Query 029724
Match_columns 189
No_of_seqs 118 out of 1144
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 2.8E-45 6.1E-50 291.7 22.5 184 2-189 29-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 7.8E-44 1.7E-48 280.0 22.5 170 2-184 24-194 (195)
3 cd03758 proteasome_beta_type_2 100.0 1.6E-42 3.4E-47 272.2 21.9 169 2-183 22-192 (193)
4 cd03761 proteasome_beta_type_5 100.0 1.7E-42 3.8E-47 270.9 22.0 166 2-181 21-186 (188)
5 KOG0179 20S proteasome, regula 100.0 3.2E-42 6.9E-47 264.1 18.7 187 1-189 49-235 (235)
6 cd03760 proteasome_beta_type_4 100.0 1E-41 2.2E-46 268.4 22.0 170 2-182 23-195 (197)
7 cd03764 proteasome_beta_archea 100.0 5E-41 1.1E-45 262.5 22.0 166 2-181 21-186 (188)
8 TIGR03634 arc_protsome_B prote 100.0 5.3E-41 1.2E-45 261.6 21.5 164 2-179 22-185 (185)
9 COG0638 PRE1 20S proteasome, a 100.0 5.2E-41 1.1E-45 270.9 21.6 166 2-181 51-219 (236)
10 cd03762 proteasome_beta_type_6 100.0 1.3E-40 2.7E-45 260.2 22.3 167 2-182 21-187 (188)
11 cd01912 proteasome_beta protea 100.0 6.8E-40 1.5E-44 255.9 22.3 168 2-182 21-188 (189)
12 cd03763 proteasome_beta_type_7 100.0 1.2E-39 2.6E-44 255.0 22.1 166 2-182 21-186 (189)
13 PTZ00488 Proteasome subunit be 100.0 1.4E-39 3E-44 264.1 21.5 166 2-181 60-225 (247)
14 TIGR03690 20S_bact_beta protea 100.0 2.2E-38 4.8E-43 253.2 21.4 167 2-181 23-201 (219)
15 cd03765 proteasome_beta_bacter 100.0 5.4E-38 1.2E-42 252.6 22.0 159 9-181 27-204 (236)
16 KOG0180 20S proteasome, regula 100.0 9.6E-39 2.1E-43 238.4 15.5 170 7-189 34-204 (204)
17 cd03750 proteasome_alpha_type_ 100.0 1.1E-37 2.5E-42 250.3 20.9 163 4-181 49-216 (227)
18 cd03752 proteasome_alpha_type_ 100.0 2.5E-37 5.5E-42 246.1 20.1 160 2-174 50-213 (213)
19 cd03755 proteasome_alpha_type_ 100.0 2.9E-37 6.2E-42 244.8 19.6 155 4-174 49-207 (207)
20 PTZ00246 proteasome subunit al 100.0 5.6E-37 1.2E-41 250.0 21.0 164 2-178 52-219 (253)
21 TIGR03633 arc_protsome_A prote 100.0 9.1E-37 2E-41 244.6 21.3 167 4-185 51-221 (224)
22 cd01906 proteasome_protease_Hs 100.0 2.1E-36 4.5E-41 234.5 20.6 160 2-174 21-182 (182)
23 cd03754 proteasome_alpha_type_ 100.0 1.5E-36 3.3E-41 242.0 19.4 158 5-174 52-215 (215)
24 PF00227 Proteasome: Proteasom 100.0 6.2E-36 1.3E-40 233.3 20.7 160 2-174 25-190 (190)
25 PRK03996 proteasome subunit al 100.0 5.3E-36 1.2E-40 242.6 21.0 166 4-184 58-227 (241)
26 cd01911 proteasome_alpha prote 100.0 3.5E-36 7.5E-41 238.9 19.4 157 4-174 49-209 (209)
27 cd03756 proteasome_alpha_arche 100.0 5.1E-36 1.1E-40 238.3 20.3 157 4-175 50-210 (211)
28 cd03749 proteasome_alpha_type_ 100.0 6.7E-36 1.5E-40 237.6 19.9 156 8-175 51-211 (211)
29 cd03751 proteasome_alpha_type_ 100.0 8.9E-36 1.9E-40 237.1 19.4 156 5-174 53-212 (212)
30 cd03753 proteasome_alpha_type_ 100.0 9E-35 1.9E-39 231.4 19.8 155 5-174 50-213 (213)
31 KOG0176 20S proteasome, regula 100.0 4.3E-35 9.4E-40 223.2 14.7 161 6-181 58-228 (241)
32 TIGR03691 20S_bact_alpha prote 100.0 5E-34 1.1E-38 229.0 20.2 156 10-178 48-211 (228)
