BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029724
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/189 (92%), Positives = 185/189 (97%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
MSTGY+IL+RDYSKIIKLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAM
Sbjct: 35 MSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAM 94
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
GQLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPF
Sbjct: 95 GQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPF 154
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN GI
Sbjct: 155 LDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIR 214
Query: 181 REYMELRKD 189
RE MELRKD
Sbjct: 215 REEMELRKD 223
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 341 bits (874), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/189 (85%), Positives = 175/189 (92%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
MSTGYSILSRDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM
Sbjct: 35 MSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAM 94
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
QLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPF
Sbjct: 95 AQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPF 154
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L DGI
Sbjct: 155 LDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIK 214
Query: 181 REYMELRKD 189
E M+LRKD
Sbjct: 215 TELMDLRKD 223
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 329 bits (844), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 154/189 (81%), Positives = 172/189 (91%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCPAM
Sbjct: 33 LSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAM 92
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP
Sbjct: 93 AQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPV 152
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK FASATERDIYTGDKLEIVV+NK G
Sbjct: 153 LDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTK 212
Query: 181 REYMELRKD 189
REY++LRKD
Sbjct: 213 REYIDLRKD 221
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 3/186 (1%)
Query: 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQL 63
GY I +R Y+KI +L KCV+A+SG QAD ALQK L + ++ +H K MS PA+ Q
Sbjct: 54 GYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQF 113
Query: 64 LSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDN 123
LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDN
Sbjct: 114 LSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDN 173
Query: 124 QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 183
Q+ + ++ V S + V VK SA ERDIYTGD +IVV++K+G+H E
Sbjct: 174 QVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEK 230
Query: 184 MELRKD 189
EL+ D
Sbjct: 231 FELKLD 236
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S GYSI SRD K KL D V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 54 LSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAI 113
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P
Sbjct: 114 AAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPL 173
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQ+ + + + V PLS+ +AV LVK F SA ERD+YTGD L+I ++ K+GI
Sbjct: 174 LDNQIGFKN---MENVEQV-PLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIR 229
Query: 181 REYMELRKD 189
E + LRKD
Sbjct: 230 EEIVPLRKD 238
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 124/189 (65%), Gaps = 4/189 (2%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S GYSI SRD K KL D V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 53 LSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAI 112
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P
Sbjct: 113 AAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPL 172
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQ+ + + + V PLS+ +AV LVK F SA ERD+YTGD L+I ++ K+GI
Sbjct: 173 LDNQIGFKN---MENVEQV-PLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIR 228
Query: 181 REYMELRKD 189
