Query 029723
Match_columns 189
No_of_seqs 347 out of 1177
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 2.8E-27 9.4E-32 200.6 7.1 119 71-189 23-155 (275)
2 3tui_C Methionine import ATP-b 99.9 7.7E-27 2.6E-31 205.1 7.6 120 70-189 42-175 (366)
3 4g1u_C Hemin import ATP-bindin 99.9 1.2E-26 4E-31 195.6 7.6 119 70-189 25-153 (266)
4 1z47_A CYSA, putative ABC-tran 99.9 1.4E-26 4.9E-31 202.7 8.4 118 70-189 29-157 (355)
5 3tif_A Uncharacterized ABC tra 99.9 2.2E-26 7.6E-31 190.4 9.1 119 71-189 20-157 (235)
6 3fvq_A Fe(3+) IONS import ATP- 99.9 1.6E-26 5.5E-31 202.7 7.2 120 70-189 18-150 (359)
7 2olj_A Amino acid ABC transpor 99.9 2.9E-26 9.9E-31 193.1 8.2 120 70-189 38-171 (263)
8 1g6h_A High-affinity branched- 99.9 5.2E-26 1.8E-30 190.3 8.8 119 71-189 22-165 (257)
9 2ihy_A ABC transporter, ATP-bi 99.9 4.3E-26 1.5E-30 193.4 8.3 120 70-189 35-173 (279)
10 3rlf_A Maltose/maltodextrin im 99.9 3E-26 1E-30 202.3 6.9 117 71-189 18-145 (381)
11 2pcj_A ABC transporter, lipopr 99.9 3.7E-26 1.2E-30 187.7 6.5 119 71-189 19-152 (224)
12 1ji0_A ABC transporter; ATP bi 99.9 3.6E-26 1.2E-30 189.6 6.1 119 71-189 21-151 (240)
13 1b0u_A Histidine permease; ABC 99.9 1E-25 3.4E-30 189.3 7.7 119 71-189 21-165 (262)
14 2yyz_A Sugar ABC transporter, 99.9 9.4E-26 3.2E-30 197.8 7.5 117 71-189 18-145 (359)
15 1vpl_A ABC transporter, ATP-bi 99.9 8.2E-26 2.8E-30 189.5 6.6 119 70-189 29-158 (256)
16 1v43_A Sugar-binding transport 99.9 1.5E-25 5.1E-30 197.3 8.2 117 71-189 26-153 (372)
17 1oxx_K GLCV, glucose, ABC tran 99.9 6.6E-26 2.3E-30 198.2 5.9 119 71-189 20-152 (353)
18 2it1_A 362AA long hypothetical 99.9 1.4E-25 4.9E-30 196.8 7.4 118 70-189 17-145 (362)
19 2ff7_A Alpha-hemolysin translo 99.9 6E-26 2.1E-30 189.2 4.5 115 70-189 23-157 (247)
20 2qi9_C Vitamin B12 import ATP- 99.9 2.1E-25 7.2E-30 186.4 7.2 115 71-189 15-138 (249)
21 2yz2_A Putative ABC transporte 99.9 2E-25 6.8E-30 187.7 6.9 116 71-189 22-150 (266)
22 3d31_A Sulfate/molybdate ABC t 99.9 1.2E-25 4E-30 196.4 5.6 115 71-189 15-139 (348)
23 2onk_A Molybdate/tungstate ABC 99.9 3.6E-25 1.2E-29 183.9 6.9 114 72-189 15-138 (240)
24 1g29_1 MALK, maltose transport 99.9 2.2E-25 7.4E-30 196.2 4.9 117 71-189 18-151 (372)
25 1mv5_A LMRA, multidrug resista 99.9 5E-25 1.7E-29 182.8 6.7 116 70-189 16-151 (243)
26 2ixe_A Antigen peptide transpo 99.9 5.3E-25 1.8E-29 185.8 6.3 120 70-189 33-168 (271)
27 3nh6_A ATP-binding cassette SU 99.9 6.7E-25 2.3E-29 188.6 7.1 116 69-189 67-202 (306)
28 1sgw_A Putative ABC transporte 99.9 1.9E-25 6.5E-30 182.9 2.9 112 70-189 23-145 (214)
29 3gd7_A Fusion complex of cysti 99.9 4.5E-24 1.5E-28 188.9 8.0 114 69-189 34-167 (390)
30 2d2e_A SUFC protein; ABC-ATPas 99.9 3.2E-24 1.1E-28 178.8 6.1 119 71-189 18-155 (250)
31 2zu0_C Probable ATP-dependent 99.9 6.3E-24 2.2E-28 178.8 6.3 120 70-189 34-176 (267)
32 2ghi_A Transport protein; mult 99.9 1E-23 3.6E-28 176.8 7.4 115 70-189 34-167 (260)
33 2nq2_C Hypothetical ABC transp 99.9 1.4E-23 4.7E-28 175.5 6.1 106 71-189 20-140 (253)
34 2pjz_A Hypothetical protein ST 99.9 7.2E-24 2.5E-28 178.4 2.3 112 71-189 20-140 (263)
35 3b5x_A Lipid A export ATP-bind 99.9 8.6E-23 2.9E-27 187.9 9.1 116 70-189 357-492 (582)
36 3b60_A Lipid A export ATP-bind 99.9 9.2E-23 3.1E-27 187.7 8.5 116 70-189 357-492 (582)
37 3qf4_B Uncharacterized ABC tra 99.9 1.3E-22 4.5E-27 187.4 6.0 116 69-189 368-503 (598)
38 2yl4_A ATP-binding cassette SU 99.9 2E-22 6.9E-27 185.9 6.1 118 70-189 358-495 (595)
39 4a82_A Cystic fibrosis transme 99.9 2.8E-22 9.5E-27 184.5 6.2 116 69-189 354-489 (578)
40 3qf4_A ABC transporter, ATP-bi 99.8 6.5E-22 2.2E-26 182.5 7.1 116 69-189 356-491 (587)
41 2pze_A Cystic fibrosis transme 99.8 1.1E-21 3.9E-26 161.3 7.6 101 70-189 22-142 (229)
42 2cbz_A Multidrug resistance-as 99.8 4.8E-22 1.6E-26 164.5 5.2 104 70-189 19-139 (237)
43 4f4c_A Multidrug resistance pr 99.8 1.6E-20 5.4E-25 186.7 6.9 117 70-189 1093-1229(1321)
44 2bbs_A Cystic fibrosis transme 99.8 1.9E-20 6.4E-25 159.6 5.3 100 70-189 52-171 (290)
45 3g5u_A MCG1178, multidrug resi 99.8 6.5E-20 2.2E-24 182.0 8.6 117 70-189 1047-1183(1284)
46 4f4c_A Multidrug resistance pr 99.8 6.1E-20 2.1E-24 182.6 7.6 116 69-189 431-566 (1321)
47 3g5u_A MCG1178, multidrug resi 99.8 5.6E-20 1.9E-24 182.4 6.9 115 70-189 404-538 (1284)
48 3bk7_A ABC transporter ATP-bin 99.8 4.5E-20 1.5E-24 171.2 0.6 95 79-189 380-483 (607)
49 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-19 7.3E-24 164.6 4.8 97 79-189 292-397 (538)
50 1yqt_A RNAse L inhibitor; ATP- 99.8 4.7E-20 1.6E-24 168.8 0.0 95 79-189 310-413 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 2.3E-19 7.9E-24 164.2 4.3 116 71-189 37-170 (538)
52 3bk7_A ABC transporter ATP-bin 99.7 6.9E-20 2.4E-24 170.0 -1.8 116 71-189 107-240 (607)
53 3ozx_A RNAse L inhibitor; ATP 99.7 2.3E-19 8E-24 164.3 0.6 117 73-189 17-150 (538)
54 3j16_B RLI1P; ribosome recycli 99.7 1.4E-18 4.8E-23 161.3 5.7 118 72-189 94-233 (608)
55 3j16_B RLI1P; ribosome recycli 99.7 9.9E-18 3.4E-22 155.6 7.5 93 81-189 378-479 (608)
56 2iw3_A Elongation factor 3A; a 99.6 1.3E-16 4.5E-21 154.4 7.9 46 70-115 687-734 (986)
57 2npi_A Protein CLP1; CLP1-PCF1 99.6 1.6E-18 5.4E-23 156.2 -5.1 97 80-189 137-247 (460)
58 3sop_A Neuronal-specific septi 99.6 6.7E-18 2.3E-22 142.2 -2.6 99 82-189 3-110 (270)
59 3ux8_A Excinuclease ABC, A sub 99.6 1.3E-16 4.4E-21 148.9 2.9 116 70-189 32-214 (670)
60 1z6g_A Guanylate kinase; struc 99.6 4E-17 1.4E-21 132.6 -0.9 108 74-188 15-133 (218)
61 3b85_A Phosphate starvation-in 99.6 5.4E-18 1.8E-22 137.9 -7.1 59 79-141 20-79 (208)
62 3aez_A Pantothenate kinase; tr 99.6 2.1E-16 7.1E-21 135.7 1.5 93 78-188 87-187 (312)
63 3ux8_A Excinuclease ABC, A sub 99.5 4.2E-15 1.4E-19 138.6 5.2 34 156-189 521-555 (670)
64 2iw3_A Elongation factor 3A; a 99.5 5.4E-15 1.8E-19 143.2 5.7 100 71-189 450-560 (986)
65 2rcn_A Probable GTPase ENGC; Y 99.5 2.6E-15 9E-20 131.4 2.9 109 74-188 208-324 (358)
66 2yv5_A YJEQ protein; hydrolase 99.5 2.3E-15 7.7E-20 128.3 1.3 109 80-189 164-299 (302)
67 3b9q_A Chloroplast SRP recepto 99.5 2.6E-16 9E-21 134.5 -5.1 104 74-188 92-212 (302)
68 2jeo_A Uridine-cytidine kinase 99.5 2.1E-15 7.1E-20 123.9 -0.8 103 71-188 14-127 (245)
69 1ye8_A Protein THEP1, hypothet 99.5 1.4E-15 4.9E-20 120.5 -2.4 85 83-189 2-88 (178)
70 1tf7_A KAIC; homohexamer, hexa 99.5 2.3E-16 7.7E-21 143.4 -8.9 113 69-188 25-144 (525)
71 1u0l_A Probable GTPase ENGC; p 99.5 3.9E-15 1.3E-19 126.6 -0.9 101 80-180 168-294 (301)
72 1znw_A Guanylate kinase, GMP k 99.5 7.4E-15 2.5E-19 117.6 0.5 98 78-179 17-136 (207)
73 2og2_A Putative signal recogni 99.4 1.5E-15 5.1E-20 133.0 -5.7 104 74-188 149-269 (359)
74 1tq4_A IIGP1, interferon-induc 99.4 7.2E-15 2.5E-19 130.8 -2.5 95 83-189 71-168 (413)
75 2f1r_A Molybdopterin-guanine d 99.4 9.6E-15 3.3E-19 115.4 -2.2 99 82-189 3-115 (171)
76 2v9p_A Replication protein E1; 99.4 1.3E-13 4.4E-18 118.3 3.8 40 72-113 116-156 (305)
77 1p9r_A General secretion pathw 99.4 3E-14 1E-18 126.9 -0.9 109 77-187 163-303 (418)
78 1rj9_A FTSY, signal recognitio 99.4 1.2E-14 4E-19 124.5 -4.0 59 80-138 101-166 (304)
79 2vf7_A UVRA2, excinuclease ABC 99.4 8.9E-14 3E-18 133.1 1.7 34 156-189 708-742 (842)
80 2r6f_A Excinuclease ABC subuni 99.4 1.9E-13 6.3E-18 132.1 3.6 33 157-189 824-857 (972)
81 4aby_A DNA repair protein RECN 99.3 2.4E-13 8.2E-18 118.8 2.6 66 71-137 50-156 (415)
82 2ygr_A Uvrabc system protein A 99.3 5.4E-13 1.9E-17 129.2 4.4 33 157-189 842-875 (993)
83 2dpy_A FLII, flagellum-specifi 99.3 3.2E-13 1.1E-17 120.8 0.9 65 72-136 148-221 (438)
84 3asz_A Uridine kinase; cytidin 99.3 6.9E-13 2.4E-17 105.5 2.0 93 78-183 3-95 (211)
85 2obl_A ESCN; ATPase, hydrolase 99.3 1.8E-12 6E-17 112.8 4.4 47 71-117 61-108 (347)
86 1t9h_A YLOQ, probable GTPase E 99.2 6.2E-13 2.1E-17 114.1 -0.9 104 80-184 172-302 (307)
87 1s96_A Guanylate kinase, GMP k 99.2 5.6E-12 1.9E-16 102.9 4.1 57 79-139 14-73 (219)
88 1htw_A HI0065; nucleotide-bind 99.2 3.8E-12 1.3E-16 99.1 2.9 60 73-138 24-85 (158)
89 3tr0_A Guanylate kinase, GMP k 99.2 7.7E-12 2.6E-16 98.5 4.3 56 80-138 6-61 (205)
90 1zp6_A Hypothetical protein AT 99.2 2.1E-13 7.2E-18 106.6 -5.2 56 79-138 7-63 (191)
91 1e69_A Chromosome segregation 99.2 4.3E-12 1.5E-16 108.4 2.6 30 74-105 19-48 (322)
92 2yhs_A FTSY, cell division pro 99.2 1.4E-11 4.9E-16 111.9 4.9 65 73-137 284-356 (503)
93 4gp7_A Metallophosphoesterase; 99.2 9.6E-12 3.3E-16 96.9 3.2 88 80-189 8-95 (171)
94 1nij_A Hypothetical protein YJ 99.2 1.1E-12 3.7E-17 112.3 -2.8 40 82-121 5-53 (318)
95 2qm8_A GTPase/ATPase; G protei 99.1 9.1E-12 3.1E-16 107.6 2.3 66 73-138 46-117 (337)
96 2x8a_A Nuclear valosin-contain 99.1 2.5E-12 8.4E-17 108.0 -1.5 108 74-189 38-149 (274)
97 2i3b_A HCR-ntpase, human cance 99.1 5.4E-12 1.8E-16 100.9 0.5 53 81-137 1-54 (189)
98 2pt7_A CAG-ALFA; ATPase, prote 99.1 1E-11 3.5E-16 107.1 0.9 55 79-135 169-224 (330)
99 3e70_C DPA, signal recognition 99.1 4.9E-11 1.7E-15 103.0 5.1 59 79-137 127-192 (328)
100 4a74_A DNA repair and recombin 99.1 2.4E-11 8.2E-16 96.9 2.8 41 78-118 22-70 (231)
101 3pih_A Uvrabc system protein A 99.1 4.3E-11 1.5E-15 115.5 5.0 34 156-189 783-817 (916)
102 2ehv_A Hypothetical protein PH 99.1 2.9E-11 9.9E-16 97.6 3.2 60 77-137 26-88 (251)
103 3c8u_A Fructokinase; YP_612366 99.1 9.5E-12 3.2E-16 99.5 0.1 41 78-118 19-63 (208)
104 1qhl_A Protein (cell division 99.1 4.8E-12 1.6E-16 104.2 -2.4 61 74-136 22-91 (227)
105 2qnr_A Septin-2, protein NEDD5 99.1 2.4E-12 8.1E-17 109.5 -5.2 100 83-188 20-124 (301)
106 3euj_A Chromosome partition pr 99.0 4.5E-11 1.5E-15 108.3 2.2 50 72-121 20-70 (483)
107 4eun_A Thermoresistant glucoki 99.0 2.1E-10 7.3E-15 90.9 5.8 56 79-138 27-82 (200)
108 2gza_A Type IV secretion syste 99.0 9.4E-11 3.2E-15 102.1 3.8 57 79-137 173-231 (361)
109 1in4_A RUVB, holliday junction 99.0 6.3E-12 2.1E-16 107.8 -3.8 106 82-188 52-173 (334)
110 1tf7_A KAIC; homohexamer, hexa 99.0 2E-10 6.9E-15 104.2 5.5 84 79-188 279-364 (525)
111 1sq5_A Pantothenate kinase; P- 99.0 2.4E-10 8.2E-15 97.1 4.2 53 79-136 78-136 (308)
112 2eyu_A Twitching motility prot 99.0 1.9E-10 6.6E-15 96.1 3.0 48 71-119 16-65 (261)
113 1pui_A ENGB, probable GTP-bind 99.0 7.5E-11 2.5E-15 92.8 0.2 35 79-113 24-64 (210)
114 1nlf_A Regulatory protein REPA 99.0 6.2E-10 2.1E-14 92.7 5.7 95 79-187 28-128 (279)
115 1cr0_A DNA primase/helicase; R 99.0 5.2E-10 1.8E-14 93.6 5.2 61 71-134 24-87 (296)
116 3lnc_A Guanylate kinase, GMP k 98.9 3.3E-10 1.1E-14 91.6 3.1 27 80-106 26-53 (231)
117 1lvg_A Guanylate kinase, GMP k 98.9 3.3E-10 1.1E-14 90.3 2.7 27 80-106 3-29 (198)
118 4e22_A Cytidylate kinase; P-lo 98.9 2.1E-10 7.2E-15 94.7 1.6 60 78-137 24-96 (252)
119 3a00_A Guanylate kinase, GMP k 98.9 6.3E-10 2.2E-14 87.3 3.1 28 81-108 1-28 (186)
120 2kjq_A DNAA-related protein; s 98.9 9.8E-10 3.4E-14 84.2 3.9 40 80-119 35-76 (149)
121 3szr_A Interferon-induced GTP- 98.9 1.2E-10 4.1E-15 107.8 -2.3 55 83-137 47-106 (608)
122 1iy2_A ATP-dependent metallopr 98.9 2E-10 7E-15 95.4 -0.7 53 84-137 76-128 (278)
123 1n0w_A DNA repair protein RAD5 98.8 2.3E-09 8E-14 86.0 5.0 60 78-137 21-89 (243)
124 2ewv_A Twitching motility prot 98.8 9E-10 3.1E-14 96.3 2.5 54 78-135 133-188 (372)
125 1ixz_A ATP-dependent metallopr 98.8 1.8E-10 6E-15 94.2 -2.0 53 84-137 52-104 (254)
126 3qf7_A RAD50; ABC-ATPase, ATPa 98.8 8E-10 2.7E-14 96.3 1.9 30 74-105 18-47 (365)
127 2w0m_A SSO2452; RECA, SSPF, un 98.8 1.3E-09 4.6E-14 86.4 2.9 59 78-136 20-79 (235)
128 1lw7_A Transcriptional regulat 98.8 5.9E-10 2E-14 96.5 0.5 56 81-138 170-234 (365)
129 2bbw_A Adenylate kinase 4, AK4 98.8 4.3E-10 1.5E-14 91.9 -0.5 39 80-118 26-68 (246)
130 3lda_A DNA repair protein RAD5 98.8 3.5E-09 1.2E-13 93.7 5.2 108 78-185 175-301 (400)
131 2j41_A Guanylate kinase; GMP, 98.8 3.6E-09 1.2E-13 83.0 4.1 56 79-138 4-61 (207)
132 2qag_B Septin-6, protein NEDD5 98.8 1.1E-09 3.8E-14 97.8 0.8 60 72-138 30-92 (427)
133 2bdt_A BH3686; alpha-beta prot 98.7 2.4E-09 8.3E-14 83.5 2.2 48 81-137 2-50 (189)
134 3uie_A Adenylyl-sulfate kinase 98.7 2.7E-09 9.2E-14 84.5 2.1 40 79-118 23-64 (200)
135 3cr8_A Sulfate adenylyltranfer 98.7 1.9E-09 6.4E-14 99.1 0.9 88 78-166 366-468 (552)
136 1odf_A YGR205W, hypothetical 3 98.7 2.4E-09 8.3E-14 90.7 1.0 31 79-109 29-59 (290)
137 2oap_1 GSPE-2, type II secreti 98.6 1.2E-08 4.3E-13 92.7 4.0 39 79-117 258-297 (511)
138 1kgd_A CASK, peripheral plasma 98.6 1.8E-08 6.1E-13 78.7 4.3 36 80-115 4-41 (180)
139 1rz3_A Hypothetical protein rb 98.6 1.5E-08 5.2E-13 80.4 3.9 42 79-120 20-62 (201)
140 2o8b_B DNA mismatch repair pro 98.6 4.1E-09 1.4E-13 102.9 0.2 36 70-106 770-813 (1022)
141 1knq_A Gluconate kinase; ALFA/ 98.6 2.9E-08 1E-12 76.3 5.0 53 79-136 6-59 (175)
142 3jvv_A Twitching mobility prot 98.6 1.3E-08 4.5E-13 88.6 2.9 42 77-118 119-162 (356)
143 3thx_B DNA mismatch repair pro 98.6 2.1E-09 7.1E-14 103.9 -2.6 35 70-104 661-696 (918)
144 1udx_A The GTP-binding protein 98.6 2.5E-09 8.6E-14 95.1 -2.7 32 74-105 149-181 (416)
145 1oix_A RAS-related protein RAB 98.6 2.2E-08 7.4E-13 78.3 2.5 36 82-117 30-77 (191)
146 2vp4_A Deoxynucleoside kinase; 98.5 3.8E-08 1.3E-12 79.7 3.8 57 79-138 18-84 (230)
147 1pzn_A RAD51, DNA repair and r 98.5 3.1E-08 1.1E-12 85.8 2.6 40 79-118 129-176 (349)
148 3ney_A 55 kDa erythrocyte memb 98.5 4.8E-08 1.7E-12 78.7 3.5 27 80-106 18-44 (197)
149 1cke_A CK, MSSA, protein (cyti 98.5 9.2E-09 3.1E-13 82.1 -0.8 56 81-136 5-73 (227)
150 3tau_A Guanylate kinase, GMP k 98.5 8.6E-08 2.9E-12 76.5 4.5 29 79-107 6-34 (208)
151 2px0_A Flagellar biosynthesis 98.5 1.2E-07 4E-12 80.5 5.3 47 75-121 99-147 (296)
152 3kta_A Chromosome segregation 98.5 9.1E-08 3.1E-12 73.9 3.8 29 82-110 27-56 (182)
153 1zu4_A FTSY; GTPase, signal re 98.4 1.5E-07 5E-12 80.8 4.9 63 74-136 97-171 (320)
154 2www_A Methylmalonic aciduria 98.4 1.1E-07 3.7E-12 82.3 3.9 41 80-120 73-114 (349)
155 3tqc_A Pantothenate kinase; bi 98.4 1.6E-07 5.5E-12 80.8 4.8 39 82-120 93-134 (321)
156 1ls1_A Signal recognition part 98.4 1.5E-07 5.3E-12 79.6 4.5 47 73-120 91-138 (295)
157 2dr3_A UPF0273 protein PH0284; 98.4 1.4E-07 4.7E-12 75.6 3.9 60 78-137 20-80 (247)
158 2pez_A Bifunctional 3'-phospho 98.4 1E-07 3.5E-12 73.7 2.7 40 79-118 3-44 (179)
159 1vma_A Cell division protein F 98.4 1.7E-07 5.8E-12 80.0 4.2 42 79-120 102-144 (306)
160 1ewq_A DNA mismatch repair pro 98.4 1.1E-07 3.8E-12 90.3 2.7 40 70-111 567-608 (765)
161 1wb9_A DNA mismatch repair pro 98.3 1.9E-07 6.6E-12 89.1 3.8 36 70-105 596-631 (800)
162 1kag_A SKI, shikimate kinase I 98.3 2.3E-07 7.9E-12 70.8 3.1 32 81-115 4-35 (173)
163 3ec2_A DNA replication protein 98.3 1.1E-07 3.6E-12 73.7 1.1 30 80-109 37-67 (180)
164 1sxj_E Activator 1 40 kDa subu 98.3 2.3E-07 7.7E-12 78.7 2.6 53 83-137 38-92 (354)
165 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 4.4E-07 1.5E-11 80.1 4.5 37 79-115 18-67 (392)
166 1sxj_C Activator 1 40 kDa subu 98.3 2E-07 6.8E-12 79.4 1.7 40 79-118 42-84 (340)
167 3vaa_A Shikimate kinase, SK; s 98.2 4.9E-07 1.7E-11 71.3 3.1 35 71-105 14-49 (199)
168 2cvh_A DNA repair and recombin 98.2 6.2E-07 2.1E-11 70.6 3.7 36 78-115 17-52 (220)
169 3m6a_A ATP-dependent protease 98.2 5.2E-07 1.8E-11 82.3 3.5 66 73-138 100-166 (543)
170 2f9l_A RAB11B, member RAS onco 98.2 4.1E-07 1.4E-11 71.1 2.1 24 82-105 6-29 (199)
171 2p67_A LAO/AO transport system 98.2 8.1E-07 2.8E-11 76.3 3.8 47 74-120 48-96 (341)
172 2qtf_A Protein HFLX, GTP-bindi 98.2 3.5E-07 1.2E-11 79.7 1.3 27 80-106 177-204 (364)
173 1w1w_A Structural maintenance 98.1 1.3E-06 4.4E-11 77.0 3.7 29 80-108 25-53 (430)
174 2qag_C Septin-7; cell cycle, c 98.1 1.2E-06 4.1E-11 77.9 2.9 33 71-108 26-58 (418)
175 3thx_A DNA mismatch repair pro 98.1 1.4E-06 5E-11 84.3 3.6 39 70-108 650-697 (934)
176 2yvu_A Probable adenylyl-sulfa 98.1 1.8E-06 6.1E-11 67.0 3.4 39 76-114 8-47 (186)
177 2qt1_A Nicotinamide riboside k 98.1 1.8E-06 6.3E-11 68.0 3.5 27 80-106 20-46 (207)
178 3hr8_A Protein RECA; alpha and 98.1 2E-06 7E-11 74.9 4.0 57 78-136 58-115 (356)
179 2ffh_A Protein (FFH); SRP54, s 98.1 3.2E-06 1.1E-10 75.3 5.2 46 74-120 92-138 (425)
180 1j8m_F SRP54, signal recogniti 98.0 3.4E-06 1.2E-10 71.5 3.9 47 75-121 92-139 (297)
181 3k1j_A LON protease, ATP-depen 98.0 5.3E-06 1.8E-10 76.4 5.2 54 79-137 58-113 (604)
182 2o5v_A DNA replication and rep 98.0 6.3E-06 2.1E-10 71.8 5.3 30 74-103 19-48 (359)
183 1jjv_A Dephospho-COA kinase; P 98.0 3.8E-06 1.3E-10 66.0 3.3 22 83-104 4-25 (206)
184 3t61_A Gluconokinase; PSI-biol 97.9 4.9E-06 1.7E-10 65.3 3.7 35 81-118 18-52 (202)
185 2r6a_A DNAB helicase, replicat 97.9 8.7E-06 3E-10 72.4 5.8 41 78-118 200-242 (454)
186 4eaq_A DTMP kinase, thymidylat 97.9 9E-06 3.1E-10 66.1 5.3 35 79-113 24-58 (229)
187 1m7g_A Adenylylsulfate kinase; 97.9 2.6E-06 8.9E-11 67.6 2.1 39 78-116 22-63 (211)
188 2dy1_A Elongation factor G; tr 97.9 3.7E-06 1.3E-10 78.5 3.2 58 79-137 7-67 (665)
189 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 5.6E-06 1.9E-10 63.0 3.3 25 81-105 23-47 (149)
190 2dhr_A FTSH; AAA+ protein, hex 97.9 7.6E-06 2.6E-10 74.2 4.7 53 84-137 67-119 (499)
191 2if2_A Dephospho-COA kinase; a 97.9 5.7E-06 2E-10 64.8 3.1 21 83-103 3-23 (204)
192 2qor_A Guanylate kinase; phosp 97.9 6.1E-06 2.1E-10 65.1 3.2 27 80-106 11-37 (204)
193 1svm_A Large T antigen; AAA+ f 97.9 6.7E-06 2.3E-10 72.1 3.4 52 79-137 167-218 (377)
194 2ius_A DNA translocase FTSK; n 97.9 3.9E-06 1.3E-10 76.4 1.9 106 75-185 162-276 (512)
