+.++++.+++....++++.+||+|||||++|+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 332211 1111123345688899999998888999999999999999874
No 76
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=5.6e-23 Score=174.80 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+...+++.++|+||++. +
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~ 98 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ 98 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence 45566666 369999999999999999999999999998 999999998865455566778999999863 2
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+.... ........+++.++++.++|....++.+.+||+|||||++|+
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence 33222111 112222345678999999998888999999999999999874
No 77
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4e-23 Score=184.65 Aligned_cols=120 Identities=16% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH-----
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~----- 138 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|+||++.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 3566777764 59999999999999999999999999998 999999999876554432 347999999864
Q ss_pred ---HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LA 176 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLA 176 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHH
Confidence 44444321 1112233456788999999999889999999999999999874
No 78
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=6.2e-23 Score=172.75 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=92.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++. ++
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 96 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEV 96 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHH
Confidence 456666664 69999999999999999999999999998 999999988765555556678999999864 33
Q ss_pred HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... ........++.++|+.++|....++.+.+||||||||++|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la 146 (258)
T PRK13548 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA 146 (258)
T ss_pred HHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 33322111 11123345678899999998888999999999999999874
No 79
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=8.5e-23 Score=171.01 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=91.8
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH--------HHHH
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE 142 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~ 142 (189)
..+++|.- +|++++|+|+|||||||||++|+|++++.|+|.++|.++......++++.++|+||++. +++.
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~ 91 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT 91 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHH
Confidence 44556553 59999999999999999999999998656999999998866555566678999999863 3444
Q ss_pred hcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 143 ~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.........+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (248)
T PRK03695 92 LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA 138 (248)
T ss_pred hcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 43211111223356788999999998888999999999999999874
No 80
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=5.4e-23 Score=166.60 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=90.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|++|++.
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET 92 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence 455666663 69999999999999999999999999998 999999998643221 134568999999865
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHH
Confidence 233332111 111223456788899999998888999999999999999874
No 81
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.1e-23 Score=177.36 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=91.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------------------------Cch
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------------------------KED 123 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------------------------~~~ 123 (189)
.+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.+++.++.. ...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 3556666664 59999999999999999999999999998 999999876521 123
Q ss_pred HHHhhhceeccchhH---------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 124 GEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 124 ~~~~~~iG~v~Q~~~---------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++++.||||||++. +++.++... .....+..+++.++|+.++|. ...++++.+||||||||++|+
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA 177 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 456778999999863 334333211 122233456789999999996 678999999999999999974
No 82
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.8e-23 Score=167.82 Aligned_cols=117 Identities=19% Similarity=0.159 Sum_probs=89.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
..++++|.- +| +++|+|||||||||||++|+|+++|+ |+|.++|.++.... .++++.++|++|++. ++
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHHH
Confidence 445555553 37 99999999999999999999999998 99999999886443 556778999999864 22
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+..+++.++++.++|....++.+.+||+|||||++|+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH
Confidence 222110 0111122345678899999998888999999999999999874
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=6.6e-23 Score=170.21 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=91.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH--------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL 95 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHH
Confidence 45566666 369999999999999999999999999998 99999999875422 2345678999999864
Q ss_pred HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++++.++|....++.+.+||+|||||++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 96 ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 33333211 1112233445678999999998888999999999999999874
No 84
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.4e-23 Score=169.22 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=88.8
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
....+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. +++.++|++|++. +
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHH
Confidence 345566666 469999999999999999999999999998 999999988742 3467999999864 3
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... .........+++.++++.++|....++++.+||||||||++|+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHH
Confidence 3332211 1111123346788899999998888999999999999999874
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.6e-23 Score=170.68 Aligned_cols=117 Identities=17% Similarity=0.088 Sum_probs=89.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|++|++. ++
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHHHH
Confidence 455566663 69999999999999999999999999998 999999988754332 2457999999864 33
Q ss_pred HHhcCCCC-C----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-~----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... . ...+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 33321111 0 1122345678899999998888999999999999999974
No 86
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=7.6e-23 Score=168.36 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=89.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc-----cCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll-----~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|++ +|+ |+|.++|.++...+ ...+++.++|+||++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 94 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP 94 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence 455666663 69999999999999999999999999 888 99999999875544 3455678999999964
Q ss_pred ----HHHHhcCCCC-CCh-HHHHHHHHHHHhhcCCchhhccc--cccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-AAI-REDISINLGPLEELSNLFKADLL--LCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~~~-~~d~~~v~~~L~~lgL~~~~~~~--~~eLSGGqrq~~~~i 189 (189)
+++.+..... ... .+...++.++++.++|....++. +.+||||||||++|+
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 2332221111 111 12345678899999998766666 599999999999874
No 87
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.3e-23 Score=173.81 Aligned_cols=119 Identities=15% Similarity=0.058 Sum_probs=90.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+ ++.++|++|++.
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 118 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT 118 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCc
Confidence 455666664 59999999999999999999999999998 999999998765443322 357999999864
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... ........+++.++|+.++|....++++.+||+|||||++|+
T Consensus 119 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 119 VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHH
Confidence 333332111 111122345678899999998888999999999999999874
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.9e-23 Score=174.47 Aligned_cols=119 Identities=16% Similarity=0.039 Sum_probs=92.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ....++++.++|+||++.
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 100 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV 100 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccH
Confidence 555666663 59999999999999999999999999998 999999998742 223456778999999873
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus 101 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence 233322111 112233446788999999999889999999999999999874
No 89
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.1e-22 Score=165.59 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=88.8
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~ 143 (189)
+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|++|++. +++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 55555 369999999999999999999999999998 999999998854332 2467999999864 34433
Q ss_pred cCCCCCC-hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~~~~~-~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+...... ......++.++++.++|....++++.+||+|||||++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia 140 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence 3221111 123455788999999998888999999999999999874
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=6.3e-23 Score=167.97 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=88.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|+||++. +
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE 94 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence 455666664 59999999999999999999999999998 999999998865554443 457999999864 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhc-CCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+...... ..+...++.++++.+ ++....++++.+||+|||||++|+
T Consensus 95 ~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 95 NLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred HHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHH
Confidence 3333211111 112344566778887 577778999999999999999874
No 91
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.88 E-value=4.2e-23 Score=167.82 Aligned_cols=114 Identities=17% Similarity=0.040 Sum_probs=89.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++... .++++.++|+||++. ++
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHHHH
Confidence 55566666 469999999999999999999999999998 9999999887543 345678999999864 23
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . .+..++.++|+.++|....++++.+||+|||||++|+
T Consensus 93 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 93 LRLLARLL-G--IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred HHHHHHhc-C--CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence 32221110 0 1345678899999998888999999999999999874
No 92
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.5e-23 Score=172.11 Aligned_cols=119 Identities=20% Similarity=0.175 Sum_probs=93.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. ++
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 101 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQEL 101 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHH
Confidence 455666664 59999999999999999999999999998 999999998866555666678999999864 34
Q ss_pred HHhcCCCC---C--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH---A--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~---~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... . .......++.++++.++|....++.+.+||+|||||++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 102 VARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 43332111 0 0122345678899999998888999999999999999874
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=6.2e-23 Score=181.28 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=93.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-C--ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
+.++++|.- +|++++|+|||||||||||++|+|+++| . |+|.++|.++..... .++.|+||||++.
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcHH
Confidence 556666664 5999999999999999999999999988 4 999999998864433 3468999999975
Q ss_pred HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.++... .....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 98 enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 98 DNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHH
Confidence 455544321 122233456788999999999899999999999999999974
No 94
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=6.2e-23 Score=173.73 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=90.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|+||++.
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 101 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV 101 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence 455666664 59999999999999999999999999998 9999999887544332 24567999999864
Q ss_pred -HHHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ........++.++|+.++|....++.+.+||||||||++|+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 3333321111 11222345677899999998888999999999999999874
No 95
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1e-22 Score=173.13 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=93.9
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------- 138 (189)
....+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 356667666 469999999999999999999999999998 999999998865555566788999999873
Q ss_pred HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++++.++|....++++.+||+|||||++|+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 233322111 111222345678899999998888999999999999999874
No 96
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.3e-23 Score=174.53 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=91.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----CchHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~------ 138 (189)
+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ....++++.++||||++.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 100 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence 455666654 59999999999999999999999999998 999999998742 223456778999999862
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++|+.++|. ...++.+.+||||||||++|+
T Consensus 101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 333333211 112233456788999999996 467899999999999999974
No 97
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=173.22 Aligned_cols=120 Identities=14% Similarity=0.019 Sum_probs=92.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchhH--------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~-------- 138 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ..++++.++|+||++.
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 3566677764 59999999999999999999999999998 99999999885432 3456778999999873
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 122222111 111223345688899999999889999999999999999874
No 98
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9e-23 Score=172.26 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=92.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++. ++
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL 105 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHH
Confidence 45566666 469999999999999999999999999998 999999998865555566778999999853 34
Q ss_pred HHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+...... .......++.++|+.++|....++++.+||||||||++|+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 106 VAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 443321110 0122345688899999998888999999999999999874
No 99
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1e-22 Score=173.02 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=90.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.|+|++|++.
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence 455666664 59999999999999999999999999998 999999998742 122345678999999863
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++++.++|....++++.+||+|||||++|+
T Consensus 97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHH
Confidence 233222111 111223345688899999998888999999999999999874
No 100
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=168.50 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=91.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|++|++. +
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD 97 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence 455666664 69999999999999999999999999998 99999999886544433 3568999999864 3
Q ss_pred HHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+..... ....+...++.++++.+++....++++.+||+|||||++|+
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence 333321111 11223445788899999998888999999999999999874
No 101
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-22 Score=171.15 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=89.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~-------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|++|++.
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 95 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDI 95 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccH
Confidence 455666664 59999999999999999999999999998 999999998742 223345678999999863
Q ss_pred -HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+...++.++++.++|....++++.+||||||||++|+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 96 DSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 12222111 1111122345677899999998888999999999999999874
No 102
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.6e-23 Score=173.28 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=101.0
Q ss_pred CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHh-hhceeccchhH------
Q 029723 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------ 138 (189)
Q Consensus 68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~------ 138 (189)
...+.|+++|+-+ |++++||||||||||||+++|+|+++|+ |+|.+.|.+|+..++.++. ..|+..||.+.
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lT 95 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLT 95 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCc
Confidence 3457788888876 8999999999999999999999999999 9999999999988877764 47888899864
Q ss_pred --HHHHhcCCCCC-------------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPHA-------------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~~-------------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+..+..... ..++..+++.++|+.++|.+.++.+..+||+|||++++|+
T Consensus 96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 56665532110 1234567889999999999999999999999999999874
No 103
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1e-22 Score=177.51 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=92.8
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------ 138 (189)
.+..+++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...... .+++.|+||||++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 4566777764 59999999999999999999999999998 9999999998765443 34568999999973
Q ss_pred ----HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++...... .+...+..+++.++|+.++|. ...++++.+||||||||++|+
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA 166 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH
Confidence 122211111 122234456789999999996 467999999999999999874
No 104
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=171.08 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=92.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.++|++|++. +
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~ 103 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY 103 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence 445556653 69999999999999999999999999998 999999998865555567778999999873 2
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+.... ........+++.++++.+++....++++.+||+|||||++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence 22222111 111223345678899999998888999999999999999874
No 105
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=172.26 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=92.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------- 138 (189)
+..+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence 55566665 369999999999999999999999999885 799999998865555566778999999873
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++++.++|....++++.+||+||+||++|+
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence 23332211 1112223345688899999999889999999999999999874
No 106
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=170.51 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=92.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|+||++. ++
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 96 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVREL 96 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHH
Confidence 45566666 469999999999999999999999999998 999999988755555566678999999864 34
Q ss_pred HHhcCCCC---CC--hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH---AA--IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~---~~--~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... .. ......++.++++.++|....++++.+|||||+||++|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 97 VAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA 150 (255)
T ss_pred HHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence 44432111 11 122345678899999998888999999999999999874
No 107
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=1.1e-22 Score=168.54 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=89.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... ..++.++|++|++. ++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~ 94 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQN 94 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHHH
Confidence 445555553 69999999999999999999999999998 999999988754433 33458999999864 33
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.... .....+....+.++++.++|....++.+.+||||||||++|+
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 95 LRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 3322111 111222345678899999998888999999999999999874
No 108
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.88 E-value=1.4e-22 Score=167.16 Aligned_cols=118 Identities=20% Similarity=0.146 Sum_probs=90.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|+||++. +++
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl 101 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL 101 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHH
Confidence 455566654 59999999999999999999999999998 999999998866556566778999999864 333
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+..... .......++.++|+.+++. ...++++.+||+||+||++|+
T Consensus 102 ~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 102 IFPWQIR-NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred HhHHhhc-CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 3221110 0112345677899999996 467999999999999999874
No 109
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=168.23 Aligned_cols=116 Identities=18% Similarity=0.083 Sum_probs=90.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++. +++
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI 97 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence 445566654 59999999999999999999999999998 999999998865555566778999999965 222
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+..... .....++.++++.++|. ...++.+.+||+|||||++|+
T Consensus 98 ~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 98 EYGPMLK---GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred hcchhhc---CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 2211110 11235678899999996 567899999999999999874
No 110
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-22 Score=175.37 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=91.8
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----------------chHHHhhhce
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------------EDGEFLMRNG 131 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----------------~~~~~~~~iG 131 (189)
.+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... ....+++.++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig 119 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVS 119 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEE
Confidence 3556666663 59999999999999999999999999998 9999999877432 2345677899
Q ss_pred eccchhH---------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 132 ~v~Q~~~---------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
||||++. +++.++... .....+...++.++++.++|. ...++.+.+||||||||++|+
T Consensus 120 ~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiA 188 (320)
T PRK13631 120 MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIA 188 (320)
T ss_pred EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHH
Confidence 9999873 333333211 112233446788899999996 578999999999999999974
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=1.9e-22 Score=165.62 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=87.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------ 138 (189)
...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|++|++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 3456666664 59999999999999999999999999998 999999998865442 345678999999972
Q ss_pred ----HHHHhcCCCC-CChH-HHHHH-HHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-AAIR-EDISI-NLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~~~~-~d~~~-v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... .... ..... +.++++.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 2222211111 1111 11122 35788999995 578999999999999999874
No 112
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.1e-22 Score=168.10 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=90.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCchHHHhhhceeccchhH-----
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++.......+++.|+|+||++.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence 45666666 46999999999999999999999999873 5 999999998865555566778999999864
Q ss_pred ---HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. ...+..+++.++|+.++|.. ..++.+.+||||||||++|+
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 344333211 11 11233456788999999853 56889999999999999874
No 113
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.87 E-value=1.3e-22 Score=180.31 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=92.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec----CCCCCchHHH---h-hhceeccchhH-
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALPEERI- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~----di~~~~~~~~---~-~~iG~v~Q~~~- 138 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|. ++...+..++ + +.++|+||++.
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 3456666665 49999999999999999999999999998 99999986 4544443332 2 47999999875
Q ss_pred -------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LA 176 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLA 176 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 45544421 1122233456788999999999889999999999999999874
No 114
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.9e-22 Score=164.83 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=86.2
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~ 139 (189)
+++|. .+ ++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++. +
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 44444 35 999999999999999999999999998 99999998874221 2234568999999864 2
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+..... .......++.++++.+++....++++.+||||||||++|+
T Consensus 95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHH
Confidence 333221111 1123455788899999998888999999999999999874
No 115
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.87 E-value=1.6e-22 Score=165.97 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------ 138 (189)
....+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...... .+++.++|+||++.
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 355666676 459999999999999999999999999998 9999999988544332 35678999999975
Q ss_pred --HHHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+...++.++++.++|....++++.+||+|||||++|+
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~la 153 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIA 153 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 2333221111 12223345788999999998888999999999999999874
No 116
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.87 E-value=1.9e-22 Score=164.81 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=88.1
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~ 143 (189)
+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... .+++.++|++|++. +++.+
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHHh
Confidence 445544 59999999999999999999999999998 99999999875432 34568999999864 33333
Q ss_pred cCCCCC-ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 144 GGCPHA-AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~~~~-~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...... .......++.++++.++|....++.+.+||+|||||++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALA 140 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHH
Confidence 211111 1122345678899999998888999999999999999874
No 117
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=1.6e-22 Score=177.78 Aligned_cols=115 Identities=19% Similarity=0.086 Sum_probs=89.1
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~ 139 (189)
+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ....++.++|+||++. +
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 455553 69999999999999999999999999998 99999998875321 1234568999999864 4
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... ....+...++.++|+.++|....++++.+||||||||++|+
T Consensus 95 nl~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalA 143 (354)
T TIGR02142 95 NLRYGMKR-ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIG 143 (354)
T ss_pred HHHHHhhc-cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 44443221 11122345688999999999889999999999999999874
No 118
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.87 E-value=2.1e-22 Score=168.93 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=92.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++. ++
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDV 95 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHH
Confidence 45555665 369999999999999999999999999998 999999998866555566678999999863 34
Q ss_pred HHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... ....+..+++.++++.+++....++.+.+||+|||||++|+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred HHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 43332110 01123445788899999998888999999999999999874
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=2.4e-22 Score=167.55 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=90.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--------hHHHhhhceeccchhH--
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEFLMRNGALPEERI-- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--------~~~~~~~iG~v~Q~~~-- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ...+++.++|++|++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF 97 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccC
Confidence 456666664 69999999999999999999999999998 99999998874321 2345668999999864
Q ss_pred ------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. .........+++.++++.++|....++++.+||+|||||++|+
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 98 PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 33332211 1111123345678899999998778999999999999999874
No 120
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=2.8e-22 Score=166.42 Aligned_cols=119 Identities=18% Similarity=0.029 Sum_probs=91.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++ ++.++|++|++. +
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 96 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE 96 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH
Confidence 455566654 59999999999999999999999999998 999999998865544433 347999999864 3
Q ss_pred HHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+..... ........++.++++.+++....++.+.+||+||+||++|+
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 97 NLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred HHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 444322110 01123456788999999998888999999999999999874
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.3e-22 Score=170.83 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=89.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++++.|+|++|++.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 101 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE 101 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence 455666664 69999999999999999999999999998 9999999887542 23455678999999862
Q ss_pred ---HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .....+...++.++|+.++|. ...++++.+||||||||++|+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 222222111 111222345677889999997 467999999999999999874
No 122
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.4e-22 Score=162.12 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH--
Q 029723 67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-- 138 (189)
Q Consensus 67 ~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~-- 138 (189)
..+.....+++.- +||.++||||+||||||||-+++|+..|+ |+|.+.|+++.+++...+ .+.+|||||...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 3344555555554 59999999999999999999999999999 999999999987765443 358999999864
Q ss_pred ------HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+.... .-..+.....+.++|+.+||...+.-+|.+|||||||||+|+
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 343332111 001123456688999999999999999999999999999974
No 123
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.7e-22 Score=165.12 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=88.3
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHh
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET 143 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~ 143 (189)
+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|+||++. +++.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence 455553 59999999999999999999999999998 999999998754332 2457999999864 34433
Q ss_pred cCCCCCC-hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~~~~~-~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
....... ......++.++++.++|....++++.+||+|||||++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 141 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA 141 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHH
Confidence 3211111 123456788999999998889999999999999999874
No 124
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.5e-22 Score=176.58 Aligned_cols=111 Identities=18% Similarity=0.086 Sum_probs=88.0
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc----hHHHhhhceeccchhH--------H
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~----~~~~~~~iG~v~Q~~~--------~ 139 (189)
+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ....++.++|+||++. +
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 455553 69999999999999999999999999998 99999998875321 2234568999999864 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.. ....+++.++|+.++|....++++.+||||||||++|+
T Consensus 96 nl~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala 140 (352)
T PRK11144 96 NLRYGMA-----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG 140 (352)
T ss_pred HHHhhhh-----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence 3333211 12345788999999999889999999999999999974
No 125
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.87 E-value=4.1e-22 Score=168.54 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------- 138 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 3555666655 58999999999999999999999999998 999999988854333344567999999863
Q ss_pred -HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... ........+++.++|+.++|. ...++++.+||+|||||++|+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 122211111 111122345678899999994 567889999999999999874
No 126
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2e-22 Score=165.71 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCCCCCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCC--chHHHhhhceecc
Q 029723 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALP 134 (189)
Q Consensus 64 ~~~~~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~--~~~~~~~~iG~v~ 134 (189)
||....+.. ++++. +++.+++||||+|||||||||++.++... +|+|.++|++|... +..++|++||+||
T Consensus 16 yYg~~~aL~-~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 16 YYGDKHALK-DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred EECchhhhc-cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence 444333333 33333 35899999999999999999999998642 39999999999753 5778999999999
Q ss_pred chhH-------HHHHhcCCCCCCh-HHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 135 EERI-------RAVETGGCPHAAI-REDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 135 Q~~~-------~~i~~g~~~~~~~-~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
|.|+ +|+.+|...+-.. ++..+.++..|+...|++ .+++....||||||||+.|+
T Consensus 95 QkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 95 QKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred cCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 9987 6777775443221 344567888888888764 56677889999999999864
No 127
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.87 E-value=3.5e-22 Score=168.65 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=90.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------- 138 (189)
+.++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......+ +++.++|++|++.
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 105 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM 105 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence 556666664 59999999999999999999999999998 99999999886544332 4568999999862
Q ss_pred ---HHHHhcCC--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ..+.......++.++++.++|. ...++++.+||||||||++|+
T Consensus 106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la 162 (265)
T TIGR02769 106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA 162 (265)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 12221110 1111223456788899999996 577999999999999999874
No 128
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=2.1e-22 Score=163.67 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=89.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ..+++.++|++|++. ++
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~ 94 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTALEN 94 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcHHHH
Confidence 445566655 59999999999999999999999999998 99999998875432 345678999998753 33
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . ..+..++.++|+.++|....++++.+||+|||||++|+
T Consensus 95 l~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 95 LRFYQRLH-G-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred HHHHHHhc-C-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 33221110 0 02446788899999998888999999999999999874
No 129
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.7e-22 Score=165.89 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=89.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------CchHHHhhhceeccchhH----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------~~~~~~~~~iG~v~Q~~~---- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. .....+++.++|++|++.
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPH 96 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCC
Confidence 455666664 69999999999999999999999999998 999999988631 112345668999999864
Q ss_pred ----HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++..... ......+...++.++++.++|....++.+.+||||||||++|+
T Consensus 97 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 97 LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 23321110 0111122345678899999998888999999999999999874
No 130
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.7e-22 Score=174.76 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=90.6
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHh----hhceeccchhHH
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR 139 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~~ 139 (189)
.+..+++|.-+ |++++|+|+||||||||+++|+|+++| + |+|.++|.++......+++ +.|+||||++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 35666777665 899999999999999999999999973 6 9999999998766554433 369999999731
Q ss_pred ----------HHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 140 ----------AVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ----------~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
++...... .....+..+++.++|+.++|.+ ..++++.+|||||||||+|+
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA 165 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA 165 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 11111101 1122345567889999999963 56889999999999999874
No 131
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=4e-22 Score=161.86 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=89.0
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... ...+++.++|++|++. ++
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~ 93 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLEN 93 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHHH
Confidence 44566665 469999999999999999999999999998 9999999887533 3456678999999764 23
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... . ...+++.++++.+++....++++.+||+|||||++|+
T Consensus 94 l~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 94 LRFWHA--D---HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALA 137 (201)
T ss_pred HHhhcc--c---ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHH
Confidence 322211 0 1345678899999998888999999999999999874
No 132
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-22 Score=166.86 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=90.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ +..++|+||++. +
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 99 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE 99 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH
Confidence 445556653 69999999999999999999999999998 999999998865544443 346899999864 3
Q ss_pred HHHhcCCCC--------------C--ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH--------------A--AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~--------------~--~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... . ...+...++.++++.++|....++++.+||+|||||++|+
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 100 NLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred HHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 444321100 0 0012335678889999998889999999999999999874
No 133
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.1e-22 Score=166.13 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=99.2
Q ss_pred CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723 65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
|.....+..+++|..+ |+++||+|+|||||||+||+|++++.|+ |.|++++.|... .+...+++||+++.+..
T Consensus 11 y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~R 89 (245)
T COG4555 11 YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYAR 89 (245)
T ss_pred ccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhhh
Confidence 3333435567777765 9999999999999999999999999999 999999999854 55677889999986543
Q ss_pred ----HHHH-hcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVE-TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~-~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++. ++....+...+.+.++.++.+.|+|.+.+++++.+||-||||+|+|+
T Consensus 90 lT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 90 LTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 3332 33333344445677899999999999999999999999999999874
No 134
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=4.6e-22 Score=161.27 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=88.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ....+++.++|++|++. ++
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHHH
Confidence 455666664 69999999999999999999999999998 999999988753 33456678999998754 33
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... .....+.++++.+++....++++.+||+||+||++|+
T Consensus 95 ~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la 139 (200)
T PRK13540 95 CLYDIHFS----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL 139 (200)
T ss_pred HHHHHhcC----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHH
Confidence 33321110 1234678899999998778899999999999999874
No 135
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.86 E-value=3.6e-22 Score=182.87 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=91.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.|+... ..++++.|+||+|++. +|
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHH
Confidence 4567777765 59999999999999999999999999998 9999999999888 8889999999999986 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------ccc----cccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-------DLL----LCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~----~~eLSGGqrq~~~~i 189 (189)
+.++.. .. +.+++.++++..++.+.. +.. -..||||||||++|+
T Consensus 428 I~~g~~-~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 428 LRLGRP-DA----TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HhccCC-CC----CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 666532 22 345566777777765432 222 346999999999974
No 136
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=4.2e-22 Score=181.81 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=91.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+... +++.++|+||++. +
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 98 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAE 98 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHH
Confidence 455666654 59999999999999999999999999998 99999999885443333 3457999999864 3
Q ss_pred HHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 99 NIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 444432111 11233345688899999998888999999999999999874
No 137
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=5.3e-22 Score=165.58 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=89.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++| +|+|.++|.++... ....+++.++|+||++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence 44556666 46999999999999999999999999986 59999999987542 23345678999999864
Q ss_pred ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+...++.++++.++|. ...++++.+||||||||++|+
T Consensus 96 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 3333321111 11223345678899999997 678899999999999999874
No 138
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.3e-22 Score=168.22 Aligned_cols=117 Identities=25% Similarity=0.185 Sum_probs=98.7
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+.++++|.-+ |+++||+|+|||||||++|+|+|++.|+ |.|.|+|.++.. +...+|||+|.++.
T Consensus 15 k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k~tv~ 90 (300)
T COG4152 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVE 90 (300)
T ss_pred eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCccCcHH
Confidence 336677777765 9999999999999999999999999998 999999998843 45568999999975
Q ss_pred -HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...+++....+..++...++..+|+++++.....+++.+||-|+||++.||
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi 142 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI 142 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH
Confidence 334455555566667788899999999999999999999999999999885
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.9e-22 Score=169.80 Aligned_cols=119 Identities=11% Similarity=0.033 Sum_probs=88.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----C-chHHHhhhceeccchhH-----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K-EDGEFLMRNGALPEERI----- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----~-~~~~~~~~iG~v~Q~~~----- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. . ...++++.|+|++|++.