E + LRKD
Sbjct: 229 EEIVPLRKD 237
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+SI +RD K KL DK V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 57 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 116
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R + + GS S ++ P
Sbjct: 117 AAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL 176
Query: 121 LDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179
LDNQ+ + Q+ PLS A+ LVK F SA ERD+YTGD L I ++ K+GI
Sbjct: 177 LDNQVGFKN-----MQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 231
Query: 180 HREYMELRKD 189
E + LRKD
Sbjct: 232 REETVSLRKD 241
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 121/190 (63%), Gaps = 6/190 (3%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+SI +RD K KL DK V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 56 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 115
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R + + GS S ++ P
Sbjct: 116 AAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL 175
Query: 121 LDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179
LDNQ+ + Q+ PL+ A+ LVK F SA ERD+YTGD L I ++ K+GI
Sbjct: 176 LDNQVGFKN-----MQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 230
Query: 180 HREYMELRKD 189
E + LRKD
Sbjct: 231 REETVPLRKD 240
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 122/190 (64%), Gaps = 6/190 (3%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+SI +RD K KL DK V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 57 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 116
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R + + GS S ++ P
Sbjct: 117 AAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL 176
Query: 121 LDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179
LDNQ+ + Q+ PLS A+ LVK F SA ERD+YTGD L++ ++ K+GI
Sbjct: 177 LDNQVGFKN-----MQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGI 231
Query: 180 HREYMELRKD 189
E + LRKD
Sbjct: 232 RGETVPLRKD 241
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 120/190 (63%), Gaps = 6/190 (3%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+SI +RD K KL DK V+ SGF D L K++ AR +Y+H +NK M+ A+
Sbjct: 56 LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 115
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LS LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R + + GS S ++ P
Sbjct: 116 AAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL 175
Query: 121 LDNQLKSPSPLLLPAQDAV-TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179
LDNQ+ + Q+ PL+ A+ LVK F SA ERD+YTGD L I ++ K+GI
Sbjct: 176 LDNQVGFKN-----MQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 230
Query: 180 HREYMELRKD 189
E + LRKD
Sbjct: 231 REETVPLRKD 240
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 2/189 (1%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S+GY+I SR SK+ KL+ + V+ S+G AD +L + R Y+H H + M+ A+
Sbjct: 49 LSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAV 108
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
Q+LS +Y +RFFPYY N+L G+DNEGKG VY+YD +G E+ Y + G+ TL+ P
Sbjct: 109 AQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPV 168
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LDNQ+ + + L D + L++ AV + F SA ERDIYTGD + I ++ KDGI
Sbjct: 169 LDNQIGHKN-MNLEDADKI-KLTKERAVSVASDTFISAAERDIYTGDSVLINIITKDGIE 226
Query: 181 REYMELRKD 189
+ LR+D
Sbjct: 227 VRTLTLRQD 235
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 5/192 (2%)
Query: 3 TGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMG 61
T YSI SR K+ D VM+++GF AD AL K Y HN K++S +
Sbjct: 50 TDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAA 109
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
+ + + LY KRFFPYY ++ GLD +GKG VY++D VGSYER + G+ ++LIMPFL
Sbjct: 110 RNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFL 169
Query: 122 DNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 177
DNQ+ + V LS E + LV+ F SATER I GD LEI+++ KD
Sbjct: 170 DNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 229