195 3kl4_A SRP54, signal recogniti 97.8 8.2E-06 2.8E-10 72.8 3.6 44 78-121 94-138 (433)
196 1mky_A Probable GTP-binding pr 97.8 5.1E-06 1.7E-10 73.5 1.5 37 82-118 181-230 (439)
197 2gj8_A MNME, tRNA modification 97.8 1.1E-05 3.9E-10 61.6 3.1 26 80-105 3-28 (172)
198 3nwj_A ATSK2; P loop, shikimat 97.8 9.5E-06 3.2E-10 67.2 2.7 36 71-106 34-73 (250)
199 1np6_A Molybdopterin-guanine d 97.8 1.4E-05 4.9E-10 62.7 3.6 27 82-108 7-33 (174)
200 4ad8_A DNA repair protein RECN 97.8 7.2E-06 2.5E-10 74.0 2.0 31 74-104 53-83 (517)
201 1ypw_A Transitional endoplasmi 97.8 9.3E-06 3.2E-10 77.4 2.7 59 79-138 236-294 (806)
202 3qkt_A DNA double-strand break 97.7 1.9E-05 6.5E-10 67.5 3.5 23 81-103 23-45 (339)
203 2wji_A Ferrous iron transport 97.7 2E-05 6.9E-10 59.5 3.2 24 82-105 4-27 (165)
204 3qks_A DNA double-strand break 97.7 2.3E-05 7.8E-10 62.5 3.3 28 75-104 19-46 (203)
205 2zr9_A Protein RECA, recombina 97.7 3E-05 1E-09 67.0 4.4 54 79-134 59-113 (349)
206 3cm0_A Adenylate kinase; ATP-b 97.7 2E-05 6.9E-10 60.5 2.9 25 80-104 3-27 (186)
207 3kb2_A SPBC2 prophage-derived 97.6 2.2E-05 7.5E-10 59.2 2.8 24 83-106 3-26 (173)
208 1q3t_A Cytidylate kinase; nucl 97.6 2.6E-05 8.9E-10 62.9 3.3 25 80-104 15-39 (236)
209 2ohf_A Protein OLA1, GTP-bindi 97.6 3.3E-05 1.1E-09 68.2 3.8 26 79-104 20-45 (396)
210 1xjc_A MOBB protein homolog; s 97.6 3.5E-05 1.2E-09 60.4 3.5 34 82-115 5-39 (169)
211 1lv7_A FTSH; alpha/beta domain 97.6 2E-05 6.9E-10 64.0 2.2 35 83-118 47-81 (257)
212 2wjg_A FEOB, ferrous iron tran 97.6 3.4E-05 1.2E-09 58.8 3.3 23 82-104 8-30 (188)
213 2zej_A Dardarin, leucine-rich 97.6 3.6E-05 1.2E-09 59.1 3.0 23 83-105 4-26 (184)
214 2plr_A DTMP kinase, probable t 97.5 7.5E-05 2.6E-09 58.1 4.8 34 80-113 3-36 (213)
215 1ega_A Protein (GTP-binding pr 97.5 2.9E-05 1E-09 65.4 2.4 26 80-105 7-32 (301)
216 1gtv_A TMK, thymidylate kinase 97.5 1.8E-05 6.2E-10 62.0 1.0 26 83-108 2-27 (214)
217 1qhx_A CPT, protein (chloramph 97.5 4.9E-05 1.7E-09 57.9 3.4 26 81-106 3-28 (178)
218 3lw7_A Adenylate kinase relate 97.5 4.4E-05 1.5E-09 57.1 3.1 19 83-101 3-21 (179)
219 2p5t_B PEZT; postsegregational 97.5 4.5E-05 1.5E-09 62.3 3.2 38 79-117 30-67 (253)
220 1kht_A Adenylate kinase; phosp 97.5 6E-05 2E-09 57.7 3.5 26 81-106 3-28 (192)
221 2jaq_A Deoxyguanosine kinase; 97.5 4.8E-05 1.6E-09 58.9 2.9 23 83-105 2-24 (205)
222 3t34_A Dynamin-related protein 97.5 7.7E-05 2.6E-09 64.0 4.2 38 72-111 27-67 (360)
223 1vht_A Dephospho-COA kinase; s 97.5 7.2E-05 2.5E-09 59.2 3.6 23 81-103 4-26 (218)
224 1uf9_A TT1252 protein; P-loop, 97.5 9.1E-05 3.1E-09 57.4 4.1 25 80-104 7-31 (203)
225 2v54_A DTMP kinase, thymidylat 97.5 8.6E-05 3E-09 57.6 3.9 26 80-105 3-28 (204)
226 1y63_A LMAJ004144AAA protein; 97.4 7.9E-05 2.7E-09 57.8 3.6 25 80-104 9-33 (184)
227 4ag6_A VIRB4 ATPase, type IV s 97.4 9.3E-05 3.2E-09 64.1 4.2 37 80-116 34-71 (392)
228 2rhm_A Putative kinase; P-loop 97.4 7.6E-05 2.6E-09 57.4 3.3 26 80-105 4-29 (193)
229 1via_A Shikimate kinase; struc 97.4 5.5E-05 1.9E-09 57.9 2.4 23 83-105 6-28 (175)
230 1ly1_A Polynucleotide kinase; 97.4 7.9E-05 2.7E-09 56.5 3.3 22 82-103 3-24 (181)
231 3lxx_A GTPase IMAP family memb 97.4 0.00011 3.8E-09 59.0 3.8 26 82-107 30-55 (239)
232 1m2o_B GTP-binding protein SAR 97.4 9.7E-05 3.3E-09 57.1 3.1 31 73-103 15-45 (190)
233 4fcw_A Chaperone protein CLPB; 97.3 0.00015 5.2E-09 59.9 4.3 35 81-115 47-82 (311)
234 2c95_A Adenylate kinase 1; tra 97.3 0.00012 4.1E-09 56.4 3.5 26 80-105 8-33 (196)
235 2z0h_A DTMP kinase, thymidylat 97.3 0.00016 5.3E-09 55.8 4.1 27 83-109 2-28 (197)
236 2ze6_A Isopentenyl transferase 97.3 9.3E-05 3.2E-09 60.7 3.0 24 83-106 3-26 (253)
237 1tev_A UMP-CMP kinase; ploop, 97.3 0.00012 4E-09 56.1 3.3 25 81-105 3-27 (196)
238 3iij_A Coilin-interacting nucl 97.3 0.00012 4.1E-09 56.1 3.3 26 80-105 10-35 (180)
239 2wwf_A Thymidilate kinase, put 97.3 0.00012 4.2E-09 57.1 3.4 27 80-106 9-35 (212)
240 2b6h_A ADP-ribosylation factor 97.3 0.00012 4.2E-09 56.6 3.4 28 76-103 24-51 (192)
241 3k53_A Ferrous iron transport 97.3 0.00011 3.6E-09 60.5 3.1 24 83-106 5-28 (271)
242 1nn5_A Similar to deoxythymidy 97.3 0.00013 4.5E-09 56.9 3.5 27 80-106 8-34 (215)
243 2lkc_A Translation initiation 97.3 0.0002 6.7E-09 53.7 4.2 27 78-104 5-31 (178)
244 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.3E-09 56.0 3.1 25 81-105 5-29 (185)
245 1nks_A Adenylate kinase; therm 97.3 0.00012 4.2E-09 55.9 3.0 25 83-107 3-27 (194)
246 3ake_A Cytidylate kinase; CMP 97.3 0.00012 4.1E-09 56.9 2.8 23 83-105 4-26 (208)
247 2cdn_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 56.0 3.8 26 80-105 19-44 (201)
248 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.5E-09 57.8 2.9 23 83-105 3-25 (186)
249 3auy_A DNA double-strand break 97.3 0.00012 4.1E-09 63.3 2.9 27 74-102 20-46 (371)
250 3r20_A Cytidylate kinase; stru 97.2 0.00014 4.6E-09 59.8 2.9 25 81-105 9-33 (233)
251 1f6b_A SAR1; gtpases, N-termin 97.2 6.1E-05 2.1E-09 58.7 0.7 31 73-103 17-47 (198)
252 1jal_A YCHF protein; nucleotid 97.2 0.00021 7.2E-09 62.3 4.2 23 81-103 2-24 (363)
253 3dm5_A SRP54, signal recogniti 97.2 0.00031 1E-08 62.9 5.3 43 79-121 98-141 (443)
254 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.7E-09 56.8 3.7 27 79-105 2-28 (220)
255 2w58_A DNAI, primosome compone 97.2 0.00026 8.9E-09 55.1 4.3 32 82-113 55-87 (202)
256 2vli_A Antibiotic resistance p 97.2 0.00013 4.3E-09 55.7 2.3 26 80-105 4-29 (183)
257 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00015 5.3E-09 63.2 3.0 28 79-106 20-49 (359)
258 3bos_A Putative DNA replicatio 97.2 0.00022 7.5E-09 56.0 3.7 27 80-106 51-77 (242)
259 2pbr_A DTMP kinase, thymidylat 97.2 0.00016 5.5E-09 55.4 2.8 25 83-107 2-26 (195)
260 2p5s_A RAS and EF-hand domain 97.2 0.00019 6.7E-09 55.5 3.3 25 81-105 28-52 (199)
261 2wsm_A Hydrogenase expression/ 97.2 0.00032 1.1E-08 55.0 4.5 37 82-118 31-67 (221)
262 2ged_A SR-beta, signal recogni 97.2 0.00021 7.1E-09 54.6 3.3 25 81-105 48-72 (193)
263 2bwj_A Adenylate kinase 5; pho 97.2 0.00021 7.1E-09 55.1 3.2 25 81-105 12-36 (199)
264 1gvn_B Zeta; postsegregational 97.2 0.00018 6.3E-09 60.2 3.0 34 80-114 32-65 (287)
265 1z2a_A RAS-related protein RAB 97.2 0.00021 7.2E-09 52.8 3.0 23 83-105 7-29 (168)
266 2nzj_A GTP-binding protein REM 97.2 0.00021 7.3E-09 53.3 3.0 23 83-105 6-28 (175)
267 1kao_A RAP2A; GTP-binding prot 97.1 0.00023 7.8E-09 52.4 3.1 22 83-104 5-26 (167)
268 3fb4_A Adenylate kinase; psych 97.1 0.00023 7.8E-09 56.0 3.2 23 83-105 2-24 (216)
269 1fnn_A CDC6P, cell division co 97.1 0.00025 8.4E-09 60.0 3.6 29 80-108 41-71 (389)
270 2erx_A GTP-binding protein DI- 97.1 0.00024 8.1E-09 52.6 3.1 23 82-104 4-26 (172)
271 1u8z_A RAS-related protein RAL 97.1 0.00024 8.2E-09 52.3 3.0 22 83-104 6-27 (168)
272 1moz_A ARL1, ADP-ribosylation 97.1 0.00015 5.1E-09 54.8 1.9 25 79-103 16-40 (183)
273 1zd8_A GTP:AMP phosphotransfer 97.1 0.00025 8.5E-09 56.5 3.3 26 80-105 6-31 (227)
274 2qby_A CDC6 homolog 1, cell di 97.1 0.00019 6.5E-09 60.3 2.7 29 79-107 43-71 (386)
275 2ce2_X GTPase HRAS; signaling 97.1 0.00023 7.7E-09 52.2 2.8 23 83-105 5-27 (166)
276 2dyk_A GTP-binding protein; GT 97.1 0.00028 9.6E-09 51.9 3.3 23 83-105 3-25 (161)
277 3cf0_A Transitional endoplasmi 97.1 0.00028 9.5E-09 59.0 3.6 36 79-115 47-82 (301)
278 1qf9_A UMP/CMP kinase, protein 97.1 0.00024 8.2E-09 54.2 3.0 25 81-105 6-30 (194)
279 3lv8_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 57.3 4.1 29 80-108 26-54 (236)
280 1z0j_A RAB-22, RAS-related pro 97.1 0.00026 8.9E-09 52.4 3.1 23 83-105 8-30 (170)
281 4gzl_A RAS-related C3 botulinu 97.1 0.00025 8.5E-09 55.4 3.0 31 74-104 23-53 (204)
282 1e6c_A Shikimate kinase; phosp 97.1 0.00024 8.1E-09 53.7 2.8 24 82-105 3-26 (173)
283 2qag_A Septin-2, protein NEDD5 97.1 0.00019 6.5E-09 62.1 2.5 24 83-106 39-62 (361)
284 3b1v_A Ferrous iron uptake tra 97.1 0.00025 8.7E-09 59.0 3.2 24 82-105 4-27 (272)
285 3q72_A GTP-binding protein RAD 97.1 0.00019 6.4E-09 53.2 2.2 23 83-105 4-26 (166)
286 3dl0_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 55.6 3.2 23 83-105 2-24 (216)
287 3p32_A Probable GTPase RV1496/ 97.1 0.0004 1.4E-08 59.6 4.5 39 80-118 78-117 (355)
288 1z08_A RAS-related protein RAB 97.1 0.00027 9.4E-09 52.4 3.0 22 83-104 8-29 (170)
289 3q85_A GTP-binding protein REM 97.1 0.00026 9E-09 52.6 2.9 23 83-105 4-26 (169)
290 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00028 9.5E-09 52.8 3.1 23 83-105 9-31 (177)
291 1c1y_A RAS-related protein RAP 97.1 0.00028 9.4E-09 52.1 3.0 22 83-104 5-26 (167)
292 1ek0_A Protein (GTP-binding pr 97.1 0.00028 9.5E-09 52.2 3.0 23 83-105 5-27 (170)
293 3th5_A RAS-related C3 botulinu 96.2 8E-05 2.7E-09 57.8 0.0 30 75-104 24-53 (204)
294 1ky3_A GTP-binding protein YPT 97.1 0.00028 9.6E-09 52.8 3.1 24 82-105 9-32 (182)
295 2pt5_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 52.9 3.2 23 83-105 2-24 (168)
296 1g16_A RAS-related protein SEC 97.1 0.00026 8.8E-09 52.4 2.8 23 83-105 5-27 (170)
297 1ukz_A Uridylate kinase; trans 97.1 0.00033 1.1E-08 54.5 3.5 25 81-105 15-39 (203)
298 2atv_A RERG, RAS-like estrogen 97.1 0.00035 1.2E-08 53.8 3.5 24 81-104 28-51 (196)
299 1zuh_A Shikimate kinase; alpha 97.1 0.00034 1.2E-08 52.9 3.4 24 82-105 8-31 (168)
300 3clv_A RAB5 protein, putative; 97.1 0.0003 1E-08 53.3 3.1 23 82-104 8-30 (208)
301 3ice_A Transcription terminati 97.1 0.00046 1.6E-08 61.2 4.6 28 79-106 172-199 (422)
302 2qmh_A HPR kinase/phosphorylas 97.1 0.00029 9.9E-09 57.0 3.0 32 74-105 27-58 (205)
303 3tw8_B RAS-related protein RAB 97.1 0.00024 8.3E-09 53.1 2.4 24 82-105 10-33 (181)
304 2vf7_A UVRA2, excinuclease ABC 97.1 4E-05 1.4E-09 73.5 -2.4 99 90-189 271-391 (842)
305 1zak_A Adenylate kinase; ATP:A 97.0 0.00029 1E-08 55.8 3.0 26 80-105 4-29 (222)
306 1r2q_A RAS-related protein RAB 97.0 0.00032 1.1E-08 51.8 3.0 22 83-104 8-29 (170)
307 2fn4_A P23, RAS-related protei 97.0 0.0003 1E-08 52.6 2.8 23 82-104 10-32 (181)
308 2iyv_A Shikimate kinase, SK; t 97.0 0.00026 8.7E-09 54.3 2.5 24 82-105 3-26 (184)
309 1svi_A GTP-binding protein YSX 97.0 0.0003 1E-08 53.7 2.8 25 81-105 23-47 (195)
310 1ypw_A Transitional endoplasmi 97.0 8.5E-05 2.9E-09 70.8 -0.4 39 80-119 510-548 (806)
311 3pqc_A Probable GTP-binding pr 97.0 0.00031 1E-08 53.3 2.8 24 82-105 24-47 (195)
312 3bc1_A RAS-related protein RAB 97.0 0.00033 1.1E-08 52.9 3.0 23 82-104 12-34 (195)
313 3c5c_A RAS-like protein 12; GD 97.0 0.00033 1.1E-08 53.8 3.0 23 82-104 22-44 (187)
314 1fzq_A ADP-ribosylation factor 97.0 0.00027 9.2E-09 54.0 2.4 25 80-104 15-39 (181)
315 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00036 1.2E-08 52.7 3.1 23 83-105 6-28 (189)
316 3pih_A Uvrabc system protein A 97.0 2.9E-05 9.9E-10 75.1 -3.9 89 96-189 383-476 (916)
317 4edh_A DTMP kinase, thymidylat 97.0 0.00068 2.3E-08 54.5 4.8 34 80-113 5-39 (213)
318 2oil_A CATX-8, RAS-related pro 97.0 0.00035 1.2E-08 53.4 3.0 23 82-104 26-48 (193)
319 1upt_A ARL1, ADP-ribosylation 97.0 0.00036 1.2E-08 51.8 3.0 23 82-104 8-30 (171)
320 3t1o_A Gliding protein MGLA; G 97.0 0.00036 1.2E-08 52.9 3.1 25 82-106 15-39 (198)
321 2hf9_A Probable hydrogenase ni 97.0 0.00054 1.8E-08 53.9 4.1 26 81-106 38-63 (226)
322 3b9p_A CG5977-PA, isoform A; A 97.0 0.00046 1.6E-08 56.8 3.9 28 79-106 52-79 (297)
323 2hxs_A RAB-26, RAS-related pro 97.0 0.00039 1.3E-08 52.1 3.2 24 82-105 7-30 (178)
324 2cxx_A Probable GTP-binding pr 97.0 0.0003 1E-08 53.3 2.5 23 83-105 3-25 (190)
325 3cbq_A GTP-binding protein REM 97.0 0.00026 8.8E-09 55.1 2.2 23 82-104 24-46 (195)
326 2j1l_A RHO-related GTP-binding 97.0 0.00033 1.1E-08 55.1 2.8 23 82-104 35-57 (214)
327 3lxw_A GTPase IMAP family memb 97.0 0.0004 1.4E-08 56.6 3.3 24 82-105 22-45 (247)
328 2a9k_A RAS-related protein RAL 97.0 0.00039 1.3E-08 52.3 3.0 23 82-104 19-41 (187)
329 2il1_A RAB12; G-protein, GDP, 97.0 0.00031 1.1E-08 54.1 2.4 24 82-105 27-50 (192)
330 3be4_A Adenylate kinase; malar 97.0 0.00041 1.4E-08 55.1 3.2 26 80-105 4-29 (217)
331 3iev_A GTP-binding protein ERA 97.0 0.0004 1.4E-08 58.5 3.3 23 82-104 11-33 (308)
332 1r8s_A ADP-ribosylation factor 97.0 0.00042 1.4E-08 51.2 3.0 22 83-104 2-23 (164)
333 2y8e_A RAB-protein 6, GH09086P 97.0 0.00038 1.3E-08 52.0 2.8 23 82-104 15-37 (179)
334 1z0f_A RAB14, member RAS oncog 97.0 0.00041 1.4E-08 51.7 3.0 24 82-105 16-39 (179)
335 1ksh_A ARF-like protein 2; sma 97.0 0.00043 1.5E-08 52.5 3.1 27 79-105 16-42 (186)
336 2g6b_A RAS-related protein RAB 97.0 0.00042 1.5E-08 52.0 3.0 24 82-105 11-34 (180)
337 1wf3_A GTP-binding protein; GT 96.9 0.00043 1.5E-08 58.4 3.3 23 82-104 8-30 (301)
338 3tlx_A Adenylate kinase 2; str 96.9 0.0005 1.7E-08 55.8 3.6 26 80-105 28-53 (243)
339 3v9p_A DTMP kinase, thymidylat 96.9 0.0003 1E-08 57.4 2.2 28 80-107 24-51 (227)
340 1uj2_A Uridine-cytidine kinase 96.9 0.00041 1.4E-08 56.4 3.0 24 82-105 23-46 (252)
341 2efe_B Small GTP-binding prote 96.9 0.00045 1.5E-08 51.9 3.0 24 82-105 13-36 (181)
342 1zj6_A ADP-ribosylation factor 96.9 0.00047 1.6E-08 52.6 3.2 28 77-104 12-39 (187)
343 1jbk_A CLPB protein; beta barr 96.9 0.0005 1.7E-08 51.5 3.3 26 81-106 43-68 (195)
344 2xb4_A Adenylate kinase; ATP-b 96.9 0.00047 1.6E-08 55.1 3.2 23 83-105 2-24 (223)
345 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00049 1.7E-08 56.4 3.4 26 81-106 4-29 (260)
346 1l8q_A Chromosomal replication 96.9 0.00044 1.5E-08 57.9 3.2 28 81-108 37-64 (324)
347 3con_A GTPase NRAS; structural 96.9 0.00045 1.5E-08 52.6 3.0 24 82-105 22-45 (190)
348 2e87_A Hypothetical protein PH 96.9 0.00043 1.5E-08 59.4 3.1 26 80-105 166-191 (357)
349 1nrj_B SR-beta, signal recogni 96.9 0.00052 1.8E-08 53.6 3.2 24 82-105 13-36 (218)
350 2bme_A RAB4A, RAS-related prot 96.9 0.00045 1.5E-08 52.2 2.8 24 82-105 11-34 (186)
351 3iby_A Ferrous iron transport 96.9 0.00046 1.6E-08 56.7 3.0 23 83-105 3-25 (256)
352 3tkl_A RAS-related protein RAB 96.9 0.0005 1.7E-08 52.4 3.0 24 82-105 17-40 (196)
353 3llm_A ATP-dependent RNA helic 96.9 0.00058 2E-08 54.8 3.5 24 80-103 75-98 (235)
354 1vg8_A RAS-related protein RAB 96.9 0.00051 1.8E-08 52.9 3.1 24 82-105 9-32 (207)
355 4tmk_A Protein (thymidylate ki 96.9 0.00077 2.6E-08 54.3 4.2 30 80-109 2-31 (213)
356 2bov_A RAla, RAS-related prote 96.9 0.00051 1.8E-08 52.7 3.0 23 82-104 15-37 (206)
357 1ak2_A Adenylate kinase isoenz 96.9 0.00066 2.3E-08 54.4 3.8 29 77-105 12-40 (233)
358 3ihw_A Centg3; RAS, centaurin, 96.9 0.00052 1.8E-08 52.7 3.0 23 82-104 21-43 (184)
359 2gf9_A RAS-related protein RAB 96.9 0.00052 1.8E-08 52.4 3.0 23 83-105 24-46 (189)
360 3kkq_A RAS-related protein M-R 96.9 0.00055 1.9E-08 51.7 3.0 23 82-104 19-41 (183)
361 3q3j_B RHO-related GTP-binding 96.9 0.00058 2E-08 53.8 3.3 24 81-104 27-50 (214)
362 2gf0_A GTP-binding protein DI- 96.9 0.00051 1.7E-08 52.5 2.8 23 82-104 9-31 (199)
363 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.00056 1.9E-08 51.4 3.0 23 82-104 6-28 (186)
364 2grj_A Dephospho-COA kinase; T 96.9 0.00058 2E-08 54.0 3.2 24 82-105 13-36 (192)
365 2dby_A GTP-binding protein; GD 96.9 0.0005 1.7E-08 59.9 3.1 22 83-104 3-24 (368)
366 2fg5_A RAB-22B, RAS-related pr 96.9 0.00052 1.8E-08 52.7 2.8 24 82-105 24-47 (192)
367 2xtp_A GTPase IMAP family memb 96.9 0.00054 1.8E-08 55.5 3.0 24 82-105 23-46 (260)
368 1e4v_A Adenylate kinase; trans 96.9 0.00054 1.8E-08 54.1 3.0 23 83-105 2-24 (214)
369 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00052 1.8E-08 52.3 2.8 23 82-104 8-30 (184)
370 4dhe_A Probable GTP-binding pr 96.8 0.00036 1.2E-08 54.6 1.9 24 82-105 30-53 (223)
371 4a1f_A DNAB helicase, replicat 96.8 0.002 6.9E-08 55.5 6.7 41 78-118 43-84 (338)
372 2z43_A DNA repair and recombin 96.8 0.00076 2.6E-08 57.1 3.9 27 78-104 104-130 (324)
373 1z06_A RAS-related protein RAB 96.8 0.00062 2.1E-08 51.9 3.1 23 82-104 21-43 (189)
374 3umf_A Adenylate kinase; rossm 96.8 0.00069 2.3E-08 54.9 3.4 26 80-105 28-53 (217)
375 1v5w_A DMC1, meiotic recombina 96.8 0.0011 3.8E-08 56.7 5.0 27 78-104 119-145 (343)
376 1zbd_A Rabphilin-3A; G protein 96.8 0.00062 2.1E-08 52.5 3.0 23 83-105 10-32 (203)
377 1x3s_A RAS-related protein RAB 96.8 0.00063 2.2E-08 51.6 3.0 24 82-105 16-39 (195)
378 3a1s_A Iron(II) transport prot 96.8 0.00066 2.2E-08 55.8 3.3 24 82-105 6-29 (258)
379 3t5g_A GTP-binding protein RHE 96.8 0.00059 2E-08 51.4 2.8 22 82-103 7-28 (181)
380 2orw_A Thymidine kinase; TMTK, 96.8 0.00083 2.8E-08 52.6 3.7 25 80-104 2-27 (184)
381 2cjw_A GTP-binding protein GEM 96.8 0.00063 2.2E-08 52.7 3.0 22 82-103 7-28 (192)
382 2gco_A H9, RHO-related GTP-bin 96.8 0.00075 2.6E-08 52.3 3.5 23 82-104 26-48 (201)
383 3bwd_D RAC-like GTP-binding pr 96.8 0.00067 2.3E-08 50.9 3.0 24 81-104 8-31 (182)
384 3oes_A GTPase rhebl1; small GT 96.8 0.0006 2E-08 52.8 2.8 24 82-105 25-48 (201)
385 2a5j_A RAS-related protein RAB 96.8 0.00066 2.3E-08 52.0 3.0 24 82-105 22-45 (191)
386 1a7j_A Phosphoribulokinase; tr 96.8 0.00031 1.1E-08 59.0 1.2 27 80-106 4-30 (290)
387 1njg_A DNA polymerase III subu 96.8 0.0006 2.1E-08 52.8 2.8 25 82-106 46-70 (250)
388 3dz8_A RAS-related protein RAB 96.8 0.00062 2.1E-08 52.2 2.8 24 82-105 24-47 (191)
389 1zd9_A ADP-ribosylation factor 96.8 0.00068 2.3E-08 51.9 3.0 23 82-104 23-45 (188)
390 2f6r_A COA synthase, bifunctio 96.8 0.00062 2.1E-08 56.7 3.0 23 81-103 75-97 (281)
391 1jwy_B Dynamin A GTPase domain 96.8 0.00065 2.2E-08 56.4 3.1 24 82-105 25-48 (315)