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 105 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ 105 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence 555666664 59999999999999999999999999998 999999988742 1 23455678999999862
Q ss_pred ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+...++.++++.++|. ...++++.+||+|||||++|+
T Consensus 106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 223222111 111222345677899999995 578999999999999999874
No 140
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.4e-22 Score=167.04 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=87.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++|++|++. ++
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCccCCCCcHHHH
Confidence 455566654 59999999999999999999999999998 9999999887432 235899999854 33
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... ......+...++.++|+.++|....++++.+||||||||++|+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 332211 1112223345788999999998888999999999999999874
No 141
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.86 E-value=3.5e-22 Score=161.57 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=87.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... .++++.++|++|++. ++
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALEN 93 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHHH
Confidence 445555554 59999999999999999999999999998 99999998875443 345678999998753 22
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . ....++.++++.+++....++++.+||+|||||++|+
T Consensus 94 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 94 LHFWAAIH-G--GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALA 139 (198)
T ss_pred HHHHHHHc-C--CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHH
Confidence 22211000 0 1134578899999998888999999999999999874
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=5.7e-22 Score=165.84 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=89.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-------------hHHHhhhceeccc
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-------------~~~~~~~iG~v~Q 135 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+ ...+++.++|++|
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 94 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQ 94 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEec
Confidence 445556554 59999999999999999999999999998 99999998875321 1245678999999
Q ss_pred hhH--------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 136 ERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 136 ~~~--------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++. +++.++.. ...........+.++|+.+++....++.+.+||+||+||++|+
T Consensus 95 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 864 33333210 1111122345678899999998888999999999999999874
No 143
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=7.9e-22 Score=163.34 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCC---C
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC---P 147 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~---~ 147 (189)
+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... ..+|++|++. +++.+... .
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 69999999999999999999999999998 999999988754322 2479998864 34433211 1
Q ss_pred CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.....+...++.++++.++|....++++.+||||||||++|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 126 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIA 126 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHH
Confidence 112223345678899999998888999999999999999874
No 144
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.86 E-value=1.3e-22 Score=154.03 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChH--HHHH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR--EDIS 156 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~--~d~~ 156 (189)
+|++++|+|+|||||||||++|+|+++|+ |.|.+++.++.......+++.++|++|++..... ..+. ....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~tv~~~~~~~ 83 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPG------LTVRENESDE 83 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTT------SBHHHHHHHH
T ss_pred CCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence 69999999999999999999999999998 9999999999776666778899999999542211 1111 2455
Q ss_pred HHHHHHhhcCCchhhcccc----ccCChHHHHhhhcC
Q 029723 157 INLGPLEELSNLFKADLLL----CESGGGNLQTISFI 189 (189)
Q Consensus 157 ~v~~~L~~lgL~~~~~~~~----~eLSGGqrq~~~~i 189 (189)
++.++++.+++....+..+ .+||+|||||++|+
T Consensus 84 ~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la 120 (137)
T PF00005_consen 84 RIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALA 120 (137)
T ss_dssp HHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 7888999998876666666 99999999999874
No 145
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.86 E-value=6.7e-22 Score=161.87 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=86.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++. ++
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 97 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence 3555666654 69999999999999999999999999998 999999988765455556678999999875 22
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccc-----------ccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLL-----------CESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~-----------~eLSGGqrq~~~~i 189 (189)
+.+... . .....+.++++.+++....++++ .+||||||||++|+
T Consensus 98 l~~~~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 98 ITLGAP-L----ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred hhcCCC-C----CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 222211 1 12345667888888876666544 69999999999874
No 146
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.1e-22 Score=164.12 Aligned_cols=118 Identities=19% Similarity=0.120 Sum_probs=88.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ +++.++|++|++. +
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 99 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE 99 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH
Confidence 45566666 469999999999999999999999999998 99999999886655443 4568999999864 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhc-CCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... ........++.++++.+ ++....+..+.+||+|||||++|+
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 100 NLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred HHHHhhhc-cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHH
Confidence 33332211 11122234566777777 477677889999999999999874
No 147
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=8.3e-22 Score=163.15 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=84.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++. +++
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 96 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHh
Confidence 455666663 69999999999999999999999999998 999999998865555566778999999864 233
Q ss_pred HhcCCCCCChHHHH-----HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDI-----SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~-----~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+... ........ ..+.++++.+ ++....++++.+||||||||++|+
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~la 150 (237)
T cd03252 97 ALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150 (237)
T ss_pred hccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHH
Confidence 33211 11111100 1123344554 455556788999999999999874
No 148
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.8e-22 Score=180.30 Aligned_cols=119 Identities=14% Similarity=0.034 Sum_probs=92.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+. ++.++||||++. +
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE 99 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence 455666664 58999999999999999999999999998 999999998865544433 357999999864 3
Q ss_pred HHHhcCCCC--------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH--------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~--------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 444332110 01123456788999999998888999999999999999874
No 149
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=6e-22 Score=162.94 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=87.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++. +++
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl 108 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI 108 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHh
Confidence 45566665 359999999999999999999999999998 999999988765444556678999999875 222
Q ss_pred HhcCCCCCChHH-----HHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIRE-----DISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~-----d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++... ....+ ....+.++++.+ ++....+.++.+||||||||++|+
T Consensus 109 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 109 AYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred ccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 222111 11111 112245678888 777778889999999999999874
No 150
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=7.6e-22 Score=166.68 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=86.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++. .+++.++|++|++. ++
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~l~~~~tv~en 101 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMFQDARLLPWKKVIDN 101 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEecCccCCCCCcHHHH
Confidence 455666664 59999999999999999999999999998 99999876542 34568999999864 23
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.. .....++.++|+.++|....++.+.+||||||||++|+
T Consensus 102 l~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 102 VGLGLK-----GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALA 145 (257)
T ss_pred HHhccc-----chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 332211 11235678899999998888999999999999999874
No 151
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-22 Score=180.13 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=92.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHH-HhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~------ 138 (189)
...++++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++...+..+ +++.++||||++.
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 98 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELS 98 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCc
Confidence 3556666664 5899999999999999999999999986 6 99999999886544433 3467999999864
Q ss_pred --HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 4444432211 12223446788999999998788999999999999999974
No 152
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=166.81 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=92.3
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC---------CccEEEeecCCCCCchHHHhhhceeccchhH--
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p---------~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++| +|+|.++|.++......++++.++|+||++.
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~ 95 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence 45566665 46999999999999999999999999987 5999999998865555566677999999853
Q ss_pred ------HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+...... ...+...++.++|+.++|....++++.+||||||||++|+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 34433322111 0123445678899999998888999999999999999974
No 153
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.6e-22 Score=164.41 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=88.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCC--CCchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++. .....++++.++|++|++.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP 98 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence 556666664 6999999999999999999999999986 4 99999999885 2234456678999999864
Q ss_pred -----HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. .......++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 333332111 11 1122345677889998874 356889999999999999874
No 154
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.86 E-value=1.4e-21 Score=160.51 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=86.0
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee--c--CCCCCchHH---H-hhhceeccchhH--
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT--N--DIFTKEDGE---F-LMRNGALPEERI-- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g--~--di~~~~~~~---~-~~~iG~v~Q~~~-- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++ . ++...+... + ++.++|++|++.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI 102 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence 45566666 469999999999999999999999999998 9999984 2 443333332 2 357999999875
Q ss_pred ------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGC-PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... .........+++.++++.++|.. ..++++.+||+|||||++|+
T Consensus 103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 23322111 11111233457788999999975 35789999999999999874
No 155
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=7.5e-22 Score=162.75 Aligned_cols=117 Identities=20% Similarity=0.105 Sum_probs=86.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......+ +++.++|++|++. +
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 94 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE 94 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH
Confidence 455666653 59999999999999999999999999998 99999998886554443 3467999999865 2
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++..... ......+.++++.++ +....++++.+||||||||++|+
T Consensus 95 ~l~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (230)
T TIGR03410 95 NLLTGLAALP--RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIA 143 (230)
T ss_pred HHHHHHHhcC--cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHH
Confidence 2322211110 011234566777776 56678999999999999999874
No 156
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.85 E-value=9.5e-22 Score=171.69 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=90.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHh----hhceeccchhH--
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL----MRNGALPEERI-- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~-- 138 (189)
.+..+++|.- +||+++|+|+||||||||+++|+|+++| .|+|.++|.++......+++ +.|+||||++.
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 4566777764 5999999999999999999999999988 49999999999766655432 47999999973
Q ss_pred --------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 139 --------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.... .......+...++.++|+.++|.. ..++++.+|||||+|||+|+
T Consensus 110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IA 173 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIA 173 (330)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHH
Confidence 1221111 011222334567888999999964 35789999999999999874
No 157
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-21 Score=165.37 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=87.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++ |+ |+|.++|.++.. .+..++++.++|+||++.
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 456667764 699999999999999999999999987 57 999999988742 234456678999999864
Q ss_pred ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+............+++.++++.+++. ...++++.+||+|||||++|+
T Consensus 108 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 108 KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 333332211100112234567788888763 357889999999999999874
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.1e-21 Score=162.94 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=89.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... .++.++|++|++. ++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence 35566666 469999999999999999999999999998 999999998864333 2468999999864 23
Q ss_pred HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... ....+..+.+.++++.++|....++++.+||+||+||++|+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 141 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence 33221111 11122345677899999998889999999999999999874
No 159
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-21 Score=163.19 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=88.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.......+++.++|+||++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~ 96 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY 96 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence 44555555 3699999999999999999999999974 56 999999999865555566778999999964
Q ss_pred HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. .......++.++++.++|. ...++.+.+||+|||||++|+
T Consensus 97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 333332111 00 1123445678899999994 346788999999999999874
No 160
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.4e-21 Score=160.81 Aligned_cols=114 Identities=19% Similarity=0.136 Sum_probs=81.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|++|++. +++
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~ 97 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENI 97 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHH
Confidence 455666655 58999999999999999999999999998 999999988765555566778999999865 222
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+.... . ....+.++++.+ ++....++.+.+||+|||||++|+
T Consensus 98 ~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 98 RLGRPN-A----TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hccCCC-C----CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence 222111 1 112233333333 344445667899999999999874
No 161
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.9e-22 Score=170.38 Aligned_cols=117 Identities=17% Similarity=0.067 Sum_probs=90.5
Q ss_pred cccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhHHHHHhcC
Q 029723 72 ILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVETGG 145 (189)
Q Consensus 72 ~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~~~i~~g~ 145 (189)
..+++|..+| .+++|.|++|||||||+|+|+|+++|+ |.|.++|.-+..... ..-+|+||||||+...+..+..
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 3667788887 899999999999999999999999999 999999976643221 1235789999999653322222
Q ss_pred CCCCC---hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 146 CPHAA---IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 146 ~~~~~---~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
..++. +.......+++++.||+...++++|..|||||||||||
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAI 139 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAI 139 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHH
Confidence 11111 12234567788999999999999999999999999997
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=163.66 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=87.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
..++++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|++|++.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 455666664 5999999999999999999999999986 4 9999999887432 23345678999999864
Q ss_pred ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCC----chhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH--AAIREDISINLGPLEELSN----LFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL----~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ........++.++++.+++ ....++.+.+||||||||++|+
T Consensus 102 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 102 MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 3443332111 1112234567788888887 3457889999999999999874
No 163
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.85 E-value=1.3e-21 Score=161.75 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=84.4
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHhhhceeccchhHH--------
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------- 139 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~-------- 139 (189)
+++|. ++|++++|+|||||||||||++|+|+++| + |+|.++|.++... ..+++.++|++|++..
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccCH
Confidence 34444 36999999999999999999999999998 7 9999999987432 2223579999999731
Q ss_pred --HHHhcCC-CCCChHHHHHHHHHHHhhcCCc---hhhccccccCChHHHHhhhcC
Q 029723 140 --AVETGGC-PHAAIREDISINLGPLEELSNL---FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 --~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~---~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... .........+++.++|+.++|. ...++.+.+||+|||||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~la 137 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIA 137 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHH
Confidence 1111110 0111123345688999999997 467899999999999999974
No 164
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=1.4e-21 Score=161.95 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=85.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|++ +|+ |+|.++|.++.......+ +..++|++|++.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 94 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN 94 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence 445555554 59999999999999999999999995 677 999999998865554443 335899999864
Q ss_pred -HHHHhcCC--CC------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723 139 -RAVETGGC--PH------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~--~~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i 189 (189)
+++.+... .. ....+..+++.++++.++|. ...++.+. +||+|||||++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 22222110 00 11122245678899999997 45678887 5999999999874
No 165
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=170.91 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc----CC-ccEEEeecCCCCCchHHH----hhhceeccchhH-
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~----p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~- 138 (189)
.+..+++|.- +|++++|+|+||||||||+++|+|+++ |+ |+|.++|.++......++ ++.|+||||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 3566677664 599999999999999999999999986 46 999999999876555443 247999999874
Q ss_pred ---------HHHHhc--CC-CC----CChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 139 ---------RAVETG--GC-PH----AAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---------~~i~~g--~~-~~----~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
+++... .. .. ....+...++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 101 ~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iA 170 (330)
T PRK15093 101 CLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIA 170 (330)
T ss_pred hcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 112111 00 00 011223467889999999974 46899999999999999974
No 166
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.1e-21 Score=160.14 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=83.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------HHHHhcCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------RAVETGGCP 147 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------~~i~~g~~~ 147 (189)
.+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++. +.++.++|++|++. +++.++...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 479999999999999999999999999998 99999998762 23567999999863 223232111
Q ss_pred C-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 148 H-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 148 ~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. .....+..++.++++.+++....++++.+||+|||||++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 125 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVA 125 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHH
Confidence 1 01123345688899999998888999999999999999874
No 167
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.1e-21 Score=160.01 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=86.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. . .+++.++|++|++. ++
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecCCCcCCCCCcHHHH
Confidence 45566766 469999999999999999999999999998 999999987632 1 25678999987643 23
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . ....++.++++.++|....++++.+||+|||||++|+
T Consensus 94 l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 139 (207)
T PRK13539 94 LEFWAAFL-G--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALA 139 (207)
T ss_pred HHHHHHhc-C--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHH
Confidence 32211100 0 1234578899999998778899999999999999874
No 168
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=1.3e-21 Score=162.70 Aligned_cols=118 Identities=17% Similarity=0.062 Sum_probs=87.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc-hhH--------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE-ERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q-~~~--------~ 139 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++.. ....+++.++|++| .+. +
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcHHH
Confidence 55666666 469999999999999999999999999998 999999987643 22345668999984 322 2
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... ......+...++.++++.++|....++++.+||+|||||++|+
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 165 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIA 165 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 3322211 1111223345677889999998888999999999999999874
No 169
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=1.5e-21 Score=178.72 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=91.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHh-hhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+++ +.++|++|++. +
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 105 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKE 105 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHH
Confidence 445566654 59999999999999999999999999998 9999999988654444433 46999999864 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.. ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 106 ~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 106 NILFGLP---KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred Hhhcccc---cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHH
Confidence 3333221 1123456788899999998888999999999999999974
No 170
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=2.9e-21 Score=162.25 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=87.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC-----CCCCchHHH----hhhceeccchhHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERIR 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d-----i~~~~~~~~----~~~iG~v~Q~~~~ 139 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.+ +......++ ++.++|++|++..
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRD 100 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCccc
Confidence 444555544 59999999999999999999999999998 999999988 654443332 4479999999731
Q ss_pred ----------HHHhcC--CCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 ----------AVETGG--CPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ----------~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++.... .......+...++.++++.+++.. ..++.+.+||+|||||++|+
T Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 101 GLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred ccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 221110 000111223456788999999974 67899999999999999975
No 171
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=177.40 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=89.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchh---H------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER---I------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~---~------ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+. ..+++.++|+||++ .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 455666654 59999999999999999999999999998 999999988754333 23456899999973 1
Q ss_pred --HHHHhcCCC----C------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP----H------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~----~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... . ........++.++|+.++|. ...++++.+|||||||||+|+
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 333332110 0 01122345678899999996 678999999999999999974
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=1.9e-21 Score=163.30 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC-------------chHHHhhhceeccc
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-------------EDGEFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~-------------~~~~~~~~iG~v~Q 135 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++... ....+++.++|++|
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 99 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 99 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEec
Confidence 445555553 69999999999999999999999999998 9999999877421 12345678999999
Q ss_pred hhH--------HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhh-ccccccCChHHHHhhhcC
Q 029723 136 ERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKA-DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 136 ~~~--------~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~-~~~~~eLSGGqrq~~~~i 189 (189)
++. +++.++.. .........+++.++++.++|.... ++++.+||+|||||++|+
T Consensus 100 ~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 100 HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred CcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 864 33332211 1111223456788899999998654 889999999999999874
No 173
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-21 Score=183.65 Aligned_cols=120 Identities=17% Similarity=0.068 Sum_probs=91.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH---HHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~------ 138 (189)
.+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+.. .++++|+||||++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 3556777764 59999999999999999999999999998 9999999988654432 24568999999862
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .. ...+..+++.++|+.++|. ...++++.+|||||||||+|+
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA 475 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA 475 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 222221110 11 1223346788999999996 578999999999999999974
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.5e-21 Score=161.19 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=85.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|++|++. +++
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl 96 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence 455666654 69999999999999999999999999998 999999988765555566778999999864 333
Q ss_pred HhcCCCCCChHHH-----HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIRED-----ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d-----~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+.... ...... ...+.++++.+ ++....+.++.+||+|||||++|+
T Consensus 97 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 150 (234)
T cd03251 97 AYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA 150 (234)
T ss_pred hccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHH
Confidence 332211 111110 11234555555 566566788999999999999874
No 175
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=1.4e-21 Score=177.65 Aligned_cols=119 Identities=11% Similarity=-0.084 Sum_probs=89.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE------ 142 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~------ 142 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+..++++.++|++|++...+.
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 97 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDD 97 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhh
Confidence 455555553 69999999999999999999999999998 9999988877544445556679999998642110
Q ss_pred --hcCCCCCCh-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 143 --TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 143 --~g~~~~~~~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.....+.. ....+++.++|+.++|....++++.+|||||||||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 98 TGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHH
Confidence 010111110 12346788999999998888999999999999999974
No 176
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.7e-21 Score=162.93 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|++. |+ |+|.++|.++.. .....+++.++|++|++.
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 45666666 3599999999999999999999999864 56 999999988753 223345678999999863
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. ......+++.++++.+++.. ..++.+.+||||||||++|+
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 101 KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 333332111 11 11223456788899999843 46788999999999999874
No 177
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=179.48 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=90.9
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIAN 435 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHH
Confidence 34566666664 59999999999999999999999999998 999999999988888888999999999975 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------ccc----cccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-------DLL----LCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~----~~eLSGGqrq~~~~i 189 (189)
|+.++..... +.+++.++++.+++.+.. +.. -.+||||||||++|+
T Consensus 436 Ni~~~~~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 436 NIAYARTEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHhcCCCCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 6666532212 345566666666654322 222 356999999999874
No 178
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-21 Score=165.95 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=86.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH---------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------- 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~--------- 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ..+++.++|++|++..
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEeccccccccCCCcchh
Confidence 455666654 59999999999999999999999999998 999999988731 1123469999998631
Q ss_pred -HHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 -AVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 -~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ........++.++++.++|....++++.+||||||||++|+
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~la 154 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA 154 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 111111110 01122345678899999998888999999999999999874
No 179
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=1e-21 Score=156.94 Aligned_cols=94 Identities=26% Similarity=0.315 Sum_probs=80.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++......++++.++|+||
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------- 80 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------------- 80 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-------------
Confidence 45555665 469999999999999999999999999998 999999998866555566678999887
Q ss_pred CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+++....++.+.+||+|||||++|+
T Consensus 81 ------------~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 81 ------------ALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred ------------HHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 77788888778889999999999999874
No 180
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.3e-21 Score=160.54 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=89.1
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... .++.++|++|++. ++
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHHH
Confidence 45566665 469999999999999999999999999998 999999988864332 2468999999865 22
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.... .........++.++++.++|....++.+.+||+||+||++|+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 2221110 011122345677899999998889999999999999999874
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=162.98 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=89.7
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCC-----chHHHhhhceeccchhH--
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDGEFLMRNGALPEERI-- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~-----~~~~~~~~iG~v~Q~~~-- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ....+++.++|+||++.
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV 98 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence 45566666 469999999999999999999999999863 8999999887432 12345668999999864
Q ss_pred ------HHHHhcCCCC---------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~~---------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+...++.++++.++|....++.+.+||+|||||++|+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 3343332110 00123345788999999998788999999999999999874
No 182
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=177.00 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=91.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+.. .+++.++|+||++. +
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 92 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMD 92 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHH
Confidence 45566666 469999999999999999999999999998 9999999988644433 34567999999864 3
Q ss_pred HHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ....+..+++.++|+.+++....++++.+|||||||||+|+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 93 NMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred HhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 443332111 11122345688899999998778999999999999999974
No 183
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=1.9e-21 Score=160.24 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=87.6
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------ 138 (189)
....+++|. .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++. ...+++.++|+||++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhcccEEEeCCCCccCcCCc
Confidence 355666666 4699999999999999999999999998 87 99999998874 2356678999999864
Q ss_pred --HHHHhcCCCC----CChHHHHHHHHH-HHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPH----AAIREDISINLG-PLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~----~~~~~d~~~v~~-~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ........++.+ +|+.+++....++.+.+||+||+||++|+
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHH
Confidence 3443321111 011112234455 89999998788899999999999999874
No 184
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.85 E-value=2.3e-21 Score=182.80 Aligned_cols=115 Identities=15% Similarity=0.061 Sum_probs=92.6
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 34566677765 59999999999999999999999999998 999999999998889999999999999986 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
|+.++.. . +.+++.++++..++.+.... .-..||||||||++|+
T Consensus 546 Ni~~~~~--~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 546 NIAGGAP--L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred HHhcCCC--C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 6666532 2 34566777777777653322 2356999999999874
No 185
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.1e-21 Score=158.20 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=93.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
++..++++.- .|+++.++||+||||||||++++|+..|. |+|.++++.|..... .-|+|||+.. +
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cceeEeccCccchhhHHHH
Confidence 4455555554 48999999999999999999999999999 999999999864322 3589999975 6
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.+|... .+...+-.+.+.+.|..++|.+..++++-+|||||||||.|+
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiA 144 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIA 144 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHH
Confidence 77776532 334445567788999999999888999999999999999764
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=176.61 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=91.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++. +
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 98 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAE 98 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHH
Confidence 455666654 59999999999999999999999999998 9999999988543332 34568999999864 4
Q ss_pred HHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ....+...++.++|+.++|....++++.+||||||||++|+
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 99 NLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 444432111 11223346788999999998778899999999999999974
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=162.84 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=88.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++ |+ |+|.++|.++.. .+...+++.++|+||++.
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 455666663 699999999999999999999999986 46 999999988743 223455678999999864
Q ss_pred ----HHHHhcCCC--CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 108 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 108 MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 333332111 112223345678899999874 356889999999999999874
No 188
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=164.18 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=88.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. .....+++.++|++|++.
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 455666664 6999999999999999999999999874 6 999999988753 233456678999999864
Q ss_pred ----HHHHhcCCC-CC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. ...+...++.++++.++|.. ..++.+.+||+|||||++|+
T Consensus 114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 344332211 11 11223456788999999953 46788999999999999874
No 189
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.3e-21 Score=158.76 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=84.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++......++++.++|++|++. +++
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHh
Confidence 455555654 58999999999999999999999999998 999999998865556667788999999975 222
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
.+. ... ..+++.++++.+++.... +..+.+||+|||||++|+
T Consensus 99 ~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 99 DPF--GEY----SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred CcC--CCC----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 111 111 223455666666665433 468899999999999874
No 190
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=3.1e-21 Score=161.35 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=87.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC-----CCCCchHHH----hhhceeccchhHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEERIR 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d-----i~~~~~~~~----~~~iG~v~Q~~~~ 139 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.+ +......++ ++.++|++|++..