Query: 178 GIHREYMELRKD 189
G+ +E+ EL++D
Sbjct: 230 GVRKEFYELKRD 241
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 13/184 (7%)
Query: 11 DYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQM-SCPAMGQLLSNTLY 69
D SK+ KL D+ +ASSG QAD LQ++L R YQ+ + ++ S A+ +L S LY
Sbjct: 83 DTSKLFKLTDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLY 142
Query: 70 YKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPS 129
+RFFPYY+FN++ G+D +G G Y+YD VGS E Y + GS S+ + P LD
Sbjct: 143 QRRFFPYYTFNMIVGIDEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLD------- 195
Query: 130 PLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 185
LL Q VT L+ EA+ ++K F A ERDI+TGD + ++ DG+ E E
Sbjct: 196 -CLLTRQHMVTQAPADLTMEEALGMLKNAFTGAAERDIFTGDTVCFHIITADGVGTEMFE 254
Query: 186 LRKD 189
LRKD
Sbjct: 255 LRKD 258
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 4/185 (2%)
Query: 6 SILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLS 65
+IL+RD KI L D ++ +SGF DV L+K+L +R Y+ + MS +LLS
Sbjct: 77 NILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS 136
Query: 66 NTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 125
LYY+RFFPYY+ +L G+D GKG V++YD +G ER+GYS+ G+ +I+PFLD Q+
Sbjct: 137 RNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI 196
Query: 126 KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG-IHREYM 184
+ L L+ A+ L+K F A ER+I TGDK+ +V+ + +++
Sbjct: 197 ---GHVTLSEGYERPELTLDRAISLMKDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFL 253
Query: 185 ELRKD 189
LR+D
Sbjct: 254 PLRED 258
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 20/199 (10%)
Query: 3 TGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQ 62
GY+I +R ++ ++ D V+ +SGF+AD AL K + R +Y H ++MS +
Sbjct: 35 NGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCAC 94
Query: 63 LLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLD 122
++ LY KRFFPYY + + G+D EGKG +Y++D VGSYER + GS + I PFLD
Sbjct: 95 MVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLD 154
Query: 123 NQL------------KSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLE 170
NQ+ K P L L EA+ + F SA ER I GD +
Sbjct: 155 NQVNLHNQYVPGSHGKERKPRRL--------LKLEEAMKITTDAFTSAGERHIEVGDSVL 206
Query: 171 IVVLNKDGIHREYMELRKD 189
+ ++ K+G+ + L+KD
Sbjct: 207 VKIITKEGVETRIIPLKKD 225
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 8/188 (4%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S+ I SR+ SKI ++ D ++ +GF AD + + + I Q++ + ++ +
Sbjct: 111 SSSMVINSREMSKIFQVGD-FLLTGTGFYADTHEVYVKMV--YEIRQYEVDDSINIHSAA 167
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LLS LY KRFFPYYSF VL G + +GK VY+YD +GS+ V GSG ++I P L
Sbjct: 168 NLLSKILYSKRFFPYYSFCVLSGFE-KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLL 226
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
D+ + + A++ T LS+ + + LV F SA ERD+ T D LE+ V+ ++ + R
Sbjct: 227 DSFIDKKN--WNNAEE--TQLSQEDCIRLVVKAFNSAAERDVKTKDNLEVCVMRENQVMR 282
Query: 182 EYMELRKD 189
E LR+D
Sbjct: 283 ETFPLRRD 290
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ GY + + KIIK+ D M ++G AD + L + LA Y+ + ++MS A
Sbjct: 36 TAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEWLANHTHYYEIVNKRRMSIHAAA 95
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
Q LS L+ +F+PY +LGG D + + +Y D GS Y + GSGS + +
Sbjct: 96 QYLSIILHSAKFYPYIVQLLLGGYDTQPR--LYNIDWFGSVTEEKYVATGSGSPTAIGVI 153
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
++Q SP+ LS EAV+L K AS+ RD +TG+ +++VV+ KD +R
Sbjct: 154 EDQY-SPN------------LSMEEAVELAKRAVASSIRRDTFTGNGVDVVVIGKD-FYR 199
Query: 182 EYMELRKD 189
EY KD
Sbjct: 200 EYSFELKD 207
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 16/188 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G + + + KI+ + D+ + ++G DV+AL ++L A+ YQ + M+ AM
Sbjct: 28 SLGNMVETLNIRKILPITDRIAITTAGSVGDVQALARMLEAQARYYQFTWGRPMTTRAMA 87
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LLSN L ++FPY ++GG + K + + DA+G Y++ GSGS + +
Sbjct: 88 NLLSNILNENKWFPYMVQIIIGGYVD--KPELASVDALGGLVFEKYTATGSGSPFAIAII 145