392 3cph_A RAS-related protein SEC 96.8 0.0007 2.4E-08 52.3 3.0 24 81-104 20-43 (213)
393 3i8s_A Ferrous iron transport 96.8 0.00068 2.3E-08 56.1 3.1 24 82-105 4-27 (274)
394 2iwr_A Centaurin gamma 1; ANK 96.8 0.0006 2E-08 51.2 2.5 23 82-104 8-30 (178)
395 3reg_A RHO-like small GTPase; 96.8 0.00073 2.5E-08 51.8 3.0 24 82-105 24-47 (194)
396 2p65_A Hypothetical protein PF 96.8 0.00067 2.3E-08 50.9 2.7 27 81-107 43-69 (187)
397 1ltq_A Polynucleotide kinase; 96.8 0.00075 2.6E-08 55.7 3.3 22 82-103 3-24 (301)
398 2h92_A Cytidylate kinase; ross 96.7 0.00071 2.4E-08 53.2 2.9 25 81-105 3-27 (219)
399 2bcg_Y Protein YP2, GTP-bindin 96.7 0.0007 2.4E-08 52.4 2.8 24 82-105 9-32 (206)
400 2f7s_A C25KG, RAS-related prot 96.7 0.00076 2.6E-08 52.6 3.0 24 82-105 26-49 (217)
401 3t5d_A Septin-7; GTP-binding p 96.7 0.00056 1.9E-08 56.3 2.3 23 82-104 9-31 (274)
402 2v3c_C SRP54, signal recogniti 96.7 0.00055 1.9E-08 60.9 2.4 39 81-119 99-138 (432)
403 2ew1_A RAS-related protein RAB 96.7 0.00071 2.4E-08 53.0 2.8 24 82-105 27-50 (201)
404 2o52_A RAS-related protein RAB 96.7 0.0007 2.4E-08 52.5 2.7 23 82-104 26-48 (200)
405 4bas_A ADP-ribosylation factor 96.7 0.00072 2.5E-08 51.6 2.7 23 82-104 18-40 (199)
406 3h4m_A Proteasome-activating n 96.7 0.00092 3.2E-08 54.6 3.5 27 80-106 50-76 (285)
407 3sr0_A Adenylate kinase; phosp 96.7 0.00085 2.9E-08 53.7 3.2 23 83-105 2-24 (206)
408 1yrb_A ATP(GTP)binding protein 96.7 0.0015 5E-08 52.6 4.6 38 81-119 14-52 (262)
409 2qu8_A Putative nucleolar GTP- 96.7 0.00088 3E-08 53.1 3.3 24 81-104 29-52 (228)
410 2h17_A ADP-ribosylation factor 96.7 0.00064 2.2E-08 51.6 2.3 23 82-104 22-44 (181)
411 3ld9_A DTMP kinase, thymidylat 96.7 0.00085 2.9E-08 54.6 3.1 28 80-107 20-47 (223)
412 2h57_A ADP-ribosylation factor 96.7 0.00053 1.8E-08 52.4 1.8 25 81-105 21-45 (190)
413 2fv8_A H6, RHO-related GTP-bin 96.7 0.0008 2.7E-08 52.3 2.8 23 82-104 26-48 (207)
414 2q3h_A RAS homolog gene family 96.7 0.00089 3E-08 51.5 2.9 24 81-104 20-43 (201)
415 2fh5_B SR-beta, signal recogni 96.7 0.001 3.4E-08 51.8 3.2 25 81-105 7-31 (214)
416 3a8t_A Adenylate isopentenyltr 96.7 0.0011 3.9E-08 57.3 3.8 27 80-106 39-65 (339)
417 3n70_A Transport activator; si 96.7 0.0024 8.3E-08 47.4 5.2 39 80-118 23-62 (145)
418 2ocp_A DGK, deoxyguanosine kin 96.7 0.00095 3.2E-08 53.7 3.1 26 81-106 2-27 (241)
419 1gwn_A RHO-related GTP-binding 96.7 0.00086 2.9E-08 52.6 2.8 24 82-105 29-52 (205)
420 2aka_B Dynamin-1; fusion prote 96.6 0.00089 3E-08 55.0 2.8 24 82-105 27-50 (299)
421 2fu5_C RAS-related protein RAB 96.6 0.00059 2E-08 51.5 1.6 23 82-104 9-31 (183)
422 3llu_A RAS-related GTP-binding 96.6 0.001 3.4E-08 51.4 2.8 25 81-105 20-44 (196)
423 3zvl_A Bifunctional polynucleo 96.6 0.0013 4.3E-08 57.9 3.7 27 79-105 256-282 (416)
424 2atx_A Small GTP binding prote 96.6 0.0011 3.7E-08 50.7 2.8 23 82-104 19-41 (194)
425 3cnl_A YLQF, putative uncharac 96.6 0.0013 4.3E-08 54.5 3.3 25 82-106 100-124 (262)
426 2hup_A RAS-related protein RAB 96.5 0.0012 4.1E-08 51.3 2.8 24 82-105 30-53 (201)
427 2x77_A ADP-ribosylation factor 96.5 0.0008 2.7E-08 51.2 1.8 25 79-103 20-44 (189)
428 4hlc_A DTMP kinase, thymidylat 96.5 0.0029 9.9E-08 50.4 5.0 34 81-114 2-35 (205)
429 1p5z_B DCK, deoxycytidine kina 96.5 0.00085 2.9E-08 54.7 1.9 29 78-106 21-49 (263)
430 3tmk_A Thymidylate kinase; pho 96.5 0.0015 5.3E-08 52.7 3.3 28 80-107 4-31 (216)
431 1sxj_D Activator 1 41 kDa subu 96.5 0.0011 3.8E-08 55.4 2.6 24 83-106 60-83 (353)
432 2ce7_A Cell division protein F 96.5 0.0012 4.3E-08 59.3 3.1 23 84-106 52-74 (476)
433 1sky_E F1-ATPase, F1-ATP synth 96.5 0.001 3.5E-08 59.9 2.5 33 80-112 150-183 (473)
434 3d3q_A TRNA delta(2)-isopenten 96.5 0.0014 4.6E-08 56.8 3.1 25 82-106 8-32 (340)
435 3def_A T7I23.11 protein; chlor 96.5 0.0014 4.8E-08 53.5 3.1 24 82-105 37-60 (262)
436 2z4s_A Chromosomal replication 96.5 0.0011 3.8E-08 58.6 2.6 25 81-105 130-154 (440)
437 2g3y_A GTP-binding protein GEM 96.5 0.0015 5.3E-08 52.0 3.2 23 82-104 38-60 (211)
438 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0019 6.6E-08 51.7 3.8 24 82-105 40-63 (262)
439 3cpj_B GTP-binding protein YPT 96.5 0.0015 5.2E-08 51.4 3.1 24 82-105 14-37 (223)
440 1h65_A Chloroplast outer envel 96.5 0.0014 4.9E-08 53.6 3.0 24 82-105 40-63 (270)
441 2yc2_C IFT27, small RAB-relate 96.4 0.0006 2.1E-08 52.3 0.5 23 82-104 21-43 (208)
442 4djt_A GTP-binding nuclear pro 96.4 0.00057 2E-08 53.3 0.4 23 82-104 12-34 (218)
443 4dcu_A GTP-binding protein ENG 96.4 0.0012 4.1E-08 58.5 2.5 24 82-105 24-47 (456)
444 3bh0_A DNAB-like replicative h 96.4 0.0037 1.3E-07 52.7 5.4 40 78-117 65-105 (315)
445 2j0v_A RAC-like GTP-binding pr 96.4 0.0016 5.4E-08 50.5 2.8 23 82-104 10-32 (212)
446 2chg_A Replication factor C sm 96.4 0.0017 5.9E-08 49.7 3.0 23 83-105 40-62 (226)
447 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0018 6.2E-08 54.8 3.3 38 81-118 45-82 (322)
448 3uk6_A RUVB-like 2; hexameric 96.4 0.0028 9.5E-08 53.5 4.4 37 81-117 70-107 (368)
449 3syl_A Protein CBBX; photosynt 96.3 0.0022 7.6E-08 52.8 3.5 26 80-105 66-91 (309)
450 3crm_A TRNA delta(2)-isopenten 96.3 0.002 6.7E-08 55.4 3.1 25 82-106 6-30 (323)
451 1u94_A RECA protein, recombina 96.3 0.0022 7.7E-08 55.5 3.5 39 78-116 60-99 (356)
452 2v1u_A Cell division control p 96.3 0.0019 6.5E-08 54.3 3.0 28 79-106 42-69 (387)
453 2j37_W Signal recognition part 96.3 0.0031 1.1E-07 57.1 4.5 41 80-120 100-141 (504)
454 2r62_A Cell division protease 96.2 0.001 3.6E-08 53.9 0.9 22 84-105 47-68 (268)
455 1ofh_A ATP-dependent HSL prote 96.2 0.0022 7.6E-08 52.5 2.6 26 81-106 50-75 (310)
456 3exa_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 54.1 3.7 25 81-105 3-27 (322)
457 2zts_A Putative uncharacterize 96.2 0.0032 1.1E-07 49.8 3.4 39 79-117 28-68 (251)
458 2bjv_A PSP operon transcriptio 96.2 0.0055 1.9E-07 49.6 4.9 28 81-108 29-56 (265)
459 3t15_A Ribulose bisphosphate c 96.1 0.0023 7.8E-08 53.4 2.6 25 82-106 37-61 (293)
460 3gmt_A Adenylate kinase; ssgci 96.1 0.0031 1E-07 51.7 3.2 23 83-105 10-32 (230)
461 1puj_A YLQF, conserved hypothe 96.1 0.0037 1.3E-07 52.2 3.7 26 81-106 120-145 (282)
462 2i1q_A DNA repair and recombin 96.1 0.0029 9.9E-08 53.1 2.9 26 78-103 95-120 (322)
463 1wxq_A GTP-binding protein; st 96.1 0.0029 9.8E-08 55.5 3.0 23 83-105 2-24 (397)
464 1d2n_A N-ethylmaleimide-sensit 96.1 0.0031 1E-07 51.4 3.0 26 81-106 64-89 (272)
465 2ygr_A Uvrabc system protein A 96.1 0.0023 7.8E-08 62.4 2.4 25 74-98 38-63 (993)
466 3te6_A Regulatory protein SIR3 96.0 0.005 1.7E-07 52.6 4.3 41 79-119 43-92 (318)
467 2hjg_A GTP-binding protein ENG 96.0 0.0025 8.7E-08 56.0 2.5 23 83-105 5-27 (436)
468 3d8b_A Fidgetin-like protein 1 96.0 0.0042 1.4E-07 53.1 3.7 27 80-106 116-142 (357)
469 3hws_A ATP-dependent CLP prote 96.0 0.004 1.4E-07 53.0 3.6 27 80-106 50-76 (363)
470 1ko7_A HPR kinase/phosphatase; 96.0 0.0037 1.3E-07 53.5 3.3 27 77-103 140-166 (314)
471 2b8t_A Thymidine kinase; deoxy 96.0 0.0039 1.3E-07 50.6 3.3 37 78-114 9-46 (223)
472 2qgz_A Helicase loader, putati 96.0 0.0042 1.4E-07 52.3 3.5 33 81-113 152-186 (308)
473 4b4t_K 26S protease regulatory 96.0 0.0034 1.2E-07 55.8 3.0 36 83-119 208-243 (428)
474 4b4t_L 26S protease subunit RP 96.0 0.0033 1.1E-07 56.0 3.0 37 82-119 216-252 (437)
475 3io5_A Recombination and repai 96.0 0.0049 1.7E-07 53.1 3.9 51 79-132 27-80 (333)
476 2qby_B CDC6 homolog 3, cell di 96.0 0.0044 1.5E-07 52.3 3.6 25 81-105 45-69 (384)
477 1tue_A Replication protein E1; 95.9 0.0038 1.3E-07 50.6 2.9 26 81-106 58-83 (212)
478 3e1s_A Exodeoxyribonuclease V, 95.9 0.004 1.4E-07 57.1 3.4 35 80-114 203-238 (574)
479 3geh_A MNME, tRNA modification 95.9 0.0037 1.3E-07 55.9 3.1 24 81-104 224-247 (462)
480 3pvs_A Replication-associated 95.9 0.0033 1.1E-07 55.9 2.7 25 83-107 52-76 (447)
481 3gj0_A GTP-binding nuclear pro 95.9 0.0025 8.7E-08 49.9 1.8 23 82-104 16-39 (221)
482 2r44_A Uncharacterized protein 95.9 0.0044 1.5E-07 51.8 3.4 26 81-106 46-71 (331)
483 3hjn_A DTMP kinase, thymidylat 95.9 0.0059 2E-07 48.2 4.0 32 83-114 2-34 (197)
484 3foz_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 53.2 3.1 25 81-105 10-34 (316)
485 2x2e_A Dynamin-1; nitration, h 95.9 0.0025 8.5E-08 54.5 1.7 24 82-105 32-55 (353)
486 3eie_A Vacuolar protein sortin 95.9 0.0054 1.8E-07 51.5 3.7 26 81-106 51-76 (322)
487 3r7w_A Gtpase1, GTP-binding pr 95.9 0.0043 1.5E-07 52.0 3.0 23 82-104 4-26 (307)
488 4b4t_J 26S protease regulatory 95.8 0.004 1.4E-07 55.0 2.9 35 84-119 185-219 (405)
489 1um8_A ATP-dependent CLP prote 95.8 0.0048 1.6E-07 52.8 3.2 26 81-106 72-97 (376)
490 4b4t_M 26S protease regulatory 95.8 0.0037 1.3E-07 55.7 2.6 36 82-118 216-251 (434)
491 3pfi_A Holliday junction ATP-d 95.8 0.0049 1.7E-07 51.5 3.2 25 82-106 56-80 (338)
492 2qen_A Walker-type ATPase; unk 95.8 0.0057 2E-07 50.5 3.5 25 81-105 31-55 (350)
493 3tqf_A HPR(Ser) kinase; transf 95.8 0.0049 1.7E-07 48.8 2.9 27 77-103 12-38 (181)
494 1bif_A 6-phosphofructo-2-kinas 95.8 0.0046 1.6E-07 54.9 3.0 30 77-106 35-64 (469)
495 2qpt_A EH domain-containing pr 95.8 0.0042 1.4E-07 56.7 2.8 24 82-105 66-89 (550)
496 2zan_A Vacuolar protein sortin 95.8 0.0035 1.2E-07 55.4 2.1 25 81-105 167-191 (444)
497 2qp9_X Vacuolar protein sortin 95.7 0.0042 1.4E-07 53.2 2.5 25 82-106 85-109 (355)
498 1xp8_A RECA protein, recombina 95.7 0.006 2E-07 53.0 3.5 40 79-118 72-112 (366)
499 3l0i_B RAS-related protein RAB 95.7 0.00068 2.3E-08 52.3 -2.3 23 82-104 34-56 (199)
500 4a9a_A Ribosome-interacting GT 95.7 0.0063 2.2E-07 53.2 3.6 29 77-105 67-96 (376)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=2.8e-27 Score=200.55 Aligned_cols=119 Identities=15% Similarity=0.031 Sum_probs=95.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC--chHHHhhhceeccchhH--------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~--~~~~~~~~iG~v~Q~~~-------- 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++... ...++++.||||||++.
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 556666664 59999999999999999999999999999 9999999998422 23356778999999873
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 444443221 223344567899999999999899999999999999999974
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=7.7e-27 Score=205.12 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=98.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---HhhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~~~iG~v~Q~~~------ 138 (189)
.+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++...+..+ +++.||||||++.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T 121 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence 3566777765 59999999999999999999999999999 99999999998766544 3578999999875
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++|+.++|.+..++++.+|||||||||+|+
T Consensus 122 V~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 45544321 1223345567899999999999999999999999999999974
No 3
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=1.2e-26 Score=195.59 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=98.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.++|++|++. +
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 3455666654 59999999999999999999999999998 999999999987777777888999999864 5
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.... ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 105 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 105 VIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp HHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred HHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 565554322 2233567788999999999889999999999999999974
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=1.4e-26 Score=202.69 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=95.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++..... .++.||||||++. +
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHH
Confidence 3566667764 69999999999999999999999999999 999999999865433 3568999999864 5
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 5555421 1122234467889999999999899999999999999999974
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=2.2e-26 Score=190.38 Aligned_cols=119 Identities=18% Similarity=0.088 Sum_probs=93.9
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH----hhhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~----~~~iG~v~Q~~~------ 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++ ++.||||||++.
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 455666655 59999999999999999999999999999 999999999876665443 346999999875
Q ss_pred --HHHHhcCCC----CCChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGCP----HAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~~----~~~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|.+. .++++.+|||||||||+|+
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 455443211 12234456778899999999875 4999999999999999974
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=1.6e-26 Score=202.67 Aligned_cols=120 Identities=21% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC--CchHHHhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~--~~~~~~~~~iG~v~Q~~~------- 138 (189)
.+..+++|.- +||+++|+||||||||||||+|+|+++|+ |+|.++|.++.. ......++.||||||++.
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV 97 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV 97 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence 3455666665 48999999999999999999999999999 999999998832 112234568999999865
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 677776432 222345567899999999999999999999999999999974
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=2.9e-26 Score=193.06 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=93.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~------- 138 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++. .....++++.|+||||++.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 117 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCH
Confidence 3456667754 69999999999999999999999999999 99999999874 2233455678999999864
Q ss_pred -HHHHhcC--CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++. .......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 4554431 11122233456788999999999889999999999999999974
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=5.2e-26 Score=190.33 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=94.4
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH-HHhhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~-~~~~~iG~v~Q~~~--------~ 139 (189)
+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...... .+++.|+||||++. +
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 455666654 69999999999999999999999999999 9999999998654433 34568999999864 5
Q ss_pred HHHhcCCC-C-------------CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-H-------------AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~-------------~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... . ....+...++.++|+.++|....++++.+|||||||||+|+
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 56554322 1 11223456788999999999889999999999999999974
No 9
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=4.3e-26 Score=193.42 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=94.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC--CCchHHHhhhceeccchhH-------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI------- 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~--~~~~~~~~~~iG~v~Q~~~------- 138 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++. ..+..++++.|+||||++.
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~l 114 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE 114 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCC
Confidence 3456666654 69999999999999999999999999999 99999999886 4455566778999999863
Q ss_pred ---HHHHhcCCCCC-----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ---RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ---~~i~~g~~~~~-----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++..... ...+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 115 RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 34444422110 1123456788999999999889999999999999999874
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=3e-26 Score=202.33 Aligned_cols=117 Identities=15% Similarity=-0.006 Sum_probs=95.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +||+++|+||||||||||||+|+|+++|+ |+|.++|.++...+.. .+.||||||++. +|
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~en 95 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAEN 95 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHHHH
Confidence 456666665 59999999999999999999999999999 9999999999765543 367999999975 45
Q ss_pred HHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (381)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHH
Confidence 555422 1223345567899999999999999999999999999999974
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=3.7e-26 Score=187.71 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=92.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH---Hh-hhceeccchhH------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI------ 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~---~~-~~iG~v~Q~~~------ 138 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..+ ++ +.|+||||++.