33 KOG0174 20S proteasome, regula 100.0 9.9E-34 2.1E-38 215.1 14.5 171 2-186 40-210 (224)
34 KOG0175 20S proteasome, regula 100.0 2.1E-33 4.5E-38 221.4 14.0 166 2-181 92-257 (285)
35 KOG0177 20S proteasome, regula 100.0 9.3E-33 2E-37 209.0 15.3 169 2-183 22-192 (200)
36 KOG0183 20S proteasome, regula 100.0 2E-32 4.3E-37 210.9 12.1 157 8-178 56-216 (249)
37 KOG0185 20S proteasome, regula 100.0 4.5E-32 9.8E-37 211.4 13.5 171 2-182 62-235 (256)
38 KOG0178 20S proteasome, regula 100.0 4.7E-31 1E-35 202.9 15.7 160 10-181 60-223 (249)
39 KOG0182 20S proteasome, regula 100.0 7.3E-31 1.6E-35 202.0 16.6 168 6-185 60-231 (246)
40 KOG0181 20S proteasome, regula 100.0 1.8E-31 3.8E-36 203.0 12.2 160 9-183 59-222 (233)
41 KOG0863 20S proteasome, regula 100.0 1.2E-29 2.7E-34 197.3 14.8 159 9-179 57-220 (264)
42 KOG0173 20S proteasome, regula 100.0 3.8E-29 8.2E-34 196.8 14.7 165 2-181 58-222 (271)
43 cd01913 protease_HslV Protease 100.0 8E-28 1.7E-32 184.2 16.7 146 2-173 21-170 (171)
44 PRK05456 ATP-dependent proteas 100.0 1.4E-27 3E-32 183.8 16.1 145 2-173 22-171 (172)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.9E-27 4.1E-32 182.2 16.1 146 2-173 21-170 (171)
46 KOG0184 20S proteasome, regula 99.9 1.2E-26 2.7E-31 179.7 13.6 154 9-176 61-218 (254)
47 cd01901 Ntn_hydrolase The Ntn 99.9 8.1E-25 1.8E-29 164.6 18.5 141 2-156 21-163 (164)
48 COG5405 HslV ATP-dependent pro 99.4 1.5E-12 3.2E-17 97.2 10.5 149 2-175 25-176 (178)
49 COG3484 Predicted proteasome-t 98.1 7E-05 1.5E-09 58.5 11.8 156 11-180 30-204 (255)
50 PF09894 DUF2121: Uncharacteri 86.7 2.9 6.3E-05 32.7 6.3 50 115-177 131-180 (194)
51 PRK09732 hypothetical protein; 80.3 8.8 0.00019 28.3 6.4 41 140-184 5-45 (134)
52 COG3193 GlcG Uncharacterized p 77.5 12 0.00026 27.9 6.4 38 140-181 6-43 (141)
53 KOG3361 Iron binding protein i 72.4 6.5 0.00014 29.0 3.8 44 94-150 71-114 (157)
54 COG4079 Uncharacterized protei 67.7 20 0.00043 29.3 6.0 115 48-177 37-181 (293)
55 PF03928 DUF336: Domain of unk 60.3 21 0.00045 25.9 4.6 38 141-182 2-39 (132)
56 COG4537 ComGC Competence prote 46.9 41 0.00088 23.6 3.9 28 33-60 49-77 (107)
57 PRK02260 S-ribosylhomocysteina 41.5 1.2E+02 0.0027 23.0 6.2 72 91-162 72-151 (158)
58 PRK02487 hypothetical protein; 40.7 1.1E+02 0.0024 23.0 6.0 35 140-179 21-55 (163)
59 COG1754 Uncharacterized C-term 40.2 32 0.0007 28.7 3.1 72 83-171 78-151 (298)
60 PF11773 PulG: Type II secreto 38.8 85 0.0019 21.1 4.4 38 141-180 33-70 (82)
61 PF04485 NblA: Phycobilisome d 38.5 80 0.0017 19.4 3.9 22 141-162 21-42 (53)
62 PF04539 Sigma70_r3: Sigma-70 38.4 57 0.0012 20.8 3.6 30 37-66 3-32 (78)
63 TIGR02261 benz_CoA_red_D benzo 38.1 65 0.0014 26.6 4.6 44 73-122 94-142 (262)
64 COG4245 TerY Uncharacterized p 37.2 72 0.0016 25.2 4.4 40 146-185 22-61 (207)
65 KOG3652 Uncharacterized conser 35.3 76 0.0017 29.9 4.9 72 26-104 192-263 (1215)
66 TIGR03192 benz_CoA_bzdQ benzoy 34.3 91 0.002 26.2 4.9 46 73-123 121-171 (293)