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKDGIH 180
++ + +S EA +L +A +RD+YTG+ K+++VV+ KDG+
Sbjct: 146 EDGYRE-------------DMSIEEAKELAVRAVKTAGKRDVYTGERKVQVVVITKDGMK 192
Query: 181 REYMELRK 188
E++E ++
Sbjct: 193 EEFVEFKE 200
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G+ + + + KII + D+ + ++G DV+AL ++L A YQ K MS AM
Sbjct: 28 SLGHMVETLNIRKIIPITDRIAITTAGSVGDVQALARMLEAEARYYQFTWGKPMSTKAMA 87
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LLSN L ++FPY +LGG E + D +G Y++ GSGS + L
Sbjct: 88 NLLSNILNGNKWFPYLVQIILGGYVEE--PTLANLDPLGGLIFDDYTATGSGSPFAIAVL 145
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKDGIH 180
++ K +S EA +L +A +RD+YTG K++IV + K+GI
Sbjct: 146 EDGYKK-------------DMSIEEAKELAVRAVRTAGKRDVYTGSRKIQIVAITKEGIT 192
Query: 181 REYMEL 186
E++E
Sbjct: 193 EEFVEF 198
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G ++S+ K+ ++ DK MAS+G AD++ L +++ A +Y+ N +
Sbjct: 25 VSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVEAEMRLYELDSNISPKVWTV 84
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS LY +R FPYY+ V+GGLD EG +Y+ D +G+ Y + GSG+ L +
Sbjct: 85 AKLLSYILYERRLFPYYAEIVVGGLDEEGS-HLYSLDPIGAIIEDDYVALGSGTQLAISI 143
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 178
+++ K +S EA+ L +A +RD +GD ++++V+ K G
Sbjct: 144 VESNYKK-------------DMSLDEALSLALKSVYAAMKRDAASGDGVDVLVIGKSG 188
>sp|Q5JHL8|PSB2_PYRKO Proteasome subunit beta 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB2 PE=3 SV=1
Length = 199
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 14 KIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRF 73
KI+ + D+ + ++G DV+AL ++L A YQ + M+ AM LLSN L ++
Sbjct: 39 KILPITDRIAITTAGSVGDVQALARMLEAEARYYQFTWGRPMTAKAMAHLLSNILNENKW 98
Query: 74 FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL 133
FPY ++GG E + D +G Y++ GSGS + L++ +
Sbjct: 99 FPYMVQIIIGGYVEE--PTLANLDPLGGLIFDDYTATGSGSPFAIAVLEDGFRK------ 150
Query: 134 PAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKDGIHREYMELRK 188
+S EA +L +A +RD+YTGD K+++VV++KDG+ E++E ++
Sbjct: 151 -------DMSLEEAKELAVRAVRTAGKRDVYTGDRKVQVVVISKDGMKEEFVEFKE 199
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 16/181 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G + S++ +K+ ++ D +A +G D+ +L +LL A +Y+ + ++MS A+
Sbjct: 31 TLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDILSLVRLLRAEAKLYRAKVGREMSVKALA 90
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
L+SN L+ R PY+++ ++GG D + + +Y+ DA G + + GSG + L
Sbjct: 91 TLVSNVLHGSRHLPYFAWFLIGGYDVKPR--LYSIDAAGGVTEERFIAAGSGMEFALALL 148
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
+ L E +DL +A RD+YTG+ + +V + K+G +R
Sbjct: 149 EENFSDGMGL-------------DEGIDLAVRAVKAAIRRDVYTGEGVTVVAITKEG-YR 194
Query: 182 E 182
E
Sbjct: 195 E 195
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+ LS K+ + D+ +AS+G AD++ L K+L Y+ + ++ S AM
Sbjct: 28 VSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKILKLNAKAYELEMKRKPSVHAM 87
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS ++ +RF P+++ ++GG+D+EG + D +GS Y++ G+G+ L +
Sbjct: 88 AKLLSVVMFSRRFMPFFAEVLVGGIDDEGPHLI-VMDPLGSLIEDNYAALGTGAKLAIAI 146
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
+D K L QDA L +A ERD +G +++VV++K+G
Sbjct: 147 IDASYKPDMSL----QDAKK---------LAVQALKAALERDPVSGGGIDLVVIDKNGAR 193
Query: 181 REYMELR 187
E ++L+
Sbjct: 194 EEEVKLQ 200
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G +LS++ +K+ ++ D +A +G D+ +L +LL A +Y+ + +++S A+
Sbjct: 28 SLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRLLRAEVKLYRAKVGREISVKALA 87
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
L SN L+ RF PY+ + ++ G D K +Y+ D G +++ GSG L L
Sbjct: 88 TLTSNILHGSRFMPYFGWFLIAGYDE--KPALYSLDMAGGVTEDKFTAAGSGMELAFAVL 145
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG--- 178
++ K ++ E V L AT RD++TGD + +V + ++G
Sbjct: 146 EDGYKD-------------DINVEEGVKLALKAIKIATRRDVFTGDGITLVTVTEEGYRE 192
Query: 179 IHREYME 185
++RE +E
Sbjct: 193 LNREEIE 199
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G I +R+ +KI K+ + +A +G D+ L +LL A +Y Q K+MS A+