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT 98 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCC
Confidence 455666654 69999999999999999999999999999 99999999986554432 23 67999999864
Q ss_pred --HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 44443211 1112233456788999999999889999999999999999974
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=3.6e-26 Score=189.56 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=93.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH--------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~--------~ 139 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++......++ ++.|+||||++. +
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 100 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence 455666654 69999999999999999999999999999 999999999865555444 346999999864 5
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcC-CchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lg-L~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++........+..+++.++++.++ |....++++.+|||||||||+|+
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHH
Confidence 666543222222234566788999995 88788999999999999999874
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=1e-25 Score=189.29 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=92.7
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC----------Cch---HHHhhhceeccc
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KED---GEFLMRNGALPE 135 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~----------~~~---~~~~~~iG~v~Q 135 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ... .++++.++||||
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q 100 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 100 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence 455666654 59999999999999999999999999999 999999998841 222 234678999999
Q ss_pred hhH--------HHHHhcC--CCCCChHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 136 ERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 136 ~~~--------~~i~~g~--~~~~~~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
++. +++.++. .......+..+++.++|+.++|... .++++.+|||||||||+|+
T Consensus 101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 853 4554431 1112223345678899999999988 8999999999999999974
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=9.4e-26 Score=197.76 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=95.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++..... .++.||||||++. ++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGMVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEEECSSCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEEEEecCcccCCCCCHHHH
Confidence 456677765 59999999999999999999999999999 999999999865443 2468999999864 66
Q ss_pred HHhcCCCC-CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... ....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 96 IAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp HHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 66654321 11223346789999999999899999999999999999974
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=8.2e-26 Score=189.54 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=93.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. ...++++.|+||||++. +
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e 107 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIE 107 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence 3556666665 59999999999999999999999999999 999999998854 34456678999999864 4
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.+... ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 108 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 108 YLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 4433211 0111222346788999999999889999999999999999874
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=1.5e-25 Score=197.29 Aligned_cols=117 Identities=12% Similarity=-0.047 Sum_probs=93.3
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++...... ++.||||||++. ++
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~en 103 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYEN 103 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHH
Confidence 456677765 59999999999999999999999999999 9999999998654432 468999999875 56
Q ss_pred HHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 104 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 104 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 6665432 122234456789999999999899999999999999999974
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=6.6e-26 Score=198.24 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=95.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc---hHHHhhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~~------- 138 (189)
+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ....++.||||||++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 456677764 58999999999999999999999999999 99999998874310 1223568999999864
Q ss_pred -HHHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 -RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++... .....+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 666665432 222334467899999999999899999999999999999974
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.4e-25 Score=196.81 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=94.9
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
.+..+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++...... ++.||||||++. +
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHH
Confidence 3556677765 59999999999999999999999999999 9999999998654432 468999999864 5
Q ss_pred HHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 145 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIA 145 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHH
Confidence 5555421 1122233456789999999999889999999999999999974
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=6e-26 Score=189.15 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=89.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++. ++
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence 3556666655 59999999999999999999999999999 999999999876666667788999999864 45
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
+.++. ... ..+++.++++.+++.+..++ ++.+|||||||||+|+
T Consensus 103 l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 103 ISLAN-PGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HTTTC-TTC----CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred HhccC-CCC----CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 54432 111 23456677777777655444 4589999999999974
No 20
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=2.1e-25 Score=186.37 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=93.8
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i 141 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..++++.++||||++. +++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 94 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence 455666654 69999999999999999999999999888999999998865556667788999999864 455
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++..... ..+++.++|+.++|....++++.+||||||||++|+
T Consensus 95 ~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 95 TLHQHDKT----RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp HTTCSSTT----CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred HHhhccCC----cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 55432211 156788999999999889999999999999999874
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=2e-25 Score=187.75 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=92.6
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH---------H
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------R 139 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~ 139 (189)
+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++.. . ++++.|+||||++. +
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--~-~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--Y-EIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--H-HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--H-HhhhhEEEEeccchhhcCCCcHHH
Confidence 456666654 59999999999999999999999999999 999999998742 2 56678999999852 5
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCc--hhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~--~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++........+..+++.++|+.++|. +..++++.+|||||||||+|+
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence 55554322111122356788999999998 889999999999999999974
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=1.2e-25 Score=196.44 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=92.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
+.++++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++..... .++.||||||++. ++
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 556677764 58999999999999999999999999999 999999999865433 3578999999864 45
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... ..... +++.++|+.++|....++++.+|||||||||+|+
T Consensus 93 l~~~~~~~-~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 139 (348)
T 3d31_A 93 LEFGMRMK-KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139 (348)
T ss_dssp HHHHHHHH-CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 54432100 00112 6788999999999899999999999999999974
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=3.6e-25 Score=183.92 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=90.1
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHH
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV 141 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i 141 (189)
..+++|.- + ++++|+|||||||||||++|+|+++|+ |+|.++|.++.... ..++.|+||||++. +++
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 44555543 5 999999999999999999999999999 99999999885422 23568999999864 555
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.++... .......+++.++|+.++|....++++.+||||||||++|+
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 92 AYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp HTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 554321 12223356788999999999889999999999999999874
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=2.2e-25 Score=196.21 Aligned_cols=117 Identities=11% Similarity=-0.063 Sum_probs=93.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC------CchHHHhhhceeccchhH----
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI---- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~------~~~~~~~~~iG~v~Q~~~---- 138 (189)
+..+++|.- +|++++|+||||||||||||+|+|+++|+ |+|.++|.++.. ... .++.||||||++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l~~~ 95 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCCCTT
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCccCCC
Confidence 455666664 69999999999999999999999999999 999999988743 222 2468999999864
Q ss_pred ----HHHHhcCC-CCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 ----RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ----~~i~~g~~-~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++|+.++|....++++.+|||||||||+|+
T Consensus 96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 55555421 1122233456789999999999899999999999999999974
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=5e-25 Score=182.80 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=88.7
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++. ++
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~en 95 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIREN 95 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHH
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHH
Confidence 3566677754 59999999999999999999999999998 999999998865544456678999999874 45
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
+.++..... ..+++.++++.+++.+..+ +++.+||||||||++|+
T Consensus 96 l~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 96 LTYGLEGDY----TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp TTSCTTSCS----CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred HhhhccCCC----CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 544321111 2345677888888765544 34679999999999974
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=5.3e-25 Score=185.83 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=91.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
.+.++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+...+++.|+||||++. ++
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 112 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN 112 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHH
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHH
Confidence 3566667754 59999999999999999999999999999 999999998865555566778999999864 56
Q ss_pred HHhcCCCCCChHH-----HHHHHHHHHhhc--CCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIRE-----DISINLGPLEEL--SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~-----d~~~v~~~L~~l--gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++........+ ....+.++++.+ +|....++++.+|||||||||+|+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 113 IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 6654322111011 112345677777 677778899999999999999974
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=6.7e-25 Score=188.58 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=90.3
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
..+..+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++...+..++++.|+||||++. +
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e 146 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD 146 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH
Confidence 34566677765 59999999999999999999999999999 999999999988888888899999999975 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
|+.++.... ...++.++++.+++.+. ......+||||||||++|+
T Consensus 147 Ni~~~~~~~-----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 147 NIRYGRVTA-----GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp HHHTTSTTC-----CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred HHHhhcccC-----CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 666654321 12344455555555433 3445579999999999974
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=1.9e-25 Score=182.92 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=88.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------H
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R 139 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~ 139 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++|.++. .+++.++||||++. +
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHH
Confidence 4566666654 69999999999999999999999999999 99999998874 25678999999864 4
Q ss_pred HHHhcCCC-CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~-~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++... .. ..+.+++.++|+.++|... ++++.+||||||||++|+
T Consensus 98 nl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 98 YLKAVASLYGV--KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp HHHHHHHHTTC--CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhcCC--chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHH
Confidence 44332110 00 1124678889999999877 999999999999999874
No 29
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=188.92 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
..+..+++|.- +|++++|+|||||||||||++|+|+++ + |+|.++|.++...+..++++.|+||||++. +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e 112 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK 112 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH
Confidence 34566677665 599999999999999999999999998 6 999999999987777778889999999975 3
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccccc-----------CChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-----------SGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~e-----------LSGGqrq~~~~i 189 (189)
++.+. ... ..+++.++|+.++|....++++.+ |||||||||+|+
T Consensus 113 nl~~~--~~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 113 NLDPN--AAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp HHCTT--CCS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred Hhhhc--ccc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 43221 111 345678899999999889999988 999999999974
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=3.2e-24 Score=178.80 Aligned_cols=119 Identities=15% Similarity=0.010 Sum_probs=86.5
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc--ccCC-ccEEEeecCCCCCchHHH-hhhceeccchhH-------
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------- 138 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl--l~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------- 138 (189)
+.++++|.- +|++++|+|||||||||||++|+|+ ++|+ |+|.++|.++...+..++ ++.++|+||++.
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTI 97 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCH
Confidence 455666654 6999999999999999999999998 7888 999999999866555444 346899999864
Q ss_pred -HHHHhcCC----CCCChHHHHHHHHHHHhhcCC-chhhcccccc-CChHHHHhhhcC
Q 029723 139 -RAVETGGC----PHAAIREDISINLGPLEELSN-LFKADLLLCE-SGGGNLQTISFI 189 (189)
Q Consensus 139 -~~i~~g~~----~~~~~~~d~~~v~~~L~~lgL-~~~~~~~~~e-LSGGqrq~~~~i 189 (189)
+++.++.. ......+..+++.++|+.++| ....++++.+ |||||||||+|+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 33333210 001122334678889999999 4678999999 999999999974
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=6.3e-24 Score=178.77 Aligned_cols=120 Identities=11% Similarity=-0.044 Sum_probs=88.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc--cCC-ccEEEeecCCCCCchHHH-hhhceeccchhH------
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------ 138 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-G~I~i~g~di~~~~~~~~-~~~iG~v~Q~~~------ 138 (189)
.+.++++|.- +|++++|+|||||||||||++|+|++ +|+ |+|.++|.++......++ ++.++||||++.
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~t 113 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVS 113 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCB
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccccc
Confidence 3556666654 59999999999999999999999994 677 999999998865544444 346999999863
Q ss_pred --HHHHhcC--------CCCCChHHHHHHHHHHHhhcCCc-hhhccccc-cCChHHHHhhhcC
Q 029723 139 --RAVETGG--------CPHAAIREDISINLGPLEELSNL-FKADLLLC-ESGGGNLQTISFI 189 (189)
Q Consensus 139 --~~i~~g~--------~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~-eLSGGqrq~~~~i 189 (189)
+++.+.. .......+..+++.++|+.++|. ...++++. +|||||||||+|+
T Consensus 114 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 114 NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 2332211 01112223346788999999996 46788887 5999999999974
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.89 E-value=1e-23 Score=176.81 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV 141 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i 141 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+|+|.++|.++...+..++++.|+||||++. +++
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 3556666655 59999999999999999999999999877999999998865555667788999999874 566
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
.++... . ..+++.++++.+++... .++++.+|||||||||+|+
T Consensus 114 ~~~~~~-~----~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 114 LYGKLD-A----TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp HTTCTT-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred hccCCC-C----CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 554321 1 23345667777776543 2356789999999999974
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=1.4e-23 Score=175.53 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=84.2
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~ 140 (189)
..++++|.- +|++++|+|||||||||||++|+|+++|+ |+|. +++.|+||||++. ++
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~en 86 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDI 86 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHHH
Confidence 455666654 69999999999999999999999999999 9997 2357999999864 55
Q ss_pred HHhcCCCC-----CChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~-----~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++.... .....+.+++.++|+.++|.+..++++.+||||||||++|+
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 87 VLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp HHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHH
Confidence 55543211 11133456788999999999889999999999999999974
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=7.2e-24 Score=178.43 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=87.4
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhce-eccchhH------HHHH
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI------RAVE 142 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG-~v~Q~~~------~~i~ 142 (189)
...+++|.-+|++++|+|||||||||||++|+|++ |+ |+|.++|.++... .. ++.++ ||||++. +++.
T Consensus 20 il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~enl~ 95 (263)
T 2pjz_A 20 SLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVNDIVY 95 (263)
T ss_dssp EEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHHHHH
T ss_pred eEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHHHHH
Confidence 44556665559999999999999999999999999 98 9999999887432 22 56899 9999863 3333
Q ss_pred hcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 143 TGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 143 ~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+..... ....+++.++|+.++|. ...++++.+||||||||++|+
T Consensus 96 ~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 96 LYEELK---GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp HHHHHT---CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred Hhhhhc---chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 321000 11345688999999998 889999999999999999874
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=8.6e-23 Score=187.93 Aligned_cols=116 Identities=12% Similarity=0.102 Sum_probs=92.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||||++. +|
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHH
Confidence 4556666665 59999999999999999999999999998 999999999977777778889999999975 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhccc-----------cccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLL-----------LCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~-----------~~eLSGGqrq~~~~i 189 (189)
+.++..+.. +.+++.++++.+++.+..+++ ..+||||||||++|+
T Consensus 437 i~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 437 IAYAAEGEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HhccCCCCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 655531111 345677788888776554443 479999999999974
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=9.2e-23 Score=187.73 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=93.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
....+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||||++. +|
T Consensus 357 ~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 436 (582)
T 3b60_A 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436 (582)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHH
Confidence 4556666665 59999999999999999999999999999 999999999987777778889999999975 67
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
+.++..+.. +.+++.++++.+++.+..++ ...+||||||||++|+
T Consensus 437 i~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 437 IAYARTEEY----SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHTTTTSCC----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HhccCCCCC----CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 766542222 34567788888887655444 4579999999999874
No 37
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1.3e-22 Score=187.43 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=91.8
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 447 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHH
Confidence 34566677665 49999999999999999999999999999 999999999988888888899999999975 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhcccc-----------ccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLL-----------CESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~-----------~eLSGGqrq~~~~i 189 (189)
|+.++... . +.+++.++++.+++.+..+..+ .+||||||||++|+
T Consensus 448 ni~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 448 NLKYGNPG-A----TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp HHHSSSTT-C----CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred HHhcCCCC-C----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 66665321 1 2234566777776655544444 68999999999874
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=2e-22 Score=185.88 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=92.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +|
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 437 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHH
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHH
Confidence 3556666665 58999999999999999999999999999 999999999987777778889999999975 67
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhcc-----------ccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~-----------~~~eLSGGqrq~~~~i 189 (189)
+.++..... ..+.+++.++++.+++.+..++ ...+||||||||++|+
T Consensus 438 i~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 438 IAYGADDPS--SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp HHTTSSSTT--TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred HhhcCCCcc--ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 766542210 1134567788888887554332 2389999999999874
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.85 E-value=2.8e-22 Score=184.49 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.++||+|++. +
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~e 433 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 433 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHH
Confidence 34566777765 59999999999999999999999999999 999999999987778888899999999975 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
|+.++... . ..+++.++++.+++.+.. .....+||||||||++|+
T Consensus 434 ni~~~~~~-~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 434 NILLGRPT-A----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp HHGGGCSS-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred HHhcCCCC-C----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 66665322 1 234455666666554433 344568999999999874
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=6.5e-22 Score=182.52 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++|+||+|++. +
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e 435 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE 435 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHH
Confidence 34566676665 48999999999999999999999999999 999999999988888888899999999975 6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhc-----------CCchhhccccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEEL-----------SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~l-----------gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
|+.++... . ..+++.++++.. +++...++...+||||||||++|+
T Consensus 436 ni~~~~~~-~----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 436 NLKWGRED-A----TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp HHTTTCSS-C----CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred HHhccCCC-C----CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 66655322 1 122333333333 334345677789999999999874
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.85 E-value=1.1e-21 Score=161.35 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++| .|+|+||++. ++
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~en 88 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKEN 88 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHH
Confidence 4556666654 59999999999999999999999999999 9999987 3899999864 55
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchh-----------hccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFK-----------ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-----------~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... . ..++.++++.+++... .++++.+||||||||++|+
T Consensus 89 l~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 89 IIFGVSY--D----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp HHTTSCC--C----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred hhccCCc--C----hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 5554211 1 1122334444444332 2334689999999999874
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.85 E-value=4.8e-22 Score=164.52 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++| .|+||||++. ++
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~en 85 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLREN 85 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHH
Confidence 3556666654 59999999999999999999999999998 9999987 3899999864 55
Q ss_pred HHhcCCCCCChHHHHHHHHHH---HhhcCCc-----hhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGP---LEELSNL-----FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~---L~~lgL~-----~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++..... +...++.++ ++.+++. ...++++.+||||||||++|+
T Consensus 86 l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 86 ILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp HHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred hhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 655432111 111222222 2223321 124678999999999999974
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=1.6e-20 Score=186.73 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=94.7
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+..++++|.-+ |+.+||||++|||||||+++|+|++.|+ |+|.++|.|+.+.+..++|++|++|||+|. +|
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 46677777665 8999999999999999999999999998 999999999999999999999999999986 77
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchh-------hcccc----ccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFK-------ADLLL----CESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~-------~~~~~----~eLSGGqrq~~~~i 189 (189)
+.+|..+.- ...+++.++++..++.+. .+..+ ..||||||||++|+
T Consensus 1173 I~~gld~~~---~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1173 IIYGLDPSS---VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp HSSSSCTTT---SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred HhccCCCCC---CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 777653321 134567777777776543 23333 46999999999874
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.80 E-value=1.9e-20 Score=159.62 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
...++++|.- +|++++|+|||||||||||++|+|+++|+ |+|.++| .|+||||++. ++
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~en 118 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKEN 118 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHH
Confidence 3556666665 59999999999999999999999999998 9999876 3899999864 44
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhh-----------ccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKA-----------DLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~-----------~~~~~eLSGGqrq~~~~i 189 (189)
+. +. . .. ..++.++++.+++.... ++.+.+||||||||++|+
T Consensus 119 l~-~~-~-~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 119 II-GV-S-YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp HH-TT-C-CC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred hh-Cc-c-cc----hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 44 22 1 11 12233445555554322 234579999999999874
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.80 E-value=6.5e-20 Score=181.95 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.-+ ||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+..+++++++||||++. +|
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 1126 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHH
Confidence 45677777665 8999999999999999999999999999 999999999988888888899999999984 56
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
+.++...... ..+.+.++++..++.+... ....+||||||||++|+
T Consensus 1127 i~~~~~~~~~---~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1127 IAYGDNSRVV---SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp HTCCCSSCCC---CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred HhccCCCCCC---CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 6555322111 2233444555544443322 23458999999999874
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=6.1e-20 Score=182.55 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=93.6
Q ss_pred CCCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------H
Q 029723 69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R 139 (189)
Q Consensus 69 ~~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~ 139 (189)
.+..++++|.- +|++++||||+|||||||+++|+|+++|+ |+|.++|.|+...+...+++.|+||+|+|. +
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e 510 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEE 510 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHH
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhH
Confidence 35566777665 49999999999999999999999999999 999999999999999999999999999986 7
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHhhcCCchhhc-----------cccccCChHHHHhhhcC
Q 029723 140 AVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCESGGGNLQTISFI 189 (189)
Q Consensus 140 ~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~-----------~~~~eLSGGqrq~~~~i 189 (189)
|+.+|... . +.+++.++++..++.+... ..-..||||||||++|+
T Consensus 511 NI~~g~~~-~----~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 511 NISLGKEG-I----TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp HHHTTCTT-C----CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred HHhhhccc-c----hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence 88887532 2 3455666766666543322 23457999999999974
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=5.6e-20 Score=182.37 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HH
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA 140 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~ 140 (189)
+...+++|.- +|++++|+||||||||||+++|+|+++|+ |+|.++|.++...+..++++.|+||+|+|. +|
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 4666777765 48999999999999999999999999999 999999999988888888999999999985 67
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCc-----------hhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNL-----------FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~-----------~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.++... .. .+++.++++..++. ........+||||||||++|+
T Consensus 484 i~~g~~~-~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiA 538 (1284)
T 3g5u_A 484 IRYGRED-VT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538 (1284)
T ss_dssp HHHHCSS-CC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHH
T ss_pred HhcCCCC-CC----HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHH
Confidence 7776432 21 22333444433332 223445668999999999974
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.76 E-value=4.5e-20 Score=171.22 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~ 149 (189)
.+||+++|+|||||||||||++|+|+++|+ |+|.+ .+.++|+||++. +++.....
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~--- 443 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDS--- 443 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHH---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhc---
Confidence 479999999999999999999999999998 99875 136899999863 11111000
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.......++.++|+.++|....++++.+|||||||||+|+
T Consensus 444 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 444 SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 483 (607)
T ss_dssp HHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 0001235678899999998889999999999999999874
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.76 E-value=2.1e-19 Score=164.61 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=74.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~ 149 (189)
.+||+++|+|||||||||||++|+|+++|+ |+|.+.+. .++|++|+.. +++........
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 359 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKPQRIFPNYDGTVQQYLENASKDAL 359 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEECSSCCCCCSSBHHHHHHHHCSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeechhcccccCCCHHHHHHHhhhhcc
Confidence 479999999999999999999999999999 99986543 4667776532 33333211111
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. .....+.++|+.++|....++++.+|||||||||+|+
T Consensus 360 ~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 360 S--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIA 397 (538)
T ss_dssp C--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHH
T ss_pred c--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 1 1234577899999999889999999999999999974
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.76 E-value=4.7e-20 Score=168.83 Aligned_cols=95 Identities=19% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA 149 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~ 149 (189)
.+||+++|+|||||||||||++|+|+++|+ |+|.+ ...|+||+|++. +++......
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-- 374 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDAS-- 374 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhcc--
Confidence 479999999999999999999999999998 99875 135899999863 111110000
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...+.+++.++|+.+++....++++.+|||||||||+|+
T Consensus 375 -~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 375 -KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIA 413 (538)
T ss_dssp -HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 001234677899999998888999999999999999874
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.76 E-value=2.3e-19 Score=164.23 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=77.9
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE---------EEeecCCCCCchHHH--hhhceeccchhH
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDGEF--LMRNGALPEERI 138 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I---------~i~g~di~~~~~~~~--~~~iG~v~Q~~~ 138 (189)
...+++...+||+++|+|||||||||||++|+|+++|+ |++ .++|.++........ ...+++++|...
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~ 116 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVD 116 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGG
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhh
Confidence 34445433689999999999999999999999999998 985 233333211000111 135778888643
Q ss_pred HHHHhcCCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...... .. ... +...++.++|+.++|....++++.+|||||||||+|+
T Consensus 117 ~~~~~~--~~-~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iA 170 (538)
T 1yqt_A 117 LIPKAV--KG-KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA 170 (538)
T ss_dssp GSGGGC--CS-BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHH
T ss_pred hcchhh--hc-cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHH
Confidence 211110 00 111 1123578899999999889999999999999999974
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.74 E-value=6.9e-20 Score=169.99 Aligned_cols=116 Identities=22% Similarity=0.168 Sum_probs=78.2
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE---------EEeecCCCCCchH--HHhhhceeccchhH
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL---------AAVTNDIFTKEDG--EFLMRNGALPEERI 138 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I---------~i~g~di~~~~~~--~~~~~iG~v~Q~~~ 138 (189)
...+++...+|++++|+|||||||||||++|+|+++|+ |++ .++|.++...... .....+++++|...
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~ 186 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVD 186 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGG
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhh
Confidence 34445434689999999999999999999999999998 985 2334333111001 11235777777643
Q ss_pred HHHHhcCCCCCChH------HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCPHAAIR------EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~~~~~~------~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...... .. ... +...++.++|+.|+|....++++.+|||||||||+|+
T Consensus 187 ~~~~~~--~~-tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 187 LLPKAV--KG-KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp GGGGTC--CS-BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred hchhhc--cc-cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence 211110 00 111 1124578899999999889999999999999999974
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.73 E-value=2.3e-19 Score=164.34 Aligned_cols=117 Identities=13% Similarity=-0.041 Sum_probs=74.6
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccE-----------EEeecCCCCCchHHHhh--hceeccchhH
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSL-----------AAVTNDIFTKEDGEFLM--RNGALPEERI 138 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I-----------~i~g~di~~~~~~~~~~--~iG~v~Q~~~ 138 (189)
-++.+..+|++++|+||||||||||||+|+|+++|+ |+| .+.+.++.......... .+...+|...
T Consensus 17 ~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (538)
T 3ozx_A 17 FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVE 96 (538)
T ss_dssp ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTT
T ss_pred cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhh
Confidence 356777789999999999999999999999999998 988 34444442111111111 1222222211
Q ss_pred HHHHhcCCC---CCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 139 RAVETGGCP---HAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 139 ~~i~~g~~~---~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
....+.... .+.......++.++++.+++....++++.+|||||||||+|+
T Consensus 97 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA 150 (538)
T 3ozx_A 97 YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150 (538)
T ss_dssp GGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred hhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 000000000 000011123577899999999899999999999999999874
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.4e-18 Score=161.29 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=72.0
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEE-----------EeecCCCCCchHHHhhhce--eccchh
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMRNG--ALPEER 137 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~-----------i~g~di~~~~~~~~~~~iG--~v~Q~~ 137 (189)
..++....+|++++|+|||||||||||++|+|+++|+ |+|. +.|.++.......+.+.+. +.+|..
T Consensus 94 l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (608)
T 3j16_B 94 LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYV 173 (608)
T ss_dssp EECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCT
T ss_pred ecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhh
Confidence 3444456789999999999999999999999999998 9872 1111110000000011111 111111
Q ss_pred HHHHHhcCCCCCCh--------HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 138 IRAVETGGCPHAAI--------REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 138 ~~~i~~g~~~~~~~--------~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.............. .....++.++|+.|+|....++++.+|||||||||+|+
T Consensus 174 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 174 DNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG 233 (608)
T ss_dssp TTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred hhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence 00000000000000 11236788999999999999999999999999999974
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.9e-18 Score=155.56 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH--------HHHHhcCCCCCCh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAI 151 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~--------~~i~~g~~~~~~~ 151 (189)
||+++|+|||||||||||++|+|+++|+ |+. +. ...++|++|+.. +++........