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD 97 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence 345666664 69999999999999999999999999998 999999877 544333322 3569999998631
Q ss_pred ----------HHHhcC--CCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 140 ----------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ----------~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.... ............+.++++.+++. ...++.+.+||||||||++|+
T Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 98 GLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred ccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 221100 00011112345678899999997 478999999999999999874
No 191
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=3.1e-21 Score=176.55 Aligned_cols=121 Identities=19% Similarity=0.099 Sum_probs=93.1
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhHH-----
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERIR----- 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~~----- 139 (189)
..+.++++|.-+ ||++||||++|||||||.|+|+|+++|+ |.|.++|.++. ..+..+.++++-++||+|..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 567788888876 9999999999999999999999999998 99999998832 11233456789999999861
Q ss_pred -----HHHhcCC--CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 -----AVETGGC--PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 -----~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.+..... ......+..+++.++|+.++|.. .++++|.|||||||||++|+
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 1111111 11112334457999999999986 69999999999999999984
No 192
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.84 E-value=3e-21 Score=159.92 Aligned_cols=118 Identities=16% Similarity=0.069 Sum_probs=81.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++. +++
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 455556553 69999999999999999999999999998 999999988765555556678999999865 222
Q ss_pred HhcCCCCCChHHHHH-----HHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~-----~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+..... ...+... .+.+.++.+ ++....++.+.+||+|||||++|+
T Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 98 RYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred hccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 2221111 1111000 122233333 444456777899999999999874
No 193
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.1e-21 Score=162.06 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=87.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++.. .....+++.++|++|++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 455666664 6999999999999999999999999873 5 999999988742 223455678999999854
Q ss_pred -----HHHHhcCCC-C-CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCP-H-AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... . .......+++.++|+.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 333322111 1 11122345677889999884 457889999999999999874
No 194
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-21 Score=166.40 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc-C----C-ccEEEeecCCCCCchHHH----hhhceeccchh
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEF----LMRNGALPEER 137 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~-p----~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~ 137 (189)
..+.++++|.-+ ||++||||.+|||||||.+.|+|+++ | . |+|.++|.++...+..++ .+.|++|||+|
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 457778888765 89999999999999999999999997 3 3 899999999988887653 34899999998
Q ss_pred HH----------HHHhcCCCCC---ChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 138 IR----------AVETGGCPHA---AIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~~----------~i~~g~~~~~---~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
.. ++.-....+. ..++..+++.++|+.++|.+ ..+.+|.+|||||+|||.|+
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IA 165 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIA 165 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHH
Confidence 61 1111111111 23345678999999999974 57999999999999999874
No 195
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=3.1e-21 Score=178.70 Aligned_cols=114 Identities=20% Similarity=0.124 Sum_probs=88.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+||||||||||+++|+|++ |+ |+|.++|.++...+..++++.|+||+|++. +|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 3556666764 59999999999999999999999999 77 999999999998889999999999999986 67
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++. +.. +.+++.++++..++.+ .....-..||||||||++|+
T Consensus 443 I~~g~-~~~----~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialA 497 (588)
T PRK11174 443 VLLGN-PDA----SDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497 (588)
T ss_pred hhcCC-CCC----CHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 77763 222 2344555555544432 23333456999999999974
No 196
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=3.3e-21 Score=157.89 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=86.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ..+++.++|++|++. ++
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hhhhhceEEeecCcccccCCcHHHH
Confidence 455555554 59999999999999999999999999998 999999988753 234457999999854 22
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . ....+++.++++.++|....++++.+||+|||||++|+
T Consensus 103 l~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 103 LHFLCGLH-G-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred HHHHHHhc-C-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHH
Confidence 22211100 0 11234567889999998888999999999999999874
No 197
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=4e-21 Score=178.26 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=92.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+...+++.|+||+|++. +|
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 4566777775 48999999999999999999999999998 999999999988888899999999999986 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
+.++. . . +.+++.++++.+++.+..++ ....||||||||++|+
T Consensus 435 I~~~~-~-~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 435 VTLGR-D-I----SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred HHhCC-C-C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 66653 2 2 34556777777776543322 3356999999999874
No 198
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=4e-21 Score=176.41 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHH---HhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE---FLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------- 138 (189)
....+++|.- +|++++|+|||||||||||++|+|+++.+|+|+++|.++...+..+ ++++++|+||++.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 3456666665 5999999999999999999999999963499999999886443322 3567999999862
Q ss_pred ---HHHHhcCCCC---CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~---~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+...++.++|+.++|. ...++++.+|||||||||+|+
T Consensus 380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 437 (529)
T PRK15134 380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA 437 (529)
T ss_pred cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH
Confidence 3333321101 12223346788999999997 468999999999999999974
No 199
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=4.5e-21 Score=159.36 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=88.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... ..++.++|++|++. ++
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHHHH
Confidence 444555544 59999999999999999999999999998 99999998875432 23568999999875 33
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.... ........+.+.++++.+++....++.+.+||+||+||++|+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 3322110 111122345678899999998888999999999999999874
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=5.8e-21 Score=174.07 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=89.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHH-HhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~------- 138 (189)
..++++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++...+..+ +++.++||||++.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 95 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV 95 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence 455666664 5999999999999999999999999986 5 99999999886544433 3457999999864
Q ss_pred -HHHHhcCCCC-----CChHHHHHHHHHHHhhcCCchhh-ccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~-~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+...++.++|+.++|.... ++++.+|||||||||+|+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 3444432111 11223345788899999997544 678999999999999974
No 201
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.4e-21 Score=161.28 Aligned_cols=119 Identities=14% Similarity=0.122 Sum_probs=87.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 455666664 6999999999999999999999999874 6 9999999887432 12345678999999864
Q ss_pred ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .........++.++++.+++. ...++.+.+|||||+||++|+
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 333332110 111122334677899999883 456889999999999999974
No 202
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6e-21 Score=157.73 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=81.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+...+++.++|++|++. +++
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 95 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI 95 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence 445555553 69999999999999999999999999998 999999988865555566778999999975 233
Q ss_pred HhcCCCCCChHHHH-----HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDI-----SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~-----~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+.... ....... ..+.+.++.+ ++....++.+.+||+|||||++|+
T Consensus 96 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la 149 (236)
T cd03253 96 RYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIA 149 (236)
T ss_pred hhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 222111 1111000 0122233333 344445667889999999999874
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=7e-21 Score=161.20 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=89.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch---HHHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~---~~~~~~iG~v~Q~~~------- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|++|++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK 106 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence 455666663 59999999999999999999999999998 999999988765433 234678999999863
Q ss_pred ---HHHHhcCC--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ......+...++.++|+.+++. ...++.+.+||+|||||++|+
T Consensus 107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 11111100 0111223345688999999996 578999999999999999874
No 204
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=6.3e-21 Score=174.07 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=89.3
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH----------
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------- 138 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~---------- 138 (189)
..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++||+|++.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv 347 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcH
Confidence 45666654 48999999999999999999999999998 9999999888654432 34567999999851
Q ss_pred -HHHHhcCCCC-------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH-------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~-------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..+++.++|+.++|. ...++++.+|||||||||+|+
T Consensus 348 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 2333321100 11123345688999999995 578999999999999999874
No 205
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=7.9e-21 Score=176.19 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDN 433 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHH
Confidence 4566777764 59999999999999999999999999998 999999999988888889999999999986 55
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc----------ccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~----------~~~eLSGGqrq~~~~i 189 (189)
+.++.. . .+.+++.++++.+++.+..+. ....||||||||++|+
T Consensus 434 i~~~~~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA 487 (574)
T PRK11160 434 LLLAAP-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487 (574)
T ss_pred hhcCCC-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence 555432 1 145567888888888765443 4567999999999974
No 206
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.84 E-value=5.5e-21 Score=180.77 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=89.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.|+...+..++++.|+||+|++. +|
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHH
Confidence 4566677765 59999999999999999999999999998 999999999988888899999999999986 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
+.++. +.. +.+++.++++..++.+.. ......||||||||++|+
T Consensus 573 i~l~~-~~~----~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 573 LTLWD-PTI----PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred hhCCC-CCC----CHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 65542 222 344555666666554322 233456999999999974
No 207
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=4.6e-21 Score=154.82 Aligned_cols=107 Identities=8% Similarity=-0.038 Sum_probs=82.4
Q ss_pred CcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhc
Q 029723 75 RNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG 144 (189)
Q Consensus 75 ~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g 144 (189)
++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... .+.++|++|++. +++.+.
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHHHHHHH
Confidence 55554 59999999999999999999999999998 99999998874321 345889988752 233221
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 145 ~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.... ....++.++++.+++....++.+.+||+|||||++|+
T Consensus 95 ~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la 135 (195)
T PRK13541 95 SEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA 135 (195)
T ss_pred HHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence 1110 1234677888999998888999999999999999874
No 208
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.84 E-value=6.6e-21 Score=175.56 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=91.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|++|++. +|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 4566777764 69999999999999999999999999998 999999999988888888999999999986 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-----------cccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-----------LCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-----------~~eLSGGqrq~~~~i 189 (189)
+.++..... +.+++.++++.+++.+...+. -..||||||||++|+
T Consensus 426 i~~~~~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 426 IAYGRTEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HhcCCCCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 655532122 355677777777765433322 246999999999974
No 209
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.84 E-value=5.9e-21 Score=180.76 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=89.3
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++++-+ ||+++|+|+||||||||+|+|+|+++|+ |+|.++|.|+...+...+|+.||||+|++. +
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e 565 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRE 565 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHH
Confidence 456677777765 8999999999999999999999999998 999999999999999999999999999976 5
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.++.. .. ..+.+.+++...++ +......-..||||||||++|+
T Consensus 566 Ni~l~~p-~~----~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA 621 (709)
T COG2274 566 NIALGNP-EA----TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621 (709)
T ss_pred HHhcCCC-CC----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 6555432 22 22333344333333 2233444557999999999974
No 210
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.8e-21 Score=160.07 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=86.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. .....+++.++|+||++.
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP 106 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence 455566653 6999999999999999999999999873 4 999999998752 223455678999999864
Q ss_pred ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... . ...+...++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 107 QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 3333321111 1 1122334577888888884 246889999999999999874
No 211
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.9e-21 Score=163.79 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=87.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.. .....+++.++|+||++.
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP 133 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc
Confidence 455666664 699999999999999999999999986 56 999999988743 233455678999999864
Q ss_pred ----HHHHhcCCC-CCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... ... .....++.++++.++|. ...++++.+||||||||++|+
T Consensus 134 ~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 134 KSIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred CCHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 333322110 111 12345678899999884 356889999999999999874
No 212
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.83 E-value=8.5e-21 Score=173.80 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +|
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 4566666665 59999999999999999999999999998 999999999988888889999999999985 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
+.++... . ..+++.++++.+++.+.. .....+||||||||++|+
T Consensus 416 i~~~~~~-~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 416 IRLARPD-A----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred HhccCCC-C----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 6554321 1 234556666666654432 234567999999999874
No 213
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=3e-21 Score=158.60 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=85.6
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++... . .+.++|+||++. ++
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHHHH
Confidence 44556665 469999999999999999999999999998 9999999876421 1 257999999864 22
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..... . ....++.++++.++|....++.+.+||+||+||++|+
T Consensus 91 ~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 91 LKVHTTLL-G--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA 136 (223)
T ss_pred HHHHHHHc-C--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence 22211000 0 1235678899999999888999999999999999874
No 214
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=8.4e-21 Score=173.44 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=88.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEEeecCCCCCch-HHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~-------- 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++ |+ |+|.++|.++..... ..+++.++|++|++.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM 356 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC
Confidence 455666665 599999999999999999999999998 46 999999988754333 234557999999851
Q ss_pred ---HHHHhcCC---CC---CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGC---PH---AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~---~~---~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. .. ....+...++.++|+.++|. ...++++.+|||||||||+|+
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 23333211 00 11123345688999999996 468999999999999999874
No 215
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=8.9e-21 Score=155.31 Aligned_cols=114 Identities=14% Similarity=0.023 Sum_probs=80.8
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH-----
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI----- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~----- 138 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++..... ..+++.++|++|++.
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 3556667664 69999999999999999999999999998 999999987754321 234567999999974
Q ss_pred --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... . ...++.++++.+++... .+.++.+||+|||||++|+
T Consensus 95 ~~~nl~~~~~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 95 VEENITFGSP--F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred HHHHHhhcCc--C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 23322211 1 11223445555555332 3467899999999999874
No 216
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.83 E-value=5.4e-21 Score=180.88 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=90.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 4566777765 59999999999999999999999999998 999999999988888899999999999976 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++..+.. +.+++.++++..++.+ ........||||||||++|+
T Consensus 568 i~l~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 568 LLLGAKENV----SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623 (708)
T ss_pred HhccCCCCC----CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence 766533322 2344555555555433 22333456999999999974
No 217
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=9e-21 Score=158.60 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=86.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ | + |+|.++|.++... ....+++.++|+||++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP 98 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence 455566653 699999999999999999999999986 3 5 9999999987532 23345678999999864
Q ss_pred -----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+..+++.++++.+++.. ..+..+.+||+|||||++|+
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 3333321111 112223456788899999853 45778999999999999874
No 218
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.6e-21 Score=158.38 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=86.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
..++++|.- +|++++|+|+|||||||||++|+|++++ + |+|.++|.++.. .....+++.++|++|++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP 97 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence 556666664 5999999999999999999999998762 5 999999998753 223355678999999864
Q ss_pred ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... . ......+++.++++.+++. ...++++.+||+|||||++|+
T Consensus 98 ~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 98 MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 3333321111 1 1122345677888888864 346888999999999999974
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=8.1e-21 Score=174.40 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCchHH---Hh-hhceeccchhH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~ 138 (189)
.+..+++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++......+ .+ +.+|||||++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 3556667764 5999999999999999999999999986 6 99999999886544332 22 47999999863
Q ss_pred ----------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 139 ----------RAVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.. .......+...++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iA 168 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIA 168 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHH
Confidence 1121110 001122334567889999999974 36889999999999999974
No 220
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=1e-20 Score=161.44 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=91.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
....+++|.- +|++++|+|+|||||||||++|+|++++.|+|.|+|.++......++++.|+|+||++. +++
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 3566777666 58999999999999999999999999845999999999977777778889999999985 233
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhhcccccc-----------CChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-----------SGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e-----------LSGGqrq~~~~i 189 (189)
... ... ..+++.++++.++|....++++.. ||+|||||++|+
T Consensus 98 ~~~--~~~----~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 98 DPY--GKW----SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred hhc--cCC----CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 211 111 234677889999998888888876 999999999874
No 221
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=9.6e-21 Score=170.41 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=101.8
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH-------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~------- 138 (189)
..++.+++|.-+ |||.+|+|.|||||||||++|.|+++|+ |+|.|+|+.+.-.++.+ ++..||+|+|.+.
T Consensus 17 ~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV 96 (501)
T COG3845 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTV 96 (501)
T ss_pred EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccch
Confidence 445666666654 9999999999999999999999999999 99999999987655555 4558999999976
Q ss_pred -HHHHhcCCC----CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP----HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.++... ...++...+++.++.+++||.-..+.++.+||-||||||+|+
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 677777654 234466778899999999999889999999999999999874
No 222
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.7e-21 Score=160.18 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=87.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH--
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~-- 138 (189)
...++++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 101 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF 101 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence 3455556655 5999999999999999999999999986 5 9999999987532 22345678999999864
Q ss_pred -----HHHHhcCCCCCChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++............++.++|+.++|.. ..++.+.+||+||+||++|+
T Consensus 102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 3333332111111123456788999998853 34677899999999999874
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-20 Score=172.02 Aligned_cols=119 Identities=19% Similarity=0.118 Sum_probs=88.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH---------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.++|++|++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 345556554 59999999999999999999999999998 9999999887543333 34568999999862
Q ss_pred --HHHHhcCCCC-------CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPH-------AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~-------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... .......+.+.++|+.+++. ...++++.+|||||||||+|+
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG 408 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH
Confidence 3333322111 01122345678899999994 578999999999999999874
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=157.43 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=87.2
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 45566666 46999999999999999999999999874 5 9999999988532 22345678999999864
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .. ...+...++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 344332111 11 1122345677889999874 356889999999999999874
No 225
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=1.3e-20 Score=178.00 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=90.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +|
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 4566777765 59999999999999999999999999998 999999999988888899999999999986 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
+.++.. .. +.+++.++++.+++.+.. ......||||||||++|+
T Consensus 559 i~~~~~-~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 559 IALGAP-YA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HhCCCC-CC----CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 655432 12 344556666666554432 233457999999999974
No 226
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=9.1e-21 Score=160.10 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=84.2
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchHHHh--hhceeccch
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL--MRNGALPEE 136 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~~~~--~~iG~v~Q~ 136 (189)
+..++++..+|++++|+|||||||||||++|+|+++|+ |+|. +++.++.......++ ..++|++|.
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 95 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQY 95 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecch
Confidence 44455677789999999999999999999999999998 9996 667766432221121 246787776
Q ss_pred hHH-------HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 137 RIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 137 ~~~-------~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
... ++... +........+.++++.++|....++.+.+||+|||||++|+
T Consensus 96 ~~~~~~~~~~~i~~~----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 96 VDLIPKAVKGKVGEL----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hccCchHHHHHHHHH----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 431 11111 11123446788999999998888999999999999999874
No 227
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=156.85 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=84.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++| +|+|.++|.++.. .....+++.++|++|++.
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP 98 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence 45666666 46999999999999999999999999875 3999999988753 223355678999999864
Q ss_pred -----HHHHhcCC-CCC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGC-PHA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~-~~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ... ...+..+++.++++.+++. ...++++.+||||||||++|+
T Consensus 99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 33332211 111 1112234566667777653 356888999999999999874
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=1.2e-20 Score=172.81 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=86.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe-ecC---CCCCc---hHHHhhhceeccchhH--
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TND---IFTKE---DGEFLMRNGALPEERI-- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~-g~d---i~~~~---~~~~~~~iG~v~Q~~~-- 138 (189)
.+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++ +.+ +.... ...+++.++|+||++.
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 377 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY 377 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence 3556667654 59999999999999999999999999998 999996 543 22211 1234567999999864
Q ss_pred ------HHHHhcCCCCCChHHHHHHHHHHHhhcCCch-----hhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.............++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 3333211111111223456788999999964 57899999999999999974
No 229
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=158.72 Aligned_cols=119 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++... ....+++.++|++|++.
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP 115 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence 445555553 699999999999999999999999864 56 9999999887532 22345678999999864
Q ss_pred ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... . ........+.++++.+++. ...++.+.+||||||||++|+
T Consensus 116 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 116 KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 3333321111 1 1112234567788888874 356889999999999999874
No 230
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=1.6e-20 Score=171.25 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=89.7
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCCch-HHHhhhceeccchhH-------
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~------- 138 (189)
....+++|. .+|++++|+|||||||||||++|+|+++| + |+|.++|.++..... ..+++.++|++|++.
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 355667776 46999999999999999999999999985 6 999999988854332 345668999999952
Q ss_pred ----HHHHhcCCC------CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP------HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~------~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .........++.++|+.+++.. ..++++.+|||||||||+|+
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 233222110 0111223456889999999964 57999999999999999974
No 231
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-20 Score=156.70 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=85.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++... ...++++.++|++|++.
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP 98 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence 44555555 3699999999999999999999999986 36 9999999887431 22345668999999864
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. .......++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 99 FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 333332110 01 1111234677888988884 356889999999999999874
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=158.34 Aligned_cols=119 Identities=12% Similarity=0.101 Sum_probs=85.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.. ....++++.++|++|++.
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 104 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP 104 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc
Confidence 455566664 699999999999999999999999976 36 999999988742 233456678999999854
Q ss_pred ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++...........+++.++++.+++. ...++.+.+||||||||++|+
T Consensus 105 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 105 KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 333332211100112234566777887774 246788999999999999874
No 233
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.9e-20 Score=158.42 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=87.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.. .....+++.++|+||++.
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 114 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA 114 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence 455556655 599999999999999999999999986 46 999999988743 123345678999999864
Q ss_pred ----HHHHhcCCC-C-CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-H-AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... . ........++.++|+.++|. ...++++.+||+||+||++|+
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 115 KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 344332111 1 11122345677889999884 356889999999999999874
No 234
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.83 E-value=2.1e-20 Score=172.77 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=90.7
Q ss_pred CCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723 68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 68 ~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------- 138 (189)
..+..++++|. ++|+.++|+||+|||||||+++|++++.|+ |+|.++|.|+...+...+++.|+||+|++.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence 44566777774 469999999999999999999999999997 999999999999999999999999999985
Q ss_pred HHHHhcCCCCCChHHHHHHHHHH---------Hhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAIREDISINLGP---------LEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~~~d~~~v~~~---------L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.++... .. .+++.++ ++.+ |++.........||||||||++|+
T Consensus 421 ~NI~~g~~~-at----~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 421 ENIALGRPD-AT----DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHhcCCCC-CC----HHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHH
Confidence 677777543 21 2233333 3444 333333444557999999999974
No 235
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.83 E-value=1.1e-20 Score=179.17 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=90.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|++. +|
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 4566777765 49999999999999999999999999998 999999999988888889999999999986 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
+.++... . +.+++.++++..++.+.. ......||||||||++|+
T Consensus 575 I~~g~~~-~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 575 IAYGLTD-T----PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HhcCCCC-C----CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 6665321 1 234556666666654332 223357999999999974
No 236
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=157.56 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
+..+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ...++++.++|+||++.
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 455666664 5999999999999999999999999873 6 9999999887532 22345678999999864
Q ss_pred ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... . ......+.+.++++.+++.. ..++.+.+||+||+||++|+
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 98 MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 3333321111 1 11123445678888888853 46889999999999999874
No 237
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=7.3e-21 Score=153.56 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=89.5
Q ss_pred ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----------ch---HHHhhhceeccchh
Q 029723 73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------ED---GEFLMRNGALPEER 137 (189)
Q Consensus 73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----------~~---~~~~~~iG~v~Q~~ 137 (189)
.-+++.. +|+++.|||.+||||||||+||.-+..|+ |.|.++|..|... +. ..+|.++++|||..
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F 102 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHF 102 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence 3444443 59999999999999999999999999999 9999999877421 11 22355899999997
Q ss_pred H--------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 138 I--------RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~--------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+ +|+.-.-.. .....+..+++..+|.++||.+..+.+|..||||||||++|+
T Consensus 103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 7 222211111 122345677889999999999999999999999999999974
No 238
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-20 Score=157.32 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=86.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCCc--hHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.... ...+++.++|+||++.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 455666663 699999999999999999999999986 45 99999998874322 2245678999999864
Q ss_pred ----HHHHhcCC-CCC--ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHA--AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~--~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ... ........+.++++.++|.. ..++.+.+||+|||||++|+
T Consensus 100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 33333210 011 11223456778899999864 45778999999999999874
No 239
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.7e-20 Score=156.89 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=87.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee------cCCCCCchHHHhhhceeccchhH----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g------~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++| .++......++++.++|++|++.
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 104 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH 104 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC
Confidence 456666664 69999999999999999999999999987 8777665 45543444556778999999864
Q ss_pred ----HHHHhcCCCC-C-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... . ...+...++.++++.+++. ...++.+..||+|||||++|+
T Consensus 105 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 105 LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 3333321111 1 1122345678899999985 356889999999999999874
No 240
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=2.2e-20 Score=171.03 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=88.3
Q ss_pred cccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH----------
Q 029723 72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---------- 138 (189)
Q Consensus 72 ~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~---------- 138 (189)
..+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+++.++....... +++.|+|++|++.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~ 358 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL 358 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence 4566666 459999999999999999999999999998 99999999886544433 3457999999741
Q ss_pred -HHHHhcC---CCC-CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGG---CPH-AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~---~~~-~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.... ... .......+++.++|+.++|. ...++++.+||||||||++|+
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence 2221110 000 11122345678899999997 678999999999999999874
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-20 Score=176.51 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=88.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC----------CCchHH---Hh-hhceec
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF----------TKEDGE---FL-MRNGAL 133 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~----------~~~~~~---~~-~~iG~v 133 (189)
.+..+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.+++.++. .....+ ++ +.||||
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 4566677764 59999999999999999999999999998 99999876431 112222 22 479999
Q ss_pred cchhH----------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 134 PEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 134 ~Q~~~----------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
||++. +++.++... .....+..+++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA 180 (623)
T PRK10261 110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA 180 (623)
T ss_pred EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHH
Confidence 99862 344333211 1222334567889999999953 57899999999999999984
No 242
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.82 E-value=1.3e-20 Score=158.14 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=85.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. ...+++.++|++|++.
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--cccccceEEEEecCCccccCcc
Confidence 455566653 6999999999999999999999999998 8 999999988742 1122357999999863
Q ss_pred ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
+++..... .........++.++++.++|.. ..++.+.+||+|||||++|+
T Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 96 HTMHTHARETCL-ALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ccHHHHHHHHHH-HcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 11111000 0011123356888999999975 46889999999999999874
No 243
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.82 E-value=1.2e-20 Score=164.29 Aligned_cols=102 Identities=22% Similarity=0.141 Sum_probs=80.6
Q ss_pred EEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCC-CCChHHHH
Q 029723 86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI 155 (189)
Q Consensus 86 LiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~-~~~~~~d~ 155 (189)
|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.++|+||++. +++.++... .....+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999998 999999998854433 3568999999864 444443211 11122334
Q ss_pred HHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.++++.++|....++++.+||||||||++|+
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvala 112 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHH
Confidence 5788999999999889999999999999999974
No 244
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2e-20 Score=159.22 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCCc-hHHHhhhceeccchhH----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGEFLMRNGALPEERI---- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~~---- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.... ...+++.++|+||++.
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~ 115 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPM 115 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCc
Confidence 455566654 6999999999999999999999999985 5 99999998875432 2345678999999864
Q ss_pred ---HHHHhcCCCC--CChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+....+.++++.++|.. ..++.+.+||+|||||++|+
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 3343332111 111223345677889998863 35788999999999999874
No 245
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.7e-20 Score=155.32 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=86.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC-CchHHHhhhceeccchhH----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~-~~~~~~~~~iG~v~Q~~~---- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++| + |+|.++|.++.. .+...+++.++|+||++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPM 97 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcc
Confidence 455566654 5999999999999999999999999885 4 999999988742 234456678999999864
Q ss_pred ---HHHHhcCCCC-CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPH-AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~-~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... .. .....+++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 3333321111 11 112234567788888874 356788999999999999874
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=3e-20 Score=155.14 Aligned_cols=119 Identities=14% Similarity=0.010 Sum_probs=85.6
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHHhh-hceeccchhH-------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~------- 138 (189)
..++++|. .+|++++|+|+|||||||||++|+|+ ++|+ |+|.++|.++.......+.+ .++|++|++.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 101 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSN 101 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccH
Confidence 55666666 46999999999999999999999998 4677 99999999886554444333 5889999853
Q ss_pred -HHHHhcCCCC--------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH--------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~--------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i 189 (189)
+++.+..... ....+...++.++|+.+++. ...++.+. .|||||+||++|+
T Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 102 ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 2222221100 01112235677899999997 46788887 4999999999874
No 247
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.7e-20 Score=160.39 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=85.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++... ....+++.++|++|++.
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 133 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP 133 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc
Confidence 455666664 699999999999999999999999864 37 9999999887432 22345678999999864
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. ......+++.++++.+++. ...++.+.+||||||||++|+
T Consensus 134 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 134 KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 333332111 01 1122345677888888873 456889999999999999874
No 248
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.8e-20 Score=155.29 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=87.1
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|++. |+ |+|.++|.++... +..++++.++|+||++.
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 45666666 4699999999999999999999999864 36 9999999887532 23455678999999864
Q ss_pred ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... .......+++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 3333321111 11122345677889998874 345788999999999999874
No 249
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=2e-20 Score=157.04 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA 150 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~ 150 (189)
+|++++|+|||||||||||++|+|+++|+ |+|.+++. .|+|++|++. +++........
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~- 90 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFY- 90 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhcc-
Confidence 69999999999999999999999999998 99998874 4788888753 22221110000
Q ss_pred hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 151 IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 151 ~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.....+.++++.++|....++++.+||||||||++|+
T Consensus 91 --~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 127 (246)
T cd03237 91 --THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIA 127 (246)
T ss_pred --ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHH
Confidence 1123467789999998888999999999999999974
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=2e-20 Score=171.40 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=85.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEee-----------------------cCCC----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDIF---- 119 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g-----------------------~di~---- 119 (189)
...+++|.- +|++++|+|||||||||||++|+|++ +|+ |+|.+++ .++.
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 94 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV 94 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence 456666664 59999999999999999999999997 687 9999872 2221
Q ss_pred ---CCch---HHHhhhceeccchh-H--------HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723 120 ---TKED---GEFLMRNGALPEER-I--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNL 183 (189)
Q Consensus 120 ---~~~~---~~~~~~iG~v~Q~~-~--------~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr 183 (189)
.... ..+++.++|+||++ . +++.++.. ......+...++.++|+.++|....++++.+||||||
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 174 (520)
T TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 (520)
T ss_pred hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence 1011 23456799999972 2 33333211 1112233456788999999998888999999999999
Q ss_pred HhhhcC
Q 029723 184 QTISFI 189 (189)
Q Consensus 184 q~~~~i 189 (189)
|||+|+
T Consensus 175 qrv~iA 180 (520)
T TIGR03269 175 QRVVLA 180 (520)
T ss_pred HHHHHH
Confidence 999974
No 251
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.4e-20 Score=156.14 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=85.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|++. | + |+|.++|.++... ...++++.++|++|++.
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 100 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP 100 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence 445555554 599999999999999999999999875 2 4 9999999988543 23455678999999874
Q ss_pred ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ........++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 101 KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 3333321111 01122344677788888774 346889999999999999874
No 252
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.82 E-value=2.3e-20 Score=173.11 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=87.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+|+||||||||+++|+|+++|+ |.|.++|.++...+..++++.|+||+|++. +|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 428 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDN 428 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHH
Confidence 3556666665 58999999999999999999999999998 999999999988888889999999999985 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++. +.. +.+++.++++.+++.+ ........||||||||++|+
T Consensus 429 i~~~~-~~~----~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 429 IRVGR-PDA----TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HhcCC-CCC----CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 65543 222 2334445555554432 22233456999999999974
No 253
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.5e-20 Score=155.79 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=85.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhc---ccC--C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF---LRD--K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gl---l~p--~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+ ++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP 97 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence 44555555 36999999999999999999999997 454 4 9999999988542 22355678999999864
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. .......++.++++.++|.. ..++.+.+||+|||||++|+
T Consensus 98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 333322111 01 11123456788899998853 46788999999999999874
No 254
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=157.25 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++.. ....++++.++|+||++.