Sbjct: 31 SLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALA 90
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LL+N + ++FPY ++ ++GG D + K +Y+ D VG Y++ GSG L
Sbjct: 91 TLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYATAGSGMEFAYSIL 148
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 178
D++ K L+ E + L +A +RD+++GD + +V + K+G
Sbjct: 149 DSEYKD-------------NLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEG 192
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 15/177 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ GY I S+ K+ ++AD+ M +G D + L +++ +YQ + +++++ A
Sbjct: 32 TMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARIITVECNLYQIRRSREITVGAAS 91
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
LLSN L R+FPYY ++GG+D+ G VY+ DA+ G+ + S GSGS +
Sbjct: 92 TLLSNYLNQNRYFPYYVQLLVGGIDDHGP-SVYSVDAMGGATKEEDIVSTGSGSPMAYGV 150
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 177
L+++ + P ++E EAV+L SA +RD +G+ + +VV+ KD
Sbjct: 151 LEDRYR-------PG------MNEDEAVELAVRALRSAMKRDAGSGEGIHVVVITKD 194
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G +LS +K+ ++ D +A +G D+ +L +LL A +Y+ + +++MS A+
Sbjct: 28 SLGNMVLSERVTKVFQIDDHLAIAGAGTVGDILSLVRLLRAEAKLYRAKVSREMSVKALA 87
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
L SN L+ R F Y ++ ++GG D+ + +Y+ DA G +++ GSG L
Sbjct: 88 TLTSNILHSGRGFAYMAWFLVGGYDSAPR--LYSIDAAGGVTEDRFTAAGSGMEFAFSVL 145
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
+ + PL E V L +AT+RD++TG + +V + ++G +R
Sbjct: 146 EENYRDGIPL-------------EEGVKLALRAIKAATKRDVFTGGGVTLVTITEEG-YR 191
Query: 182 EYME 185
E+ E
Sbjct: 192 EWSE 195
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G ++S+ +KI ++ D +A +G D+ +L + L A +Y+ + K+MS A+
Sbjct: 30 SLGNMVISKGVTKIFQVDDHLALAGAGAVGDILSLVRALRAESKLYRAKVGKEMSTKALA 89
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
L SN L +++ PY+ + ++GG D K +Y+ D G Y S GSG L
Sbjct: 90 TLTSNILSGRKYLPYFGWFLIGGYDE--KPSLYSIDMAGGITEDKYVSAGSGMEFAYSIL 147
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
DN+ L V L +A +RD++TGD + +V ++++G
Sbjct: 148 DNEYSEKITL-------------NNGVKLAIKAINAAIKRDVFTGDGIMVVTIDREG--- 191
Query: 182 EYMELRKD 189
Y EL K+
Sbjct: 192 -YRELSKE 198
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 14/187 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+ LS K+ + DK +AS+G AD++AL K+L Y+ + K+ + AM
Sbjct: 28 VSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKILKLNARSYELEVKKKPTVKAM 87
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS ++ +RF P+Y+ ++GG+D EG + D +GS Y++ G+G+ L +
Sbjct: 88 AKLLSVVMFSRRFMPFYAEVLVGGVDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVSL 146
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LD + ++ EA L +A ERD +G +++VV++ G
Sbjct: 147 LDASYRP-------------DMTVEEAKKLAVQAVKAAIERDPVSGGGIDLVVVDGGGAR 193
Query: 181 REYMELR 187
E ++++
Sbjct: 194 EEEVKVQ 200
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G I +++ +KI K+ + +A +G D+ L +LL A +Y+ K+MS A+
Sbjct: 31 SLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALA 90
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LL+N L ++FPY + ++GG D + + +++ D VG Y++ GSG L
Sbjct: 91 TLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGSGMEFAYSIL 148
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
D++ + +S + + L A +RD++TGD L +V + KDG ++
Sbjct: 149 DSEYRE-------------EMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDG-YK 194
Query: 182 EY 183
EY
Sbjct: 195 EY 196
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 11 DYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY 70
+ KI+ + D+ + ++G D++AL ++L A YQ K M+ AM LLSN L
Sbjct: 36 NIKKILPITDRIAITTAGSVGDLQALARMLEAEAKYYQFTWGKPMTAKAMANLLSNILNE 95
Query: 71 KRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 130
++FPY ++GG E + + D +G Y++ GSGS + L++ K
Sbjct: 96 SKWFPYMVQIIIGGYVEE--PTLASLDPLGGLIFDNYTTTGSGSPFAIAILEDGYKE--- 150
Query: 131 LLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKDGIHREYMELRK 188
+S +A +L +A +RD+YTG+ K++++ + K+G+ E++E ++