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~-- 442 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF-- 442 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTT--
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCccHHHHHHHHhhccc--
Confidence 4889999999999999999999999998 862 21 135788888642 22222111111
Q ss_pred HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 152 REDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 152 ~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
.....+.++|+.++|....++++.+|||||||||+|+
T Consensus 443 -~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 443 -LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV 479 (608)
T ss_dssp -TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 1234667889999999899999999999999999874
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=1.3e-16 Score=154.45 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g 115 (189)
....+++|.- +|++++|+|||||||||||++|+|+++|+ |+|.+++
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 3456666654 69999999999999999999999999999 9999875
No 57
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-18 Score=156.18 Aligned_cols=97 Identities=14% Similarity=-0.003 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-c-c-EEEeecCCCCCchHHHhhhceeccchhHH-----------HHHhcC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIR-----------AVETGG 145 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~-I~i~g~di~~~~~~~~~~~iG~v~Q~~~~-----------~i~~g~ 145 (189)
+|++++|+||||||||||||+|+|+++|+ | + |.+++ + .++.++|+||+... ++ ++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccchhhhh-ccc
Confidence 69999999999999999999999999998 9 8 99987 2 24679999998631 22 221
Q ss_pred CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..... .....++.++++.+++....+ +.+||||||||++++
T Consensus 207 ~~~~~-~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 207 SLTSG-ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQV 247 (460)
T ss_dssp BCBSS-CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHH
T ss_pred ccccC-cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHH
Confidence 11000 011234566788899986655 889999999999874
No 58
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.63 E-value=6.7e-18 Score=142.19 Aligned_cols=99 Identities=17% Similarity=0.009 Sum_probs=56.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHH--------HHHhcCCCCCChH
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------AVETGGCPHAAIR 152 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~--------~i~~g~~~~~~~~ 152 (189)
..++|+|||||||||||++|+|+++|+ |+|.++|.++... ..++.++|++|++.. ++.++.... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~--~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN--NE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSB--CT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcc--cH
Confidence 468999999999999999999999998 9999999887321 234679999998652 222221111 01
Q ss_pred HHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 153 EDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 153 ~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
...+.+.+.+. ....+.++.+||+||+||++++
T Consensus 78 ~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~ia 110 (270)
T 3sop_A 78 NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDT 110 (270)
T ss_dssp TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCC
T ss_pred HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhh
Confidence 11223333333 3456778899999999999874
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=1.3e-16 Score=148.88 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHH---------------------HHHHhcccCC-ccEE-------EeecCCC
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLA-------AVTNDIF 119 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL---------------------~~L~Gll~p~-G~I~-------i~g~di~ 119 (189)
.+..+++|.- +|++++|+||||||||||| +++.++++|+ +.|. +++.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 3566777765 5999999999999999998 8888888886 5443 3333321
Q ss_pred CCchHHHhhhceeccchhHHH-------------------HHhcCCCCCCh------HH-----------HHHHHHHHHh
Q 029723 120 TKEDGEFLMRNGALPEERIRA-------------------VETGGCPHAAI------RE-----------DISINLGPLE 163 (189)
Q Consensus 120 ~~~~~~~~~~iG~v~Q~~~~~-------------------i~~g~~~~~~~------~~-----------d~~~v~~~L~ 163 (189)
...++.+++|+|.+... ..+.....+.+ .. ......++|+
T Consensus 112 ----~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 ----RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred ----ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 11234566666543210 00111110000 00 0011224588
Q ss_pred hcCCchh-hccccccCChHHHHhhhcC
Q 029723 164 ELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 164 ~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
.++|... .++++.+|||||||||+|+
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iA 214 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLA 214 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHH
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHH
Confidence 8999764 6899999999999999874
No 60
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.60 E-value=4e-17 Score=132.63 Aligned_cols=108 Identities=12% Similarity=-0.088 Sum_probs=68.2
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhc-CCCCC-
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETG-GCPHA- 149 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g-~~~~~- 149 (189)
+++|.- +|++++|+||||||||||+++|+|++ | |.|.+ +.++.+... ...++.++|+||++..+.... ....+
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 91 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLE 91 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhh
Confidence 444443 59999999999999999999999998 6 99999 777644322 123468999999876332211 00000
Q ss_pred -------ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 150 -------AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 150 -------~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
.+......+.++++...+. .. ..+|||||+||++|
T Consensus 92 ~~~~~~~~~g~~~~~i~~~l~~~~~~-il---~~~lsggq~qR~~i 133 (218)
T 1z6g_A 92 YDNYANNFYGTLKSEYDKAKEQNKIC-LF---EMNINGVKQLKKST 133 (218)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEE-EE---EECHHHHHHHTTCS
T ss_pred hhhcccccCCCcHHHHHHHHhCCCcE-EE---EecHHHHHHHHHHh
Confidence 0011233466677665432 12 26899999999987
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.59 E-value=5.4e-18 Score=137.87 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i 141 (189)
.+|++++|+|||||||||||++|+|+ +|+ |+|... ++. ....++++.++|+||++.+++
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~-~~~~~~~~~ig~v~q~~~enl 79 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILT-RPAVEAGEKLGFLPGTLNEKI 79 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEE-ECSCCTTCCCCSSCC------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--Eec-CCchhhhcceEEecCCHHHHH
Confidence 57999999999999999999999999 987 998542 121 111234568999999875444
No 62
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.58 E-value=2.1e-16 Score=135.74 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=65.4
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH-------HHHHhcCCCCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHA 149 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~~g~~~~~ 149 (189)
..+|++++|+||||||||||+++|+|+++|. |. +.+++|+|+.. +++.+......
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC
Confidence 4679999999999999999999999999986 53 24666666643 22211110111
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
....+...+.++|+.++ ....+.++.+||+||+||+++
T Consensus 150 ~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 150 PESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp GGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEE
T ss_pred ChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhh
Confidence 11224566778888887 444567888999999999875
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.53 E-value=4.2e-15 Score=138.64 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 555 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 555 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHH
Confidence 45667888899864 46889999999999999974
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.52 E-value=5.4e-15 Score=143.24 Aligned_cols=100 Identities=18% Similarity=0.100 Sum_probs=70.0
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH---------HH
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI---------RA 140 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~---------~~ 140 (189)
..++++|.- +|++++|+|||||||||||++|+| |.| .|.+.. . ..+++|++|++. ++
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~----~--~~~~~~v~q~~~~~~~~ltv~e~ 516 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQ----E--ECRTVYVEHDIDGTHSDTSVLDF 516 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCT----T--TSCEEETTCCCCCCCTTSBHHHH
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccc----c--ceeEEEEcccccccccCCcHHHH
Confidence 455566654 699999999999999999999995 333 222221 0 123678887631 33
Q ss_pred HHhcCCCCCChHHHHHHHHHHHhhcCCc-hhhccccccCChHHHHhhhcC
Q 029723 141 VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 141 i~~g~~~~~~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSGGqrq~~~~i 189 (189)
+.+ . .... ..++.++|+.++|. ...++++.+||||||||++|+
T Consensus 517 l~~-~--~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLA 560 (986)
T 2iw3_A 517 VFE-S--GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALA 560 (986)
T ss_dssp HHT-T--CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHH
T ss_pred HHH-h--hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHH
Confidence 332 1 1111 46788999999995 578999999999999999874
No 65
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.52 E-value=2.6e-15 Score=131.41 Aligned_cols=109 Identities=16% Similarity=-0.038 Sum_probs=73.7
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEEe-ecCCCCCchHHHhhhceeccchhH-----HHHHhcC
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVETGG 145 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i~-g~di~~~~~~~~~~~iG~v~Q~~~-----~~i~~g~ 145 (189)
.+.+..+|++++|+|||||||||||++|+|++. ++ |.|.+. |.+..+ ...+.+++++|... ....++.
T Consensus 208 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 208 PLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp HHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred HHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhh
Confidence 344556799999999999999999999999999 88 999887 654421 23456888888653 1112221
Q ss_pred CCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 146 ~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
..+...+....+.++++.+++....+..+.+|| ||+|+++|
T Consensus 284 -~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 284 -WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAV 324 (358)
T ss_dssp -CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHH
Confidence 122223344567788999999888999999999 99999986
No 66
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=2.3e-15 Score=128.33 Aligned_cols=109 Identities=12% Similarity=-0.015 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhH------------HHH--
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERI------------RAV-- 141 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~------------~~i-- 141 (189)
.|++++|+|||||||||||++|+ +++|+ |+|.+ .|.++++.......+.+|||+|.|. +++
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~ 242 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVRN 242 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGGG
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHHH
Confidence 58999999999999999999999 99998 99999 8888754322111236899998862 122
Q ss_pred HhcC-------CCC-CChHHHHHHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 142 ETGG-------CPH-AAIREDISINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 142 ~~g~-------~~~-~~~~~d~~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.+.. ... ....+...++.++|+.++|.. ..++++..|||.++++++|+
T Consensus 243 ~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 243 YFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1110 000 011123456889999999986 78999999999777777664
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.50 E-value=2.6e-16 Score=134.51 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=70.9
Q ss_pred cCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHH--hhhceeccchhH-------
Q 029723 74 SRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERI------- 138 (189)
Q Consensus 74 ~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~--~~~iG~v~Q~~~------- 138 (189)
.++| ..+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+..... ..+ ++.++|++|++.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 3455 3469999999999999999999999999998 999999999865321 122 347999999753
Q ss_pred --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 139 --RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+++.++.... ....+++.+++....++++.+|| +|++++
T Consensus 172 v~e~l~~~~~~~--------~d~~lldt~gl~~~~~~~~~eLS---kqr~~i 212 (302)
T 3b9q_A 172 LSKAVKRGKEEG--------YDVVLCDTSGRLHTNYSLMEELI---ACKKAV 212 (302)
T ss_dssp HHHHHHHHHHTT--------CSEEEECCCCCSSCCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHcC--------CcchHHhcCCCCcchhHHHHHHH---HHHHHH
Confidence 1121110000 00124566777666778889999 777654
No 68
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.48 E-value=2.1e-15 Score=123.95 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH-------HHHH
Q 029723 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVE 142 (189)
Q Consensus 71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~-------~~i~ 142 (189)
+.++++|.-+ |++++|+||||||||||+++|++++ |.+.++ .+++.++|++|+.. +++.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~~~~ 80 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQKAK 80 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhHhhh
Confidence 5566677654 8999999999999999999999977 444332 23457888888742 1222
Q ss_pred hcCCC-CCC-h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 143 TGGCP-HAA-I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 143 ~g~~~-~~~-~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+.... .+. . ..+...+.+.|+.+ ......++.+||+||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS
T ss_pred hhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc
Confidence 21111 110 0 11234455566554 334567889999999999854
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.47 E-value=1.4e-15 Score=120.49 Aligned_cols=85 Identities=18% Similarity=0.006 Sum_probs=53.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~L 162 (189)
+++|+|||||||||||++|+|++. |.++|.+.........++.+||++|++. +. ..+ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~-~~~------------~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTE-----GK-KKI------------F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETT-----CC-EEE------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCc-----HH-HHH------------H
Confidence 689999999999999999999985 4455544321111134568999999751 10 000 1
Q ss_pred hhcCCc--hhhccccccCChHHHHhhhcC
Q 029723 163 EELSNL--FKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 163 ~~lgL~--~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+... ...++++.+||||||||++|+
T Consensus 60 ~~~~~~~~~~~~~~~~~lSgG~~qr~~la 88 (178)
T 1ye8_A 60 SSKFFTSKKLVGSYGVNVQYFEELAIPIL 88 (178)
T ss_dssp EETTCCCSSEETTEEECHHHHHHHHHHHH
T ss_pred HhhcCCccccccccccCcCHHHHHHHHHH
Confidence 111111 246778899999999998863
No 70
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.46 E-value=2.3e-16 Score=143.43 Aligned_cols=113 Identities=7% Similarity=-0.087 Sum_probs=80.6
Q ss_pred CCCcccCcc--cCCCcEEEEEcCCCchHHHHHHH--HHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHH--H
Q 029723 69 APPILSRNF--NERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA--V 141 (189)
Q Consensus 69 ~~~~~~~~f--~~~GeivgLiGpNGSGKTTLL~~--L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~--i 141 (189)
...+.+++| .++|++++|+||||||||||+++ ++|+++|+ |.|+|.+.+. .....+.++.+||++|++... +
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~~~l 103 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDEGKL 103 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHTTSE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhccCcE
Confidence 445666776 35799999999999999999999 68999977 9999999873 222334556899999987632 1
Q ss_pred HhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 142 ~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
....... .....++|+.++|....++.+.+||+||+|++.|
T Consensus 104 ~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lil 144 (525)
T 1tf7_A 104 FILDASP------DPEGQEVVGGFDLSALIERINYAIQKYRARRVSI 144 (525)
T ss_dssp EEEECCC------CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEecCc------ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1110000 0112235566777777888999999999998865
No 71
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.46 E-value=3.9e-15 Score=126.58 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhHH----------------
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERIR---------------- 139 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~~---------------- 139 (189)
.|++++|+|||||||||||++|+|+++|+ |+|.+ .|.+++........+.+|||+|.|..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l 247 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHY 247 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGG
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHH
Confidence 58999999999999999999999999998 99999 88887653321122468999998741
Q ss_pred HHHhcC-CCCC----ChHHHHHHHHHHHhhcCCc-hhhccccccCCh
Q 029723 140 AVETGG-CPHA----AIREDISINLGPLEELSNL-FKADLLLCESGG 180 (189)
Q Consensus 140 ~i~~g~-~~~~----~~~~d~~~v~~~L~~lgL~-~~~~~~~~eLSG 180 (189)
+..+.. .+.+ ...+...++.++|+.++|. ...++++.+||.
T Consensus 248 ~~~~~~~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 248 FKEFGDKQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp STTSSSCCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHhcccccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 000110 0000 0122345788999999995 678899999985
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.45 E-value=7.4e-15 Score=117.64 Aligned_cols=98 Identities=9% Similarity=-0.060 Sum_probs=58.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCch-HHHhhhceeccchhHHHHHhcCCC---------
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP--------- 147 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~-~~~~~~iG~v~Q~~~~~i~~g~~~--------- 147 (189)
..+|++++|+||||||||||+++|+|+++. |.+.. ++.+... ...++.++|+||++..+..+....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~ 92 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIH 92 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcc-cccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhc
Confidence 447999999999999999999999999863 33322 2211111 122467999999876432221110
Q ss_pred ------CCChHHHHHHHHHH------HhhcCCchhhccccccCC
Q 029723 148 ------HAAIREDISINLGP------LEELSNLFKADLLLCESG 179 (189)
Q Consensus 148 ------~~~~~~d~~~v~~~------L~~lgL~~~~~~~~~eLS 179 (189)
.....+..+++.+. ++.+++....++++.+||
T Consensus 93 ~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS 136 (207)
T 1znw_A 93 GGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT 136 (207)
T ss_dssp GGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE
T ss_pred CchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE
Confidence 01112233445444 555666656677777776
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.43 E-value=1.5e-15 Score=132.97 Aligned_cols=104 Identities=17% Similarity=0.094 Sum_probs=71.4
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HH--HhhhceeccchhH-------
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GE--FLMRNGALPEERI------- 138 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~--~~~~iG~v~Q~~~------- 138 (189)
.++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+++.|+..... .. .++.++|++|++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 34553 468999999999999999999999999998 999999999864321 11 2357999998753
Q ss_pred --HHHHhcCCCCCChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 139 --RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 139 --~~i~~g~~~~~~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+++.++..... + ..+++.+++....++++.+|| +|+++|
T Consensus 229 v~e~l~~~~~~~~----d----~~lldt~Gl~~~~~~~~~eLS---kqr~~i 269 (359)
T 2og2_A 229 LSKAVKRGKEEGY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAV 269 (359)
T ss_dssp HHHHHHHHHHTTC----S----EEEEECCCCSSCCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHhCCC----H----HHHHHhcCCChhhhhHHHHHH---HHHHHH
Confidence 22221110000 0 124556777666778888999 677654
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.41 E-value=7.2e-15 Score=130.81 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=63.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP 161 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~~~ 161 (189)
+++|+||||||||||||+|+|+++|+ |+|.+++.++. +.++++|.+.. ..+.......+.....++.++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---------~~~~v~q~~~~-~~ltv~D~~g~~~~~~~~~~~ 140 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---------MERHPYKHPNI-PNVVFWDLPGIGSTNFPPDTY 140 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------CCCEEEECSSC-TTEEEEECCCGGGSSCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------eeEEecccccc-CCeeehHhhcccchHHHHHHH
Confidence 99999999999999999999999998 99998886642 12778887421 011101111111122357788
Q ss_pred HhhcCCchhhccccccCChH--HHHhhhcC
Q 029723 162 LEELSNLFKADLLLCESGGG--NLQTISFI 189 (189)
Q Consensus 162 L~~lgL~~~~~~~~~eLSGG--qrq~~~~i 189 (189)
|+.+++... +..+. ||+| |+|+++|+
T Consensus 141 L~~~~L~~~-~~~~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 141 LEKMKFYEY-DFFII-ISATRFKKNDIDIA 168 (413)
T ss_dssp HHHTTGGGC-SEEEE-EESSCCCHHHHHHH
T ss_pred HHHcCCCcc-CCeEE-eCCCCccHHHHHHH
Confidence 999988754 34444 9999 99999863
No 75
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.40 E-value=9.6e-15 Score=115.38 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC----ccEEEeecCCCCCc---hHHHh-hhce----eccchhHHHHHhcCCCCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA 149 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~----G~I~i~g~di~~~~---~~~~~-~~iG----~v~Q~~~~~i~~g~~~~~ 149 (189)
++++|+|+||||||||+++|+++++|+ |.|.+++.++...+ ...++ +.++ +++|++..++ . . .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--~--~-~ 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--R--R-V 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--E--E-C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--e--c-C
Confidence 589999999999999999999999874 88999998865443 23344 4677 6777653211 0 0 0
Q ss_pred ChHHHHHHHHHHHhh-c-CCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEE-L-SNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~-l-gL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
. .+....+.++++. + +++ ......|||||+||++|+
T Consensus 78 ~-~~~~a~l~~~i~~~l~g~d---t~i~EglSgGq~qri~lA 115 (171)
T 2f1r_A 78 S-EEEGNDLDWIYERYLSDYD---LVITEGFSKAGKDRIVVV 115 (171)
T ss_dssp C-HHHHTCHHHHHHHHTTTCS---EEEEESCGGGCCCEEEEC
T ss_pred C-hhhhhCHHHHHHhhCCCCC---EEEECCcCCCCCcEEEEE
Confidence 0 0111134455554 4 232 122334999999999875
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.39 E-value=1.3e-13 Score=118.28 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=33.5
Q ss_pred cccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723 72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA 113 (189)
Q Consensus 72 ~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i 113 (189)
..+++|.- +|++++|+|||||||||||++|+|++ .|+|.+
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~ 156 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLS 156 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEEC
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEE
Confidence 44455554 59999999999999999999999999 788854
No 77
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.37 E-value=3e-14 Score=126.93 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=69.8
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC----chHHHhhhceecc---------chhH----
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALP---------EERI---- 138 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~----~~~~~~~~iG~v~---------Q~~~---- 138 (189)
+..+|++++|+|||||||||||++|+++++|+ |.|.+.+.++... +..++.+.+++.| |+|.
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~v 242 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMV 242 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEE
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEE
Confidence 45679999999999999999999999999987 9999999887421 1112233455544 5442
Q ss_pred ----------HHHHhcCCCCCC---h-HHHHHHHHHHHhhcCCchhhccccccCChHHHHhhh
Q 029723 139 ----------RAVETGGCPHAA---I-REDISINLGPLEELSNLFKADLLLCESGGGNLQTIS 187 (189)
Q Consensus 139 ----------~~i~~g~~~~~~---~-~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~ 187 (189)
.++......++. . ..+...+...|..+++... .++.+|||||+||++
T Consensus 243 gEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~--~~~~~LSgg~~QRLa 303 (418)
T 1p9r_A 243 GEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF--LISSSLLGVLAQRLV 303 (418)
T ss_dssp SCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH--HHHHHEEEEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHhh
Confidence 122221111100 0 0112233345777888754 378899999999943
No 78
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.37 E-value=1.2e-14 Score=124.46 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch-H---H--HhhhceeccchhH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-G---E--FLMRNGALPEERI 138 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~-~---~--~~~~iG~v~Q~~~ 138 (189)
+|++++|+||||||||||+++|+++++|+ |+|.+.+.|+..... . . .++.++|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~ 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC
Confidence 68999999999999999999999999998 999999999865431 1 1 2347999999753
No 79
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.37 E-value=8.9e-14 Score=133.10 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 742 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLA 742 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHH
Confidence 46778999999986 46899999999999999874
No 80
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.36 E-value=1.9e-13 Score=132.09 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 157 INLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 157 ~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 4567899999986 67899999999999999874
No 81
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.34 E-value=2.4e-13 Score=118.83 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=48.1
Q ss_pred CcccCcccCC-CcEEEEEcCCCchHHHHHHHHHhccc--------------------------------------CC-cc
Q 029723 71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR--------------------------------------DK-YS 110 (189)
Q Consensus 71 ~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll~--------------------------------------p~-G~ 110 (189)
...+++|.-. | +++|+|+|||||||||++|++++. +. +.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 3445555544 6 999999999999999999987764 33 67
Q ss_pred EEEeecCCCCCchHHHhhh-ceeccchh
Q 029723 111 LAAVTNDIFTKEDGEFLMR-NGALPEER 137 (189)
Q Consensus 111 I~i~g~di~~~~~~~~~~~-iG~v~Q~~ 137 (189)
+.++|.++......++.+. +.+++|..
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~ 156 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHS 156 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTC
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcc
Confidence 8888888754334444444 78888874
No 82
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=5.4e-13 Score=129.16 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 157 INLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 157 ~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LA 875 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLA 875 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHH
Confidence 4567899999986 67899999999999999874
No 83
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.30 E-value=3.2e-13 Score=120.82 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=50.1
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec---CCCCC-----chHHHhhhceeccch
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----EDGEFLMRNGALPEE 136 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~---di~~~-----~~~~~~~~iG~v~Q~ 136 (189)
.+++.-..+|++++|+|||||||||||++|+|+++|+ |.|.++|. ++... ....+++.++|++|.
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 3444333469999999999999999999999999999 99999987 44211 123356679999995
No 84
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.28 E-value=6.9e-13 Score=105.53 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHH
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI 157 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~ 157 (189)
..+|++++|+||||||||||+++|++++.| .|.+...+..-..... .. ..++..+... .....+..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~~~~~~~~----~~-----~~~~~~~~~~--~~~~~~~~~ 69 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDHYYKDLGH----LP-----LEERLRVNYD--HPDAFDLAL 69 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGGCBCCCTT----SC-----HHHHHHSCTT--SGGGBCHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCccccCccc----cc-----HHHhcCCCCC--ChhhhhHHH
Confidence 457899999999999999999999999876 3444433321100000 00 0011111110 011123456
Q ss_pred HHHHHhhcCCchhhccccccCChHHH
Q 029723 158 NLGPLEELSNLFKADLLLCESGGGNL 183 (189)
Q Consensus 158 v~~~L~~lgL~~~~~~~~~eLSGGqr 183 (189)
+.++++.+++.+..+.++.++|+|++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~s~g~~ 95 (211)
T 3asz_A 70 YLEHAQALLRGLPVEMPVYDFRAYTR 95 (211)
T ss_dssp HHHHHHHHHTTCCEEECCEETTTTEE
T ss_pred HHHHHHHHHcCCCcCCCcccCcccCC
Confidence 77788888877677778899999975
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.27 E-value=1.8e-12 Score=112.83 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=39.3
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
+.+.+.-..+|++++|+|||||||||||++|+|+++|+ |.|.+.|.+
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 33444333479999999999999999999999999999 999888864
No 86
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.23 E-value=6.2e-13 Score=114.13 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE---eecCCCCCchHHHhhhceeccchhH-----------HHHH--
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEERI-----------RAVE-- 142 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~~~-----------~~i~-- 142 (189)
+|++++|+|||||||||||++|+|+++++ |+|.+ .|..+++.. ..+...++||+|.|. +++.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~e~l~~~ 250 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEEEELGYT 250 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCHHHHHHH
Confidence 68999999999999999999999999998 99998 777765422 111223789988763 2221
Q ss_pred hc------CCCCC----ChHHHHHHHHHHHhhcCCchhhccccccCChHHHH
Q 029723 143 TG------GCPHA----AIREDISINLGPLEELSNLFKADLLLCESGGGNLQ 184 (189)
Q Consensus 143 ~g------~~~~~----~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq 184 (189)
+. ..|.+ ...+...++.++|+.++|.......+..|+.|++|
T Consensus 251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 10 00110 01122346889999999986555555666667776
No 87
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.21 E-value=5.6e-12 Score=102.88 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchhHH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR 139 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~ 139 (189)
++|++++|+||||||||||+++|+|+++| . |.|.+.+.+... ..+..++|+||++..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDE 73 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHH
Confidence 36999999999999999999999999986 4 888888876532 124579999998763
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.21 E-value=3.8e-12 Score=99.14 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=45.4
Q ss_pred ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
+.++|. .+|++++|+||||||||||+++|+|++ |+ |+|.+.+.++.. ..+.. .+++|.+.