67 PF07499 RuvA_C: RuvA, C-termi 31.2 30 0.00065 20.4 1.2 32 110-153 13-44 (47)
68 COG3140 Uncharacterized protei 29.6 1.1E+02 0.0024 19.0 3.5 36 115-163 14-49 (60)
69 PRK12413 phosphomethylpyrimidi 29.3 83 0.0018 25.0 3.9 40 108-161 203-242 (253)
70 TIGR02259 benz_CoA_red_A benzo 28.3 1.1E+02 0.0024 27.1 4.6 37 82-123 274-313 (432)
71 PF12385 Peptidase_C70: Papain 27.4 1.6E+02 0.0034 22.6 4.7 42 60-102 97-148 (166)
72 cd04512 Ntn_Asparaginase_2_lik 27.2 3E+02 0.0066 22.5 6.7 63 99-180 165-234 (248)
73 cd04513 Glycosylasparaginase G 26.1 3E+02 0.0064 22.8 6.5 58 107-180 187-248 (263)
74 PRK07105 pyridoxamine kinase; 26.0 1.1E+02 0.0023 25.0 4.0 41 107-161 215-255 (284)
75 PRK10465 hydrogenase 2-specifi 25.4 63 0.0014 24.6 2.3 73 74-160 58-136 (159)
76 PF08383 Maf_N: Maf N-terminal 25.3 64 0.0014 18.0 1.7 12 141-152 22-33 (35)
77 TIGR00687 pyridox_kin pyridoxa 25.3 1E+02 0.0023 25.0 3.9 38 110-161 219-256 (286)
78 PRK12412 pyridoxal kinase; Rev 25.2 1E+02 0.0022 25.0 3.7 39 109-161 208-246 (268)
79 COG0031 CysK Cysteine synthase 24.7 4.3E+02 0.0093 22.3 7.6 94 50-155 144-255 (300)
80 PF01726 LexA_DNA_bind: LexA D 24.0 1.4E+02 0.0029 18.9 3.4 22 44-65 15-36 (65)
81 cd01169 HMPP_kinase 4-amino-5- 24.0 1.2E+02 0.0025 23.8 3.8 40 107-160 201-240 (242)
82 PF11211 DUF2997: Protein of u 23.9 1.1E+02 0.0025 18.2 2.8 33 94-126 3-35 (48)
83 COG4728 Uncharacterized protei 23.3 78 0.0017 22.3 2.3 39 14-52 9-50 (124)
84 cd01173 pyridoxal_pyridoxamine 23.0 1.3E+02 0.0027 23.9 3.9 41 107-161 211-251 (254)
85 COG3363 Archaeal IMP cyclohydr 22.9 3.6E+02 0.0079 20.9 5.9 47 141-187 86-139 (200)
86 PF08269 Cache_2: Cache domain 22.3 1.3E+02 0.0028 20.0 3.3 35 141-180 34-68 (95)
87 PF03681 UPF0150: Uncharacteri 22.1 1E+02 0.0022 17.8 2.4 19 141-159 28-46 (48)
88 cd04702 ASRGL1_like ASRGL1_lik 22.0 3.7E+02 0.008 22.2 6.3 54 107-179 179-236 (261)
89 PF14804 Jag_N: Jag N-terminus 21.5 1.2E+02 0.0025 18.4 2.6 29 141-176 4-32 (52)
90 PRK11508 sulfur transfer prote 21.3 2.3E+02 0.005 20.1 4.4 35 29-67 39-73 (109)
91 PRK12616 pyridoxal kinase; Rev 21.1 1.3E+02 0.0029 24.3 3.7 39 109-161 211-249 (270)
92 PF01458 UPF0051: Uncharacteri 21.1 1.6E+02 0.0034 23.3 4.0 47 91-155 183-229 (229)
93 PF13983 YsaB: YsaB-like lipop 21.0 2.5E+02 0.0055 18.3 4.6 57 48-104 9-73 (77)
94 TIGR00097 HMP-P_kinase phospho 20.0 1.5E+02 0.0033 23.7 3.7 39 109-161 202-240 (254)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-45 Score=291.68 Aligned_cols=184 Identities=62% Similarity=0.945 Sum_probs=171.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|.++..++.+|||+|++|++|++||..+|++.+.+.++.+++.|++++|++++++.+|+++++++|++|++||+|++|
T Consensus 29 ~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~i 108 (212)
T cd03757 29 SEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNI 108 (212)
T ss_pred ccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 57888889999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++++. ..+.++||.+||++++++||+.+.+|