Sbjct: 151 ----------DMSIEDARELAIKAVRTAGKRDVYTGERKIQVITITKEGMKEEFVEFKE 199
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G+ I SR KI+ L++ M SG AD + L +L +Y+ + + S +
Sbjct: 46 TAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVLREEIRLYEMTNKVKPSVRFVA 105
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LLSN L+ +FFPY ++GG D + + +YT D GS Y++ GSGS + L
Sbjct: 106 SLLSNILFSSKFFPYIVQLIVGGYDTQPR--LYTLDLFGSITEDKYTATGSGSPIAYGVL 163
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
+ + + LS EA+ + T SA RD +GD ++VV+ G
Sbjct: 164 EERYRE-------------DLSVEEAIKVATTAIRSAVLRDAASGDGADVVVIGPQGYEE 210
Query: 182 EYM 184
+++
Sbjct: 211 KFI 213
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+ LS K+ + DK +AS+G AD++ L K+L Y+ + ++ S +M
Sbjct: 28 VSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKILKLNAKAYELEMKRKPSTHSM 87
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS ++ +RF P+++ ++GG+D EG + D +GS Y++ G+G+ L +
Sbjct: 88 ARLLSVIMFSRRFMPFFAEVLVGGIDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVAV 146
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LD + ++ EA L +A ERD +G +++ +++K+G
Sbjct: 147 LDTGYRP-------------DITVEEAKKLAVQALKAAIERDPVSGGGIDLAIVDKNGAR 193
Query: 181 REYMELR 187
E + ++
Sbjct: 194 EEEVRVQ 200
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G I S+ K+ ++ D M ++G D + L +L+ +Y+ + N+ M+ +
Sbjct: 30 TMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQLVRLVNVESQLYKMRRNESMTIKGIA 89
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
L+SN L R++P ++GG+D G G +Y+ DA+ GS E S+ GSGS +
Sbjct: 90 TLMSNFLNSNRYYPMMVQLLIGGVDKNGPG-IYSLDALGGSIEETRISATGSGSPMAYGV 148
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L++Q + ++ E +DL +AT+RD +G+ +++VV+ K+
Sbjct: 149 LEDQYRE-------------DMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFR 195
Query: 181 R 181
R
Sbjct: 196 R 196
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G I SR KI ++AD+ M ++G D + L +L++ +Y+ + ++ + A+
Sbjct: 33 TMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLARLISVEIKLYEIRKEEKPTVKAIA 92
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
LLSN L R+FPY+ ++GG+D G +Y+ D + G+ E + + GSGS
Sbjct: 93 TLLSNILNSVRWFPYFVQLLVGGVDKRGP-SIYSIDLLGGAIEEIDIVATGSGSPTAYGV 151
Query: 121 LDNQLKSPSPLLLPAQDAVTP-LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179
L +D TP ++ + V+L SA RD +GD +++V + KDG
Sbjct: 152 L--------------EDRYTPEITVDDGVELAVRAIYSAMRRDSASGDGIDVVKITKDG- 196
Query: 180 HREYMELRKD 189
Y EL K+
Sbjct: 197 ---YFELSKE 203
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G+ LS K+ + DK +AS+G AD++ L ++L + Y+ + K+ + AM
Sbjct: 28 VSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARILKLNVMSYELEVRKKPTVRAM 87
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS ++ +R P+Y+ ++GG+D EG + D +GS Y++ G+G+ L +
Sbjct: 88 AKLLSIIMFSRRLLPFYAEVLVGGVDEEGPHLI-VMDPLGSLIEDNYAALGTGAKLAVSL 146
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
LD + +S EA L +A ERD +G +++ V++ +G
Sbjct: 147 LDATYRP-------------DISLQEAKKLAVQAIKAAIERDPVSGGGIDLAVVDNNGAR 193
Query: 181 REYMELR 187
E ++++
Sbjct: 194 EEEVKIQ 200
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 97/186 (52%), Gaps = 15/186 (8%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G +LS+ K+ KL + +A +G D++ L +++ Y+ +++++S A
Sbjct: 25 LSYGDFVLSKSARKVFKLG-RFGIAGAGIVGDIQTLTRIMNVEIKYYEMYNSRKISARAA 83
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LLS LY + PY S + GG+D +G ++ D +GS Y++ GSG+ + +
Sbjct: 84 AKLLSVILYQNKVLPYISELLFGGVDEDGP-KLFILDPIGSLIEDSYAAVGSGARVAIGV 142
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L+ + L+ A +L SA ERD+ +GD ++I+++NK+ I+
Sbjct: 143 LEAEYNE-------------SLTSEAAKELAIKSMKSAVERDVMSGDGIDILIINKNNIY 189
Query: 181 REYMEL 186
+++++
Sbjct: 190 EDFIKI 195
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 7 ILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSN 66
+LSR+ KI + + + +G DV L K+L Y+ QH +++ ++ +LLS
Sbjct: 33 VLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLRLEAKNYELQHGREIKTRSLAKLLSV 92
Query: 67 TLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 126