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~~~~~---~~~~q~~~ 85 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--EYNIA---GKMIYHFD 85 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--EEEET---TEEEEEEE
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--eccCC---Ccceeccc
Confidence 344444 468999999999999999999999999 87 999999988742 11111 26778653
No 89
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.20 E-value=7.7e-12 Score=98.52 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
+|++++|+||||||||||+++|+++++ .+.+.+.++........+..++|+||++.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHH
Confidence 699999999999999999999999974 46666655543322233557899999876
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=2.1e-13 Score=106.62 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=41.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.+|++++|+||||||||||+++|+++ ++ |.|.+++.++.... ...+.++|++|...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~ 63 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ 63 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh
Confidence 46899999999999999999999998 55 88998876542111 11234678888643
No 91
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.19 E-value=4.3e-12 Score=108.39 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.3
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.|. +| +++|+|+|||||||||.+|+.++
T Consensus 19 ~l~~~-~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFS-DR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECC-SS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecC-CC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 34443 35 99999999999999999999654
No 92
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.17 E-value=1.4e-11 Score=111.86 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=51.8
Q ss_pred ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCc------hHHHhhhceeccchh
Q 029723 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEER 137 (189)
Q Consensus 73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~------~~~~~~~iG~v~Q~~ 137 (189)
.+++|. .+|++++|+|+|||||||||++|+|+++++ |+|.+++.|+.... ....++.|+|++|..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~ 356 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 356 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc
Confidence 345564 358999999999999999999999999988 99999988875431 111356799999974
No 93
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.17 E-value=9.6e-12 Score=96.93 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHHHHH
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL 159 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~~v~ 159 (189)
+|++++|+||||||||||++++.+ |...+. .+ . ..++++|++......+ ..+ +......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~-~d-------~---~~g~~~~~~~~~~~~~----~~~-~~~~~~~ 66 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK-----PTEVIS-SD-------F---CRGLMSDDENDQTVTG----AAF-DVLHYIV 66 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC-----GGGEEE-HH-------H---HHHHHCSSTTCGGGHH----HHH-HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc-----CCeEEc-cH-------H---HHHHhcCcccchhhHH----HHH-HHHHHHH
Confidence 699999999999999999998542 222221 11 1 1267777653111000 000 1111122
Q ss_pred HHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 160 GPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 160 ~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
..+...+.....+ ....+|+||||+++|+
T Consensus 67 ~~~~~~g~~~~~~-~~~~~s~g~~qrv~iA 95 (171)
T 4gp7_A 67 SKRLQLGKLTVVD-ATNVQESARKPLIEMA 95 (171)
T ss_dssp HHHHHTTCCEEEE-SCCCSHHHHHHHHHHH
T ss_pred HHHHhCCCeEEEE-CCCCCHHHHHHHHHHH
Confidence 2223345543333 3346699999999874
No 94
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=1.1e-12 Score=112.28 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=35.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc--------cCC-ccEEEeecCCCCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTK 121 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll--------~p~-G~I~i~g~di~~~ 121 (189)
++++|+|+|||||||||++|+++. .++ |+|.|++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~ 53 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDR 53 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCC
Confidence 589999999999999999999986 678 9999999887543
No 95
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=9.1e-12 Score=107.62 Aligned_cols=66 Identities=26% Similarity=0.190 Sum_probs=52.6
Q ss_pred ccCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHHhhhceeccchhH
Q 029723 73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERI 138 (189)
Q Consensus 73 ~~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~~~~iG~v~Q~~~ 138 (189)
.+++|. .+|++++|+|+|||||||||++|+|+++|+ |+|.|.+.++.+... ...++++++++|++.
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 455554 458999999999999999999999999998 999999998854221 123567999999754
No 96
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.14 E-value=2.5e-12 Score=108.00 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=67.5
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhHHH----HHhcCCCCC
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA----VETGGCPHA 149 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~----i~~g~~~~~ 149 (189)
++.+..+.. ++|+||||||||||+++|++.+.+ +.|.+++.++......+..+.++++||..... +.+-....+
T Consensus 38 ~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 38 ALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL 115 (274)
T ss_dssp HTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTT
T ss_pred HcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhh
Confidence 344444322 899999999999999999998866 68999998886555556667889999875211 000000000
Q ss_pred ChHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhcC
Q 029723 150 AIREDISINLGPLEELSNLFKADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 150 ~~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~i 189 (189)
......... . .+....++++.+|||||+|++.|+
T Consensus 116 ~~~r~~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 116 CPRRSDRET----G--ASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp CC---------------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred hcccCCCcc----h--HHHHHHHHHHHhhhcccccCCEEE
Confidence 000010000 1 123356778899999999987764
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=5.4e-12 Score=100.89 Aligned_cols=53 Identities=23% Similarity=0.062 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
|++++|+||||||||||+++|+|+++ + | |.+++.++... ...++.+||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 68999999999999999999999999 7 9 99999877432 23567899999974
No 98
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.11 E-value=1e-11 Score=107.10 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE 135 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q 135 (189)
.+|++++|+|||||||||||++|+|+++|+ |.|.+++.+..... ..++.++++++
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~~~~g 224 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQLFFG 224 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEEEECB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEEEEeC
Confidence 358999999999999999999999999998 99999987532221 23446777753
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.11 E-value=4.9e-11 Score=103.01 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=48.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHH----Hhhh--ceeccchh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMR--NGALPEER 137 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~----~~~~--iG~v~Q~~ 137 (189)
.+|++++|+||||||||||+++|+++++|+ |+|.+.+.|+......+ +++. +.+++|..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~ 192 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY 192 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc
Confidence 469999999999999999999999999998 99999999987655433 2333 44777754
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.10 E-value=2.4e-11 Score=96.88 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=33.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccC-------C-ccEEEeecCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-------K-YSLAAVTNDI 118 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-------~-G~I~i~g~di 118 (189)
.++|++++|+||||||||||+++|++++.+ . +.+++++.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 457999999999999999999999996554 3 3667776653
No 101
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.10 E-value=4.3e-11 Score=115.46 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCch-hhccccccCChHHHHhhhcC
Q 029723 156 SINLGPLEELSNLF-KADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 156 ~~v~~~L~~lgL~~-~~~~~~~eLSGGqrq~~~~i 189 (189)
.++.++|+.++|.. ..++++.+|||||||||+|+
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LA 817 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLA 817 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHH
Confidence 45678899999975 46789999999999999874
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.10 E-value=2.9e-11 Score=97.56 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=43.8
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHH--hcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALC--KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~--Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
-.++|++++|+||||||||||+++|+ +++++. +.+++.+.+. .....++.+.+++++|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 88 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGWDFEKY 88 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTCCHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-HHHHHHHHHHcCCChHHH
Confidence 34689999999999999999999999 664555 6666665543 122234456789988875
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.09 E-value=9.5e-12 Score=99.50 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.5
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccC---C-ccEEEeecCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDI 118 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p---~-G~I~i~g~di 118 (189)
..+|++++|+||||||||||+++|+++++| + |.|.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 457999999999999999999999999985 4 6666666554
No 104
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.07 E-value=4.8e-12 Score=104.21 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=40.6
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchH--------HHhhhceeccch
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG--------EFLMRNGALPEE 136 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~--------~~~~~iG~v~Q~ 136 (189)
+++|.. ++++|+|||||||||||++|+|++.|+ |.|.+++.++....+. .++..++|++|.
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456654 789999999999999999999999998 9999999887332211 124578999975
No 105
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=2.4e-12 Score=109.53 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=44.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhc-ccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCCh---HHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI---REDISI 157 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl-l~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~---~~d~~~ 157 (189)
.++|+|+|||||||||++|+|. +.|+ | |.+.+.++.. ... .+.+++++|.....+.+........ ....++
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~--t~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER--TVQ-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC--cce-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 3599999999999999999997 7777 8 8887776632 111 3467888886531111110000000 000011
Q ss_pred HHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 158 NLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 158 v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
...+++. +....+.++.++|+||||++.+
T Consensus 96 ~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ 124 (301)
T 2qnr_A 96 FKTIISY--IDEQFERYLHDESGLNRRHIID 124 (301)
T ss_dssp CTTHHHH--HHHHHHHHHHHHTSSCCTTCCC
T ss_pred HHHHHHH--HHHHHHHHHHHhCHHhhhhhhh
Confidence 1111221 2234568899999999999875
No 106
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.04 E-value=4.5e-11 Score=108.25 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=42.1
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK 121 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~ 121 (189)
..+++|.-+.++++|+|||||||||||++|+|+++|+ |+|.++|.++...
T Consensus 20 l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 20 FFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp EEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred ccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 4455554433999999999999999999999999998 9999999988643
No 107
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.04 E-value=2.1e-10 Score=90.93 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.+|++++|+|+||||||||+++|++.+ |.+.+++.++.. ........+++++|+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~-~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS-PENIATMQRGIPLTDED 82 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC-HHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc-HHHHHHHhcCCCCCCcc
Confidence 468999999999999999999999987 789999887742 11123346788888754
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.03 E-value=9.4e-11 Score=102.06 Aligned_cols=57 Identities=18% Similarity=0.058 Sum_probs=43.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceecc-chh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EER 137 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~-Q~~ 137 (189)
.+|++++|+|||||||||||++|+++++|+ |.|.+.+..- ......+..+++++ |++
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--LFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC--CCCTTCSSEEEEECC---
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc--cCccccCCEEEEeecCcc
Confidence 368999999999999999999999999998 9999987432 22222445788998 653
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=6.3e-12 Score=107.81 Aligned_cols=106 Identities=11% Similarity=-0.091 Sum_probs=58.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc----cCC-ccEEEeecCCCCCchHHHhhhceeccchhH------HHHHhcCCC-CC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------RAVETGGCP-HA 149 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll----~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~------~~i~~g~~~-~~ 149 (189)
+.++|+||||+|||||+++|++.+ .+. |.+.+.+.++...........|.|+.|... +++...... ..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI 131 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence 789999999999999999999998 444 655544443311000001245778877543 111111000 00
Q ss_pred C----hHHHHHHHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 150 A----IREDISINLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 150 ~----~~~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
. .......+...++.+.|.. ....+..||+|++||+.+
T Consensus 132 ~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 132 DIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp CC---------------CCCEEEE-EESCGGGSCHHHHTTCSE
T ss_pred ceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCc
Confidence 0 0112234445566666653 667788999999999864
No 110
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.02 E-value=2e-10 Score=104.20 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCcc--EEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCChHHHHH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYS--LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS 156 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~--I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~~~~d~~ 156 (189)
.+|++++|+|+||||||||+++|++++.+.|. +++...+. ...+...+ ..++ +.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~----~~~l~~~~----------~~~g----~~------ 334 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES----RAQLLRNA----------YSWG----MD------ 334 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC----HHHHHHHH----------HTTS----CC------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC----HHHHHHHH----------HHcC----CC------
Confidence 47999999999999999999999999988764 34443321 11111110 0111 11
Q ss_pred HHHHHHhhcCCchhhccccccCChHHHHhhhc
Q 029723 157 INLGPLEELSNLFKADLLLCESGGGNLQTISF 188 (189)
Q Consensus 157 ~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~~ 188 (189)
+.+ +..+++....+..+.+||+||+|++++
T Consensus 335 -~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~ 364 (525)
T 1tf7_A 335 -FEE-MERQNLLKIVCAYPESAGLEDHLQIIK 364 (525)
T ss_dssp -HHH-HHHTTSEEECCCCGGGSCHHHHHHHHH
T ss_pred -HHH-HHhCCCEEEEEeccccCCHHHHHHHHH
Confidence 111 234566656778899999999999876
No 111
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.98 E-value=2.4e-10 Score=97.14 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEE---eecCCCCCchHHHhhhceeccch
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAA---VTNDIFTKEDGEFLMRNGALPEE 136 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i---~g~di~~~~~~~~~~~iG~v~Q~ 136 (189)
.+|++++|+|+||||||||+++|++++. |+ |+|.+ ++... .. ..++.++++ |.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~ 136 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN-QVLKERGLM-KK 136 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH-HHHHHHTCT-TC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH-HHHHhCCEe-ec
Confidence 5689999999999999999999999988 87 99999 55543 22 334567777 54
No 112
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.96 E-value=1.9e-10 Score=96.07 Aligned_cols=48 Identities=17% Similarity=0.432 Sum_probs=41.2
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccC--CccEEEeecCCC
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIF 119 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~G~I~i~g~di~ 119 (189)
...+++ ..+|++++|+|||||||||||++|+|+++| .|+|.+++.++.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 344555 568999999999999999999999999987 399999998774
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.96 E-value=7.5e-11 Score=92.83 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcc-----cCC-ccEEE
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAA 113 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll-----~p~-G~I~i 113 (189)
.+|++++|+|+||||||||++.|+|.. .|+ |.+.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 468999999999999999999999988 666 76543
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.95 E-value=6.2e-10 Score=92.66 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=59.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccch-hHHHH-----HhcCCCCCChH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE-RIRAV-----ETGGCPHAAIR 152 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~-~~~~i-----~~g~~~~~~~~ 152 (189)
.+|++++|+||||||||||++.|++.+. .|.+. .|.++.. ...+.|+..+ +...+ .++. .+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~------~~~v~~~~~e~~~~~~~~r~~~~g~--~~--- 94 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP------TGPVIYLPAEDPPTAIHHRLHALGA--HL--- 94 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC------CCCEEEEESSSCHHHHHHHHHHHHT--TS---
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC------CccEEEEECCCCHHHHHHHHHHHHh--hc---
Confidence 4899999999999999999999998665 34432 2332210 1234444332 11111 1111 11
Q ss_pred HHHHHHHHHHhhcCCchhhccccccCChHHHHhhh
Q 029723 153 EDISINLGPLEELSNLFKADLLLCESGGGNLQTIS 187 (189)
Q Consensus 153 ~d~~~v~~~L~~lgL~~~~~~~~~eLSGGqrq~~~ 187 (189)
....+.++++.+.+....++.+..||+||+|++.
T Consensus 95 -~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 95 -SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLK 128 (279)
T ss_dssp -CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHH
T ss_pred -ChhhhhhccCceEEeecCCCCcccCCHHHHHHHH
Confidence 1233556677887776677889999999988763
No 115
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.95 E-value=5.2e-10 Score=93.63 Aligned_cols=61 Identities=10% Similarity=-0.022 Sum_probs=44.8
Q ss_pred CcccCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceecc
Q 029723 71 PILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALP 134 (189)
Q Consensus 71 ~~~~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~ 134 (189)
..+++.+ ..+|++++|+||||||||||+++|++++.++ | .|.+.+.+. ...++.+++.+++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLH 87 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHH
Confidence 3444444 3469999999999999999999999999887 7 788777654 2334444444443
No 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=3.3e-10 Score=91.61 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH-hccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALC-KFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~-Gll~ 106 (189)
+|++++|+||||||||||+++|+ ++++
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 69999999999999999999999 9984
No 117
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.92 E-value=3.3e-10 Score=90.26 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+|++++|+||||||||||+++|+++++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999999999875
No 118
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.92 E-value=2.1e-10 Score=94.70 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=49.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEE--------EeecCCC-CCchHHHhhhceeccchh
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIF-TKEDGEFLMRNGALPEER 137 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~--------i~g~di~-~~~~~~~~~~iG~v~Q~~ 137 (189)
..+|++++|+||||||||||+++|+ |+..++ |.|+ ++|.++. .....++++.+++++|..
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 3578999999999999999999999 998888 9998 7777773 234556778899988653
No 119
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.89 E-value=6.3e-10 Score=87.33 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
|++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999844
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.88 E-value=9.8e-10 Score=84.23 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDIF 119 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di~ 119 (189)
+|++++|+||||||||||+++|++.+.+.| .+++.+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 799999999999999999999999988777 6777776664
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.86 E-value=1.2e-10 Score=107.85 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=37.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEeecCCCCCc---hHHHhhhceeccchh
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKE---DGEFLMRNGALPEER 137 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g~di~~~~---~~~~~~~iG~v~Q~~ 137 (189)
.++|+|||||||||||++|+|++.| + |.|.+++.++.... ..++++.++|+||++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence 4999999999999999999999988 6 99999988752111 234567899999975
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.86 E-value=2e-10 Score=95.42 Aligned_cols=53 Identities=30% Similarity=0.189 Sum_probs=39.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
+.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA 128 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999999999999999875 578888887653222223344567777764
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.84 E-value=2.3e-09 Score=86.00 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=43.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHh--cccC-----C-ccEEEeecCCCCC-chHHHhhhceeccchh
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCK--FLRD-----K-YSLAAVTNDIFTK-EDGEFLMRNGALPEER 137 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p-----~-G~I~i~g~di~~~-~~~~~~~~iG~v~Q~~ 137 (189)
.++|++++|+||||||||||++.|++ ++++ . +.+++.+.+.... ...++.+.+++.+|+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 89 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV 89 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHH
Confidence 35799999999999999999999999 5554 4 6777777663221 1223455788877653
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.83 E-value=9e-10 Score=96.33 Aligned_cols=54 Identities=15% Similarity=0.400 Sum_probs=44.5
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccC--CccEEEeecCCCCCchHHHhhhceeccc
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGALPE 135 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~G~I~i~g~di~~~~~~~~~~~iG~v~Q 135 (189)
..+|++++|+|||||||||||++|+++++| .|.|.+.+.++. . .++..+++++|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q 188 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQ 188 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEe
Confidence 457899999999999999999999999987 399988887663 1 23456888888
No 125
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.83 E-value=1.8e-10 Score=94.23 Aligned_cols=53 Identities=30% Similarity=0.189 Sum_probs=38.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
+.|+||||||||||+++|++.+. .+.|.+++.++......+..+.++++||..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA 104 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999999999999999875 578888887653222223344566676653
No 126
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.82 E-value=8e-10 Score=96.28 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.8
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|. +| +++|+|||||||||||.+|+..+
T Consensus 18 ~i~~~-~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 18 DIEFQ-SG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECC-SE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEecC-CC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 34444 35 88899999999999999999543
No 127
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.82 E-value=1.3e-09 Score=86.37 Aligned_cols=59 Identities=20% Similarity=0.042 Sum_probs=43.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccch
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~ 136 (189)
..+|++++|+||||||||||++.|++.+.+. +.|.+.+.+.......++...+++.+|.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGG
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHH
Confidence 3479999999999999999999999887766 8898888765321112223356665554
No 128
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.81 E-value=5.9e-10 Score=96.53 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-----ccEEEe----ecCCCCCchHHHhhhceeccchhH
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAV----TNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-----G~I~i~----g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
++.++|+||||||||||+++|+|+++|+ |+|.++ +.++ .....++ +.|++++|++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 8999999999999999999999999874 677663 3333 2233334 56888888764
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.80 E-value=4.3e-10 Score=91.87 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH---hcccCC-ccEEEeecCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~---Gll~p~-G~I~i~g~di 118 (189)
++++++|+||||||||||+++|+ |+..++ |+|.+.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~ 68 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKA 68 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhc
Confidence 46899999999999999999999 999888 9988876543
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.80 E-value=3.5e-09 Score=93.69 Aligned_cols=108 Identities=18% Similarity=0.059 Sum_probs=57.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHH--HhcccCC-c-----cEEEeecCCCCC-chHHHhhhceeccchhHHHHHhcCCCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLAL--CKFLRDK-Y-----SLAAVTNDIFTK-EDGEFLMRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L--~Gll~p~-G-----~I~i~g~di~~~-~~~~~~~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
.++|+++.|+||||||||||++.| .++++++ | .|+|++.+.... ...++++.+++.+|...+++.+.....
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 447999999999999999999955 4566552 3 677777664221 122345678887775434443332211
Q ss_pred CC-hHHHHHHHHHHHhhcC-----CchhhccccccCCh----HHHHh
Q 029723 149 AA-IREDISINLGPLEELS-----NLFKADLLLCESGG----GNLQT 185 (189)
Q Consensus 149 ~~-~~~d~~~v~~~L~~lg-----L~~~~~~~~~eLSG----Gqrq~ 185 (189)
.. ..+...++.+++.... ++.....+..++|| ++||+
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~ 301 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQM 301 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHH
Confidence 10 0112233444444433 33344455567775 67665
No 131
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.78 E-value=3.6e-09 Score=83.03 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.+|++++|+||||||||||+++|++++.|+ + .+........ . .....++|+||++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR---E-GEVDGVDYFFKTRD 61 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC---T-TCCBTTTBEECCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC---C-CccCCCceEEcCHH
Confidence 368999999999999999999999998776 5 3322222110 0 11234778887764
No 132
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.1e-09 Score=97.75 Aligned_cols=60 Identities=22% Similarity=0.080 Sum_probs=38.1
Q ss_pred cccCcccC-CCcE--EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 72 ILSRNFNE-RAFT--VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 72 ~~~~~f~~-~Gei--vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
..+++|.- +|++ ++|+|||||||||||++|+|+.- .+.++........++.++|++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-------~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-------EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-------cCCcCCCCCccceEeeEEEEeecCc
Confidence 55666665 4899 99999999999999999999841 2222211111123457899999764
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.74 E-value=2.4e-09 Score=83.55 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
|++++|+||||||||||+++|++ +. |.+.+++.++.. ...+++++|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~------~~~~~~~~~~~ 50 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH------MVVGGYRPPWE 50 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT------TCCTTCCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh------hhccccccCcc
Confidence 57899999999999999999987 34 788888765421 12356666643
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.73 E-value=2.7e-09 Score=84.49 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccE--EEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I--~i~g~di 118 (189)
.+|++++|+|+||||||||+++|++.+...|.+ .+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 569999999999999999999999998844887 8887665
No 135
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.72 E-value=1.9e-09 Score=99.05 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=56.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEE-EeecCCCC-------CchH---HHhhhceeccchhHH--HHH
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLA-AVTNDIFT-------KEDG---EFLMRNGALPEERIR--AVE 142 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~-i~g~di~~-------~~~~---~~~~~iG~v~Q~~~~--~i~ 142 (189)
..+|++++|+|+||||||||+++|++++.|+ | .|. +++.++.. .... ...+.+++++|+... ++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~iv 445 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIA 445 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 4479999999999999999999999999987 5 686 66544311 1121 234567888886431 111
Q ss_pred hcCCCCCChHHHHHHHHHHHhhcC
Q 029723 143 TGGCPHAAIREDISINLGPLEELS 166 (189)
Q Consensus 143 ~g~~~~~~~~~d~~~v~~~L~~lg 166 (189)
+... ........+++.++|+.++
T Consensus 446 i~~~-~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 446 ICAP-IAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp EECC-CCCCHHHHHHHHHHHHTTS
T ss_pred EEec-CCccHHHHHHHHHHHHHcC
Confidence 1111 1112345567778888776
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.70 E-value=2.4e-09 Score=90.73 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G 109 (189)
.++.+++|+|++|||||||+++|.+++.+.|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 3578999999999999999999999997643
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.65 E-value=1.2e-08 Score=92.71 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
.+|++++|+|||||||||||++|+++++|+ |.|.+.+.+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 468999999999999999999999999998 989988765
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.64 E-value=1.8e-08 Score=78.66 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccC-C-ccEEEee
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVT 115 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~-G~I~i~g 115 (189)
+|++++|+||||||||||+++|++++++ . +.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 5899999999999999999999998864 3 6665443
No 139
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.64 E-value=1.5e-08 Score=80.39 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=37.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
.++++++|+|+||||||||+++|++++++. |.|.+.+.|...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 468999999999999999999999999877 889888777643
No 140
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.62 E-value=4.1e-09 Score=102.86 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCcccCcccCC--------CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 70 PPILSRNFNER--------AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 70 ~~~~~~~f~~~--------GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...|+++|... |++++|+||||||||||||+| |++.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 45677777643 799999999999999999999 9876
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.62 E-value=2.9e-08 Score=76.30 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=38.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHh-hhceeccch
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL-MRNGALPEE 136 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~-~~iG~v~Q~ 136 (189)
.+|++++|+|+||||||||+++|++.+ |.+.+++.++.. ...+. ..+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 358999999999999999999999876 678888766632 11122 245666665
No 142
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.61 E-value=1.3e-08 Score=88.65 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCC
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDI 118 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di 118 (189)
...++++++|+|||||||||||++|+|+++|+ |.|...+.++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 44567899999999999999999999999875 5565555444
No 143
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.60 E-value=2.1e-09 Score=103.88 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 70 ~~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
...|+++|.. +|++++|+||||||||||||+|+++
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3567888875 5899999999999999999999865
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.57 E-value=2.5e-09 Score=95.08 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.5
Q ss_pred cCcccCC-CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 74 SRNFNER-AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 74 ~~~f~~~-GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+++|+-+ +++++|+|+|||||||||++|++..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3444443 6899999999999999999999984
No 145
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.55 E-value=2.2e-08 Score=78.32 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccC-----------C-ccEEEeecC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRD-----------K-YSLAAVTND 117 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p-----------~-G~I~i~g~d 117 (189)
-.++|+|+|||||||||+.+++...+ . |.|.+++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 46899999999999999999998764 3 566666544
No 146
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.54 E-value=3.8e-08 Score=79.73 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=42.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCC------CchHH----HhhhceeccchhH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT------KEDGE----FLMRNGALPEERI 138 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~------~~~~~----~~~~iG~v~Q~~~ 138 (189)
.+|++++|+|+||||||||+++|+++ .|+|.+.+.+... ....+ .++.+++++|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 84 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYV 84 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHH
Confidence 46899999999999999999999998 6789998876531 11111 1346788888654
No 147
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.51 E-value=3.1e-08 Score=85.80 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcc--cCC-----cc-EEEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-----YS-LAAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll--~p~-----G~-I~i~g~di 118 (189)
++|+++.|+||||||||||++.|++.. +|+ |. |+|++.+.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 479999999999999999999999987 443 46 78887765
No 148
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.51 E-value=4.8e-08 Score=78.66 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+|++++|+||||||||||++.|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999999875
No 149
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.51 E-value=9.2e-09 Score=82.07 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc---cCC-ccEEE--------eecCCCC-CchHHHhhhceeccch
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAA--------VTNDIFT-KEDGEFLMRNGALPEE 136 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll---~p~-G~I~i--------~g~di~~-~~~~~~~~~iG~v~Q~ 136 (189)
+.+++|+|++|||||||+++|++.+ .++ |.+.. .+.++.. ....++++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 4689999999999999999999876 456 87776 4555421 1223455678887765
No 150
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=8.6e-08 Score=76.48 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
.+|++++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.48 E-value=1.2e-07 Score=80.52 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=40.1
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c-cEEEeecCCCCC
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTK 121 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G-~I~i~g~di~~~ 121 (189)
..|..+|++++|+|+|||||||+++.|++.+.++ | +|.+.+.|....