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 118 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP 118 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence 45555655 3699999999999999999999999987 57 999999988742 223455678999999964
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcC----CchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELS----NLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lg----L~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .. ........+.++++.++ +....++++.+||+|||||++|+
T Consensus 119 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 119 KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 344332111 11 11112344566777764 34456889999999999999874
No 255
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=157.59 Aligned_cols=119 Identities=12% Similarity=0.088 Sum_probs=84.1
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|+||++.
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~ 114 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP 114 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc
Confidence 45556665 46999999999999999999999999862 4 9999999887532 22345678999999864
Q ss_pred ----HHHHhcCCCCCChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.............+.++++.+++. ...++++.+||+|||||++|+
T Consensus 115 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 115 KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 233322111000111234456678887763 456789999999999999874
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.8e-20 Score=156.41 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=86.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. .....+++.++|++|++.
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 445566663 6999999999999999999999999874 4 999999988743 223345678999999864
Q ss_pred ----HHHHhcCCCC--CChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... ....+..+++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 3333221110 11122345677888888873 357889999999999999874
No 257
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.1e-20 Score=154.52 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=85.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC------ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~------G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ....+++.++|+||++.
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP 98 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence 44555555 469999999999999999999999999884 9999999887532 23355678999999975
Q ss_pred ----HHHHhcCCCC-CCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-AAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ... .+....+.++++.+++. ...++.+.+||+|||||++|+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 3333321110 111 11234566778888764 356889999999999999874
No 258
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.7e-20 Score=169.26 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred CCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723 64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 64 ~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
+|..+.+....++|.-+ |+.+||+|+|||||||+||+|.+++..+|+|.|+|+++...+...+|+.||||||+..
T Consensus 360 ~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd 439 (591)
T KOG0057|consen 360 SYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND 439 (591)
T ss_pred EeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch
Confidence 44444556677777765 9999999999999999999999999966999999999999999999999999999965
Q ss_pred ---HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
.|+.+|. +.. ..+++.+++++.++.+.. ..+...|||||||||+|+
T Consensus 440 TIl~NI~YGn-~sa----s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 440 TILYNIKYGN-PSA----SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred hHHHHhhcCC-CCc----CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 4555553 333 345566666776665433 334557999999999973
No 259
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=6e-20 Score=167.03 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=87.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCC-chHHHhhhceeccchhHH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIR------- 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~~------- 139 (189)
...+++|.- +|++++|+|||||||||||++|+|++++ + |+|.++|.++... ....+++.++|++|++..
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 455666654 5999999999999999999999999876 4 9999999876322 223455689999998631
Q ss_pred ---HHHhcCCC--CC--C-hHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 ---AVETGGCP--HA--A-IREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ---~i~~g~~~--~~--~-~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++..+... .. . .....+++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 11111111 00 0 1223456889999999986 78999999999999999874
No 260
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=2.5e-20 Score=153.61 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=90.3
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------H
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----------R 139 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----------~ 139 (189)
.+.++++- +|+++.|||.|||||||||++|+|-+.|+ |.|.|++.|++..+...+...++-|||+|. +
T Consensus 22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieE 101 (263)
T COG1101 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEE 101 (263)
T ss_pred HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHH
Confidence 33444433 58999999999999999999999999999 999999999998888888889999999986 4
Q ss_pred HHHhcCCC----CCCh---HHHHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP----HAAI---REDISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~----~~~~---~~d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.+.... .+.. ..-.+...+.|+.+ +|++.++.++.-|||||||.++++
T Consensus 102 Nl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 102 NLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 54433221 1221 11223344555555 557788999999999999999874
No 261
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6e-20 Score=153.31 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=85.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cC---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RD---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|++ +| + |+|.++|.++... ....+++.++|+||++.
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 445555554 59999999999999999999999985 35 4 9999999887432 22345678999999864
Q ss_pred ----HHHHhcCC-CCCC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHAA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. .... ......++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 33333211 1111 112235677788888874 356889999999999999874
No 262
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=6e-20 Score=169.28 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=90.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~ 147 (189)
+...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|++|++...-.+-...
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 3566667664 58999999999999999999999999998 999999999987778888899999999986322221111
Q ss_pred CCChHHHHHHHHHHHhhcCCchhhccc-----cccCChHHHHhhhcC
Q 029723 148 HAAIREDISINLGPLEELSNLFKADLL-----LCESGGGNLQTISFI 189 (189)
Q Consensus 148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~-----~~eLSGGqrq~~~~i 189 (189)
. ...+.+.+.++++.+++....... ...||||||||++|+
T Consensus 417 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 417 G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence 1 112455678889999887543321 358999999999874
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=4.9e-20 Score=149.84 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=79.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++. ++
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~ 101 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence 3555666664 69999999999999999999999999998 999999998865555566778999999874 22
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+. ... ....+.++++ .++.+.+||+||+||++|+
T Consensus 102 l~~~--~~~----~~~~~~~~l~-------~~~~~~~LS~G~~qrv~la 137 (207)
T cd03369 102 LDPF--DEY----SDEEIYGALR-------VSEGGLNLSQGQRQLLCLA 137 (207)
T ss_pred hccc--CCC----CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHH
Confidence 2111 101 1222334443 3578899999999999874
No 264
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.81 E-value=4.4e-20 Score=170.37 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=88.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|+.++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++|+||++. +|
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 3455666655 69999999999999999999999999998 999999999988888888899999999985 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.. .. +.+++.++++.+++.+. .......||||||||++|+
T Consensus 434 i~~~~~-~~----~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 434 IRYGRP-DA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred HhcCCC-CC----CHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 655432 12 23455556666555332 2233456999999999874
No 265
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=7.6e-20 Score=166.31 Aligned_cols=122 Identities=13% Similarity=0.056 Sum_probs=101.8
Q ss_pred CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH------
Q 029723 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------ 138 (189)
Q Consensus 68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------ 138 (189)
...+..+++|.-. ||+++|+|.||||||||+|+|+|.++|+ |+|.++|+.+...++.+. ...|..|+|+.+
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls 99 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence 3456677777764 9999999999999999999999999999 999999999876666554 458999999986
Q ss_pred --HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|++++..+.. .++...+++.++|+.+++....+.++.+||.||||.|+|+
T Consensus 100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 78888876542 3356677888999999986458999999999999999874
No 266
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.1e-20 Score=155.67 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=86.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++... ....+++.++|++|++.
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 119 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP 119 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc
Confidence 445555653 6999999999999999999999999873 6 9999999988532 23345678999999864
Q ss_pred ----HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCch----hhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHAAI-REDISINLGPLEELSNLF----KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~~----~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ..... ....+++.++++.+++.. ..++.+.+||+|||||++|+
T Consensus 120 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 120 KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 33332211 11111 122355778888888853 46788999999999999874
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.81 E-value=1.6e-20 Score=157.92 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh--cCC
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET--GGC 146 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~--g~~ 146 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++ +..++|++|++.....+ ...
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~~~l~~~~~ 87 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLPLTVN 87 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccccccChhHH
Confidence 445555653 69999999999999999999999999998 9999875 13689999986411000 000
Q ss_pred CC--CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 PH--AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ~~--~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.. ........++.++++.++|....++++.+||+|||||++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 132 (251)
T PRK09544 88 RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLA 132 (251)
T ss_pred HHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHH
Confidence 00 00011234678899999999888999999999999999874
No 268
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=1.2e-19 Score=151.03 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=84.5
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHh-hhceeccchhHH------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR------ 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~-~~iG~v~Q~~~~------ 139 (189)
..++++|. .+|++++|+|+|||||||||++|+|++ +|+ |+|.++|.++...+...++ +.++|++|++..
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 95 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSN 95 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhH
Confidence 45666666 469999999999999999999999995 587 9999999988655544443 469999998641
Q ss_pred --HHHhcCC--CC------CChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723 140 --AVETGGC--PH------AAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI 189 (189)
Q Consensus 140 --~i~~g~~--~~------~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i 189 (189)
++.+... .. +.......++.++++.+++. ...++.+. +||||||||++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 1111100 00 00111234667888999985 35666665 8999999999874
No 269
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.5e-20 Score=169.92 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred CCCCC--CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-
Q 029723 64 YFSRR--APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI- 138 (189)
Q Consensus 64 ~~~~~--~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~- 138 (189)
.|..| .+...+++|.-+ ||+++||||||+||||+.++|..++.|+ |+|.++|.||.+.+..-++++||+|-|+|.
T Consensus 474 aYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL 553 (716)
T KOG0058|consen 474 AYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL 553 (716)
T ss_pred ecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee
Confidence 34444 357788888776 9999999999999999999999999999 999999999999999999999999999997
Q ss_pred ------HHHHhcCCCCCChHHHHHH------HHHHHhhcC--CchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCPHAAIREDISI------NLGPLEELS--NLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~~~~~~~d~~~------v~~~L~~lg--L~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+||.+|.. .... ++... +.+.+..|. .+.....+-.+||||||||+||+
T Consensus 554 Fs~sI~eNI~YG~~-~~t~-e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 554 FSGSIRENIAYGLD-NATD-EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred ecccHHHHHhcCCC-CCCH-HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 88888865 2221 11111 222333332 22234455568999999999985
No 270
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9.6e-20 Score=157.18 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++ |+ |+|.++|.++... ....+++.++|++|++.
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 139 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP 139 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc
Confidence 45555665 3699999999999999999999999986 56 9999999887532 23455678999999864
Q ss_pred ----HHHHhcCCCC-------------CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~~-------------~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... .. ......++.++|+.+++. ...++++.+||||||||++|+
T Consensus 140 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 140 KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIA 212 (305)
T ss_pred ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHH
Confidence 3343321100 00 012245678889988874 356888999999999999874
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-19 Score=165.67 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=86.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH-HhhhceeccchhH---------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI--------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~-~~~~iG~v~Q~~~--------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......+ +++.++|++|++.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 342 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD 342 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence 445555544 59999999999999999999999999998 99999998886544333 3557999999852
Q ss_pred --HH-----HHhcCCC-C-CChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 --RA-----VETGGCP-H-AAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~-----i~~g~~~-~-~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
++ +...... . ........++.++++.+++. ...++++.+|||||||||+|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 01 1110000 0 11122345678899999995 467999999999999999874
No 272
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.80 E-value=9.1e-20 Score=161.49 Aligned_cols=128 Identities=22% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCCCCCC---CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHH---hhhceecc
Q 029723 62 PGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEF---LMRNGALP 134 (189)
Q Consensus 62 ~g~~~~~---~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~---~~~iG~v~ 134 (189)
.|.+.+. ..+.+.++|.-+ |+.+||||.+|||||||=++|+++++++|.|.|.|.++...+..++ ++++-+||
T Consensus 290 ~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVF 369 (534)
T COG4172 290 GGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVF 369 (534)
T ss_pred CccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEE
Confidence 4554432 345577777765 8999999999999999999999999999999999999987776654 67899999
Q ss_pred chhH----------HHHHhcCCC---CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 135 EERI----------RAVETGGCP---HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 135 Q~~~----------~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
|+|. +.|.-|..- .+...+-.+++.++|+.+||+. ..+++|.|+|||||||+||+
T Consensus 370 QDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA 438 (534)
T COG4172 370 QDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA 438 (534)
T ss_pred eCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence 9996 344444432 3333556678999999999985 68999999999999999974
No 273
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.4e-20 Score=152.57 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=83.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc--C---C-ccEEEeecCCCCC--chHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~--p---~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++ | + |+|.++|.++... ....+++.++|++|++.
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 99 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP 99 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence 455666653 699999999999999999999999865 4 4 9999999887431 22345568999999864
Q ss_pred ----HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHAAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+... ..... .....++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 100 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 100 FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 33332211 01111 11234566677777763 356789999999999999874
No 274
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.80 E-value=1.1e-19 Score=168.40 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|. ++|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++. +|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 345566665 469999999999999999999999999998 999999999987777788899999999975 55
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCch-----------hhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-----------~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... . ..+++.++++.+++.+ ........||||||||++|+
T Consensus 409 i~~~~~~-~----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lA 463 (569)
T PRK10789 409 IALGRPD-A----TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIA 463 (569)
T ss_pred HhcCCCC-C----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 5554321 1 2234445555554432 23344568999999999874
No 275
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.80 E-value=9.8e-20 Score=153.13 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=81.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH---H--Hh
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA---V--ET 143 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~---i--~~ 143 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++... + ++
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl 115 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence 455666664 69999999999999999999999999998 99999999886656666778899999987511 1 11
Q ss_pred cCCCCCChHHHH------HHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 144 GGCPHAAIREDI------SINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~~~~~~~~d~------~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
....... .... ..+.++++.+ +++...+..+.+||+|||||++|+
T Consensus 116 ~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 116 DPECKCT-DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred CcCCCCC-HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 1110000 0000 0122334444 444445667789999999999874
No 276
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=158.76 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=87.5
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc-----CC-ccEEEeecCCCCC--chHHHhhhceeccchhH--
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-- 138 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~-----p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~-- 138 (189)
...++++|.-+ |++++|+|+|||||||||++|+|+++ |+ |+|.++|.++... ...++++.++|+||++.
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 35666666654 89999999999999999999999986 45 9999999998532 23456778999999975
Q ss_pred -----HHHHhcCCCC-CC-hHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCPH-AA-IREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~~-~~-~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.... .. .......+.++|+.++|. ...++.+.+||||||||++|+
T Consensus 176 ~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 4454432111 11 111123466778888763 356789999999999999874
No 277
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=1.1e-19 Score=171.61 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=88.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+|+||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +|
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDN 550 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHH
Confidence 3566666664 59999999999999999999999999998 999999999988888899999999999975 55
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++. +.. ..+++.++++.+++ +.........||||||||++++
T Consensus 551 i~~~~-~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 551 IALCN-PGA----PFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605 (694)
T ss_pred HhcCC-CCC----CHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence 55542 222 23344444444443 3333444568999999999874
No 278
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.80 E-value=1.4e-19 Score=167.31 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=91.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~ 147 (189)
...++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++...-.+....
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 3556677764 59999999999999999999999999998 999999999988777888899999999976322221111
Q ss_pred CCChHHHHHHHHHHHhhcCCchhhccc------cccCChHHHHhhhcC
Q 029723 148 HAAIREDISINLGPLEELSNLFKADLL------LCESGGGNLQTISFI 189 (189)
Q Consensus 148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~------~~eLSGGqrq~~~~i 189 (189)
.......+++.++++.+++.+..+.. ...||||||||++|+
T Consensus 436 -~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 436 -EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred -cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHH
Confidence 11122455678899999987654433 357999999999974
No 279
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=7e-20 Score=187.92 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=94.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+.++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. ...++++.+||++|++. +
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E 1022 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAE 1022 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCHHH
Confidence 3556666654 59999999999999999999999999998 999999999853 34456678999999864 4
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... ......+..+++.++|+.++|.+..++++.+||||||||++|+
T Consensus 1023 ~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1023 HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 4443221 1122233456788999999999889999999999999999874
No 280
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=7.6e-20 Score=187.66 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=94.2
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..+.++++|.-+ ||+++|+||||||||||||+|+|+++|+ |+|.++|.++.+ ...+.++.|||+||++.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHH
Confidence 346677777754 9999999999999999999999999999 999999999853 34455678999999864
Q ss_pred HHHHhcC-CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~-~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.. .......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 3333321 11122223345678899999999889999999999999999874
No 281
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=1.6e-19 Score=166.28 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.-+ |++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++. +|
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 34566666654 8999999999999999999999999998 999999999987777788889999999975 45
Q ss_pred HHhcCCCCCChHHH-----HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIRED-----ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d-----~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+.. +.....+. ...+.+.++.+ +++.........||||||||++|+
T Consensus 412 i~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 412 IARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 54332 11111110 01123444444 444445566788999999999874
No 282
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=1e-19 Score=150.28 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=82.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHhcCC
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGGC 146 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~g~~ 146 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.. +...+++.+.... +++.+...
T Consensus 36 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----~~~~~~~~~~~tv~enl~~~~~ 110 (224)
T cd03220 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----LGLGGGFNPELTGRENIYLNGR 110 (224)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----hcccccCCCCCcHHHHHHHHHH
Confidence 3555666655 59999999999999999999999999998 999999987631 1112344333222 44433211
Q ss_pred -CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 -PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 -~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.........+++.++++.++|....++.+.+||+|||||++|+
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 154 (224)
T cd03220 111 LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFA 154 (224)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 1112223345678889999998888999999999999999874
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=152.20 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=85.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCC--CchHHHhhhceeccchhH---
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI--- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~--- 138 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++| +|+|.++|.++.. .....+++.++|++|++.
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 445555655 5999999999999999999999999998 4899999988732 223345678999999854
Q ss_pred ----HHHHhcCCC-CC-ChHHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~-~~-~~~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .. ...+...++.++++.+++. ...++.+.+||+||+||++|+
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 233222110 11 1122345677889999874 356888999999999999874
No 284
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-19 Score=151.98 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=85.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC-----C-ccEEEeecCCCC----CchHHHhhhceeccchhH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT----KEDGEFLMRNGALPEERI 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p-----~-G~I~i~g~di~~----~~~~~~~~~iG~v~Q~~~ 138 (189)
....+++|.- +|++++|+|+|||||||||++|+|+++| + |+|.++|.++.. ....++++.++|++|++.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 3556666664 5999999999999999999999999874 5 999999877631 123355678999999854
Q ss_pred -------HHHHhcCC-CCCCh-HHHHHHHHHHHhhcCCc----hhhccccccCChHHHHhhhcC
Q 029723 139 -------RAVETGGC-PHAAI-REDISINLGPLEELSNL----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -------~~i~~g~~-~~~~~-~~d~~~v~~~L~~lgL~----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ..... ....+++.++++.+++. ...++.+.+||+|||||++|+
T Consensus 110 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 110 PFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred CCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 33333211 11111 11235667788888763 456788999999999999874
No 285
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=165.70 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=93.7
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC----C-ccEEEeecCCCCCchHHHh----hhceeccchhH
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p----~-G~I~i~g~di~~~~~~~~~----~~iG~v~Q~~~ 138 (189)
..+..+++|+-. ||++||||.+||||||++++|.|++++ . |+|.++|.|+......+++ +.|+||||+|.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 456677888765 999999999999999999999999985 2 9999999999877765542 47999999986
Q ss_pred H----------HHHhcCCCC--CChHHHHHHHHHHHhhcCCchhhc--cccccCChHHHHhhhcC
Q 029723 139 R----------AVETGGCPH--AAIREDISINLGPLEELSNLFKAD--LLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~----------~i~~g~~~~--~~~~~d~~~v~~~L~~lgL~~~~~--~~~~eLSGGqrq~~~~i 189 (189)
. ++.-....+ ....+..+++.++|++++|.+... ++|.+|||||||||.++
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iA 166 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIA 166 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHH
Confidence 1 111111111 124556778999999999986444 59999999999999864
No 286
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=1.9e-19 Score=145.75 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=96.6
Q ss_pred CCCCCCC-CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 62 PGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 62 ~g~~~~~-~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.|.|.+. .-+...++|.-+ |+.++|||.||||||||.|+|+|+++|+ |+|.+++..+.-.+..-+.+.|-++||+|+
T Consensus 18 ~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 18 TGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred hhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 3444332 345567777765 8999999999999999999999999999 999999998865555556678999999997
Q ss_pred HHH----HhcC------C--CCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 RAV----ETGG------C--PHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i----~~g~------~--~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+ +.|. . -.+......+++.+.|..+||- +.++.++..||-||||||+++
T Consensus 98 ts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA 161 (267)
T COG4167 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161 (267)
T ss_pred cccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence 211 1111 0 1122233456788999999985 578999999999999999874
No 287
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.7e-19 Score=163.72 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=92.4
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.-+ |+.++|||+||||||||+++|+|+++|+ |+|.|||.++...++..+++.++||+|+|. +|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 45556666554 8999999999999999999999999998 999999999999999999999999999986 66
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchh------hcccccc----CChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFK------ADLLLCE----SGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~------~~~~~~e----LSGGqrq~~~~i 189 (189)
+.++... . ..+.+.+++++.++.+. +|..+.+ |||||+||++++
T Consensus 415 i~l~~~~-~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 415 ILLARPD-A----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred hhccCCc-C----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 6665432 2 35667777777776543 2444555 999999999874
No 288
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=1.6e-19 Score=152.83 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCC
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~ 146 (189)
..+.++++|.-+ ||++||||.||||||||-|+|+||++|+ |+|.+.|.++...+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------------------ 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------------------ 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc------------------------
Confidence 356788888765 8999999999999999999999999999 99999999975432
Q ss_pred CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 147 PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
..+..+++.++|+.+++.. .+++++.+|||||+||++|+
T Consensus 82 ----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHH
Confidence 1224567999999999975 78999999999999999874
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2.2e-19 Score=175.36 Aligned_cols=121 Identities=18% Similarity=0.158 Sum_probs=90.1
Q ss_pred CCCCCC--CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-
Q 029723 64 YFSRRA--PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI- 138 (189)
Q Consensus 64 ~~~~~~--~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~- 138 (189)
.|..|. ...++++|.-+ |++++|||||||||||++++|.+++.|+ |+|.++|.|+...+...+|.+||.|+|+|.
T Consensus 359 sYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 359 SYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred cCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 444443 56666766655 8999999999999999999999999999 999999999999999999999999999997
Q ss_pred ------HHHHhcCCCCCChHHHHHHHHHHH---------hhc--CCchhhccccccCChHHHHhhhcC
Q 029723 139 ------RAVETGGCPHAAIREDISINLGPL---------EEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ------~~i~~g~~~~~~~~~d~~~v~~~L---------~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+|+.+|... .. .+++.+++ ..| +++......-.+||||||||+||+
T Consensus 439 F~~tI~eNI~~G~~d-at----~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 439 FATTIRENIRYGKPD-AT----REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIA 501 (1228)
T ss_pred hcccHHHHHhcCCCc-cc----HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHH
Confidence 677777533 21 22222222 222 222222333345999999999984
No 290
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.79 E-value=3e-19 Score=166.03 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=85.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+++.++|++|++. +|+
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 429 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence 456677764 69999999999999999999999999998 999999999987777788889999999975 566
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.. ... .+++.++++.. +++.........||||||||++|+
T Consensus 430 ~~~~~-~~~----~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 430 RLGRE-GAT----DEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hcCCC-CCC----HHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 55432 121 12222223222 334345566778999999999874
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.1e-20 Score=146.91 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=56.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc--hHHHhhhceeccchhH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~ 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++.... ...+++.++|++|++.
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA 86 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc
Confidence 455556663 69999999999999999999999999998 99999998886543 3456678999999864
No 292
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.78 E-value=3.4e-19 Score=167.65 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=92.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------ 138 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.++|.++......++ ++.++|+||++.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 102 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT 102 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence 45566666 469999999999999999999999999998 999999999876655443 457999999874
Q ss_pred --HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.+.... .....+..+++.++++.++|....++.+.+||+||+||++|+
T Consensus 103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 233222111 111234456788999999999889999999999999999874
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.78 E-value=2.9e-19 Score=141.94 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=57.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++++.++|++|++
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD 85 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence 445555553 69999999999999999999999999998 99999999887666666777899999986
No 294
>PRK13409 putative ATPase RIL; Provisional
Probab=99.78 E-value=8.6e-20 Score=170.20 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=82.4
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchH--HHhhhceeccchh
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDG--EFLMRNGALPEER 137 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~--~~~~~iG~v~Q~~ 137 (189)
..+++...+|++++|+|||||||||||++|+|+++|+ |+|. ++|.++...... +...++++.+|..
T Consensus 90 L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~ 169 (590)
T PRK13409 90 LYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYV 169 (590)
T ss_pred EecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccch
Confidence 3445556789999999999999999999999999999 9997 888777432111 1112355556543
Q ss_pred HHHHHh---cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 138 IRAVET---GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~~~i~~---g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.....+ .....+.......++.++|+.++|....++.+.+||||||||++|+
T Consensus 170 ~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 170 DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 311110 0001111122345788999999998888999999999999999974
No 295
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.4e-19 Score=144.83 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=86.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
..+.+++|.- +||++-|.||||||||||||+|+|+++|+ |+|++++..+.... ..+.+.+-|+--.+. +
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yLGH~~giK~eLTa~E 94 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYLGHQPGIKTELTALE 94 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHhhccccccchhhHHH
Confidence 4556666665 49999999999999999999999999999 99999998885432 223344444432222 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.|-...+-. .+...+.++|+.++|....+.++..||-|||+|||++
T Consensus 95 NL~F~~~~~~~--~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlA 142 (209)
T COG4133 95 NLHFWQRFHGS--GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHHHhCC--CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHH
Confidence 43332111100 1456788999999999999999999999999999974
No 296
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.1e-20 Score=149.41 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=75.1
Q ss_pred CCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhc
Q 029723 70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG 144 (189)
Q Consensus 70 ~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g 144 (189)
....+++|. .+|++++|+|||||||||||++|+|+++ |+ |+|.++|.++.... ..+++.++|++|++...
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~~~---- 95 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHF---- 95 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccccC----
Confidence 345566665 4699999999999999999999999998 77 99999999885432 34566899999985321
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 145 ~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+...+..... + .+. .++.+.+||+||+||++|+
T Consensus 96 --~~~tv~~~l~~~---~-~~~----~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 96 --PTLTVRETLDFA---L-RCK----GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred --CCCcHHHHHhhh---h-hhc----cccchhhCCHHHHHHHHHH
Confidence 112222111111 0 011 5778899999999999874
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=3.8e-19 Score=144.30 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++| .|+|++|++. ++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence 3555666655 59999999999999999999999999998 9999987 5899999875 33
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+... .. ...+.++++.+++ ....+..+.+||+|||||++|+
T Consensus 86 l~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 86 ILFGKP--FD----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred hccCCC--cC----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 333211 11 1122233333333 3334566889999999999874
No 298
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=4.4e-19 Score=179.97 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=92.6
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|+.+||||++|||||||+++|+|+++|+ |+|.|+|.|+...+..++++.|+||||+|. +
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 44677888876 48999999999999999999999999998 999999999998889999999999999986 4
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-------cccc----ccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-------DLLL----CESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-------~~~~----~eLSGGqrq~~~~i 189 (189)
|+.... .. ..+++.++|+.+++.+.. +..+ ..||||||||++|+
T Consensus 1403 NIdp~~--~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1403 NVDPFL--EA----SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred HhCccc--CC----CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence 443211 11 345677888888776532 2233 46999999999874
No 299
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.4e-19 Score=148.28 Aligned_cols=125 Identities=19% Similarity=0.111 Sum_probs=95.4
Q ss_pred CCCCCCCCcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchhH--
Q 029723 64 YFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI-- 138 (189)
Q Consensus 64 ~~~~~~~~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~-- 138 (189)
.|+++. ...+++|. ++||-.+|+|||||||||||++|++..+|+ |.+.+.|+.+-+.+. .+++++||+|..+-.