LY + P + V+GG D EG +Y D VGS Y + GSG+ L + +++
Sbjct: 93 ILYSYKLAPMLTEVVVGGYDEEGP-SLYILDPVGSVIEEKYVAVGSGAQLALGYIE---- 147
Query: 127 SPSPLLLPAQDAVTPLSEAE--AVDLVKTCFASATERDIYTGDKLEIVVLNKDG 178
P + L EAE AV+ VKT ERD+ +GD +++VV++K+G
Sbjct: 148 -------PRYNPGLGLKEAEELAVNAVKTVI----ERDVLSGDGIDLVVIDKNG 190
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
MS G I+S+ K+ K+ D+ MA +G AD++A+ + L Y+ + ++M +
Sbjct: 25 MSYGGFIMSKAARKVFKVGDRMGMACAGLYADMQAIARALENEIRYYEISNKRKMKVRSA 84
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LL LY + FP + V GG D+E + ++ D VGS YS+ G+G+ L M
Sbjct: 85 ARLLGLILYSNKLFPLMTETVFGGYDDEPR--IFVLDPVGSVIEEKYSAVGTGAPLAMAL 142
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVL 174
LD + + +S EA +L A+ RD +GD ++++V+
Sbjct: 143 LDKEYRE-------------DMSLEEAQNLAIESVKVASGRDSLSGDGIDVLVI 183
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G+ I S+ K+ ++ D M ++G D + L +L++ +Y+ + ++ M+ +
Sbjct: 30 TMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGIT 89
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
L+SN L R++P ++GG+D G G +Y+ DA+ GS E S+ GSGS +
Sbjct: 90 TLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGV 148
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L++Q + ++ E +DL +AT+RD +G+ +++VV+ K+
Sbjct: 149 LEDQYRE-------------NMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFK 195
Query: 181 R 181
R
Sbjct: 196 R 196
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G+ I S+ K+ ++ D M ++G D + L +L++ +Y+ + N+ M+ +
Sbjct: 30 TMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIA 89
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
L+SN L R++P ++GG+D G +Y+ DA+ GS E S+ GSGS +
Sbjct: 90 TLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDAMGGSIEETRISATGSGSPMAYGV 148
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L++Q K ++ E +DL +A +RD +G+ +++VV+ K+
Sbjct: 149 LEDQYKE-------------DIAVKEGLDLAIRAIHNAMKRDSASGENIDVVVITKEAFK 195
Query: 181 R---EYMELRKD 189
R E ++ R+D
Sbjct: 196 RLDPEEVKSRRD 207
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAM 60
+S G I+S+ K+ K+ D +A +G AD++A+ K+L A Y +++S A+
Sbjct: 28 VSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISKILRAEIEYYNIVTGRRISVRAV 87
Query: 61 GQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPF 120
+LL+ LY +++P+ S ++GGL+ +G +Y D +GS Y++ GSG+ + +
Sbjct: 88 ARLLATILYSYKYYPFLSETLVGGLEADGTAKLYVMDPLGSLIEDDYAAIGSGAPIAIGI 147
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 177
L+N +S +A L +A ERD +GD ++++V+ ++
Sbjct: 148 LENGYSK-------------DMSVDDAKKLAIAAVRAAIERDAMSGDGIDLLVIRRE 191
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQL 63
G I S+ K+ ++AD+ M ++G D + L ++++ +YQ + + +S A L
Sbjct: 32 GSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARIMSVECNLYQIRRGRSISVGASSTL 91
Query: 64 LSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLD 122
LSN L R +PYY ++GG+D G VY+ DA+G R + GSGS + L+
Sbjct: 92 LSNYLNQNRGYPYYVQLLVGGVDATGP-SVYSVDAMGGATRESDIVATGSGSPMAYGVLE 150
Query: 123 NQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 182
++ K L+E EA++L +A RD +G+ + +V++ KD
Sbjct: 151 DRYKK-------------DLTEDEAIELAIRALRAAMRRDSASGEGIHVVIITKDA---- 193
Query: 183 YMELRKD 189
Y EL ++
Sbjct: 194 YSELSEE 200
>sp|A0RU86|PSB1_CENSY Proteasome subunit beta 1 OS=Cenarchaeum symbiosum (strain A)
GN=psmB1 PE=3 SV=1
Length = 193
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQL 63
G ++S++ K ++ A +G AD++ L ++A I + + + ++ ++
Sbjct: 26 GNFLVSKNTRKTFQITPYVGAACAGLVADMQILSLQISALAKIRKMDLKRDIPPNSVAKM 85
Query: 64 LSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDN 123
+SN +Y +RFFP + ++GG+ G+ +YT D++GS Y++ G+G+ + + LD
Sbjct: 86 MSNMMYERRFFPLLTQVIVGGV--VGEPAIYTLDSLGSVLPDEYAAVGTGAEMALGVLDP 143
Query: 124 QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDG 178
Q KS +SE +AVDL SA RD ++GD L+I+ L+ +G
Sbjct: 144 QFKS-------------GMSEKDAVDLAVRGIRSAALRDSFSGDGLDILALDANG 185
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 15/180 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ GY I ++ KI ++A + + ++G D + L +L+ +Y+ + K++S A