T Consensus 99 ~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 99 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 3345678999999999999999999999999875 7 899998887543
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.46 E-value=9.1e-08 Score=73.94 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC-cc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YS 110 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~ 110 (189)
.+++|+|||||||||||++|++++.+. +.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 399999999999999999999998775 54
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=1.5e-07 Score=80.79 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=48.4
Q ss_pred cCccc-CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCch----HHH-----hhhceec-cch
Q 029723 74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEE 136 (189)
Q Consensus 74 ~~~f~-~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~----~~~-----~~~iG~v-~Q~ 136 (189)
+++|. .++++++|+|+||+||||++..|++.+.+. ++|.+.+.|+..... ..+ +.++.++ +|.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 45554 458999999999999999999999999887 899999999854321 122 3467788 553
No 154
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=82.31 Aligned_cols=41 Identities=32% Similarity=0.564 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
++.+++|+|+|||||||||+.|++.+.++ ++|.|.+.|+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 47899999999999999999999999887 899999988754
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.43 E-value=1.6e-07 Score=80.82 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=33.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc--CC-ccEEEeecCCCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFT 120 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~--p~-G~I~i~g~di~~ 120 (189)
.+++|+||||||||||+++|.+++. |+ |.+.+...|...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4899999999999999999999987 45 788887777643
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.42 E-value=1.5e-07 Score=79.59 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=41.8
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
.+++|. +|++++|+|+||+||||++..|++++.+. ++|.+.+.|+..
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 356666 89999999999999999999999999887 899999998854
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.42 E-value=1.4e-07 Score=75.61 Aligned_cols=60 Identities=17% Similarity=0.003 Sum_probs=39.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHH-HhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 78 NERAFTVGIGGPVGTGKTALMLAL-CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L-~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
.++|+++.|+||||||||||+..+ ....+..+.+.+...+.......++.+.+|+.+|+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHH
Confidence 347999999999999999995544 555555556666655543222223344678877764
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.40 E-value=1e-07 Score=73.68 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCc--cEEEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G--~I~i~g~di 118 (189)
.+|++++|+|++||||||++++|++.+++.| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3689999999999999999999999887665 455565433
No 159
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.39 E-value=1.7e-07 Score=80.02 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=38.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
.++++++|+|+|||||||+++.|+++++++ ++|.+.+.|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 468999999999999999999999999888 899999988754
No 160
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.37 E-value=1.1e-07 Score=90.27 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=34.5
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhccc-CC-ccE
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSL 111 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I 111 (189)
...++++|. |++++|+||||||||||||+|+|+.. +. |.+
T Consensus 567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred eEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 466788888 99999999999999999999999864 55 754
No 161
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.35 E-value=1.9e-07 Score=89.05 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=32.3
Q ss_pred CCcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 70 ~~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
...|+++|..+|++++|+||||||||||||+|+|+.
T Consensus 596 ~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 596 FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 356788888779999999999999999999999975
No 162
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.32 E-value=2.3e-07 Score=70.81 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g 115 (189)
+.+++|+|+||||||||+++|++.+.+ +.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~---~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM---EFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC---EEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC---CEEec
Confidence 578999999999999999999998753 44543
No 163
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.32 E-value=1.1e-07 Score=73.67 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-c
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y 109 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G 109 (189)
+|+.++|+||||+|||||+++|++.+.+. |
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999998754 5
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=2.3e-07 Score=78.66 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh-cccCC-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 83 TVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~G-ll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
.+.|+||||+|||||+++|++ ++.|+ |.+.+++.++... ......+++++|..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPY 92 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccc
Confidence 389999999999999999999 77787 9999988765321 12245677776654
No 165
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.29 E-value=4.4e-07 Score=80.06 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHh------------cccCC-ccEEEee
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCK------------FLRDK-YSLAAVT 115 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~G------------ll~p~-G~I~i~g 115 (189)
.+|.+++|+|+|||||||||++|+| .+.|+ |.|.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 4689999999999999999999999 45677 8888765
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=2e-07 Score=79.38 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCcE--EEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 79 ERAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 79 ~~Gei--vgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
..|++ +.|.||||+|||||++++++.+.+. +.+.+.+.+.
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 35666 9999999999999999999988765 5555555444
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=4.9e-07 Score=71.27 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=24.1
Q ss_pred CcccCcccC-CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 71 ~~~~~~f~~-~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
...+++|.- ++.++.|+|++|||||||.+.|+..+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445666664 47999999999999999999999866
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.23 E-value=6.2e-07 Score=70.62 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=28.9
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g 115 (189)
.++|++++|+||||||||||++.|++ .+.+.+.+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEE
Confidence 45799999999999999999999999 4344454443
No 169
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.22 E-value=5.2e-07 Score=82.30 Aligned_cols=66 Identities=23% Similarity=0.213 Sum_probs=37.6
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.++.+..+|++++|+||||+|||||+++|++++.+. +.|.+.+......-....++.+|++++...
T Consensus 100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~ 166 (543)
T 3m6a_A 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRII 166 (543)
T ss_dssp HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHH
T ss_pred HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHH
Confidence 344555589999999999999999999999999877 777765532211111122346777766544
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.20 E-value=4.1e-07 Score=71.07 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+|||||||||+.|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999975
No 171
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.19 E-value=8.1e-07 Score=76.32 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=38.6
Q ss_pred cCcc-cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 74 SRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 74 ~~~f-~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
++.+ ..++.+++|+|+||+|||||++.|++.+.+. +++.+.+.|+.+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 3344 3457999999999999999999999999877 888888877743
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.17 E-value=3.5e-07 Score=79.67 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred CCc-EEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAF-TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~Ge-ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+. +++|+|+|||||||||+.|++...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 353 499999999999999999999765
No 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.12 E-value=1.3e-06 Score=77.02 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
++++++|+|||||||||||++|++++.++
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 47999999999999999999999988663
No 174
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=77.87 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=26.2
Q ss_pred CcccCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 71 ~~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+..+++|. ++|+|+|||||||||++|+|+..+.
T Consensus 26 vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~~~ 58 (418)
T 2qag_C 26 VKRGFEFT-----LMVVGESGLGKSTLINSLFLTDLYS 58 (418)
T ss_dssp CC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCCCC
T ss_pred EecCCCEE-----EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44445544 5999999999999999999998753
No 175
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.08 E-value=1.4e-06 Score=84.27 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=32.3
Q ss_pred CCcccCcccCC-CcEEEEEcCCCchHHHHHHHH--------HhcccCC
Q 029723 70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLAL--------CKFLRDK 108 (189)
Q Consensus 70 ~~~~~~~f~~~-GeivgLiGpNGSGKTTLL~~L--------~Gll~p~ 108 (189)
...|+++|... |++++|+||||||||||||+| +|...|.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa 697 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC 697 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 35678888865 899999999999999999999 6665553
No 176
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.08 E-value=1.8e-06 Score=67.00 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723 76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 76 ~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~ 114 (189)
....+|.++.|+|++||||||+++.|+..+.+. +.+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 334468999999999999999999999988766 666544
No 177
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.07 E-value=1.8e-06 Score=68.04 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
++.+++|+|++|||||||+++|++.++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999999763
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=2e-06 Score=74.92 Aligned_cols=57 Identities=21% Similarity=0.091 Sum_probs=41.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccch
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE 136 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~ 136 (189)
.++|+++.|+||||||||||+..|+..+.+. |.+.+....-. . ...+.+++|+.+|+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s-~-~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA-L-DPVYAKNLGVDLKS 115 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-C-CHHHHHHHTCCGGG
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc-c-chHHHHHcCCchhh
Confidence 3478999999999999999999999988766 77655443321 1 22355667776554
No 179
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.06 E-value=3.2e-06 Score=75.28 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=41.1
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
.++|. ++++++|+|+|||||||++..|++.+.+. ++|.+.+.|+..
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 45666 78999999999999999999999999988 899999998854
No 180
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.00 E-value=3.4e-06 Score=71.51 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=40.5
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK 121 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~ 121 (189)
++|..++.+++|+|+||+||||++..|++.+.+. ++|.+.+.|+...
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 4455558999999999999999999999999887 8999999987643
No 181
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.98 E-value=5.3e-06 Score=76.38 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=41.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC--ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~--G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
..|+.+.|+||||+|||||+++|++++++. +.+.+.+...... ...+.++++..
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 357899999999999999999999999876 6777776655322 22466666554
No 182
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.98 E-value=6.3e-06 Score=71.80 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=23.9
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
..+|.-...+++|+|||||||||||++|++
T Consensus 19 ~~~~~~~~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCCeEEEECCCCCChhHHHHHHHH
Confidence 334443323999999999999999999997
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.96 E-value=3.8e-06 Score=66.05 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
No 184
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.95 E-value=4.9e-06 Score=65.29 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
..+++|+|++|||||||.+.|+..+ |.+.++..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence 4689999999999999999999876 4455555444
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.95 E-value=8.7e-06 Score=72.39 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=34.4
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccC-Cc-cEEEeecCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDI 118 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G-~I~i~g~di 118 (189)
-.+|+++.|.|+||+|||||+..|+..+.+ .| .|.+...+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 347999999999999999999999987765 35 788887665
No 186
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.94 E-value=9e-06 Score=66.08 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA 113 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i 113 (189)
.+|.++.|.|++||||||+++.|+..+.+.+.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 36899999999999999999999998876224433
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.94 E-value=2.6e-06 Score=67.63 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-c--cEEEeec
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTN 116 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G--~I~i~g~ 116 (189)
..+|.++.|+|++||||||+.+.|...+.|. | .+.+++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 3468999999999999999999999998865 7 6666543
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.93 E-value=3.7e-06 Score=78.53 Aligned_cols=58 Identities=21% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC--C-ccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
.++..++|+|++|+|||||++.|++...+ . |+| +++..+......++.+.+.+.+|..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecce
Confidence 35789999999999999999999976654 4 887 5666665556666677777766643
No 189
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.91 E-value=5.6e-06 Score=63.04 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..+.+|+|||||||||||.+|+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998543
No 190
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.91 E-value=7.6e-06 Score=74.23 Aligned_cols=53 Identities=30% Similarity=0.189 Sum_probs=38.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
+.|+||||+|||||+++|++.+. .+.+.+++.++.........+.+..+||..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a 119 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETA 119 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHHH
Confidence 88999999999999999999864 477888888775433323334455666653
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.89 E-value=5.7e-06 Score=64.80 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 029723 83 TVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~G 103 (189)
+++|+|+||||||||+++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 192
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.88 E-value=6.1e-06 Score=65.13 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+|.++.|+||+|||||||++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 578899999999999999999998764
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.86 E-value=6.7e-06 Score=72.10 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~ 137 (189)
++|++++|+||||||||||+++|++.+ .|.+...+ +.. ......++++||..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~--~~~---~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN--LPL---DRLNFELGVAIDQF 218 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS--SCT---TTHHHHHGGGTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe--ccc---hhHHHHHHHhcchh
Confidence 458999999999999999999999965 35554421 111 11223477888765
No 194
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.86 E-value=3.9e-06 Score=76.43 Aligned_cols=106 Identities=9% Similarity=-0.038 Sum_probs=60.6
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHh--cccCC-ccEEEeecCCCCCchHHHh---hhceeccchhHHHHHhcCCCC
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFTKEDGEFL---MRNGALPEERIRAVETGGCPH 148 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p~-G~I~i~g~di~~~~~~~~~---~~iG~v~Q~~~~~i~~g~~~~ 148 (189)
.++. ++..+.|+|++||||||+|++|+. +.+.+ +.+.+...|........+. .-.+.|.+++......-.
T Consensus 162 ldL~-~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~--- 237 (512)
T 2ius_A 162 ADLA-KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR--- 237 (512)
T ss_dssp EEGG-GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH---
T ss_pred EEcc-cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH---
Confidence 3343 367899999999999999999875 44556 8888888877532211111 112234455432211100
Q ss_pred CChHHHHHHHHHHHhhcCCchhhc---cccccCChHHHHh
Q 029723 149 AAIREDISINLGPLEELSNLFKAD---LLLCESGGGNLQT 185 (189)
Q Consensus 149 ~~~~~d~~~v~~~L~~lgL~~~~~---~~~~eLSGGqrq~ 185 (189)
....+..+| .++|..+++.+... +....+|+||+|+
T Consensus 238 ~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~ 276 (512)
T 2ius_A 238 WCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIP 276 (512)
T ss_dssp HHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCccc
Confidence 011222233 46788888765332 2334678888764
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.84 E-value=8.2e-06 Score=72.85 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=38.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK 121 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~ 121 (189)
..++.+++|+|+|||||||++..|+..+.+. ++|.+...|+...
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 3457899999999999999999999999887 8999988887543
No 196
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.79 E-value=5.1e-06 Score=73.51 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=29.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc------------CC-ccEEEeecCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR------------DK-YSLAAVTNDI 118 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~------------p~-G~I~i~g~di 118 (189)
-.++|+|+||+||||||+.|+|... +. |.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4799999999999999999999853 34 6777777543
No 197
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.77 E-value=1.1e-05 Score=61.58 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999864
No 198
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.77 E-value=9.5e-06 Score=67.21 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.1
Q ss_pred CcccCcccC-C---CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 71 PILSRNFNE-R---AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 71 ~~~~~~f~~-~---GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+..+++|.- + |++++|+|++|||||||+++|++.+.
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445555553 3 89999999999999999999998654
No 199
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.77 E-value=1.4e-05 Score=62.68 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
.+++|+|++|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999987643
No 200
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.76 E-value=7.2e-06 Score=74.04 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=24.1
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
++.|.....+.+|+|+|||||||||.+|..+
T Consensus 53 ~~~l~f~~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3344433339999999999999999999665
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.75 E-value=9.3e-06 Score=77.35 Aligned_cols=59 Identities=24% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCCCCchHHHhhhceeccchhH
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~ 138 (189)
.+++.+.|+||||||||||+++|++.+... -+.+++.++......+..+.+..+||++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~-~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF-FFLINGPEIMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCE-EEEEEHHHHSSSSTTHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCc-EEEEEchHhhhhhhhhHHHHHHHHHHHHH
Confidence 457899999999999999999999987543 46777766644333344455666666543
No 202
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.69 E-value=1.9e-05 Score=67.54 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~G 103 (189)
..+.+|+|||||||||||.+|+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998854
No 203
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.69 E-value=2e-05 Score=59.48 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..++|+|++|+|||||++.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 204
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.67 E-value=2.3e-05 Score=62.46 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=22.8
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
++|. ..+.+|+|||||||||||.+|+-+
T Consensus 19 i~f~--~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 19 VEFK--EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EECC--SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEeC--CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4454 358999999999999999998643
No 205
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.67 E-value=3e-05 Score=67.02 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC-CccEEEeecCCCCCchHHHhhhceecc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGALP 134 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~i~g~di~~~~~~~~~~~iG~v~ 134 (189)
++|+++.|.||||||||||+..++..... .+.+.+...+.. ... .+.+.+|+.+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~-~~a~~lG~~~ 113 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDP-EYAKKLGVDT 113 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH-HHHHHTTCCG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCH-HHHHHcCCCH
Confidence 47999999999999999998888765543 467776655432 222 2344555433
No 206
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.66 E-value=2e-05 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999853
No 207
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.64 E-value=2.2e-05 Score=59.18 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
++.|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 208
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.63 E-value=2.6e-05 Score=62.92 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
++.+++|+|++||||||+.++|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.61 E-value=3.3e-05 Score=68.21 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
..+..++|+|+||+||||||++|++.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45778999999999999999999997
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.60 E-value=3.5e-05 Score=60.39 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=27.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCc-cEEEee
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVT 115 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~g 115 (189)
.+++|+|++|||||||+..|+..++..| +|.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4799999999999999999999887553 555444
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=2e-05 Score=63.99 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
-+.|+||||+|||||+++|++.+... -+.+++.++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~-~~~i~~~~~ 81 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP-FFTISGSDF 81 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC-EEEECSCSS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC-EEEEeHHHH
Confidence 47899999999999999999987532 355665555
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=3.4e-05 Score=58.78 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
..++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 213
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.56 E-value=3.6e-05 Score=59.09 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.55 E-value=7.5e-05 Score=58.06 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA 113 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i 113 (189)
++.++.|.|++||||||+.+.|+..+...|.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 4678999999999999999999987665454433
No 215
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.54 E-value=2.9e-05 Score=65.43 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+..+++|+|+||+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34689999999999999999999963
No 216
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.54 E-value=1.8e-05 Score=62.04 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+++|+|++|||||||++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887654
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=4.9e-05 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998654
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.53 E-value=4.4e-05 Score=57.07 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 029723 83 TVGIGGPVGTGKTALMLAL 101 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L 101 (189)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.51 E-value=4.5e-05 Score=62.34 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND 117 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~d 117 (189)
..+.++.|+|+||||||||.+.|+..+.. +.+.+++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHH
Confidence 34689999999999999999999987642 345555543
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.49 E-value=6e-05 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988655
No 221
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.49 E-value=4.8e-05 Score=58.86 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 222
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.47 E-value=7.7e-05 Score=64.03 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=26.5
Q ss_pred cccCcccCCCcEEEEEcCCCchHHHHHHHHHh--cccCC-ccE
Q 029723 72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSL 111 (189)
Q Consensus 72 ~~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G--ll~p~-G~I 111 (189)
..++++.-+ .++|+|++||||||||+.|+| +++.. |.+
T Consensus 27 l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 27 LPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp C----CCCC--EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccCC--EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 334445544 899999999999999999999 44444 544
No 223
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.46 E-value=7.2e-05 Score=59.20 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~G 103 (189)
+.+++|+|++||||||++++|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 224
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.46 E-value=9.1e-05 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
+..+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999985
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.45 E-value=8.6e-05 Score=57.65 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+|.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999999876
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=7.9e-05 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
++.+++|+|++||||||+.+.|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999876
No 227
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.43 E-value=9.3e-05 Score=64.07 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~ 116 (189)
.+.-+.|+|++|||||||++.|+..+.+. +.|.+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45678999999999999999999877766 77777653
No 228
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.43 E-value=7.6e-05 Score=57.37 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 229
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=5.5e-05 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.42 E-value=7.9e-05 Score=56.45 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 029723 82 FTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~G 103 (189)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 231
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.00011 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
-.++|+|++|+|||||++.|+|...+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 46899999999999999999997543
No 232
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.35 E-value=9.7e-05 Score=57.11 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=20.9
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.++++..+.-.++|+|++|+|||||++.+++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 15 ASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3555666666799999999999999999997
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.34 E-value=0.00015 Score=59.89 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEee
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT 115 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g 115 (189)
...+.|+||+|+|||||+++|+..+.+. +.+...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 3579999999999999999999998776 6555444
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.34 E-value=0.00012 Score=56.39 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998654
No 235
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.34 E-value=0.00016 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKY 109 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G 109 (189)
+++|.|++||||||+.+.|...++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999998775433
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.34 E-value=9.3e-05 Score=60.74 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
++.|+||||||||||.+.|+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999987543
No 237
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00012 Score=56.09 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987643
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00012 Score=56.11 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.++.|+|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998543
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=0.00012 Score=57.07 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+|.+++|+|++||||||+.+.|...+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987554
No 240
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.32 E-value=0.00012 Score=56.59 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.7
Q ss_pred cccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 76 NFNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 76 ~f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.|..+.-.++|+|++|+|||||++.+++
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 4455567799999999999999999975
No 241
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.31 E-value=0.00011 Score=60.54 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.31 E-value=0.00013 Score=56.93 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
++.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 243
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.30 E-value=0.0002 Score=53.74 Aligned_cols=27 Identities=41% Similarity=0.379 Sum_probs=23.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
..+...++|+|++|+|||||++.+++-
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999874
No 244
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.29 E-value=0.00013 Score=56.01 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 245
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.00012 Score=55.86 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
++.|+|++||||||+.+.|+..+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887653
No 246
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.27 E-value=0.00012 Score=56.88 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 247
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.00019 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.++.|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.26 E-value=0.00013 Score=57.80 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.|+||+|||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997654
No 249
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.26 E-value=0.00012 Score=63.28 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.5
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHH
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALC 102 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~ 102 (189)
.++|. ..+..|+|+|||||||||.+|+
T Consensus 20 ~i~f~--~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 20 RIKFE--KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEECC--SEEEEEEECTTSSHHHHHHHHH
T ss_pred EEecC--CCeEEEECCCCCCHHHHHHHHH
Confidence 34454 3689999999999999999997
No 250
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.24 E-value=0.00014 Score=59.79 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..+++|+||+|||||||.++|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998543
No 251
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.23 E-value=6.1e-05 Score=58.73 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=25.1
Q ss_pred ccCcccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 73 LSRNFNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 73 ~~~~f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
..++|..+.-.++|+|++|+|||||++.+++
T Consensus 17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445555555689999999999999999986
No 252
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.23 E-value=0.00021 Score=62.33 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~G 103 (189)
+..++|+|.+++|||||++.|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35689999999999999999998
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.23 E-value=0.00031 Score=62.87 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=35.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK 121 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~~ 121 (189)
.+..++.|+|++|+||||++..|+..+... .++.+...|....
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 356899999999999999999999988776 5788887777543
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.0002 Score=56.79 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++-++.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 255
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.22 E-value=0.00026 Score=55.07 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCC-ccEEE
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA 113 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i 113 (189)
..+.|.||+|+|||||+++|+..+... ..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 678999999999999999999887655 45543
No 256
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.21 E-value=0.00013 Score=55.72 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998654
No 257
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.20 E-value=0.00015 Score=63.17 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=24.2
Q ss_pred CCCcE--EEEEcCCCchHHHHHHHHHhccc
Q 029723 79 ERAFT--VGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 79 ~~Gei--vgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+|++ +.|+|++|||||||.++|++.+.
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35666 99999999999999999998753
No 258
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.20 E-value=0.00022 Score=56.01 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999999987654
No 259
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.20 E-value=0.00016 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
+++|+|++||||||+.+.|...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999887643
No 260
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.20 E-value=0.00019 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
--.++|+|+.|+|||||++.+++-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998753
No 261
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.00032 Score=55.02 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=27.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
.+++|+|++|+|||||++.|++.+.....+.+...+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 5799999999999999999988653323444444343
No 262
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00021 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.-.++|+|++|+|||||++.|++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999864
No 263
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.17 E-value=0.00021 Score=55.10 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+.+++|+|++||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.17 E-value=0.00018 Score=60.20 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEe
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV 114 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~ 114 (189)
.+.++.|+||||||||||.+.|+..++ .+.+.|+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is 65 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVID 65 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEe
Confidence 467899999999999999999987553 2444444
No 265
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.16 E-value=0.00021 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 266
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998764
No 267
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.15 E-value=0.00023 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.14 E-value=0.00023 Score=55.99 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 269
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.14 E-value=0.00025 Score=60.04 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.6
Q ss_pred CCc--EEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 80 RAF--TVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 80 ~Ge--ivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
.+. .+.|+||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 346 89999999999999999999988764
No 270
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.00024 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999973
No 271
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.12 E-value=0.00024 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|+.|+|||||++.+++-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 272
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.12 E-value=0.00015 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.+.-.++|+|++|+|||||++.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566799999999999999999984
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.12 E-value=0.00025 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.++.|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998644
No 274
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.00019 Score=60.34 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
..+..+.|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44688999999999999999999998754
No 275
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.12 E-value=0.00023 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|+.|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 276
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.11 E-value=0.00028 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998863
No 277
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.11 E-value=0.00028 Score=59.05 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEee
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g 115 (189)
..+..+.|.||+|+|||||+++|+..+. ..-+.+++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKG 82 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEh
Confidence 3567899999999999999999998763 23344443
No 278
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.00024 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997644
No 279
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.11 E-value=0.00035 Score=57.30 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+|.++.|.|++||||||+++.|...+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999877654
No 280
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.00026 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999864
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.10 E-value=0.00025 Score=55.36 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=21.4
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
+..+..+.-.++|+|++|+|||||++.+++-
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3444445567999999999999999999853
No 282
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.10 E-value=0.00024 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 283
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.10 E-value=0.00019 Score=62.05 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.++|+|++|+|||||++.|++...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999987643
No 284
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.10 E-value=0.00025 Score=59.01 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999963
No 285
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.10 E-value=0.00019 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999998754
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.09 E-value=0.00027 Score=55.65 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 287
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.09 E-value=0.0004 Score=59.63 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
+..+++|+|++|+|||||++.|+..+... -+|.+...|+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 34689999999999999999999877554 4666666664
No 288
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.09 E-value=0.00027 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 289
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.09 E-value=0.00026 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998643
No 290
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.09 E-value=0.00028 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 291
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.09 E-value=0.00028 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||++.+++-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 292
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.08 E-value=0.00028 Score=52.15 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|+.|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 293
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.15 E-value=8e-05 Score=57.84 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=23.6
Q ss_pred CcccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 75 RNFNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 75 ~~f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
..+..+.-.++|+|++|+|||||++.+++-
T Consensus 24 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 344445567999999999999999888753
No 294
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.08 E-value=0.00028 Score=52.83 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998754
No 295
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.0003 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 296
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.08 E-value=0.00026 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00033 Score=54.49 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998543
No 298
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00035 Score=53.81 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.-.++|+|++|+|||||++.+++-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00034 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 300
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.06 E-value=0.0003 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999986
No 301
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.06 E-value=0.00046 Score=61.19 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+|+.++|+|++|+|||||++.|++.+.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3599999999999999999999999764
No 302
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.05 E-value=0.00029 Score=56.97 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=25.9
Q ss_pred cCcccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 74 ~~~f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-..+...|..+.|+||+|||||||...|+...