T Consensus 40 ~r~gk~-iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 40 RRNGKK-ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred EECCEe-eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 344444 44455554 469999999999999999999999999998 999999998866555 889999999865432
Q ss_pred --------HHHHhcCCCC------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --------RAVETGGCPH------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --------~~i~~g~~~~------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+..|.+.. ..-+++..++..+|+.+++....++++.+||-||||+|-|+
T Consensus 119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA 183 (257)
T ss_pred cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH
Confidence 1222222111 11145667888999999999999999999999999999764
No 300
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=3.9e-19 Score=179.91 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=91.3
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.-+ ||.+||||++|||||||+++|+|+++|+ |+|.++|.|+.+.+..++|++|++|||+|. +
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 456777777754 8999999999999999999999999998 999999999998889999999999999986 4
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
|+..+. .. ..+++.++|+..++.+... ..-..||||||||++|+
T Consensus 1329 NL~~~~--~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1329 NIDPFS--EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383 (1495)
T ss_pred HcCCCC--CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHH
Confidence 554332 11 3455667777776654322 22357999999999874
No 301
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=4.6e-19 Score=178.87 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=90.5
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC-----------------------------------------
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----------------------------------------- 107 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p----------------------------------------- 107 (189)
+..++++|.-+ |++++||||+|||||||+++|+|++.|
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 46677777665 899999999999999999999999998
Q ss_pred -------------C-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCCChHHHHHHHHHHHhhcC
Q 029723 108 -------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELS 166 (189)
Q Consensus 108 -------------~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~~~~~d~~~v~~~L~~lg 166 (189)
+ |+|.++|.|+...+...+++.|+||+|+|. +|+.++.. .. ..+.+.++++..+
T Consensus 1262 ~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~a----t~eeI~~A~k~A~ 1336 (1466)
T PTZ00265 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DA----TREDVKRACKFAA 1336 (1466)
T ss_pred cccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CC----CHHHHHHHHHHcC
Confidence 5 999999999998899999999999999986 77777643 22 2344555655555
Q ss_pred Cchh-------hcc----ccccCChHHHHhhhcC
Q 029723 167 NLFK-------ADL----LLCESGGGNLQTISFI 189 (189)
Q Consensus 167 L~~~-------~~~----~~~eLSGGqrq~~~~i 189 (189)
+.+. .+. .-..||||||||++|+
T Consensus 1337 l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIA 1370 (1466)
T PTZ00265 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370 (1466)
T ss_pred CHHHHHhCccccCCccCCCCCcCCHHHHHHHHHH
Confidence 4332 233 3446999999999985
No 302
>PLN03211 ABC transporter G-25; Provisional
Probab=99.77 E-value=4e-19 Score=167.56 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=86.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC---CccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
..++++|.- +|++++|+|||||||||||++|+|+++| +|+|.++|.++. .+.++.++||+|++.
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCCHH
Confidence 455556554 5899999999999999999999999987 399999998873 234567999999865
Q ss_pred HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhh-----ccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPH----AAIREDISINLGPLEELSNLFKA-----DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~-----~~~~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..+++.++|+.++|.+.. ++.+.+||||||||++|+
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 4444432111 12233446688999999997654 445778999999999874
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=4.6e-19 Score=180.26 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=91.6
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.-+ ||.+||||++|||||||+++|+|+++|+ |+|.++|.|+.+.+..++|++|++|||+|. +
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 356777777755 8999999999999999999999999998 999999999999999999999999999986 4
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
|+..+. . . ..+++.++|+..++.+.... ....||||||||++|+
T Consensus 1332 NLd~~~-~-~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1332 NLDPFN-E-H----NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred HhCcCC-C-C----CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence 554432 1 1 34556677777666543322 2347999999999974
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.8e-19 Score=162.71 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=79.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------- 138 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++. +.++|++|++.
T Consensus 334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~ 402 (530)
T PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLF 402 (530)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHH
Confidence 455566655 48999999999999999999999999998 99998752 36899999753
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.. .. ......+++.++|+.+++. ...++++.+||||||||++|+
T Consensus 403 ~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 403 DWMSQ--WR--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred HHHHH--hc--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 11111 00 0011345678899999994 578999999999999999874
No 305
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4e-19 Score=140.89 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=56.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.......+++.++|+||++
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~ 85 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP 85 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc
Confidence 455566664 59999999999999999999999999998 99999998876555556677899999986
No 306
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4.8e-19 Score=147.89 Aligned_cols=118 Identities=15% Similarity=0.012 Sum_probs=93.1
Q ss_pred CCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHh
Q 029723 67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET 143 (189)
Q Consensus 67 ~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~ 143 (189)
....++++++|.-. ||.+||||+||||||||||+|+|.++|+ |+|.++|.-..- +.-.+||-++-.. +|+.+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l-----i~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL-----IELGAGFDPELTGRENIYL 112 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh-----hhcccCCCcccchHHHHHH
Confidence 34566788888765 9999999999999999999999999999 999999863311 1225677666543 55544
Q ss_pred -cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 144 -GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 -g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+....+..++..++++++++.-+|.+..+.+++.+|-||+.|++|.
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs 159 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS 159 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh
Confidence 3334455567788899999999999999999999999999999984
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.1e-19 Score=144.26 Aligned_cols=67 Identities=27% Similarity=0.367 Sum_probs=56.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
..++++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++.... .++++.++|+||++.
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~ 83 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPS 83 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCc
Confidence 456666664 59999999999999999999999999998 99999998875433 456678999999864
No 308
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=2.3e-19 Score=142.97 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=69.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...+++.++|++|++... .
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~------~- 88 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLF------D- 88 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCCeee------c-
Confidence 444555554 58999999999999999999999999998 9999999877443 345667899999976311 1
Q ss_pred CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.... +.+ +.+||+||+||++|+
T Consensus 89 ~tv~-------~~i------------~~~LS~G~~qrv~la 110 (178)
T cd03247 89 TTLR-------NNL------------GRRFSGGERQRLALA 110 (178)
T ss_pred ccHH-------Hhh------------cccCCHHHHHHHHHH
Confidence 1111 111 789999999999874
No 309
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.2e-19 Score=146.30 Aligned_cols=119 Identities=16% Similarity=0.056 Sum_probs=99.0
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee-cCCCCCchHHHhh-hceeccchhH-------
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g-~di~~~~~~~~~~-~iG~v~Q~~~------- 138 (189)
.+.|+++|.-. ||.-+|||||||||||||.+|+|..+|+ |++++.+ .|+...+..++.+ .||.-||.|.
T Consensus 19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV 98 (249)
T COG4674 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTV 98 (249)
T ss_pred eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccH
Confidence 36677777664 9999999999999999999999999999 9999999 8998877776644 7999999886
Q ss_pred -HHHHhcCCCCCCh---------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 139 -RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 -~~i~~g~~~~~~~---------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+|+++..+....+ .+.+.+++++|+..+|.+..++....||-||||.+.|
T Consensus 99 ~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI 158 (249)
T COG4674 99 RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI 158 (249)
T ss_pred HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence 5555554433221 3456789999999999999999999999999999986
No 310
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=8e-19 Score=140.46 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=55.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchh
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER 137 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~ 137 (189)
...+++|.- +|++++|+|+|||||||||++|+|+++|+ |+|.++|.++..... ..+++.++|++|++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDR 84 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCc
Confidence 345555653 59999999999999999999999999998 999999998865543 33466899999985
No 311
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.76 E-value=9.7e-19 Score=163.75 Aligned_cols=117 Identities=16% Similarity=0.056 Sum_probs=90.8
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++++.- +||+++|+|||||||||||++|+|.+++ +|+|.++|.++. ..++++.++||+|++.
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCccCc
Confidence 3455555554 5999999999999999999999999876 389999998873 3456778999999975
Q ss_pred --HHHHhcCCCCC----ChHHHHHHHHHHHhhcCCchhhccccc------cCChHHHHhhhcC
Q 029723 139 --RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLC------ESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~~----~~~~d~~~v~~~L~~lgL~~~~~~~~~------eLSGGqrq~~~~i 189 (189)
+++.++..... ...+...++.++|+.++|.+..+..+. .||||||||++|+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia 178 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFA 178 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHH
Confidence 55555432221 223445678999999999887788776 4999999999874
No 312
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=9.6e-19 Score=137.82 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=86.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC 146 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~ 146 (189)
.+|||+.|+||+||||||||..+.|.+.+ +|++.++++++...+. -+|.+|++||++- +|+.+..-
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhheeeeecccccccccccccceEEecC
Confidence 36999999999999999999999999986 3999999999976543 3568999999975 22222222
Q ss_pred CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+.+.-+..+..+..+|++.+|....++.|.+||||||.||++
T Consensus 104 ~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 104 ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHH
Confidence 222223345567889999999999999999999999999986
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.9e-19 Score=160.95 Aligned_cols=108 Identities=18% Similarity=0.077 Sum_probs=78.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++. ..|+|++|++. ++
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv~e~ 84 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTVLDT 84 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcHHHH
Confidence 455666664 58999999999999999999999999998 99998762 24888888752 22
Q ss_pred HHhcCC---------------CCC------------------ChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhh
Q 029723 141 VETGGC---------------PHA------------------AIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTI 186 (189)
Q Consensus 141 i~~g~~---------------~~~------------------~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~ 186 (189)
+.++.. ... ...+...++.++|+.++|... .++++.+|||||||||
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv 164 (530)
T PRK15064 85 VIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV 164 (530)
T ss_pred HHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH
Confidence 222110 000 000123567889999999753 4578999999999999
Q ss_pred hcC
Q 029723 187 SFI 189 (189)
Q Consensus 187 ~~i 189 (189)
+|+
T Consensus 165 ~lA 167 (530)
T PRK15064 165 LLA 167 (530)
T ss_pred HHH
Confidence 974
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=1.1e-18 Score=162.70 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~ 149 (189)
.+||+++|+|||||||||||++|+|+++|+ |+|.++ + .++|++|++. +++.++.. ..
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i~y~~Q~~~~~~~~tv~e~l~~~~~-~~ 428 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KISYKPQYIKPDYDGTVEDLLRSITD-DL 428 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eEEEecccccCCCCCcHHHHHHHHhh-hc
Confidence 469999999999999999999999999998 999875 1 4889999854 23332211 11
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. ....+.++|+.++|....++++.+|||||||||+|+
T Consensus 429 ~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 429 G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA 465 (590)
T ss_pred C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHH
Confidence 1 123567899999999889999999999999999974
No 315
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.75 E-value=1.7e-18 Score=174.74 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=64.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe-ecCCCCCchHHHhhhceeccchhH-------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~-g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
+...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++ +.++...+...+++.|+||+|++. +
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 4566677664 59999999999999999999999999998 999995 578877777778889999999975 6
Q ss_pred HHHhcC
Q 029723 140 AVETGG 145 (189)
Q Consensus 140 ~i~~g~ 145 (189)
++.++.
T Consensus 479 NI~~g~ 484 (1466)
T PTZ00265 479 NIKYSL 484 (1466)
T ss_pred HHHhcC
Confidence 666653
No 316
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.75 E-value=1.7e-18 Score=146.91 Aligned_cols=115 Identities=11% Similarity=-0.050 Sum_probs=77.9
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-HHHHhcC
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGG 145 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-~~i~~g~ 145 (189)
.....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.... . ....++.++... +++.+..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~-~-----~~~~~~~~~~tv~enl~~~~ 110 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV-I-----AISAGLSGQLTGIENIEFKM 110 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE-E-----ecccCCCCCCcHHHHHHHHH
Confidence 44556666665 59999999999999999999999999998 99999885210 0 011122221111 3333221
Q ss_pred C-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 146 C-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 146 ~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. ......+....+..+++.+++....++.+.+||+||+||++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~La 155 (264)
T PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155 (264)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 1 1122223344566788888998888999999999999999874
No 317
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.75 E-value=5.3e-19 Score=143.55 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=71.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHH-hhhceeccchhHHHHHhcC
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETGG 145 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~~~i~~g~ 145 (189)
...+++|.- +|++++|+|+|||||||||++|+|+ ++|+ |+|.++|.++.......+ ++.++|++|++...
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~----- 89 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI----- 89 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc-----
Confidence 556666664 5999999999999999999999999 4687 999999999876555444 34699999986421
Q ss_pred CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+... +.+.+ .....+||+||+||++|+
T Consensus 90 -~~~~-------~~~~l---------~~~~~~LS~G~~qrv~la 116 (200)
T cd03217 90 -PGVK-------NADFL---------RYVNEGFSGGEKKRNEIL 116 (200)
T ss_pred -cCcc-------HHHHH---------hhccccCCHHHHHHHHHH
Confidence 1111 11122 233468999999999874
No 318
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=137.29 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=88.0
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CC----chHHHhhhceeccchhH-------
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TK----EDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~----~~~~~~~~iG~v~Q~~~------- 138 (189)
++.|+ +.|+.+.|+||+|+|||||||.|.-+.-|. |++.|-+.... +. ...++|+.+|+|||...
T Consensus 20 di~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv 99 (242)
T COG4161 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTV 99 (242)
T ss_pred eeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHH
Confidence 44444 459999999999999999999999888888 99888775442 21 12356789999999865
Q ss_pred -HHHHhcCC--CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++-..-+ ..+...+...++.++|++|.|.+.+|++|-.|||||+|||+|+
T Consensus 100 ~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 100 QENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 22211111 1223345567889999999999999999999999999999974
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=1.7e-18 Score=160.14 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=78.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-H--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-I--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~--------~ 139 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+. .++ .|||++|++ . +
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~----------~i~~v~q~~~~~~~~~tv~e 407 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETV----------KLAYVDQSRDALDPNKTVWE 407 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-Cce----------EEEEEeCchhhcCCCCCHHH
Confidence 455566654 58999999999999999999999999998 999883 322 589999985 2 2
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ........+..+|+.+++.. ..++++.+||||||||++|+
T Consensus 408 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 408 EISGGLDII-KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred HHHhhcccc-cccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 333321110 01111234557899999964 57999999999999999874
No 320
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=1.2e-18 Score=137.56 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=53.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccc
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q 135 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++.++...+.. .+++.++|+||
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 82 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence 445555554 59999999999999999999999999998 9999999988655443 34567999988
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.75 E-value=1.8e-18 Score=159.74 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=78.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+ +.++ .|+|++|++. +
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~----------~i~~v~q~~~~~~~~~tv~e 405 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETV----------KLAYVDQSRDALDPNKTVWE 405 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCce----------EEEEEeCCccccCCCCcHHH
Confidence 455566664 58999999999999999999999999998 99988 3322 5899999852 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... .......++.++|+.+++.. ..++++.+|||||||||+|+
T Consensus 406 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 406 EISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred HHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 333322110 01111234567899999964 57899999999999999974
No 322
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=2.5e-18 Score=161.47 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=79.6
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
...+++|. .+|++++|+|||||||||||++|+|+++|+ |+|.+ +.++ .|+|++|++. +
T Consensus 334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~~~~tv~e 402 (635)
T PRK11147 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELDPEKTVMD 402 (635)
T ss_pred EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccCCCCCHHH
Confidence 45566665 469999999999999999999999999998 99988 5432 5899999742 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+.... .........+.++|+.+++. ...++++.+|||||||||+|+
T Consensus 403 ~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 403 NLAEGKQE-VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred HHHhhccc-ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 33332111 11111234677889999996 467899999999999999874
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=7e-19 Score=162.75 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++. ..|+||+|++. ++
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~e~ 90 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGYLPQEPQLDPEKTVREN 90 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecCCCCCCCCcHHHH
Confidence 556666655 48999999999999999999999999998 99988631 35899999863 33
Q ss_pred HHhcCCC---------------CCC---h-------------------HHHHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723 141 VETGGCP---------------HAA---I-------------------REDISINLGPLEELSNLFKADLLLCESGGGNL 183 (189)
Q Consensus 141 i~~g~~~---------------~~~---~-------------------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr 183 (189)
+.++... ... + .+...++.++|+.++|. ..++++.+||||||
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqk 169 (556)
T PRK11819 91 VEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGER 169 (556)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHH
Confidence 3332100 000 0 00134577889999996 47899999999999
Q ss_pred HhhhcC
Q 029723 184 QTISFI 189 (189)
Q Consensus 184 q~~~~i 189 (189)
|||+|+
T Consensus 170 qrv~la 175 (556)
T PRK11819 170 RRVALC 175 (556)
T ss_pred HHHHHH
Confidence 999974
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.74 E-value=3e-18 Score=173.73 Aligned_cols=114 Identities=16% Similarity=0.070 Sum_probs=90.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|+.+||+|++|||||||+++|+|++.|+ |+|.++|.|+.+.+..++|++|++|||+|. +|
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~N 1379 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHH
Confidence 4667777775 48999999999999999999999999998 999999999999999999999999999986 44
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchh-------hcccc----ccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFK-------ADLLL----CESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-------~~~~~----~eLSGGqrq~~~~i 189 (189)
+.... .. ..+.+.++|+.+++.+. ++..+ ..||||||||++|+
T Consensus 1380 Ldp~~--~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1380 LDPFS--QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred cCccc--CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 43111 11 34456677777766432 23334 45999999999874
No 325
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-18 Score=141.06 Aligned_cols=108 Identities=16% Similarity=0.015 Sum_probs=85.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHhh-hceeccchhHH--------HHHhcCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR--------AVETGGCP 147 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~~-~iG~v~Q~~~~--------~i~~g~~~ 147 (189)
+||+.+|+||||||||||.++|+|.- +.+ |+|.++|.||..+++.++.+ .|...||.|.+ ++......
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~ 108 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence 59999999999999999999999986 456 99999999999998888755 78888999871 22211100
Q ss_pred -----CCChHHHHHHHHHHHhhcCCch-hhcccccc-CChHHHHhhhc
Q 029723 148 -----HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGGNLQTISF 188 (189)
Q Consensus 148 -----~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~e-LSGGqrq~~~~ 188 (189)
.. ..+...++.++++.|++.+ .+++.+.+ +|||||+|..|
T Consensus 109 ~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 109 RRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 11 2345678889999999986 67887775 99999999876
No 326
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.74 E-value=2.9e-18 Score=155.06 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+...+++|.-. |+.++||||+|||||||.|+|.|..+|. |.|.++|-++...+..++-+.|||+||+-. +
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae 428 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH
Confidence 467778888765 8999999999999999999999999998 999999999998888899999999999864 4
Q ss_pred HHHhcCCCCCChHHHHHH---------HHHHHhhcCCchhhcccc----ccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISI---------NLGPLEELSNLFKADLLL----CESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~---------v~~~L~~lgL~~~~~~~~----~eLSGGqrq~~~~i 189 (189)
||.--. +.. |.+. +.+++-.| ..-.+..+ ..||||||||++++
T Consensus 429 NIaRf~-~~~----d~~kIieAA~lAgvHelIl~l--P~GYdT~iG~~G~~LSgGQRQRIaLA 484 (580)
T COG4618 429 NIARFG-EEA----DPEKVIEAARLAGVHELILRL--PQGYDTRIGEGGATLSGGQRQRIALA 484 (580)
T ss_pred HHHhcc-ccC----CHHHHHHHHHHcChHHHHHhC--cCCccCccCCCCCCCCchHHHHHHHH
Confidence 432111 011 2222 33344333 22233443 46999999999874
No 327
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=6.8e-18 Score=164.97 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=92.0
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++.+|.-+ |+.++||||+||||||++.+|-+++.|+ |.|.++|.|+.+.+...+|++|+.|.|+|. +
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrE 1082 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRE 1082 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHH
Confidence 466677777765 8999999999999999999999999998 999999999999999999999999999997 7
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhh---------c--CCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEE---------L--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~---------l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.+|... .. .+++.++++. | |++.....+-.+||||||||+||+
T Consensus 1083 NI~YG~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1083 NIAYGSEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHhccCCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 88888333 32 2333333333 2 223334445568999999999985
No 328
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=6.8e-19 Score=142.07 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=67.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCC
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~ 146 (189)
...+++|. .+|++++|+|||||||||||++|+|+++ |+ |+|.+++.++. ..+++.++|++|++..+
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~~~------ 91 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHS------ 91 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCccc------
Confidence 55666776 4699999999999999999999999863 67 99999998874 34567899999975311
Q ss_pred CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+...+..... ..+ .+|||||+||++|+
T Consensus 92 ~~~tv~~~l~~~-~~~-------------~~LSgGe~qrv~la 120 (192)
T cd03232 92 PNLTVREALRFS-ALL-------------RGLSVEQRKRLTIG 120 (192)
T ss_pred cCCcHHHHHHHH-HHH-------------hcCCHHHhHHHHHH
Confidence 112221111110 000 19999999999874
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.3e-18 Score=154.16 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=95.5
Q ss_pred CCCCC-CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--
Q 029723 64 YFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-- 138 (189)
Q Consensus 64 ~~~~~-~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-- 138 (189)
.|+++ .++.++++|.-+ ||.++|+|++|||||||+++|+|.+.|+ |+|.++|.++...+++++++.|+++.|.+.
T Consensus 345 ~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred ecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 33443 367788888765 9999999999999999999999999999 999999999998888889999999999865
Q ss_pred -----HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 139 -----RAVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -----~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
+|+.++... . ..+.+.++|++++|.+.... --..||||||||++++
T Consensus 425 ~~Tlr~NL~lA~~~-A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 425 SGTLRDNLRLANPD-A----SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred HHHHHHHHhhcCCC-C----CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 444444322 2 34567778888888654332 2356999999999874
No 330
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.74 E-value=3.7e-18 Score=138.08 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcC
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~ 145 (189)
...++++|.- +|++++|+|||||||||||++|+|++ +|+ |+|.++|.++.. ..+++.++|++|++..
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~------ 93 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDIL------ 93 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCcccC------
Confidence 3556666664 59999999999999999999999999 988 999999998753 2456789999998531
Q ss_pred CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.+.+...++.... .. +.+||+||+||++|+
T Consensus 94 ~~~~t~~~~i~~~----~~----------~~~LS~G~~qrv~la 123 (194)
T cd03213 94 HPTLTVRETLMFA----AK----------LRGLSGGERKRVSIA 123 (194)
T ss_pred CCCCcHHHHHHHH----HH----------hccCCHHHHHHHHHH
Confidence 1122222211110 00 119999999999874
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=3.8e-18 Score=157.63 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=77.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++. ..|+||+|++. ++
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~e~ 88 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKVGYLPQEPQLDPTKTVREN 88 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCCCCCCcHHHH
Confidence 455666654 58999999999999999999999999998 99988641 36899999864 33
Q ss_pred HHhcCCCC---------------CChHH----------------------HHHHHHHHHhhcCCchhhccccccCChHHH
Q 029723 141 VETGGCPH---------------AAIRE----------------------DISINLGPLEELSNLFKADLLLCESGGGNL 183 (189)
Q Consensus 141 i~~g~~~~---------------~~~~~----------------------d~~~v~~~L~~lgL~~~~~~~~~eLSGGqr 183 (189)
+.++.... ....+ ...++.++|+.+++.. .++++.+||||||
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqk 167 (552)
T TIGR03719 89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGER 167 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHH
Confidence 33321100 00000 1134566788888853 6889999999999
Q ss_pred HhhhcC
Q 029723 184 QTISFI 189 (189)
Q Consensus 184 q~~~~i 189 (189)
|||+|+
T Consensus 168 qrv~la 173 (552)
T TIGR03719 168 RRVALC 173 (552)
T ss_pred HHHHHH
Confidence 999874
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.73 E-value=3.9e-18 Score=134.96 Aligned_cols=86 Identities=24% Similarity=0.258 Sum_probs=64.1
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++. +.++|++|++.. ..
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~-------~~ 77 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYL-------PL 77 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCcc-------cc
Confidence 44556666 369999999999999999999999999998 99998752 479999998631 11
Q ss_pred CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 149 AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
....++ +.. . .+.+||+|||||++|+
T Consensus 78 ~tv~~n-------l~~-~-------~~~~LS~G~~~rv~la 103 (166)
T cd03223 78 GTLREQ-------LIY-P-------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ccHHHH-------hhc-c-------CCCCCCHHHHHHHHHH
Confidence 111111 111 0 5789999999999874
No 333
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=2.9e-18 Score=145.51 Aligned_cols=120 Identities=16% Similarity=0.043 Sum_probs=91.9
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH-------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------- 139 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~------- 139 (189)
.++..+++|.-+ |++++++|+|||||||+||+|+|++.|+ |.|.|+|.+.+. +..++.+.+++|+-....
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 457778888765 9999999999999999999999999999 999999999864 556677888887644320
Q ss_pred --HHHhc-CCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 --AVETG-GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 --~i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
-+... ........+-.++...+.+.|+|+..++.++..||-|||.|+.++
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLa 168 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELA 168 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHH
Confidence 00000 001112233456788888999999999999999999999998763
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.8e-18 Score=162.59 Aligned_cols=119 Identities=13% Similarity=-0.033 Sum_probs=79.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC----CCCchHHHhhhceeccchhHHHHHh-
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----FTKEDGEFLMRNGALPEERIRAVET- 143 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di----~~~~~~~~~~~iG~v~Q~~~~~i~~- 143 (189)
.+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+... ........+..++||+|.+.....+
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~ 95 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLE 95 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHH
Confidence 455666655 58999999999999999999999999998 9999887531 1101111123567777643311100
Q ss_pred -----cC--CC------------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 144 -----GG--CP------------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 -----g~--~~------------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
.. .. .........++.++|+.|++. ...++++.+|||||||||+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 96 AQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 00 00 000011235788899999996 467999999999999999974
No 335
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.2e-18 Score=135.78 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=88.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec-----CCCCCchHHHh----hhceeccchhH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN-----DIFTKEDGEFL----MRNGALPEERI 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~-----di~~~~~~~~~----~~iG~v~Q~~~ 138 (189)
+-..+++|.- +||+++|+|.+||||||||+||++.+.|+ |+|.+... ++......+++ ...|||-|+|.
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 3445667765 59999999999999999999999999999 99999874 44444444443 36899999997
Q ss_pred HHHHhcCCCCC-------C-----hHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHA-------A-----IREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~-------~-----~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.-+.+...... . +-.....+.++|+++.++. ..+..|..+|||||||+.|+
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA 163 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence 32221111100 0 1234556788999999974 67899999999999999764
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=6.4e-18 Score=160.75 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=79.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH------H--
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------A-- 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~------~-- 140 (189)
.+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+. ..|+|++|++.. +
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~igyv~Q~~~~~l~~~~~~~ 592 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRMAVFSQHHVDGLDLSSNPL 592 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeEEEEeccccccCCcchhHH
Confidence 455666664 58999999999999999999999999998 99987531 368999997531 1
Q ss_pred HHhc-CCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 141 VETG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g-~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+. .... ...+++.++|+.+++.. ..++++.+||||||||++|+
T Consensus 593 ~~~~~~~~~----~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLA 639 (718)
T PLN03073 593 LYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 639 (718)
T ss_pred HHHHHhcCC----CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHH
Confidence 1110 0011 12456788999999974 67899999999999999874
No 337
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.3e-18 Score=135.10 Aligned_cols=122 Identities=19% Similarity=0.156 Sum_probs=90.8
Q ss_pred CCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec----CCCCCchHH----Hhhhceeccchh
Q 029723 68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE----FLMRNGALPEER 137 (189)
Q Consensus 68 ~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~----di~~~~~~~----~~~~iG~v~Q~~ 137 (189)
+++...+++|+-+ |||++|-||+|||||||||+|.+-+.|+ |+|.+.-. |+...++.+ +++.||||.|..