Sbjct: 31 TMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLARLMTVEANLYEIRRGKRISVQAAS 90
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPF 120
LLSN L+ R FP+Y ++GG+D G +++ DAVG + G + GSGS +
Sbjct: 91 TLLSNILHGNRMFPFYVQLLIGGVDETGP-VLFSVDAVGGTGKEDGIVATGSGSPMAYGV 149
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L+++ + E A++L SA +RD +G+ + +VV+ +D H
Sbjct: 150 LEDRY-------------TLGMDERSAIELAIRALRSAIKRDAGSGEGVAVVVITEDSYH 196
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G I+ + KI+K++D M ++G AD + L +L Y+ H K+MS A
Sbjct: 34 TAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADVLRMEVKNYELFHKKRMSVKAAA 93
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LSN L+ RF+PY ++GG D + +Y+ D G+ + GSGS + + +
Sbjct: 94 TFLSNVLHSARFYPYIVQLLVGGFDTAPR--LYSLDWFGTVAEEEFLVTGSGSPMAVGVI 151
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
+ + P D E V+L +AT RD +G+ +++ V++++GI
Sbjct: 152 EAEYN-------PNMDL------EELVNLAVRAVFAATRRDTASGEGIDVAVIDRNGITM 198
Query: 182 EYMEL 186
+ L
Sbjct: 199 RHYRL 203
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
S G + +++ +KI K+ + +A +G D+ L +LL A +Y Q K+MS A+
Sbjct: 31 SLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALA 90
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFL 121
LL+N L R PY ++ ++GG D + + +Y+ D +G Y + GSG L
Sbjct: 91 TLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITEDKYVAAGSGMEFAYSVL 148
Query: 122 DNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181
D++ + L E + + SA +RD+++GD + +V + ++G +R
Sbjct: 149 DSEYRE-------------DLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEG-YR 194
Query: 182 E 182
E
Sbjct: 195 E 195
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMG 61
+ G+ I S+ K+ ++ D M ++G D + L +L++ +Y+ + N+ M+ +
Sbjct: 30 TMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRNESMTIKGIA 89
Query: 62 QLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPF 120
L+SN L R++P ++GG+D G +Y+ D + GS E S+ GSGS +
Sbjct: 90 TLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDPMGGSIEETRISATGSGSPMAYGV 148
Query: 121 LDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180
L++Q + ++ E +DL +AT+RD +G+ +++VV+ K+
Sbjct: 149 LEDQYRE-------------DIAVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFK 195
Query: 181 R 181
R
Sbjct: 196 R 196
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 95/184 (51%), Gaps = 15/184 (8%)
Query: 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQL 63
G ++S+ K + K +G AD++ L +AA I + + + + + ++
Sbjct: 30 GNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQIAALAKIRKMELKRDVPPNTVAKM 89
Query: 64 LSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDN 123
+SN +Y +R+FP + ++GG+ + K +YT D +GS Y++ G+G+ + + LD
Sbjct: 90 MSNMMYERRYFPLLTQVIVGGVVD--KPIMYTLDPLGSVLPDEYAAVGTGAEMALGVLDP 147
Query: 124 QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 183
Q K P+ +++ EA+DL K +A+ RD +GD ++++V+ KDG
Sbjct: 148 QFK-PN------------MTKDEAIDLAKRAVRAASLRDSASGDGVDVLVITKDGTEEFT 194
Query: 184 MELR 187
E++
Sbjct: 195 EEIK 198
>sp|Q9V247|PSB1_PYRAB Proteasome subunit beta 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 11 DYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY 70
+ KII + D+ + ++G DV+ + ++L A YQ + M+ AM LLSN L
Sbjct: 36 NIRKIIPITDRIAITTAGSVGDVQMIARILEAEARYYQFTWGRPMTTRAMANLLSNILNE 95
Query: 71 KRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSP 130
++FPY ++GG +E + D +G Y++ GSG+ + L+ +
Sbjct: 96 NKWFPYLVQIIIGGYVDE--PTIANLDPLGGLIFDDYTATGSGTPFAIAILEEGYRK--- 150
Query: 131 LLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD-KLEIVVLNKDGIHREYMEL 186
L +A +L +A RD+YTG K+++V + KDG+ E++ L
Sbjct: 151 ----------NLGIEKAKELAIKAVKAAGARDVYTGSKKIQVVTITKDGMKEEFVTL 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,694,681
Number of Sequences: 539616
Number of extensions: 2663419
Number of successful extensions: 6886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 6543
Number of HSP's gapped (non-prelim): 224
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)