T Consensus 109 iaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~----~~~~~~ms~eea~~l~~~~l~~~~~r 184 (212)
T cd03757 109 LAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQN----NVERTPLSLEEAVSLVKDAFTSAAER 184 (212)
T ss_pred EEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccC----cCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999888899999999999999999999999999999999999621100 01125999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
|+.++++++|++|+++|++++.+++|+|
T Consensus 185 d~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 185 DIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred CcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 9999999999999999999999999998
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-44 Score=280.01 Aligned_cols=170 Identities=23% Similarity=0.430 Sum_probs=163.0
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|..+.+++.+|||+|++|++|++||+.+|++.+.+++|.+++.|++++|++++++.+|++|++++|++|++||+|++|
T Consensus 24 ~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~~r~~P~~v~~i 103 (195)
T cd03759 24 GVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPV 103 (195)
T ss_pred ccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46777778899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeC-eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
|||||++++|+||++||+|++..+. ++|+|+|++.++++||+.|++ +|+.+||++++++||+.+.+
T Consensus 104 i~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~~l~~~~~ 170 (195)
T cd03759 104 VAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRP-------------DMEPDELFETISQALLSAVD 170 (195)
T ss_pred EEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 9999988889999999999998887 999999999999999999995 99999999999999999999
Q ss_pred cccccCCceEEEEEeCCCeeEEee
Q 029724 161 RDIYTGDKLEIVVLNKDGIHREYM 184 (189)
Q Consensus 161 ~d~~s~~~~~i~iit~~g~~~~~~ 184 (189)
||+.++++++|++|+++|++++++
T Consensus 171 rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 171 RDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred hCcccCCceEEEEEcCCcEEEEec
Confidence 999999999999999999999886
No 3
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=272.21 Aligned_cols=169 Identities=26% Similarity=0.385 Sum_probs=160.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh-c-CCCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK-R-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~-r-~~P~~v~ 79 (189)
|.|.++.+++++|||+|++++++++||+.+|++.+.++++.+++.|+++++++++++.+++++++++|.+ | .|||+++
T Consensus 22 ~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~rP~~~~ 101 (193)
T cd03758 22 ARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVN 101 (193)
T ss_pred ccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 5688899999999999999999999999999999999999999999999999999999999999999643 3 3699999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++++|+||++||+|++.+++++|+|+|+++++++||+.|++ +||.+||++++.+||+.+.