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 3677788888876 7999999999999999999999999999 99998653 333444444 245799999974
Q ss_pred H-----HHHHhcCCC----CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 138 I-----RAVETGGCP----HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~-----~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
. ..++.-..+ .........++..+|.+|++.+ .....|.++||||||||.|+
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIa 164 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIA 164 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhh
Confidence 3 111111111 1222334567889999999976 67889999999999999874
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.73 E-value=7e-18 Score=170.78 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
.+..++++|.- +|+.++|+|++|||||||+++|+|++.++|+|.|+|.|+.+.+..++|++|+||||+|. +|
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 45667777765 48999999999999999999999999745999999999998888899999999999986 44
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-------c----ccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-------L----CESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-------~----~eLSGGqrq~~~~i 189 (189)
+.... ....+++.++|+.++|.+..... + ..|||||||+++|+
T Consensus 1312 Ldp~~------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1312 LDPYE------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred hCccc------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence 43211 11356777888888876533322 2 36999999999874
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=5.4e-18 Score=170.65 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=89.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++++.- +|++++|+|||||||||||++|+|+++ ++ |+|.++|.++. .++++.++||+|++.
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~T 852 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTST 852 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCC
Confidence 3455666654 589999999999999999999999987 67 99999999873 246678999999853
Q ss_pred --HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccc----cCChHHHHhhhcC
Q 029723 139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC----ESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~----eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..++++++|+.++|.+..++.+. +||||||||++|+
T Consensus 853 v~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 853 VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHH
Confidence 4454432111 1222334678899999999888888887 7999999999874
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.8e-18 Score=159.70 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=78.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhc--CC
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG--GC 146 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g--~~ 146 (189)
...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+.+. ..+||++|++...+... ..
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~ 395 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPL 395 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCCccchHH
Confidence 445556554 59999999999999999999999999998 99988631 25899999742111000 00
Q ss_pred ---CCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 147 ---PHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ---~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
...........+.++|+.|++.. ..++++.+|||||||||+|+
T Consensus 396 ~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 396 QHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred HHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 00011123456788999999963 67899999999999999974
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.72 E-value=9.8e-18 Score=158.14 Aligned_cols=109 Identities=17% Similarity=0.033 Sum_probs=80.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
....+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.+++ ++.++||+|++. ++
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence 3555666664 59999999999999999999999999998 9987642 347999999974 55
Q ss_pred HHhcCCCCC--ChHHHHHHHHHHHhhcCCchhhcccc---------ccCChHHHHhhhcC
Q 029723 141 VETGGCPHA--AIREDISINLGPLEELSNLFKADLLL---------CESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~--~~~~d~~~v~~~L~~lgL~~~~~~~~---------~eLSGGqrq~~~~i 189 (189)
+.++..... ......+++.++|+.+++.+..+++. .+||||||||++|+
T Consensus 535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 554421100 00012356778899999976655533 68999999999974
No 342
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.72 E-value=1.1e-17 Score=143.37 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=69.0
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++ .++|++|++. +++
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl 118 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENI 118 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHh
Confidence 45566666 469999999999999999999999999998 9999876 3788888864 222
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
.++.. .. ...+.++++.+++... .+..+.+||+|||||++|+
T Consensus 119 ~~~~~--~~----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 119 IFGVS--YD----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred hcccc--cC----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 22211 11 1122333444444322 2334679999999999874
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.71 E-value=9.3e-18 Score=137.81 Aligned_cols=107 Identities=11% Similarity=-0.065 Sum_probs=69.3
Q ss_pred ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-EeecCCCCCchHHHhhhceeccch--hHHHHHhcCC-
Q 029723 73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEE--RIRAVETGGC- 146 (189)
Q Consensus 73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-i~g~di~~~~~~~~~~~iG~v~Q~--~~~~i~~g~~- 146 (189)
++++|.- +|++++|+|||||||||||++|+|+++|+ |+|. +++..+. .. ... .++.. ..+++.+...
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~-~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANS-FILPGLTGEENARMMASL 76 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----ccc-ccCCcCcHHHHHHHHHHH
Confidence 4445544 58999999999999999999999999998 9997 6664431 10 111 12222 1244443211
Q ss_pred CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..... .+....+++.++|....++++.+||+|||||++|+
T Consensus 77 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la 116 (213)
T PRK15177 77 YGLDG---DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFA 116 (213)
T ss_pred cCCCH---HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHH
Confidence 11111 11122334556777778899999999999999874
No 344
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.71 E-value=1.5e-17 Score=152.78 Aligned_cols=113 Identities=15% Similarity=0.060 Sum_probs=79.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-HHHHHhcCC-
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC- 146 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~~~i~~g~~- 146 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.+.. +....++.++.. .+++.+...
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~------i~~~~~l~~~lTV~EnL~l~~~~ 112 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISSGLNGQLTGIENIELKGLM 112 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee------EEeccccCCCCcHHHHHHhhhhh
Confidence 456666664 69999999999999999999999999998 99999886521 000112222212 244433211
Q ss_pred CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 ~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
......+..+++.++|+.++|....++++.+||||||||++|+
T Consensus 113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHH
Confidence 1122223345677899999998888999999999999999874
No 345
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=2.8e-17 Score=165.90 Aligned_cols=117 Identities=12% Similarity=0.009 Sum_probs=87.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------- 138 (189)
...+++++.- +|++++|+|||||||||||++|+|+.++ . |+|.++|.++. ...+++.+|||+|++.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence 3455555554 5899999999999999999999999874 4 99999998753 2345677999999864
Q ss_pred -HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhcccc-----ccCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLL-----CESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~-----~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..++++++|+.++|....++++ ..|||||||||+|+
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa 1031 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHH
Confidence 4444432111 122233456889999999988778876 58999999999974
No 346
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.70 E-value=1.8e-17 Score=146.99 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=95.0
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccC------CccEEEeecCCCCCchHHHhh----hceeccchh
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM----RNGALPEER 137 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p------~G~I~i~g~di~~~~~~~~~~----~iG~v~Q~~ 137 (189)
..+.+.++|.-. ||+++|||.+|||||-..+.|+++++. +|+|.++|.|+...+..++++ +|+++||+|
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEP 102 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP 102 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccc
Confidence 345677777765 999999999999999999999999873 489999999998887777654 799999998
Q ss_pred H----------HHHHhcCCC--CCChHHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 138 I----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~----------~~i~~g~~~--~~~~~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
. .++.-.... .+..+..+.++.++|+.++|.+ .++.+|.+|||||||||.|+
T Consensus 103 MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIA 169 (534)
T COG4172 103 MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIA 169 (534)
T ss_pred ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHH
Confidence 6 111111111 2233456778999999999964 57899999999999999864
No 347
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=9e-18 Score=135.18 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=88.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCC----ChHHH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA----AIRED 154 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~----~~~~d 154 (189)
..||++-+||||||||||||..++|+++.+|+|.+.|.++......++.|.-+|+.|+..-...+..+.++ .-++.
T Consensus 23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~ 102 (248)
T COG4138 23 RAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTR 102 (248)
T ss_pred ccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHH
Confidence 35999999999999999999999999998899999999998888888888889998764411111111122 22345
Q ss_pred HHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 155 ISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 155 ~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
...+.++...++|.+++.+.+..|||||-|||-+
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence 5678888999999999999999999999999854
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=1.5e-17 Score=133.81 Aligned_cols=49 Identities=24% Similarity=0.137 Sum_probs=42.6
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
-.++|++++|+|||||||||||++|+|+++|+ |+|.+++.+ ++|++|++
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~~ 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQYI 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcccC
Confidence 33579999999999999999999999999998 999998742 67888753
No 349
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.9e-17 Score=149.77 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=86.8
Q ss_pred CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723 65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
|..+.+...+++|... |++++||||+|+||||+||+|.++..-+ |.|.|+|+||.......+|+.||+|||+..
T Consensus 547 Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 3445566777777764 8999999999999999999999999877 999999999987777888999999999975
Q ss_pred ---HHHHhcCCCCCChHHHHH--HHHHHH-hhcCCchhhccccc----cCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPHAAIREDIS--INLGPL-EELSNLFKADLLLC----ESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~~~~~~d~~--~v~~~L-~~lgL~~~~~~~~~----eLSGGqrq~~~~i 189 (189)
.|+.++... ..-++..+ ++..+= ..+++.+..+.++. .||||||||||++
T Consensus 627 TI~yNIryak~~-AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 627 TILYNIRYAKPS-ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred eeeeheeecCCC-CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 344443221 11111111 111111 11344444444444 5999999999974
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=2.7e-17 Score=128.32 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=54.3
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q 135 (189)
...+.+|. .+|++++|+|+|||||||||++|+|+++|+ |+|.+++.++......++.+.++|++|
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 44455555 468999999999999999999999999998 999999988765445566678999988
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=1.9e-17 Score=166.70 Aligned_cols=119 Identities=8% Similarity=-0.079 Sum_probs=84.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc----cCC-ccEEEeecCCCCCchHHHhhhceeccchhH-----
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll----~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~----- 138 (189)
...+++++.- +|++++|+||||||||||||+|+|++ +|. |+|.++|.++.... ..+++.++|++|+..
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence 3455555554 59999999999999999999999986 456 99999998874322 234567999999854
Q ss_pred ---HHHHhcCCCC--------CChHHHHHH-HHHHHhhcCCchhhccc-----cccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPH--------AAIREDISI-NLGPLEELSNLFKADLL-----LCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~--------~~~~~d~~~-v~~~L~~lgL~~~~~~~-----~~eLSGGqrq~~~~i 189 (189)
+++.+..... ....+..++ ++.+|+.++|....+++ +..|||||||||+|+
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA 221 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence 4554432211 111222223 45689999998766554 567999999999974
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.68 E-value=5.6e-17 Score=130.29 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=67.7
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~ 147 (189)
..+..+++|.-+ |++++|+|||||||||||++|.+ ..|++.+++... .. .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~~----~~~~~~~~~q------------ 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-KF----SRNKLIFIDQ------------ 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-cc----ccccEEEEhH------------
Confidence 344566666655 89999999999999999999853 349998876521 11 1235777766
Q ss_pred CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 148 HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 148 ~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++|+.++|.. ..++++.+||+|||||++|+
T Consensus 68 -----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la 99 (176)
T cd03238 68 -----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA 99 (176)
T ss_pred -----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence 35788889875 37889999999999999874
No 353
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.66 E-value=9e-17 Score=155.96 Aligned_cols=119 Identities=19% Similarity=0.075 Sum_probs=95.1
Q ss_pred CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhcCC-
Q 029723 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGC- 146 (189)
Q Consensus 71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g~~- 146 (189)
+.++++|.-+ |||+|++|+|||||||++++|+|..+|+ |++.+.|.++..... .+.++.+||+||.......+..+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 6667777765 8999999999999999999999999999 999999999965433 34678999999986522222222
Q ss_pred --------CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 --------PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 --------~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+......+.+..+|+.++|.+.++++++.+|||+|+|++|+
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFA 710 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHH
Confidence 2222234456688999999999999999999999999999874
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.66 E-value=5.1e-17 Score=152.62 Aligned_cols=117 Identities=15% Similarity=0.036 Sum_probs=75.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC-CCCchHHHhhhceeccchhH---------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALPEERI--------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di-~~~~~~~~~~~iG~v~Q~~~--------- 138 (189)
.+.+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++... ...........+++++|...
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~ 97 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEY 97 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHH
Confidence 556666664 59999999999999999999999999998 9999876321 00000001123444544321
Q ss_pred ----HHHHh--cCC----------------CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVET--GGC----------------PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~--g~~----------------~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+.. ... ..........++.++|+.|++. .++++.+|||||||||+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LA 168 (635)
T PRK11147 98 LKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALG 168 (635)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHH
Confidence 00000 000 0000001245678899999997 3889999999999999974
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=1.7e-16 Score=148.81 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=90.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC---C-ccEEEeecCCCCCchHHHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p---~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------- 138 (189)
..+++.... +||+++|+||+||||||||++|+|.... . |+|.+||+.. ..+.+++.+|||.|+..
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhhhhheeEEEcccccccccccH
Confidence 445555544 5999999999999999999999999864 3 9999999544 45567788999999865
Q ss_pred -HHHHhcCCCC----CChHHHHHHHHHHHhhcCCchhhccccc-----cCChHHHHhhhcC
Q 029723 139 -RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC-----ESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~~----~~~~~d~~~v~~~L~~lgL~~~~~~~~~-----eLSGGqrq~~~~i 189 (189)
+.+.+..... +...+..+++++++++|+|....+..+. .+|||||+||+|+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 3333332222 2335667899999999999988888886 4999999999974
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=1.8e-16 Score=146.18 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=72.6
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPH 148 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~ 148 (189)
..+|++|||||+|||||||||++|+|.+.|+ |+|.+... + +++|+.|++. ..+..+....
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-~----------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~ 94 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-L----------RVGYLSQEPPLDPEKTVLDYVIEGFGEL 94 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-c----------eEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence 3369999999999999999999999999998 99977643 1 4778777764 1111111100
Q ss_pred CCh-------------------------------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 149 AAI-------------------------------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~~~-------------------------------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
... .+...++..+|..|++... ++++.+||||||.||+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA 165 (530)
T COG0488 95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALA 165 (530)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHH
Confidence 000 0112467788888999866 999999999999999874
No 357
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.65 E-value=1.3e-16 Score=123.67 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=45.9
Q ss_pred CcccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723 71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q 135 (189)
...+++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+++. +.++|++|
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~ 70 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ 70 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc
Confidence 44555665 369999999999999999999999999998 99999873 36889888
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=1.3e-16 Score=161.03 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=83.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------ 138 (189)
...+++++.- +|++++|+|||||||||||++|+|+++| +|+|.++|.++.... .++.++||+|+..
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcCc
Confidence 3455666554 5999999999999999999999999987 499999998874322 2567999999853
Q ss_pred --HHHHhcCCCC-----------CChHHH------------------------HHHHHHHHhhcCCchhh-----ccccc
Q 029723 139 --RAVETGGCPH-----------AAIRED------------------------ISINLGPLEELSNLFKA-----DLLLC 176 (189)
Q Consensus 139 --~~i~~g~~~~-----------~~~~~d------------------------~~~v~~~L~~lgL~~~~-----~~~~~ 176 (189)
+++.+...+. ...++. ...++.+|+.++|.... +..+.
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 4554432211 000110 01346789999997543 56778
Q ss_pred cCChHHHHhhhcC
Q 029723 177 ESGGGNLQTISFI 189 (189)
Q Consensus 177 eLSGGqrq~~~~i 189 (189)
.|||||||||+|+
T Consensus 336 glSGGerkRVsia 348 (1470)
T PLN03140 336 GISGGQKKRVTTG 348 (1470)
T ss_pred CCCcccceeeeeh
Confidence 9999999999874
No 359
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=1.2e-16 Score=130.04 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC----------ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~----------G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~ 149 (189)
+| +++|+|||||||||||++|++++.+. +.+.+.+.++.. ....+.++++||++..+ ++.
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~---- 91 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSI---- 91 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeE----
Confidence 46 99999999999999999999998553 356666666532 12346899999998644 111
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. ...++.++++. ....++.+.+||+||||+++|+
T Consensus 92 ~---~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la 125 (197)
T cd03278 92 I---SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALA 125 (197)
T ss_pred E---ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHH
Confidence 0 13466777777 3456889999999999999874
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.5e-16 Score=137.09 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=86.0
Q ss_pred CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723 65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
|..+.+..++.+|.-+ |+.++|+|++|+||||++++|.+++.++ |.|.++++|+.......+++.||.|||+..
T Consensus 272 y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred ccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 3445556666666665 8999999999999999999999999998 999999999987777788999999999975
Q ss_pred ---HHHHhcCCCCCChHHH-----HHHHHHHHhhcCCchhhccccc----cCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPHAAIRED-----ISINLGPLEELSNLFKADLLLC----ESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~~~~~~d-----~~~v~~~L~~lgL~~~~~~~~~----eLSGGqrq~~~~i 189 (189)
.++.++... ..-.+. ...+...++.+ ++..+..+. .|||||||||+++
T Consensus 352 ti~yni~ygr~~-at~eev~aaa~~aqi~~fi~~l--P~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 352 TIAYNIKYGRPD-ATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred hHHHHHhccCcc-ccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheeeccCchHHHHHHH
Confidence 334444322 211111 11122223332 233344444 5999999999974
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=6.4e-16 Score=156.65 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++| .|+|++|++. +|
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence 3456666654 59999999999999999999999999998 9999876 3899999874 66
Q ss_pred HHhcCCCCCC-hHHHH--HHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAA-IREDI--SINLGPLEELSNL--FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~-~~~d~--~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++...... ..+.. ..+.+.|+.+... ........+||||||||++|+
T Consensus 507 I~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 507 IIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred HHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 6665321100 00000 0112223333211 123456789999999999974
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=1.3e-15 Score=145.14 Aligned_cols=119 Identities=17% Similarity=0.096 Sum_probs=78.6
Q ss_pred CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc---cCC-ccEEEeecCCCCCc--h--------H----HHhhhce
Q 029723 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTKE--D--------G----EFLMRNG 131 (189)
Q Consensus 71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll---~p~-G~I~i~g~di~~~~--~--------~----~~~~~iG 131 (189)
.+.+++|.-. |+++||||+|||||||||++|+|+. .|+ |+|.+.++++.... . . .+++.++
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~ 271 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ 271 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence 5666666654 8999999999999999999999863 456 99988776542111 1 0 0133578
Q ss_pred eccchhHHHHHh------cCC-CCCChH-------------------HHHHHHHHHHhhcCCc-hhhccccccCChHHHH
Q 029723 132 ALPEERIRAVET------GGC-PHAAIR-------------------EDISINLGPLEELSNL-FKADLLLCESGGGNLQ 184 (189)
Q Consensus 132 ~v~Q~~~~~i~~------g~~-~~~~~~-------------------~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq 184 (189)
+++|.+...... ... ...... ....++.++|..|++. ...++++.+|||||||
T Consensus 272 ~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~ 351 (718)
T PLN03073 272 LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM 351 (718)
T ss_pred HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH
Confidence 888865422110 000 000000 1234567788888986 4578899999999999
Q ss_pred hhhcC
Q 029723 185 TISFI 189 (189)
Q Consensus 185 ~~~~i 189 (189)
||+|+
T Consensus 352 rv~LA 356 (718)
T PLN03073 352 RIALA 356 (718)
T ss_pred HHHHH
Confidence 99974
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.60 E-value=8.8e-16 Score=155.70 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=75.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.- +|++++|+||+||||||||++|+|+++|. |.+. .+++.|+||+|+|. +|
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreN 698 (1495)
T PLN03232 631 PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVREN 698 (1495)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHH
Confidence 3456666655 59999999999999999999999999998 8764 13457999999986 77
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
+.++.. . +.+++.++++.++|.+... ..-..||||||||++|+
T Consensus 699 I~fg~~--~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 699 ILFGSD--F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred hhcCCc--c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 777642 1 3455666666666643222 22346999999999974
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.59 E-value=1.2e-15 Score=155.03 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++ .|+||+|++. +|
T Consensus 652 ~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eN 718 (1522)
T TIGR00957 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLREN 718 (1522)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHH
Confidence 4556666654 59999999999999999999999999998 9999875 4899999975 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCC-----------chhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSN-----------LFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL-----------~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.. . +.++..++++.+.+ .........+||||||||++|+
T Consensus 719 I~~g~~--~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 719 ILFGKA--L----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred hhcCCc--c----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 655532 1 11222222222222 1234566789999999999974
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.59 E-value=1.9e-15 Score=153.63 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=74.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+. +.|+|++|++. +++
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNI 741 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHH
Confidence 455556654 59999999999999999999999999998 999752 36999999874 455
Q ss_pred HhcCCCCC-ChHHH--HHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHA-AIRED--ISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~-~~~~d--~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++..... .+.+. ...+.+.++.+ ++....+.+..+||||||||++|+
T Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLA 794 (1560)
T PTZ00243 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794 (1560)
T ss_pred HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHH
Confidence 54321100 00000 01223344555 565566788999999999999974
No 366
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.1e-15 Score=131.90 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=81.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh-cCCCCCChHHHHHH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISI 157 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~-g~~~~~~~~~d~~~ 157 (189)
+||++-|+|.||||||||+++|+|+++|+ |+|.++|+++...+..+.|+-+..||.+.-.+-.+ +..... ..+.
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~a----s~q~ 423 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKA----SPQL 423 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCC----ChHH
Confidence 69999999999999999999999999999 99999999998888888888899988876533222 222212 3456
Q ss_pred HHHHHhhcCCchh---hcc--ccccCChHHHHhhhcC
Q 029723 158 NLGPLEELSNLFK---ADL--LLCESGGGNLQTISFI 189 (189)
Q Consensus 158 v~~~L~~lgL~~~---~~~--~~~eLSGGqrq~~~~i 189 (189)
+...|+++.|... .+. ..-.||.|||+|+|++
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 6777777776542 233 3447999999999863
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=5.7e-15 Score=136.27 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=80.9
Q ss_pred CCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH-Hh
Q 029723 67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ET 143 (189)
Q Consensus 67 ~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i-~~ 143 (189)
+......+++|.- +|+.++||||||+|||||||+|+|.+.|. |+|.+... + ++||+.|+..... ..
T Consensus 333 ~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~igyf~Q~~~~l~~~~ 401 (530)
T COG0488 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KIGYFDQHRDELDPDK 401 (530)
T ss_pred CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EEEEEEehhhhcCccC
Confidence 3345556677766 58999999999999999999999999998 98876543 3 5899999864221 00
Q ss_pred cCCCCCC--h-HHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 144 GGCPHAA--I-REDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~~~~~--~-~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.....+. . ......+...|..|++.. ...+++..||||||.|+.|+
T Consensus 402 t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 402 TVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred cHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 0000000 0 012567888999999974 56889999999999999874
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.56 E-value=3.6e-15 Score=152.12 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
+...+++|.- +|++++|+||+||||||||++|+|.++|. |+|.+ +..|+||+|+|. +
T Consensus 631 ~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIre 697 (1622)
T PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRD 697 (1622)
T ss_pred ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHH
Confidence 3455666654 59999999999999999999999999985 67763 347999999985 7
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
|+.++.. . +.+++.++++.++|.+.. ...-..||||||||++|+
T Consensus 698 NI~fg~~--~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLA 752 (1622)
T PLN03130 698 NILFGSP--F----DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752 (1622)
T ss_pred HHhCCCc--c----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHH
Confidence 7777642 1 455666677766664322 223446999999999974
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=1.3e-14 Score=144.39 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=93.1
Q ss_pred CCCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH
Q 029723 64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (189)
Q Consensus 64 ~~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i 141 (189)
|.+.-.+...+++|.-+ ||.+||||..|||||||+++|-++..|. |.|.|||.||.+....++|++++.+||+|..+-
T Consensus 1148 Yrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs 1227 (1381)
T KOG0054|consen 1148 YRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS 1227 (1381)
T ss_pred eCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec
Confidence 44444566677887776 6999999999999999999999999988 999999999999999999999999999997321
Q ss_pred HhcCCCCCCh--HHHHHHHHHHHhhcCCchhh-------cccc----ccCChHHHHhhhc
Q 029723 142 ETGGCPHAAI--REDISINLGPLEELSNLFKA-------DLLL----CESGGGNLQTISF 188 (189)
Q Consensus 142 ~~g~~~~~~~--~~d~~~v~~~L~~lgL~~~~-------~~~~----~eLSGGqrq~~~~ 188 (189)
-+- +.+++. +-..+++-++|+++.|.+.. +..+ .++|-||||.+.+
T Consensus 1228 GTv-R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1228 GTV-RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCL 1286 (1381)
T ss_pred Ccc-ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHH
Confidence 111 112211 11345677777777765433 2223 4699999999876
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=1.7e-14 Score=143.53 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=81.0
Q ss_pred CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
...+++|.-+ |+.++|+|+.|||||+||.+|+|.++.. |+|.++|. ++|++|.|- +||
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNI 602 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENI 602 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhh
Confidence 5667777654 9999999999999999999999999987 99999875 799999985 777
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
.+|... |+++.+++++.+.|+...+. +-.+||||||||++++
T Consensus 603 LFG~~~------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 603 LFGSPY------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred hcCccc------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 777432 67778888887777654443 3458999999999974
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.53 E-value=4.4e-15 Score=123.17 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc----------------ccCC-c--------cEEEeecCCC-CC--chHHHhhhcee
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF----------------LRDK-Y--------SLAAVTNDIF-TK--EDGEFLMRNGA 132 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl----------------l~p~-G--------~I~i~g~di~-~~--~~~~~~~~iG~ 132 (189)
+++++|+|||||||||||++|+++ +.+. | +|.+++.+.. .. ....+++.+++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~ 102 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGL 102 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEEC
Confidence 789999999999999999999843 4444 4 4445443221 10 11234556788
Q ss_pred ccchhHHHHHhcCCCCCChHHHHHHHHHHHhh--------------------cCCchhhccccccCChHHHHhhhcC
Q 029723 133 LPEERIRAVETGGCPHAAIREDISINLGPLEE--------------------LSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 133 v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L~~--------------------lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++|++..+ . ... ....+..++.. +++....+.++.+||+|||||++|+
T Consensus 103 ~~~~~~l~----~-~~~----t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la 170 (243)
T cd03272 103 KKDEYFLD----K-KNV----TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA 170 (243)
T ss_pred CCCEEEEC----C-eEc----CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence 77653210 0 000 01112222222 2333345678999999999999874
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=4.8e-15 Score=124.22 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=74.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeec-CCCCCc--hHHHhhhceeccchhHH----------------
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTKE--DGEFLMRNGALPEERIR---------------- 139 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~-di~~~~--~~~~~~~iG~v~Q~~~~---------------- 139 (189)
..+++|||||||||||||++|++++.+. +++.+.+. ++.... .......++++||++..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5689999999999999999999999875 57777665 332111 11223478999998521
Q ss_pred -HHHhcCCC-C-CC-hHHHHHHHHHHHhhcCCc--------------------hhhccccccCChHHHHhhhcC
Q 029723 140 -AVETGGCP-H-AA-IREDISINLGPLEELSNL--------------------FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 -~i~~g~~~-~-~~-~~~d~~~v~~~L~~lgL~--------------------~~~~~~~~eLSGGqrq~~~~i 189 (189)
++..+... . .. .....+++.++|+.++|. ...+.++.+||+||||+++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 11122111 1 11 122346788899999986 345678999999999999874
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.49 E-value=5.9e-15 Score=121.00 Aligned_cols=112 Identities=14% Similarity=-0.056 Sum_probs=67.9
Q ss_pred ccCcccC--CCcEEEEEcCCCchHHHHHHHHHhcc-cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723 73 LSRNFNE--RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 73 ~~~~f~~--~GeivgLiGpNGSGKTTLL~~L~Gll-~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
+.++|.. +|++++|+|||||||||||++|++.+ .+. +..... .........+....|+++||.+...........