T Consensus 27 a~~v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 27 GVLVDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp SEEEEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34455568889999999999999999988643
No 303
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.00024 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++-.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 304
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.05 E-value=4e-05 Score=73.55 Aligned_cols=99 Identities=11% Similarity=-0.077 Sum_probs=57.5
Q ss_pred CCchHHHHHHHHHhcc---------cCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcC-CCCCC--------
Q 029723 90 VGTGKTALMLALCKFL---------RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAA-------- 150 (189)
Q Consensus 90 NGSGKTTLL~~L~Gll---------~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~-~~~~~-------- 150 (189)
+-.+|+||.+.+.... ++. |.|.++|.+|.......+...++++.|.+.....+.. ...+.
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 350 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQ 350 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHH
Confidence 4568999998877643 345 7888988887432111122234444333211000000 00000
Q ss_pred --hHHHHHHHHHHHhhcCCchh-hccccccCChHHHHhhhcC
Q 029723 151 --IREDISINLGPLEELSNLFK-ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 151 --~~~d~~~v~~~L~~lgL~~~-~~~~~~eLSGGqrq~~~~i 189 (189)
..+...++. .|..++|... +++.+.+|||||+|||+|+
T Consensus 351 ~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA 391 (842)
T 2vf7_A 351 RMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLA 391 (842)
T ss_dssp HHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHH
Confidence 122334444 6889999864 7999999999999999874
No 305
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00029 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998654
No 306
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.05 E-value=0.00032 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 307
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.04 E-value=0.0003 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.00026 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
No 309
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.03 E-value=0.0003 Score=53.74 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
--.++|+|++|+|||||++.|++-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999753
No 310
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.03 E-value=8.5e-05 Score=70.75 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~ 119 (189)
++..+.|+||||+|||||+++|++.+.. .-+.+++.++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~-~~i~v~~~~l~ 548 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELL 548 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC-CCCCCCCSSST
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC-CEEEEechHhh
Confidence 5677899999999999999999998753 34555555543
No 311
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.02 E-value=0.00031 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468999999999999999999864
No 312
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.02 E-value=0.00033 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999974
No 313
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.00033 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46899999999999999998864
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.01 E-value=0.00027 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
+.-.++|+|++|+|||||++.+++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999976
No 315
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.01 E-value=0.00036 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.|++-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 316
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=2.9e-05 Score=75.09 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=52.2
Q ss_pred HHHHHHHhcccCC-ccEEEeecCCCCCchHHHhhhceeccchhHHHHHhcCCCCCC---hHHHHHHHHHHHhhcCCchh-
Q 029723 96 ALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IREDISINLGPLEELSNLFK- 170 (189)
Q Consensus 96 TLL~~L~Gll~p~-G~I~i~g~di~~~~~~~~~~~iG~v~Q~~~~~i~~g~~~~~~---~~~d~~~v~~~L~~lgL~~~- 170 (189)
|...|..+.++|+ +.|.|+|.+|.......+...+.|+.+ +.+....... ......+..++|..++|...
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~ 457 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN-----LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT 457 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS-----CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh-----ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence 3445556678888 999999988732211112223333211 0011111110 11223445678889999754
Q ss_pred hccccccCChHHHHhhhcC
Q 029723 171 ADLLLCESGGGNLQTISFI 189 (189)
Q Consensus 171 ~~~~~~eLSGGqrq~~~~i 189 (189)
+++++.+|||||||||+|+
T Consensus 458 l~r~~~~LSGGe~QRv~LA 476 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLA 476 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHH
T ss_pred ccCCcccCCHHHHHHHHHH
Confidence 6899999999999999874
No 317
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.01 E-value=0.00068 Score=54.50 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCc-cEEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAA 113 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i 113 (189)
+|.++.|.|++||||||+++.|...+...| .+.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 588999999999999999999998877653 4433
No 318
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.00 E-value=0.00035 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.|++-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999984
No 319
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.00 E-value=0.00036 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 320
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.00 E-value=0.00036 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
-.++|+|++|+|||||++.|.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4589999999999999999998654
No 321
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.00 E-value=0.00054 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
-..++|+|.+|+|||||++.++.-+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 36789999999999999999987654
No 322
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.00 E-value=0.00046 Score=56.83 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.++..+.|.||+|+|||||+++|++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999998653
No 323
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.00 E-value=0.00039 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 324
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.99 E-value=0.0003 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999853
No 325
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.99 E-value=0.00026 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999764
No 326
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.99 E-value=0.00033 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 327
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.98 E-value=0.0004 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.|+|+|.+|+|||||++.|++..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999864
No 328
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.98 E-value=0.00039 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999874
No 329
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.97 E-value=0.00031 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++-.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 330
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00041 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 331
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.96 E-value=0.0004 Score=58.52 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-+++|+|.+|+|||||++.|+|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999985
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.96 E-value=0.00042 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||++.+++-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 333
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.96 E-value=0.00038 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 334
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.96 E-value=0.00041 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998754
No 335
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.95 E-value=0.00043 Score=52.50 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.-.++|+|++|+|||||++.+++-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998743
No 336
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.00042 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998743
No 337
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.94 E-value=0.00043 Score=58.38 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.+++|+|.+|+|||||++.|++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999985
No 338
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.94 E-value=0.0005 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.096 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++-+++|+|++||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997543
No 339
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.94 E-value=0.0003 Score=57.41 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
+|.+|.|.|++||||||+++.|+..+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999887653
No 340
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.94 E-value=0.00041 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.665 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997743
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.94 E-value=0.00045 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 342
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.93 E-value=0.00047 Score=52.55 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.7
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
|..+.-.++|+|++|+|||||++.+++-
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 4455667999999999999999999953
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.93 E-value=0.0005 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...+.|.||+|+|||||++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999988763
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.93 E-value=0.00047 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.93 E-value=0.00049 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998654
No 346
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.93 E-value=0.00044 Score=57.92 Aligned_cols=28 Identities=36% Similarity=0.355 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+..+.|.||+|+|||||++.|+..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4578899999999999999999877543
No 347
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.93 E-value=0.00045 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.|++-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 348
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00043 Score=59.36 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
....++|+|+||+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999864
No 349
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.90 E-value=0.00052 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.+.|+|++|+|||||++.|++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999864
No 350
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.90 E-value=0.00045 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 351
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.90 E-value=0.00046 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 352
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.89 E-value=0.0005 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++-.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999999753
No 353
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00058 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
+|+.+.|+||+||||||++.+++-
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHh
Confidence 589999999999999998887653
No 354
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.89 E-value=0.00051 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998754
No 355
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.88 E-value=0.00077 Score=54.28 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCCc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY 109 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~G 109 (189)
+|.+|.|.|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999998887554
No 356
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.88 E-value=0.00051 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 357
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00066 Score=54.41 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=23.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+..++.++.|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44456789999999999999999998754
No 358
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.88 E-value=0.00052 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999877654
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.88 E-value=0.00052 Score=52.37 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.87 E-value=0.00055 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 361
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.86 E-value=0.00058 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
--.++|+|++|+|||||++.+++-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 362
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00051 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999874
No 363
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.86 E-value=0.00056 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 364
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00058 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+++|+|..||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998753
No 365
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.86 E-value=0.0005 Score=59.92 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhc
Q 029723 83 TVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+|++|+|||||+++|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 366
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00052 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 367
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.85 E-value=0.00054 Score=55.52 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999753
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.85 E-value=0.00054 Score=54.08 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998744
No 369
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.85 E-value=0.00052 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999875
No 370
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.85 E-value=0.00036 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.|++..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999864
No 371
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.84 E-value=0.002 Score=55.53 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=32.2
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
-.+|+++.|.|++|+|||||+..|+...... +.|.|...+.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3479999999999999999998887755434 6777776554
No 372
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.83 E-value=0.00076 Score=57.13 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.8
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+++.|.|++|||||||+..++..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 347899999999999999999888764
No 373
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.83 E-value=0.00062 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.480 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 374
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.00069 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+..++.|+||+||||+|+.+.|+..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998654
No 375
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.82 E-value=0.0011 Score=56.68 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhc
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.++|+++.|.|++|||||||+..|+..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999988874
No 376
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.82 E-value=0.00062 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 377
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00063 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998753
No 378
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.81 E-value=0.00066 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999853
No 379
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.81 E-value=0.00059 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 029723 82 FTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~G 103 (189)
-.++|+|++|+|||||++.+++
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999984
No 380
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.81 E-value=0.00083 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCchHHHHH-HHHHhc
Q 029723 80 RAFTVGIGGPVGTGKTALM-LALCKF 104 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL-~~L~Gl 104 (189)
+|.++.|.||.||||||+| +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 554443
No 381
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.81 E-value=0.00063 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 029723 82 FTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~G 103 (189)
-.++|+|++|+|||||++.+++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 382
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.81 E-value=0.00075 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999974
No 383
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.80 E-value=0.00067 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
--.++|+|+.|+|||||++.+++-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 384
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.80 E-value=0.0006 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.084 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 468999999999999999999854
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.80 E-value=0.00066 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 386
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.79 E-value=0.00031 Score=59.02 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+..+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987554
No 387
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.79 E-value=0.0006 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987654
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.00062 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 458999999999999999999754
No 389
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.79 E-value=0.00068 Score=51.88 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 390
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.79 E-value=0.00062 Score=56.65 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh
Q 029723 81 AFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~G 103 (189)
..+|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 391
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.78 E-value=0.00065 Score=56.39 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++||||||||+.|+|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999974
No 392
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.0007 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.-.++|+|++|+|||||++.+++-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 393
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.77 E-value=0.00068 Score=56.08 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|.+|||||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999853
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.76 E-value=0.0006 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 395
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.76 E-value=0.00073 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999753
No 396
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.76 E-value=0.00067 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
...+.|+||+|+|||||++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 466789999999999999999987643
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.75 E-value=0.00075 Score=55.73 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHh
Q 029723 82 FTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~G 103 (189)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 398
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.74 E-value=0.00071 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 399
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.74 E-value=0.0007 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 400
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.74 E-value=0.00076 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|+.|+|||||++.+++-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999753
No 401
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.74 E-value=0.00056 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
..++|+|.+|+|||||++.|++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998764
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.73 E-value=0.00055 Score=60.86 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~ 119 (189)
..+++|+|++|+|||||+..|++.+... .++.+...|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3689999999999999999999988755 57877776654
No 403
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00071 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999988643
No 404
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.72 E-value=0.0007 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.72 E-value=0.00072 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 406
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.00092 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
....+.|.||+|+|||||+++|+..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456789999999999999999998764
No 407
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.72 E-value=0.00085 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
++.|+||+||||+|+.+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.71 E-value=0.0015 Score=52.61 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF 119 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~ 119 (189)
.-++.++|+.|+|||||++.|+..+. . -++.+...|..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 46889999999999999999997777 6 46777766653
No 409
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.71 E-value=0.00088 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.-.++|+|++|+|||||++.+++-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999875
No 410
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.71 E-value=0.00064 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 411
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.70 E-value=0.00085 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
+|.++.|.|+.||||||+++.|...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999999987766
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.70 E-value=0.00053 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.-.++|+|++|+|||||++.+++..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998765
No 413
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.0008 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|+.|+|||||++.+++-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999974
No 414
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.67 E-value=0.00089 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
.-.++|+|+.|+|||||++.+++-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 415
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.67 E-value=0.001 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
--.++|+|++|+|||||++.+++-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998753
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.66 E-value=0.0011 Score=57.28 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998664
No 417
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.0024 Score=47.43 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI 118 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di 118 (189)
.+.-+.|.||+|+|||+|.+.|....... ..+.++...+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~ 62 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence 45568899999999999999999876544 4433555444
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00095 Score=53.67 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.+++|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999997663
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.66 E-value=0.00086 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999853
No 420
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.63 E-value=0.00089 Score=54.97 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|.+|+||||||+.|+|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999864
No 421
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.62 E-value=0.00059 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=9.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.60 E-value=0.001 Score=51.35 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
--.+.|+|++|+|||||++.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998854
No 423
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.59 E-value=0.0013 Score=57.88 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
....++.|+|++|||||||.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999987643
No 424
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0011 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 425
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.56 E-value=0.0013 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..++|+|.+|+|||||++.|++...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998654
No 426
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++-.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 458999999999999999998753
No 427
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.53 E-value=0.0008 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.+.-.++|+|++|+|||||++.+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999965
No 428
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.52 E-value=0.0029 Score=50.43 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEe
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV 114 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~ 114 (189)
|.+|+|-|+-||||||+++.|...+.....+.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 4578999999999999999999877533444443
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.50 E-value=0.00085 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..++.+|+|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999999987663
No 430
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.50 E-value=0.0015 Score=52.72 Aligned_cols=28 Identities=36% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
+|.++.|.|++||||||+++.|...+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6889999999999999999999988765
No 431
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.0011 Score=55.41 Aligned_cols=24 Identities=50% Similarity=0.575 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhccc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+.|.||+|+|||||+++|+..+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998764
No 432
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.49 E-value=0.0012 Score=59.32 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHhccc
Q 029723 84 VGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.|+||||+|||||+++|++...
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 77999999999999999998653
No 433
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.49 E-value=0.001 Score=59.95 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccC-CccEE
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA 112 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p-~G~I~ 112 (189)
+|+.++|+|++|+|||||++.|+..... .+.|.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 6889999999999999999999886653 24443
No 434
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.48 E-value=0.0014 Score=56.76 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 435
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.48 E-value=0.0014 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|..|+|||||++.|++-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 436
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.48 E-value=0.0011 Score=58.65 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
...+.|.||+|+|||||+++|+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999876
No 437
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0015 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|.+|+|||||++.+++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 438
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.47 E-value=0.0019 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.-+.|.||+|+|||||++.|+..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998754
No 439
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0015 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.+++..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.46 E-value=0.0014 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|++-.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 441
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.43 E-value=0.0006 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=4.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999876
No 442
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.43 E-value=0.00057 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.|++-
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 443
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.42 E-value=0.0012 Score=58.45 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|++|+|||||++.|+|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999853
No 444
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.41 E-value=0.0037 Score=52.74 Aligned_cols=40 Identities=25% Similarity=0.186 Sum_probs=29.8
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
-.+|+++.|.|++|+|||||+..++...... ..+.+...+
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3479999999999999999988887543323 456666544
No 445
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0016 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 446
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.0017 Score=49.66 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998764
No 447
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=54.75 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
..-+.|.||+|+|||||++.|+..+...--+.++..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 45688999999999999999998763222344554444
No 448
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.37 E-value=0.0028 Score=53.52 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND 117 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~d 117 (189)
+..+.|.||+|+|||||++.++..+... ..+.+.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4579999999999999999999988754 444555444
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.33 E-value=0.0022 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+..+.|.||+|+|||||++.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999888766
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.32 E-value=0.002 Score=55.37 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.32 E-value=0.0022 Score=55.47 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=29.3
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeec
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN 116 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~ 116 (189)
-++|.++.|.|++|+|||||...++...... +.+.+...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3478999999999999999998887654433 45555443
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.32 E-value=0.0019 Score=54.26 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998764
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.30 E-value=0.0031 Score=57.12 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEeecCCCC
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT 120 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~g~di~~ 120 (189)
+..+++|+|++|||||||+..|+..+... -++.+...|...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 35689999999999999999999766544 357776666643
No 454
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.23 E-value=0.001 Score=53.87 Aligned_cols=22 Identities=45% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcc
Q 029723 84 VGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll 105 (189)
+.|.||+|+|||||+++|+..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999998754
No 455
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.18 E-value=0.0022 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999998764
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.17 E-value=0.0032 Score=54.12 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..++.|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998755
No 457
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0032 Score=49.81 Aligned_cols=39 Identities=28% Similarity=0.177 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH-h-cccCCccEEEeecC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALC-K-FLRDKYSLAAVTND 117 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~-G-ll~p~G~I~i~g~d 117 (189)
++|+++.|.|++|+|||||+.-++ . ..+....+.+...+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 479999999999999999976554 2 33323456665443
No 458
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.16 E-value=0.0055 Score=49.57 Aligned_cols=28 Identities=29% Similarity=0.152 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcccCC
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLRDK 108 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~p~ 108 (189)
+..+.|.|++|+|||+|++.|+......
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 4568899999999999999999887644
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.15 E-value=0.0023 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..+.|.||+|+|||+|.++|+..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5677889999999999999998763
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.13 E-value=0.0031 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.11 E-value=0.0037 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.192 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.-.++|+|.+|+|||||++.|++...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 45799999999999999999998653
No 462
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.07 E-value=0.0029 Score=53.11 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.0
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
.++|+++.|.|++|+|||||+..++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999988875
No 463
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.07 E-value=0.0029 Score=55.49 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|.+++|||||++.|++.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
No 464
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.07 E-value=0.0031 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...+.|.||+|+|||||++.|+..+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35688999999999999999988643
No 465
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.05 E-value=0.0023 Score=62.37 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.0
Q ss_pred cCcccC-CCcEEEEEcCCCchHHHHH
Q 029723 74 SRNFNE-RAFTVGIGGPVGTGKTALM 98 (189)
Q Consensus 74 ~~~f~~-~GeivgLiGpNGSGKTTLL 98 (189)
++++.- ++++++|.|.+|||||||.
T Consensus 38 ni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 38 SVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ceeeeccCCCEEEEECCCCCcHHHHH
Confidence 344443 4899999999999999985
No 466
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.005 Score=52.60 Aligned_cols=41 Identities=10% Similarity=-0.090 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhcccC--------C-ccEEEeecCCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLRD--------K-YSLAAVTNDIF 119 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~p--------~-G~I~i~g~di~ 119 (189)
.++..+.|.||+|+|||++++.++..+.. . -.|.+++..+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 45778899999999999999999987741 2 34667765543
No 467
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.04 E-value=0.0025 Score=56.02 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhcc
Q 029723 83 TVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll 105 (189)
.++|+|++|+|||||++.|++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.02 E-value=0.0042 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
....+.|.||+|+|||||+++|+..+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999988653
No 469
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.02 E-value=0.004 Score=53.03 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
....+.|.||+|+|||||.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688999999999999999998763
No 470
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.01 E-value=0.0037 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
+...|..+.|+|++|+|||||...|..
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 333688899999999999999999987
No 471
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.01 E-value=0.0039 Score=50.61 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723 78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 78 ~~~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~ 114 (189)
..+|.++.|.|+.|+||||++..++..+... -.+.+.
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999776665544433 355555
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.98 E-value=0.0042 Score=52.34 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc-CC-ccEEE
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAA 113 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~-p~-G~I~i 113 (189)
+.-+.|.||+|+|||+|+++|+..+. .. .++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~ 186 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTL 186 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEE
Confidence 57889999999999999999998765 44 34443
No 473
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0034 Score=55.82 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~ 119 (189)
=+.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~-~~~v~~~~l~ 243 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAA-FIRVNGSEFV 243 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCE-EEEEEGGGTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-eEEEecchhh
Confidence 37899999999999999999976532 2444554443
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0033 Score=56.04 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=26.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~ 119 (189)
.=+.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~-~~~v~~s~l~ 252 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGAN-FIFSPASGIV 252 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEehhhhc
Confidence 447799999999999999999976532 2344444443
No 475
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.97 E-value=0.0049 Score=53.12 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCchHHHHH-HHHHhcccC--CccEEEeecCCCCCchHHHhhhcee
Q 029723 79 ERAFTVGIGGPVGTGKTALM-LALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGA 132 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL-~~L~Gll~p--~G~I~i~g~di~~~~~~~~~~~iG~ 132 (189)
++| ++-|.||+|+|||||+ .+++...+. .+.+.+....- ... ..+.+++|+
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~-s~~-~~ra~~lGv 80 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF-GIT-PAYLRSMGV 80 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC-CCC-HHHHHHTTC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc-hhh-HHHHHHhCC
Confidence 357 8999999999999994 444454443 45555443322 122 234555554
No 476
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0044 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
...+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999865
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.94 E-value=0.0038 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...+.|.||+|+||||+..+|+..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998774
No 478
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.93 E-value=0.004 Score=57.10 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhcccCC-ccEEEe
Q 029723 80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV 114 (189)
Q Consensus 80 ~GeivgLiGpNGSGKTTLL~~L~Gll~p~-G~I~i~ 114 (189)
...++.|.|++|+||||+++.|+..+... ..|.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 35789999999999999999999877655 456554
No 479
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.93 E-value=0.0037 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gl 104 (189)
|-.++|+|++|+|||||++.|++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445999999999999999999985
No 480
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.93 E-value=0.0033 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccC
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRD 107 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p 107 (189)
.+.|.||+|+|||||+++|+..+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5889999999999999999987654
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.93 E-value=0.0025 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHH-HHhc
Q 029723 82 FTVGIGGPVGTGKTALMLA-LCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~-L~Gl 104 (189)
-.++|+|++|+|||||++. +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999998 5554
No 482
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.93 E-value=0.0044 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45688999999999999999998654
No 483
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.93 E-value=0.0059 Score=48.17 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhcccCCc-cEEEe
Q 029723 83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAV 114 (189)
Q Consensus 83 ivgLiGpNGSGKTTLL~~L~Gll~p~G-~I~i~ 114 (189)
+|.|=|.-||||||+++.|...++..| .+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578889999999999999998887654 34443
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.89 E-value=0.0042 Score=53.20 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998754
No 485
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.89 E-value=0.0025 Score=54.49 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|.+++||||||+.|+|.-
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999964
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.88 E-value=0.0054 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..-+.|.||+|+|||||+++|+..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34688999999999999999987653
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.86 E-value=0.0043 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.+++-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.004 Score=55.02 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcccCCccEEEeecCCC
Q 029723 84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119 (189)
Q Consensus 84 vgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di~ 119 (189)
+.|.||+|+|||+|.++|++.+... -+.+.+.++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~ 219 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK-FIRVSGAELV 219 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE-EEEEEGGGGS
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC-ceEEEhHHhh
Confidence 6799999999999999999976532 2444554443
No 489
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.83 E-value=0.0048 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
...+.|+||+|+|||||.+.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
No 490
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0037 Score=55.69 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=26.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcccCCccEEEeecCC
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI 118 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~p~G~I~i~g~di 118 (189)
.-+.|.||+|+|||+|.++|++.+... -+.+.+.++
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~~-f~~v~~s~l 251 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNAT-FLKLAAPQL 251 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGG
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCCC-EEEEehhhh
Confidence 447899999999999999999976532 234444444
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.80 E-value=0.0049 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
..+.|.||+|+|||||++.|+..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999987653
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.80 E-value=0.0057 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
|.++.|.||.|+|||||++.++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc
Confidence 5799999999999999999988654
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.79 E-value=0.0049 Score=48.78 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=22.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHh
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCK 103 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~G 103 (189)
+...|.-+.|.|++|+|||||...|..
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344578899999999999999887765
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.79 E-value=0.0046 Score=54.94 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.5
Q ss_pred ccCCCcEEEEEcCCCchHHHHHHHHHhccc
Q 029723 77 FNERAFTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 77 f~~~GeivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
|.....+|.|+|.+||||||+.+.|+..+.
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444557899999999999999999987653
No 495
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.78 E-value=0.0042 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=22.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
-.++|+|..|+|||||++.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 579999999999999999999863
No 496
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.75 E-value=0.0035 Score=55.42 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhcc
Q 029723 81 AFTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 81 GeivgLiGpNGSGKTTLL~~L~Gll 105 (189)
..-+.|.||+|+|||||+++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999876
No 497
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.75 E-value=0.0042 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhccc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKFLR 106 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gll~ 106 (189)
.-+.|.||+|+|||||+++|+..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4578999999999999999998653
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.72 E-value=0.006 Score=52.99 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhccc-CCccEEEeecCC
Q 029723 79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDI 118 (189)
Q Consensus 79 ~~GeivgLiGpNGSGKTTLL~~L~Gll~-p~G~I~i~g~di 118 (189)
++|.++.|.|++|+|||||+..++.... ..+.+.|...+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4789999999999999999877765433 335666665543
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.72 E-value=0.00068 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhc
Q 029723 82 FTVGIGGPVGTGKTALMLALCKF 104 (189)
Q Consensus 82 eivgLiGpNGSGKTTLL~~L~Gl 104 (189)
-.++|+|++|+|||||++.|++-
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998864
No 500
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0063 Score=53.15 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.2
Q ss_pred ccCCC-cEEEEEcCCCchHHHHHHHHHhcc
Q 029723 77 FNERA-FTVGIGGPVGTGKTALMLALCKFL 105 (189)
Q Consensus 77 f~~~G-eivgLiGpNGSGKTTLL~~L~Gll 105 (189)
....| -.|+|||.+-+||||||+.|++.-
T Consensus 67 v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 67 VARTGVASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp BCBCSSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred EeecCCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 34456 469999999999999999999863
Done!