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~g 96 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRG 96 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecC
Confidence 4555653 37899999999999999999999654 232 333322 111111122334578999988642211111112
Q ss_pred CChHHHHHHHHH--HHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 149 AAIREDISINLG--PLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~~~~~d~~~v~~--~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+. ...+.+ .+...++....++++.+||+||+|+++|+
T Consensus 97 l~----~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la 135 (213)
T cd03279 97 LD----YDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLS 135 (213)
T ss_pred CC----HHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHH
Confidence 21 112211 24555566778999999999999999874
No 374
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.45 E-value=6.7e-14 Score=125.93 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=67.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAA 150 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~~ 150 (189)
..||+++++||||-|||||+++|+|.++|+ |. ..++ ++.|-||... +.+........
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~~- 429 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRSA- 429 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhhh-
Confidence 368999999999999999999999999998 86 2222 3445444321 22222111100
Q ss_pred hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 151 IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 151 ~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+.....++++-|.|+...++++.+|||||.|||||+
T Consensus 430 -~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIa 467 (591)
T COG1245 430 -FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA 467 (591)
T ss_pred -cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHH
Confidence 00222345788899999999999999999999999974
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.45 E-value=7e-14 Score=115.84 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 159 LGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 159 ~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++|+.++|.. ..++++.+||||||||++|+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 149 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA 149 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence 56899999986 47999999999999999874
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.44 E-value=7.2e-14 Score=127.48 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=78.5
Q ss_pred CCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH---
Q 029723 66 SRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA--- 140 (189)
Q Consensus 66 ~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~--- 140 (189)
++.....++++|... ++.++|||||||||||||++++|.+.|+ |.|.-..... +++.-|...+.
T Consensus 400 ~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------LPRYNQHLAEQLDL 468 (614)
T ss_pred CCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------chhhhhhhHhhcCc
Confidence 444467778888765 7999999999999999999999999998 9886544433 22222222211
Q ss_pred ----HHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 141 ----VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 ----i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++....... ....+.+..+|.++||. +..+.++.+||.|||+||.|+
T Consensus 469 ~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 469 DKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA 521 (614)
T ss_pred chhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence 1111111110 12456788899999998 567889999999999999984
No 377
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.43 E-value=1.2e-13 Score=118.80 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=87.2
Q ss_pred CCCcccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCC
Q 029723 69 APPILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147 (189)
Q Consensus 69 ~~~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~ 147 (189)
.|..||..|.++| .+++|+|+|||||||||+.|++.+++...+.+...|+.+.++.++.+..|. +..++..|..|
T Consensus 91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi~tG~~C 166 (290)
T PRK10463 91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQVNTGKGC 166 (290)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEecCCCCC
Confidence 6777999998875 999999999999999999999998877667777778877777676666664 45566778778
Q ss_pred CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 148 ~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
++ +..++.++|+.|.+. ..+..+.|.+|...+++.|
T Consensus 167 hl----~a~mv~~Al~~L~~~-~~d~liIEnvGnLvcPa~f 202 (290)
T PRK10463 167 HL----DAQMIADAAPRLPLD-DNGILFIENVGNLVCPASF 202 (290)
T ss_pred cC----cHHHHHHHHHHHhhc-CCcEEEEECCCCccCCCcc
Confidence 77 567778888888765 4578889999876676653
No 378
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=5.7e-13 Score=131.29 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=93.0
Q ss_pred CCCCCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC---CccEEEeecCCCCCchHHHhhhceeccchhH----
Q 029723 66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 66 ~~~~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---- 138 (189)
..|.+..|-.-+..+|-.++|+|+|||||||||++|+|.... +|+|.|+|.+.. ...++|.+|||-|+..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCcc
Confidence 445566666667778999999999999999999999998653 399999998763 3578899999999865
Q ss_pred ----HHHHhcCC---C-CCChHHHHHHHHHHHhhcCCchhhcccccc----CChHHHHhhhcC
Q 029723 139 ----RAVETGGC---P-HAAIREDISINLGPLEELSNLFKADLLLCE----SGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~---~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e----LSGGqrq~~~~i 189 (189)
+-+.+... + .....+..+.++++++.|+|+...+..+.. ||..||+|+.|.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEE
Confidence 22322211 1 122234447899999999999888888888 999999999873
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=9e-13 Score=122.53 Aligned_cols=106 Identities=21% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++.+|.- +|+.+.|.|+||||||||+|+|+|+.+-- |+|.+-. + ..+-|+||.|. +.
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-~----------~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-D----------SALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-C----------CceEEecCCCCCCCccHHHH
Confidence 3445555554 59999999999999999999999998865 8775431 0 14678888875 33
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc------cccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL------LCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~------~~eLSGGqrq~~~~i 189 (189)
+.+..... .-..+.+.++|.+++|.+..++. -..||+|||||++|+
T Consensus 476 l~YP~~~~---~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 476 LCYPNAAP---DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred HhCCCCCC---CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 33322221 11456778899999998654443 346999999999985
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.29 E-value=4.2e-12 Score=114.44 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=70.0
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------------
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------------- 138 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------------- 138 (189)
++-...+|.++||+|+||-||||.|++|+|.+.|. |+.. + +. ..+.-+.+--|--.|+..
T Consensus 93 ~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~-pp--~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~ 167 (591)
T COG1245 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--D-PP--SWDEVIKRFRGTELQNYFKKLYEGELRAVHKP 167 (591)
T ss_pred cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--C-CC--CHHHHHHHhhhhHHHHHHHHHHcCCcceecch
Confidence 44455579999999999999999999999999998 8542 1 11 011111111222222222
Q ss_pred HHHHhc-CCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETG-GCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g-~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++..- ....-... ....+.+++++.|+|....++.+.+|||||.||+||+
T Consensus 168 QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIa 225 (591)
T COG1245 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIA 225 (591)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHH
Confidence 111110 00000011 1123567889999999999999999999999999974
No 381
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.27 E-value=8.3e-12 Score=114.08 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=91.0
Q ss_pred cccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH----------
Q 029723 72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------- 138 (189)
Q Consensus 72 ~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~---------- 138 (189)
..+++|.-+ |||+||.|--|||+|-|+++|.|+.++. |+|.++|+++...++. .++..|+||+.++.
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 346667665 9999999999999999999999988887 9999999988766655 45668999998874
Q ss_pred -HHHHhcCCC------CCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhc
Q 029723 139 -RAVETGGCP------HAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 -~~i~~g~~~------~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~ 188 (189)
+|+.+.... .+..+.....+.++.+.|.+.. ..+..+.+||||+||+|.|
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHH
Confidence 344333111 1223445567888899999864 5678999999999999976
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=1.8e-13 Score=112.60 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=55.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHH--------H-hcCC------
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV--------E-TGGC------ 146 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i--------~-~g~~------ 146 (189)
++++|+|||||||||||++|+-. .|.++. ..+.+++++++|+..... . +...
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~---------~G~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV---------FGFRAS----KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLL 92 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH---------hccCHH----HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHH
Confidence 79999999999999999999832 122210 011234666655532000 0 0000
Q ss_pred --CCCChHHHHH---HHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 147 --PHAAIREDIS---INLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 147 --~~~~~~~d~~---~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..... .... +..++++.++|.+..++++..||+|||||++|+
T Consensus 93 ~~~g~~~-~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la 139 (212)
T cd03274 93 KSKGIDL-DHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLA 139 (212)
T ss_pred HHCCcCC-CCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHH
Confidence 00000 0000 124566777887778889999999999999874
No 383
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.24 E-value=1e-11 Score=105.62 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.++|+.++|.. .+++++.+|||||+||++|+
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LA 181 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA 181 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHH
Confidence 45677899999987 57999999999999999874
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=7.9e-12 Score=112.65 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=81.8
Q ss_pred CCCCCCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHH
Q 029723 65 FSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142 (189)
Q Consensus 65 ~~~~~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~ 142 (189)
|++..+.+.+++|-.. -..|+||||||.||||||++|+|-+.|+ |+..-+ .+-+||+.-|..++.+.
T Consensus 596 y~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG~FdQh~~E~L~ 664 (807)
T KOG0066|consen 596 YPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIGWFDQHANEALN 664 (807)
T ss_pred CCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeeechhhhhHHhhc
Confidence 4566778888888776 5789999999999999999999999998 866432 12368888887664432
Q ss_pred hcCCC--CC--ChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 143 TGGCP--HA--AIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 143 ~g~~~--~~--~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
.-..+ ++ .+....+.++..|-.+||... -...+..|||||+.||+|+
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 21110 00 001134567788999999754 3567999999999999974
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.24 E-value=2.4e-12 Score=105.23 Aligned_cols=100 Identities=17% Similarity=0.005 Sum_probs=58.1
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHH----hcccCC-ccEEEeecCCCCCchHHHhhhceeccchh-HHHHHh--
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVET-- 143 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~----Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~-~~~i~~-- 143 (189)
...+.|.. | +++|+|||||||||||++|+ |...|+ +.+..+...+.. .+....++++||++ ...+..
T Consensus 15 ~~~l~~~~-g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 15 RSEIEFFS-P-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred ceEEecCC-C-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEE
Confidence 33455653 3 99999999999999999995 777776 655422211111 12345789999987 211100
Q ss_pred --cCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhh
Q 029723 144 --GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTI 186 (189)
Q Consensus 144 --g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~ 186 (189)
.....+... ....+. ...++.+.+||+||+|++
T Consensus 90 ~~~~~~~~~~~-~~~~~~---------~~~~~~~~~LS~G~~~~~ 124 (204)
T cd03240 90 SLAILENVIFC-HQGESN---------WPLLDMRGRCSGGEKVLA 124 (204)
T ss_pred EhhHhhceeee-chHHHH---------HHHhcCccccCccHHHHH
Confidence 000000000 011122 223788999999999974
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.18 E-value=5.8e-11 Score=107.59 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC-CCCchHHHh-hhceeccchhH-------
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFL-MRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di-~~~~~~~~~-~~iG~v~Q~~~------- 138 (189)
....+++|+-+ |||+||.|-.|-|-+.|+.+|+|+.++. |+|.++|.++ ...+..+++ ..++|||+++.
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 44566788776 8999999999999999999999999876 9999999997 455666554 48999999984
Q ss_pred ----HHHHhcCCC--------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhc
Q 029723 139 ----RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 ----~~i~~g~~~--------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~ 188 (189)
+|+.++... .+.+.+....+.++++++++. .....++..||||++|++-+
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 343333221 233455667788999999997 35677899999999999865
No 387
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.18 E-value=2.2e-11 Score=112.12 Aligned_cols=109 Identities=18% Similarity=0.066 Sum_probs=69.0
Q ss_pred ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHh
Q 029723 73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVET 143 (189)
Q Consensus 73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~ 143 (189)
.+++|.- +|.-+.|.||||||||+|||+|.|+.+-. |.+..-...- + +.+-||||.|. +++-+
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~----~~lfflPQrPYmt~GTLRdQvIY 523 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P----KDLFFLPQRPYMTLGTLRDQVIY 523 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C----CceEEecCCCCccccchhheeec
Confidence 3445544 58999999999999999999999998866 8776433211 1 34789999986 22211
Q ss_pred cCC--CCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 144 GGC--PHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 144 g~~--~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
... .......+.+++.+.|+.+.|..... .-...||+|||||++|+
T Consensus 524 P~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A 582 (659)
T KOG0060|consen 524 PLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA 582 (659)
T ss_pred cCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence 110 00001113345566666665543222 22457999999999985
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.18 E-value=1.1e-11 Score=103.72 Aligned_cols=34 Identities=35% Similarity=0.383 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~ 114 (189)
..+++|+|||||||||||.+|++++.+. +++...
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 3589999999999999999999999876 766544
No 389
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.15 E-value=2.8e-11 Score=90.03 Aligned_cols=60 Identities=27% Similarity=0.181 Sum_probs=48.4
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccch
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~ 136 (189)
...++|.- +|++++|+|||||||||||++++ .|++.+++.|+......++.+.+++++|+
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~ 65 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL 65 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence 34455544 47999999999999999999986 78899999999776666666777788776
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.15 E-value=3e-11 Score=98.45 Aligned_cols=97 Identities=18% Similarity=0.015 Sum_probs=57.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeec---CCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHH
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN---DIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~---di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v 158 (189)
.+.+|+|||||||||||.+|+-.+..+-.....+. ++.... .....|.++||+..... .........++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~------~~~~~~~~~~~ 93 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA------NPLCVLSQDMA 93 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC------CcCCHHHHHHH
Confidence 48899999999999999999865443311111121 110000 01234666666533111 11111123567
Q ss_pred HHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 159 LGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 159 ~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++|+. ....++++.+||+||||+++|+
T Consensus 94 ~~~l~~---~~~~~~~~~~lS~G~k~r~~ia 121 (198)
T cd03276 94 RSFLTS---NKAAVRDVKTLSGGERSFSTVC 121 (198)
T ss_pred HHHhcc---ccccCCcccccChhHHHHHHHH
Confidence 777776 4567889999999999999873
No 391
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.08 E-value=2.5e-10 Score=93.19 Aligned_cols=98 Identities=57% Similarity=0.971 Sum_probs=67.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L 162 (189)
.++|+|++|||||||++.|++.+++...+.+...++....+.++.+..++++|+....+..+.+++...+.+..+....|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999998877557788888877666777778898888765555555565544333333333333
Q ss_pred hhcC-CchhhccccccCCh
Q 029723 163 EELS-NLFKADLLLCESGG 180 (189)
Q Consensus 163 ~~lg-L~~~~~~~~~eLSG 180 (189)
..+- .....|..+.|.||
T Consensus 83 ~~l~~~~~~~D~iiIEt~G 101 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGG 101 (199)
T ss_pred HHHHhcCCCCCEEEEECCC
Confidence 3331 11135666777777
No 392
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.07 E-value=1.1e-10 Score=106.98 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=62.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCC
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
..++..|.- +|--+.|+||||||||+|+|+|.|+.+-. |... .-. ..+|-|+||.|.-- .|..+.
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~-~P~----------~~~mFYIPQRPYms--~gtlRD 563 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS-IPR----------PNNIFYIPQRPYMS--GGTLRD 563 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee-cCC----------CcceEeccCCCccC--cCcccc
Confidence 344555554 48888999999999999999999998754 4332 211 12488999988511 111110
Q ss_pred C----ChHHH-------HHHHHHHHhhcCCchhhcc---------ccccCChHHHHhhhcC
Q 029723 149 A----AIRED-------ISINLGPLEELSNLFKADL---------LLCESGGGNLQTISFI 189 (189)
Q Consensus 149 ~----~~~~d-------~~~v~~~L~~lgL~~~~~~---------~~~eLSGGqrq~~~~i 189 (189)
. ...++ .+....+|..+.|+..+.+ --..||||||||++++
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mA 624 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMA 624 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHH
Confidence 0 00000 1223444554444432222 2247999999999874
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=9.9e-11 Score=97.22 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=89.1
Q ss_pred CCCCCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-----ccEEEeecCCCCCchHHHhh----hceeccc
Q 029723 66 SRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFLM----RNGALPE 135 (189)
Q Consensus 66 ~~~~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-----G~I~i~g~di~~~~~~~~~~----~iG~v~Q 135 (189)
++++.+..++++.- +||+-||||.+|||||-..++|||..+.. -+..+++.++..+.+.++++ .|.++||
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 45555666666554 59999999999999999999999998753 45667788887888877765 5779999
Q ss_pred hhH-----------HHHH-hcCCCCC-Ch----HHHHHHHHHHHhhcCCch---hhccccccCChHHHHhhhcC
Q 029723 136 ERI-----------RAVE-TGGCPHA-AI----REDISINLGPLEELSNLF---KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 136 ~~~-----------~~i~-~g~~~~~-~~----~~d~~~v~~~L~~lgL~~---~~~~~~~eLSGGqrq~~~~i 189 (189)
+|. +.+. ....-+. .+ .-.+.++.++|.++|+.+ ....++.||.-||-|+|.|+
T Consensus 97 eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA 170 (330)
T COG4170 97 EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIA 170 (330)
T ss_pred CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeee
Confidence 986 1111 1000000 00 113567889999999975 45678999999999998764
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.02 E-value=3.6e-10 Score=103.53 Aligned_cols=124 Identities=15% Similarity=0.039 Sum_probs=71.2
Q ss_pred CCCCCCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC---ccEEEeecCCCCCchHHHhhhce-eccchhH--
Q 029723 65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI-- 138 (189)
Q Consensus 65 ~~~~~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~---G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~-- 138 (189)
|.+..+..+...--.+|+.+||+|+|||||||+|++|.+-..|. -.++.....+.... ....+.+- ..+++..
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~-~~av~~v~~~~~~e~~rl 163 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE-KQAVQAVVMETDHERKRL 163 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch-HHHHHHHhhhhHHHHHHH
Confidence 33334444444444569999999999999999999999987764 34444444443211 11111111 1122211
Q ss_pred ----HHHHhcCCC--------------CCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGCP--------------HAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~~--------------~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+...... .+.......++..+|..++.. ...++.+..||||+|.|++++
T Consensus 164 e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 164 EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 111010000 001112234566777777764 578999999999999999874
No 395
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.99 E-value=2.3e-10 Score=93.20 Aligned_cols=100 Identities=45% Similarity=0.638 Sum_probs=81.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHH
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~ 161 (189)
..++|.||+||||||||..++..++.+.++.+...|+.+.+++++.++. +..+...+++|..|++ +..++.++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~----da~m~~~a 86 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHL----DASMNLEA 86 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCC----cHHHHHHH
Confidence 4799999999999999999999998778999999999887787776662 3447778889966785 78888888
Q ss_pred HhhcCCchh-hccccccCChHHHHhhhc
Q 029723 162 LEELSNLFK-ADLLLCESGGGNLQTISF 188 (189)
Q Consensus 162 L~~lgL~~~-~~~~~~eLSGGqrq~~~~ 188 (189)
++.|..+.. .+..+.|..|+.-++.++
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp 114 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSP 114 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCc
Confidence 888876533 688888888877776654
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.1e-10 Score=101.58 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=61.6
Q ss_pred CCCCCCCCc-ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC--CCCCchHHHh-------hhceec
Q 029723 64 YFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND--IFTKEDGEFL-------MRNGAL 133 (189)
Q Consensus 64 ~~~~~~~~~-~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d--i~~~~~~~~~-------~~iG~v 133 (189)
+|.++.+.. -++.+. .|..+||+|+||+|||||||+|+. |.|...... +.+....... ...-++
T Consensus 89 a~G~k~LL~~a~L~L~-~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl 162 (582)
T KOG0062|consen 89 AYGGKILLNKANLTLS-RGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFL 162 (582)
T ss_pred eecchhhhcCCceeee-cccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccchHHHhhhhhccHHHHHHH
Confidence 444444333 334444 689999999999999999999998 222211111 1000000000 011122
Q ss_pred cchhHHHHHhcCCCCCChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 134 ~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++...+ .+ + +-.+.+.++|..||..+ ...+++.+||||-|.|++++
T Consensus 163 ~~e~~l~--~~----~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 163 AEEKELL--AG----L---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALA 210 (582)
T ss_pred Hhhhhhh--cc----c---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHH
Confidence 2221111 00 0 11222334899999975 67889999999999999874
No 397
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=1.2e-09 Score=108.17 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=81.7
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC----CccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p----~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i 141 (189)
-.-..++|+.+.++||+||||||||++|+|-+.. .|+|.++|.+...... ++.++|+.|... +.+
T Consensus 134 ~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTVreTl 210 (1391)
T KOG0065|consen 134 ISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTVRETL 210 (1391)
T ss_pred cceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEEeehh
Confidence 3444556999999999999999999999997653 3789999998854332 567899998765 444
Q ss_pred HhcCCCCCC---h----H--HHHHHHHHHHhhcCCchhhc-----cccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAA---I----R--EDISINLGPLEELSNLFKAD-----LLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~---~----~--~d~~~v~~~L~~lgL~~~~~-----~~~~eLSGGqrq~~~~i 189 (189)
.+...|... + + ....+.+.+|+.+||+.-.+ ..+.-.|||||+||+++
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~ 272 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIG 272 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeee
Confidence 554444322 1 1 12235778999999986554 44567999999999864
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.92 E-value=1.2e-09 Score=90.43 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=70.3
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------- 138 (189)
-|..-+.++.-+ |....|||.|||||||||++|+|---.. |.|.+.|.+.+....-+-.....|+--+=.
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~age 106 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE 106 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccccccccc
Confidence 345544444443 7888899999999999999999964334 889999988764221111122333322110
Q ss_pred ---------HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 139 ---------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 ---------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+.+.++..- .+.++-+++++.|++. ..-++..+|-|||+||.|
T Consensus 107 vplq~D~sae~mifgV~g-----~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQi 158 (291)
T KOG2355|consen 107 VPLQGDISAEHMIFGVGG-----DDPERREKLIDILDID--LRWRMHKVSDGQRRRVQI 158 (291)
T ss_pred ccccccccHHHHHhhccC-----CChhHhhhhhhheecc--ceEEEeeccccchhhhHH
Confidence 111111110 1234556677777775 566788999999999976
No 399
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.87 E-value=1.8e-09 Score=98.47 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=48.0
Q ss_pred ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.++++. .+|++++|+|||||||||||+ ++++.|+ | +|.++|.++...+..++.. +-+|||+..
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~fn 88 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGFN 88 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhhh
Confidence 445555 359999999999999999999 6777776 6 7999999997655544322 228899865
No 400
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.86 E-value=2.2e-09 Score=91.71 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=47.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc-hHHHhhhceeccchh
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEER 137 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~-~~~~~~~iG~v~Q~~ 137 (189)
.-++|+|||||||||||++|+++++|. |+|.++|.++...+ ..++.+.+++++|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence 568999999999999999999999998 99999999986543 346666778888865
No 401
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.85 E-value=1.9e-09 Score=96.91 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHH-hhhceeccchhHHHHHhcCCCCCChHHHHH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETGGCPHAAIREDIS 156 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~ 156 (189)
..+++..+|.||.|||||+++++|.++|+ ++|-........ ..+ .+.-+.|-|-...-+ ...++ +..
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykp---qkispK~~~tvR~ll~~kI---r~ay~----~pq 435 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKP---QKISPKREGTVRQLLHTKI---RDAYM----HPQ 435 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccc---cccCccccchHHHHHHHHh---Hhhhc----CHH
Confidence 45899999999999999999999999997 444433322210 000 011111111100000 00111 334
Q ss_pred HHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 157 INLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 157 ~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
-+.+.++-|.++...++-+..|||||+||++++
T Consensus 436 F~~dvmkpL~ie~i~dqevq~lSggelQRval~ 468 (592)
T KOG0063|consen 436 FVNDVMKPLQIENIIDQEVQGLSGGELQRVALA 468 (592)
T ss_pred HHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHH
Confidence 566778888888889999999999999999975
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.85 E-value=1.5e-09 Score=88.18 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.7
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALC 102 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~ 102 (189)
..+++.+....++++|+|||||||||||++|+
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34566665433589999999999999999998
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.83 E-value=3.6e-09 Score=95.03 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=66.7
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcc--------cCC-ccEEEeecCCCCCchHHHhhhce-eccchhHHHHH
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVE 142 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll--------~p~-G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~~~i~ 142 (189)
++++. ++|++++|+|++||||||||++|+|.. +|+ |.|.+-.+.+..+-+.+.--.++ ..++ +.+
T Consensus 401 ~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til---ehl- 476 (593)
T COG2401 401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL---EHL- 476 (593)
T ss_pred ceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH---HHH-
Confidence 44444 469999999999999999999999974 466 77765544332111111000011 0000 111
Q ss_pred hcCCCCCChHHHHHHHHHHHhhcCCch--hhccccccCChHHHHhhhcC
Q 029723 143 TGGCPHAAIREDISINLGPLEELSNLF--KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 143 ~g~~~~~~~~~d~~~v~~~L~~lgL~~--~~~~~~~eLSGGqrq~~~~i 189 (189)
. +...|...+.++|.++||.+ +..+.+.+||-||+-|+.|+
T Consensus 477 -~-----s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLA 519 (593)
T COG2401 477 -R-----SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLA 519 (593)
T ss_pred -h-----hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHH
Confidence 0 11125566788999999975 56778999999999998653
No 404
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.82 E-value=7e-09 Score=83.22 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHH
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA 140 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~ 140 (189)
|++++|+||||||||||+++|++++.+ .+.+.+..+...........+++++|+....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEFFTR 59 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHHHHH
Confidence 689999999999999999999998765 4666665554333333445788888886533
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.8e-09 Score=95.82 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=69.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHh---------cCCCCCCh
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET---------GGCPHAAI 151 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~---------g~~~~~~~ 151 (189)
..++++|+||+||||+++++.+-+.|. |.+.+.. +++|+|.+|.-...+.. ...+..
T Consensus 391 sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-- 457 (582)
T KOG0062|consen 391 SRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-- 457 (582)
T ss_pred hhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCC--
Confidence 678999999999999999999999887 7665443 34788888865422111 111221
Q ss_pred HHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 152 REDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 152 ~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
..+.++..|..|||.. .....+..||||||-||+|+
T Consensus 458 --~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 458 --TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFA 494 (582)
T ss_pred --CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHH
Confidence 3567888999999975 55666889999999999985
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.78 E-value=6.7e-09 Score=83.75 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=51.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCc--hHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG 160 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~ 160 (189)
+++|+|+||||||||+++|++++ +.+.+.+...|..-.. ..+......+.++.+ ... +.....+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l-~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~~ 66 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL-GNPKVVIISQDSYYKDLSHEELEERKNNNYDHP---------DAF----DFDLLIS 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCCCeEEEEecccccccccccHHHhccCCCCCC---------Ccc----cHHHHHH
Confidence 58999999999999999999998 3467777776643211 111111111111111 001 2234445
Q ss_pred HHhhcCCchhhccccccCChHHHHh
Q 029723 161 PLEELSNLFKADLLLCESGGGNLQT 185 (189)
Q Consensus 161 ~L~~lgL~~~~~~~~~eLSGGqrq~ 185 (189)
.|..+........+..++|.+++++
T Consensus 67 ~l~~l~~~~~~~~p~~d~~~~~~~~ 91 (198)
T cd02023 67 HLQDLKNGKSVEIPVYDFKTHSRLK 91 (198)
T ss_pred HHHHHHCCCCEeccccccccCcccC
Confidence 6665555445566666777776654
No 407
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.74 E-value=2.1e-08 Score=81.69 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=40.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCc--hHHHhhhceeccchh
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE--DGEFLMRNGALPEER 137 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~--~~~~~~~iG~v~Q~~ 137 (189)
.++|++++|+|+||||||||+++|++++++ +.+.+...|..-.. ........++.+|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~ 63 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK-LEIVIISQDNYYKDQSHLEMAERKKTNFDHP 63 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc-cCCeEecccccccChhhCCHHHhcCCCCCCc
Confidence 356899999999999999999999999876 34444444432211 112234566666654
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.73 E-value=1.7e-08 Score=103.73 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
+++ ++|+.++|... +++.+.+|||||+||++|+
T Consensus 788 ~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 788 EKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHH
Confidence 344 57888999875 7999999999999999874
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=1.5e-08 Score=81.48 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g 115 (189)
+|++++|+|||||||||||++|+++++|+ +.|.+.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 58999999999999999999999999988 7777654
No 410
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.64 E-value=4.3e-08 Score=78.56 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~ 119 (189)
+|++++|+|+||||||||+++|++++.+ +.+++.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccC
Confidence 5899999999999999999999999876 567776663
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.63 E-value=5.6e-08 Score=95.33 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 158 NLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
..++|+.++|.. .+++.+.+|||||+||++|+
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LA 842 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLA 842 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHH
Confidence 356788889975 47889999999999999874
No 412
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=3.6e-08 Score=89.59 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=46.8
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee---cCCCCCchHH----Hhhhceeccchh
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT---NDIFTKEDGE----FLMRNGALPEER 137 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g---~di~~~~~~~----~~~~iG~v~Q~~ 137 (189)
-..+|++++|+|+|||||||||++|+++.+|+ |.|.+.| .++....... +++.|+|++|..
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 45579999999999999999999999999998 8888764 5543222222 235799999864
No 413
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.62 E-value=6.2e-08 Score=87.97 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=67.9
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEee---cCCCCCchHHHh---hhceec-----cchhH-
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT---NDIFTKEDGEFL---MRNGAL-----PEERI- 138 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g---~di~~~~~~~~~---~~iG~v-----~Q~~~- 138 (189)
+.+.-..+|++++|+|+||+|||||+++|+++.++ + +.|.+.| .++......++. .+..++ +|.|.
T Consensus 156 D~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~ 235 (442)
T PRK06315 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQL 235 (442)
T ss_pred eccccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHH
Confidence 33433446999999999999999999999998854 4 5566644 444222222221 235555 88875
Q ss_pred ------------HHHHhcCCCCCChHHHHHHHHHHHhhcCCc-----hhhccccccCC
Q 029723 139 ------------RAVETGGCPHAAIREDISINLGPLEELSNL-----FKADLLLCESG 179 (189)
Q Consensus 139 ------------~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~-----~~~~~~~~eLS 179 (189)
+.+..-....+...++..++.+++++++|. .....++.+||
T Consensus 236 rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 236 RLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred HhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 111111111112345678899999999993 35677888877
No 414
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.61 E-value=4.5e-08 Score=86.77 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=39.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC---Cc-cEEEeecCCCCCchHHHhhhceeccch
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD---KY-SLAAVTNDIFTKEDGEFLMRNGALPEE 136 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~G-~I~i~g~di~~~~~~~~~~~iG~v~Q~ 136 (189)
.++.++.|+||+||||||||++|++.+.+ .+ .|...+.++. .....+....+++.|.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~~~~~~~v~Q~ 192 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEIETISASVCQS 192 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-Eeccccccccceeeee
Confidence 46889999999999999999999998842 33 5555555442 3333333334566664
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.60 E-value=4e-08 Score=66.24 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=30.6
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
..+.|.+.|.++.|+|+|||||||||.+|.-++-+.
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 355677678899999999999999999999887664
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=6.2e-08 Score=87.86 Aligned_cols=121 Identities=16% Similarity=0.115 Sum_probs=74.0
Q ss_pred CCCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc---ccCCccEEEeecCCCCCchHHH-------hhhceeccchhH
Q 029723 69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF---LRDKYSLAAVTNDIFTKEDGEF-------LMRNGALPEERI 138 (189)
Q Consensus 69 ~~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl---l~p~G~I~i~g~di~~~~~~~~-------~~~iG~v~Q~~~ 138 (189)
.+..|.......|..+|||||||-||||||+-|+.. ++|.-.+.+.++.+...+...+ .+++.++-.+..
T Consensus 278 ~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~ 357 (807)
T KOG0066|consen 278 LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAK 357 (807)
T ss_pred eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 444455555556889999999999999999999863 4555778888877743221111 112222211111
Q ss_pred --HHHHhcCCC---CC----------ChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP---HA----------AIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~---~~----------~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
..+.-|... .+ .-.....+++.+|.-||+.. ..+++...+|||-|.||+++
T Consensus 358 L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 358 LMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence 111111000 00 00112356788999999975 56788889999999999874
No 417
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.57 E-value=2.5e-08 Score=82.20 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
-.+..|+|+|||||||||.+|+-.+-
T Consensus 23 ~g~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 23 PSLNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 35778999999999999999987663
No 418
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.56 E-value=8.2e-08 Score=77.80 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=44.3
Q ss_pred cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.|..++.+++|+|+||||||||.+.|.+.+.+. |.+.+++.++. ..+...++|.+|+..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~----~~~~~~~~~~~~~~~ 79 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR----HGLCSDLGFSDADRK 79 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH----hhhhhcCCcCcccHH
Confidence 455678999999999999999999999988765 56777775542 122235778777764
No 419
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.56 E-value=9.7e-08 Score=79.10 Aligned_cols=40 Identities=38% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE-eecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA-VTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i-~g~di 118 (189)
.+..+++|+|+||||||||+++|++++++. |.+.+ ...|-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 346899999999999999999999999987 87555 44443
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=7.1e-08 Score=94.47 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 158 NLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
..++|+.++|.. .+++.+.+|||||+||++|+
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA 840 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA 840 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHH
Confidence 446788889975 47899999999999999874
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.54 E-value=2.6e-08 Score=81.75 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=31.6
Q ss_pred CCCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 69 ~~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
....|+++|..+ |++++|+||||+||||||++|+++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356678888776 6999999999999999999998764
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.54 E-value=4.6e-08 Score=79.82 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+..|++++.. |++++|+||||||||||||+|++...
T Consensus 15 ~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 15 RVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred eecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4568888885 69999999999999999999998653
No 423
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.52 E-value=1.1e-07 Score=83.02 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc------hHHHhhhceeccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPE 135 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~------~~~~~~~iG~v~Q 135 (189)
++++++|+|||||||||++..|++.+.+. ++|.+.+.|..... ....++.+.+++|
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 57999999999999999999999999888 79999998875421 1223446788776
No 424
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.52 E-value=8.9e-08 Score=77.28 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4799999999999999999999999875
No 425
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.50 E-value=1.4e-07 Score=81.42 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCCCch
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKED 123 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~~~~ 123 (189)
-.++||.|+||||||||+++|.+++. |+ |.|.+.+.|-.....
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~ 107 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN 107 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH
Confidence 48999999999999999999999987 65 889888887754433
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.49 E-value=1.7e-07 Score=74.17 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA 113 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i 113 (189)
|++++|+||||||||||++.|+.++.+.|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 568999999999999999999998765555544
No 427
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.47 E-value=1.8e-07 Score=80.00 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=37.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
+++|+|+||||||||+++|++++++.+...+...++....... ++.+|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~-r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKG-RKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHH-HHHhhcccccc
Confidence 5899999999999999999999988743334444554333322 34556655544
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=5.1e-07 Score=76.40 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
.+|+.++|+|++|+|||||++.|+..+...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 369999999999999999999999988764
No 429
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.38 E-value=8.2e-08 Score=79.64 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=28.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALC 102 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~ 102 (189)
...|++++.. +++++.|+||||+||||||++|+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 3567888886 57999999999999999999987
No 430
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.35 E-value=4.8e-07 Score=74.98 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDI 118 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di 118 (189)
++||.|+||||||||+++|++++.+ . +.|.+...|-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 5899999999999999999999974 4 6777755443
No 431
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.35 E-value=2.6e-07 Score=75.03 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=28.5
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
...|++.+. +|++++|+|||||||||||++|++.
T Consensus 19 ~~~~~~~l~-~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 19 FVPNDINLG-SGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEeeeEEEc-CCeEEEEECCCCCccHHHHHHHHHH
Confidence 455677777 4799999999999999999999943
No 432
>PLN02796 D-glycerate 3-kinase
Probab=98.35 E-value=9.1e-07 Score=78.08 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=31.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIF 119 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~ 119 (189)
.++||+|++|||||||+++|.+++++. |.|.+++..+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 459999999999999999999999863 56777776653
No 433
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.34 E-value=3.6e-07 Score=73.35 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.+|+||||||||++|.+|+-.+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999986653
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.27 E-value=2.7e-07 Score=83.31 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=66.2
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE--eecCCCCC-chHHHhh--------------hceeccc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA--VTNDIFTK-EDGEFLM--------------RNGALPE 135 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i--~g~di~~~-~~~~~~~--------------~iG~v~Q 135 (189)
++-.-.+|+++++||.||.||||-|++++|-++|. |.... +...+.+. ...++.. +..||-|
T Consensus 93 rlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ 172 (592)
T KOG0063|consen 93 RLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQ 172 (592)
T ss_pred cCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHH
Confidence 33444579999999999999999999999999998 64310 11111000 0001100 0001111
Q ss_pred hhHHHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 136 ~~~~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
-| ..+.......+....+.....++++.+.|....++-+.+||||+.||.+|+
T Consensus 173 ip-r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia 225 (592)
T KOG0063|consen 173 IP-RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIA 225 (592)
T ss_pred HH-HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhh
Confidence 10 000000000111122333456778888888889999999999999998874
No 435
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=1.4e-06 Score=79.25 Aligned_cols=64 Identities=17% Similarity=0.041 Sum_probs=47.2
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--------CchHHHhhhceeccc
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--------KEDGEFLMRNGALPE 135 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--------~~~~~~~~~iG~v~Q 135 (189)
.+.+.-..+|++++|+|+||+||||||++|+++.+++ |.|.+.|.+-.. .....+++.+.++.+
T Consensus 149 id~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 149 IDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 3444444579999999999999999999999999998 988887654421 122234567777754
No 436
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=7.2e-07 Score=80.94 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=43.9
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCCchHHH------hhhceeccchhH
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEF------LMRNGALPEERI 138 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~~~~~~------~~~iG~v~Q~~~ 138 (189)
+.+.+.-..+|++++|+|+||+|||||+++|+++.+++ ..+...+. ++.......+ +..+++++|+..
T Consensus 145 aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 145 AINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eccceEeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 33444334469999999999999999999999998876 43333332 2221111111 235788888743
No 437
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.22 E-value=1.5e-06 Score=70.60 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
.++.+++|+|+||||||||.+.|++.+. .+.+.+...|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~-~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG-DESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCceEEEeCCc
Confidence 3678999999999999999999999883 34566655554
No 438
>PRK08149 ATP synthase SpaL; Validated
Probab=98.22 E-value=9.2e-07 Score=80.13 Aligned_cols=65 Identities=15% Similarity=0.009 Sum_probs=44.6
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchHHH----hhhceeccch
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEF----LMRNGALPEE 136 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~~~----~~~iG~v~Q~ 136 (189)
.+.+.-..+|++++|+|+||+||||||++|++...++ |.|.+.+.++.......+ ++++++|+..
T Consensus 142 id~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 142 IDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EeeeeeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 3344334479999999999999999999999988765 555566666543222222 2467777654
No 439
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=1.4e-06 Score=80.03 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIF 119 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~ 119 (189)
.+|.+++||||||+||||++..|++.+... | +|.+...|..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 468999999999999999999999988654 5 4666666654
No 440
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=6.8e-07 Score=76.83 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i 113 (189)
++.+++|+|+||+|||||++.|+|...++ |+|..
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 35899999999999999999999998887 88865
No 441
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.20 E-value=5e-07 Score=87.22 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=30.4
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc-ccCC
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKF-LRDK 108 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl-l~p~ 108 (189)
.-|++.+.....+++|+||||+||||||++|+++ +.+.
T Consensus 312 vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq 350 (771)
T TIGR01069 312 VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ 350 (771)
T ss_pred EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH
Confidence 3466666655589999999999999999999998 4444
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=98.19 E-value=1.9e-06 Score=76.33 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
.+|++++|+|+||+|||||+++|+|...++ |.|.+++..
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~ 232 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCC
Confidence 368999999999999999999999999988 999987643
No 443
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.18 E-value=1.7e-06 Score=68.27 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
|.+++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 67999999999999999999999764
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.17 E-value=1.9e-06 Score=74.72 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~ 114 (189)
.|+.++|+|++||||||||++|++++++. +.+.+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 57899999999999999999999999887 655553
No 445
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.14 E-value=1.4e-06 Score=71.88 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
...|++++..+.++++|+|||||||||||++|+++
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHH
Confidence 35688888877799999999999999999999753
No 446
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=1.4e-06 Score=75.32 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i 113 (189)
+|.+++|+|+||+|||||++.|++...+. |+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 47899999999999999999999998877 88875
No 447
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=1.2e-06 Score=79.73 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=43.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCchH---HHhhhceeccchhH
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDG---EFLMRNGALPEERI 138 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~~~---~~~~~iG~v~Q~~~ 138 (189)
..+|++++|+|+||+||||||++|+++.+++ |.|.+.+.++...-.. .-.+..++|+|...
T Consensus 172 I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 172 VGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 3569999999999999999999999999886 5666666666321000 00235677777653
No 448
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.10 E-value=2.6e-06 Score=70.21 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCcccCcccCCC-cEEEEEcCCCchHHHHHHHHH
Q 029723 70 PPILSRNFNERA-FTVGIGGPVGTGKTALMLALC 102 (189)
Q Consensus 70 ~~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~ 102 (189)
..-|++.+.... .++.|+||||+||||||+.|+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 455777777654 889999999999999999998
No 449
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.09 E-value=3.9e-06 Score=73.64 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=37.9
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
.+.+.-..+|++++|+|+||+||||||++|+++..++ +.+...|.+-
T Consensus 60 iD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 60 IDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred EeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 3344333469999999999999999999999999998 8777776543
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.07 E-value=6.3e-06 Score=59.85 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+..+.|+||+|+|||||++.|+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999998766
No 451
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.06 E-value=3.8e-06 Score=66.37 Aligned_cols=39 Identities=36% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
.+|++++|+|++||||||+.+.|++.+.+. +.+.+.+.|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 468999999999999999999999998766 566654444
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=5.2e-06 Score=84.30 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=40.8
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHH----hcccCC--ccEEEeecCCCCCchHHHhhhceeccc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALC----KFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~----Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q 135 (189)
.+.|. ..+++|+|||||||||||.+|+ |.++|. |.+.|.+.++... ......|.++|+
T Consensus 23 ~I~F~--~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a~V~l~F~ 86 (1311)
T TIGR00606 23 IIDFF--SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRAQIRLQFR 86 (1311)
T ss_pred eeecc--cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--HhhhheeEEEEE
Confidence 34454 3589999999999999999995 888884 8877776655322 233345555554
No 453
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.03 E-value=4.5e-06 Score=64.74 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc----ccCC-c----cEEEeecC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF----LRDK-Y----SLAAVTND 117 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl----l~p~-G----~I~i~g~d 117 (189)
.-.++|+|+||||||||++.|++. ..|+ | .+.+.+.+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~ 59 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFK 59 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEE
Confidence 356999999999999999999997 4466 6 55554443
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.03 E-value=5.4e-06 Score=67.39 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=30.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDI 118 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di 118 (189)
++.|+||+|||||||++.|++.+.+ . +.|...+.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6889999999999999999988764 3 6777777655
No 455
>PRK07429 phosphoribulokinase; Provisional
Probab=98.01 E-value=8e-06 Score=71.68 Aligned_cols=28 Identities=29% Similarity=0.620 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
--+++|.|++|||||||++.|++++.+.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 3689999999999999999999999877
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.01 E-value=8.3e-07 Score=81.48 Aligned_cols=105 Identities=9% Similarity=-0.046 Sum_probs=61.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH--hcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI 155 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~--Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~ 155 (189)
++|.++.|.|++|||||||...++ |+.+.. ..++|.-.. ...+..+..+.+|+-+++... -+....+... ..
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE-~~~~l~~~~~~~G~~~~~~~~---~g~l~~~~~~-~~ 93 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE-SPQDIIKNARSFGWDLQKLVD---EGKLFILDAS-PD 93 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CHHHHHHHHHHcCCCHHHHhh---cCceEEEecC-ch
Confidence 368999999999999999988763 555533 334444321 111222234467876665431 1110001000 11
Q ss_pred HHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 156 SINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 156 ~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
.....+++.+++....++.+.++|+|++|||.|
T Consensus 94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvI 126 (484)
T TIGR02655 94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSI 126 (484)
T ss_pred hccccccccCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 112234566777777888888999999998876
No 457
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.00 E-value=6.6e-06 Score=74.44 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
.+|++++|+|+||+||||||++|+++.+|+ |.|.+.|...
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~ 178 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG 178 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence 368999999999999999999999999998 8888887644
No 458
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.98 E-value=5e-06 Score=69.19 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHh-cccCC-ccE
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCK-FLRDK-YSL 111 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~G-ll~p~-G~I 111 (189)
...|+++|.. +|+++.|+||||+||||||++|++ .+.+. |..
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3457788874 589999999999999999999999 44444 543
No 459
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.98 E-value=5.2e-06 Score=65.51 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=30.7
Q ss_pred EcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 87 iGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
+|+||||||||+++|++.+ |.+.+++..+. .....++...|+.+|+.
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~-~~~~~~~~~~g~~~~~~ 47 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLH-PRRNIEKMASGEPLNDD 47 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCC-chhhhccccCCCCCChh
Confidence 6999999999999999987 46777763331 11111223456777663
No 460
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.7e-06 Score=74.89 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+..+|++++||||||+||||||+.|++.+
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999998853
No 461
>PLN02165 adenylate isopentenyltransferase
Probab=97.97 E-value=8.9e-06 Score=71.55 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=38.5
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhccc---CC-ccE-EEeecCCCCCc
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSL-AAVTNDIFTKE 122 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~---p~-G~I-~i~g~di~~~~ 122 (189)
.-+..+|.+++|+||+|||||||...|++.+. .+ +++ .+.|.+|.+..
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTak 89 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQ 89 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCC
Confidence 34666799999999999999999999999875 24 666 56888886543
No 462
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.97 E-value=6.7e-06 Score=67.01 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=33.6
Q ss_pred CcccCcccCCC-cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 71 PILSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 71 ~~~~~~f~~~G-eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
..++..++..| -+++|+|+.|||||||++.++..+...-++.+...+.
T Consensus 11 ~~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~ 59 (207)
T TIGR00073 11 EKNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV 59 (207)
T ss_pred HHHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 34555566666 7789999999999999999987644223444444454
No 463
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.97 E-value=7.8e-06 Score=65.16 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.3
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCC
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI 118 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di 118 (189)
+..+|+++.|+|++|||||||.+.|.+.+...| .+.+++.++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 445789999999999999999999999986543 355655443
No 464
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.95 E-value=6.7e-06 Score=61.71 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHhc
Q 029723 84 VGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gl 104 (189)
++|+|++|||||||++.|++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999997
No 465
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=9.2e-06 Score=72.55 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=34.4
Q ss_pred cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCCC
Q 029723 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFT 120 (189)
Q Consensus 76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~~ 120 (189)
.+..+|.+++|+||||+||||++..|+..+... | .|.+...|...
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 455678999999999999999999999865322 3 56666666543
No 466
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.94 E-value=1.1e-05 Score=67.20 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCchHHHH-HHHHHhcccCC-ccEEEe
Q 029723 79 ERAFTVGIGGPVGTGKTAL-MLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTL-L~~L~Gll~p~-G~I~i~ 114 (189)
++|+++.|+|+|||||||| ++++++++++. ..+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4689999999999999999 78999887665 444444
No 467
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.94 E-value=1e-05 Score=71.14 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
+..+++|+|++|||||||+..|...+... .+|.+...|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 45799999999999999999999998876 578888888754
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.93 E-value=5.4e-06 Score=65.46 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEE
Q 029723 81 AFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA 112 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~ 112 (189)
-.+++|+|++|||||||++.|+ |+..++ |.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~ 38 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLL 38 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHH
Confidence 4689999999999999999999 665555 6554
No 469
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.93 E-value=8.6e-06 Score=83.30 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=34.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
|.-.+.+++|+|+|||||||+|++|++++.|. |.+.+++.+
T Consensus 23 ~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 23 FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred EEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 33334699999999999999999999999888 888887654
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.93 E-value=8.3e-06 Score=76.63 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=30.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d 117 (189)
-+|+|.||||||||||+++|+++++..+.|.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 689999999999999999999998433888887753
No 471
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.92 E-value=9.6e-06 Score=73.67 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=38.5
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
.+.+.+.-..+|++++|+|+||+||||||++|+++..++ +.+.+.|..
T Consensus 144 ~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 344444444579999999999999999999999999998 777777654
No 472
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.91 E-value=8.4e-06 Score=64.42 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=32.8
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecC
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTND 117 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~d 117 (189)
+..+|.++.|+|++||||||+.+.|...+.. . +.+.+++..
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 4457899999999999999999999988763 3 566666533
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=8.9e-06 Score=78.29 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFT 120 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di~~ 120 (189)
+|++++||||||+||||++..|++.+... | +|.+...|...
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 58999999999999999999999988544 5 68887777644
No 474
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.91 E-value=1.4e-05 Score=72.79 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=37.9
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
..+.+.-..+|++++|+|+||+||||||++|++..+++ +.+...|..-
T Consensus 153 ~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 153 SIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred eeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 33444334469999999999999999999999999988 7777766543
No 475
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.90 E-value=1.3e-05 Score=72.65 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=37.5
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
.+.+.-..+|++++|+|+||+||||||++|++...++ +.+...|..-
T Consensus 136 id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~ 183 (422)
T TIGR02546 136 IDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERG 183 (422)
T ss_pred ehhhccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCC
Confidence 3344333468999999999999999999999999998 7777766543
No 476
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.90 E-value=9.7e-06 Score=73.45 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDI 118 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di 118 (189)
-.+|||+|++|||||||++.|.+++++. +.|.+++..+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 3889999999999999999999998753 5566666654
No 477
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.90 E-value=1.4e-05 Score=72.79 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=35.5
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
..+|++++|+|+||+||||||++|++...++ +.|.+.|..
T Consensus 160 i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 160 LGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 3479999999999999999999999999988 888877754
No 478
>PRK05922 type III secretion system ATPase; Validated
Probab=97.89 E-value=1.4e-05 Score=72.65 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
...-..+|+.++|+|+||+||||||++|++..+++ +.+...|..
T Consensus 150 ~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 150 AFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 34444569999999999999999999999998888 777666653
No 479
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.87 E-value=1.8e-05 Score=82.00 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=25.5
Q ss_pred HHHHHhhcCCch-hhccccccCChHHHHhhhc
Q 029723 158 NLGPLEELSNLF-KADLLLCESGGGNLQTISF 188 (189)
Q Consensus 158 v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~ 188 (189)
..+.|..+||.. .+.++..+|||||.||+-+
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikL 1710 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKI 1710 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHH
Confidence 445678889876 5788999999999999865
No 480
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.87 E-value=1.2e-05 Score=63.25 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=27.2
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..|.+.|.. +.++.|+|||||||||+|+.|+-.+-
T Consensus 12 ~~~~i~~~~-~~~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 12 VPNDVTFGE-GSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred eccEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445666654 36899999999999999999866543
No 481
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.87 E-value=1.1e-05 Score=65.20 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i 113 (189)
.++|+|+||+|||||+++|+|...++ |.+..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~ 34 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPT 34 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence 37999999999999999999977665 55443
No 482
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=1.3e-05 Score=60.78 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=30.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
++.|.|+||+|||||++.+++...+. +.+.+...+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 47899999999999999999988766 7887776654
No 483
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.85 E-value=1.8e-05 Score=71.49 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=34.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
..+|++++|+|+||+||||||++|+++.+++ +.+...|..
T Consensus 134 i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 134 VGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred EecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 3469999999999999999999999999988 666666654
No 484
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.84 E-value=1.8e-05 Score=68.28 Aligned_cols=47 Identities=32% Similarity=0.318 Sum_probs=37.0
Q ss_pred ccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723 73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (189)
Q Consensus 73 ~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~ 119 (189)
.++.+.. ++.+++|+|++|||||||++.|+..+... .++.+...|..
T Consensus 25 ~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 25 DRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred HhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3444433 47999999999999999999999988766 57777777754
No 485
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.84 E-value=2e-05 Score=72.93 Aligned_cols=44 Identities=27% Similarity=0.284 Sum_probs=36.9
Q ss_pred CcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 75 RNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 75 ~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
+.+.. .|+.+.|+|+||||||||+++|.++++|. |++.+....|
T Consensus 203 l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 203 LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 33443 47999999999999999999999999997 9888776554
No 486
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.83 E-value=1.8e-05 Score=63.00 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA 112 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~ 112 (189)
++.+++|+|++|+|||||+|.|.+-.... +.|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 35899999999999999999999975543 5554
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.83 E-value=1.3e-05 Score=64.43 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=28.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeec
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTN 116 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~ 116 (189)
.+++|+|++|||||||++.|+.++.+. |.|...+.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 489999999999999999999998763 55655444
No 488
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.82 E-value=2.1e-05 Score=71.10 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.8
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
+.+.-..+|++++|+|+||+||||||++|++..+++ |.|.+.|...
T Consensus 129 D~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 129 DGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 333333469999999999999999999999999988 8887777654
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.82 E-value=1.4e-05 Score=61.41 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+++|+||+|||||||++.|+..+++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 47899999999999999999987654
No 490
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=1.4e-05 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+|+|.|++|||||||.+.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 491
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.81 E-value=2.8e-05 Score=61.43 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=25.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYS 110 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~ 110 (189)
+++|.|++|||||||++.|+..+.+.|.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~ 29 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGY 29 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999876653
No 492
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.80 E-value=1.8e-05 Score=62.58 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.5
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.+.+..+.-.++|+|++|||||||++.+++
T Consensus 12 ~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 12 SLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345555555679999999999999999998
No 493
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.79 E-value=2.1e-05 Score=61.35 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=32.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~ 119 (189)
+++|+|++|||||||++.++..+.+. .++.+...|..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 37899999999999999999988877 78888887764
No 494
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.79 E-value=1.9e-05 Score=62.09 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=28.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCc-cEEEeec
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTN 116 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g~ 116 (189)
+++|+|++|||||||++.|+..+++.| +|.+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 579999999999999999999988765 7766543
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.79 E-value=1.5e-05 Score=60.28 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHH--hcccCC
Q 029723 84 VGIGGPVGTGKTALMLALC--KFLRDK 108 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~--Gll~p~ 108 (189)
++|+|++|||||||++.|+ +..++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~ 28 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART 28 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee
Confidence 6899999999999999999 555543
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.78 E-value=2.6e-05 Score=60.13 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
.+|.++.|.|+.|||||||++.|+..+..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999987653
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.78 E-value=2.4e-05 Score=67.07 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=34.6
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeecCC
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDI 118 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~di 118 (189)
..|..++.+++|+||+|+||||++..|+..+... | +|.+...|.
T Consensus 188 ~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 188 DEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3344568899999999999999999999877543 3 677777665
No 498
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.77 E-value=4.3e-05 Score=63.79 Aligned_cols=29 Identities=41% Similarity=0.470 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
...++.|+||||+|||||++.++..+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 34689999999999999999999987754
No 499
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=2.8e-05 Score=70.71 Aligned_cols=46 Identities=20% Similarity=0.061 Sum_probs=37.3
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
+.+.-..+|++++|+|+||+|||||+++|++...++ +.|...|..-
T Consensus 149 d~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg 195 (434)
T PRK08472 149 DGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG 195 (434)
T ss_pred hhcceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence 334333479999999999999999999999988877 8777777654
No 500
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.76 E-value=7e-05 Score=70.87 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-c--------cEEEeecCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-Y--------SLAAVTNDI 118 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--------~I~i~g~di 118 (189)
...+.|+||||+|||||+++|.++.++. | -|.+++..+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4679999999999999999999987543 3 366666544
Done!