T Consensus 102 ~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~a~~~~~ 168 (193)
T cd03758 102 LLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKP-------------DMTVEEALELMKKCIKELK 168 (193)
T ss_pred EEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHH
Confidence 999999986779999999999999999999999999999999999985 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeEEe
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
+||+.++++++|++|+++|++..+
T Consensus 169 ~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 169 KRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred HhccccCCceEEEEEcCCCeEeCC
Confidence 999999999999999999988654
No 4
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=270.93 Aligned_cols=166 Identities=27% Similarity=0.369 Sum_probs=160.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+++.+++.+|||+|++|++|+++|+.+|++.|++++|.+++.|++.+|++++++.+|+++++++|.+|.+||+|++|
T Consensus 21 ~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~~~~~v~~l 100 (188)
T cd03761 21 TAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKGMGLSMGTM 100 (188)
T ss_pred cCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++ +|+||++||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||+.+.+|
T Consensus 101 i~G~D~~-g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~eea~~l~~~~l~~~~~r 166 (188)
T cd03761 101 ICGWDKT-GPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRY-------------DLSVEEAYDLARRAIYHATHR 166 (188)
T ss_pred EEEEeCC-CCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999964 59999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|..++++++|++|+++|++.
T Consensus 167 d~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 167 DAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred cccCCCCeEEEEEcCCceEE
Confidence 99999999999999999875
No 5
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-42 Score=264.13 Aligned_cols=187 Identities=57% Similarity=0.885 Sum_probs=178.3
Q ss_pred CCccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceee
Q 029724 1 MSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFN 80 (189)
Q Consensus 1 ~t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~ 80 (189)
||.|+.|.+|+.+|||+++|+++++.+|+++|+..|.+.+...+..|+++++..|++..+|++|+.+||.+|++||++..
T Consensus 49 ~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ 128 (235)
T KOG0179|consen 49 MSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFN 128 (235)
T ss_pred cccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
|+||+|++|+|.+|+.||.|++.+..+.|.|+++.+++++|+.....++++. ++...+.|+.|+|+++++.+|..|.+
T Consensus 129 ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~--e~~~~~~Ls~e~ai~lv~d~F~SAaE 206 (235)
T KOG0179|consen 129 ILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNL--ENAERTPLSLERAIRLVKDAFTSAAE 206 (235)
T ss_pred eeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCccc--ccCcccccCHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999888654432 45556789999999999999999999
Q ss_pred cccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 161 RDIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 161 ~d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
||+.+|++++|+|++++|++.+++++|.|
T Consensus 207 RdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 207 RDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred cccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 99999999999999999999999999987
No 6
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-41 Score=268.35 Aligned_cols=170 Identities=27% Similarity=0.396 Sum_probs=159.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHHhhc--CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHL-IYQHQHNKQMSCPAMGQLLSNTLYYKR--FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~-~~~~~~g~~i~~~~la~~ls~~~y~~r--~~P~~v 78 (189)
+.|.++.+++.+|||+|++|++|+++|+.+|++.+++++|.+++ .|+++++.+++++.+|+++++++|++| +|||+|
T Consensus 23 ~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~y~~~~~~rP~~v 102 (197)
T cd03760 23 SYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWN 102 (197)
T ss_pred cccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCceE
Confidence 45889999999999999999999999999999999999999987 566789999999999999999999876 899999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
++|+||||++++|+||++||+|++.+++++|+|+|+++++++||+.|+++ ++||.+||++++++||+.+
T Consensus 103 ~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~-----------~~ms~eea~~l~~~~l~~~ 171 (197)
T cd03760 103 TLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKK-----------PDLTEEEARALIEECMKVL 171 (197)
T ss_pred EEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCC-----------CCCCHHHHHHHHHHHHHHH
Confidence 99999999767799999999999999999999999999999999999841 3899999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCeeEE
Q 029724 159 TERDIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~~~ 182 (189)
.+||..++++++|++|+++|+++.
T Consensus 172 ~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 172 YYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred HHhccccCCceEEEEECCCCEEeC
Confidence 999999999999999999998754
No 7
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-41 Score=262.49 Aligned_cols=166 Identities=33% Similarity=0.539 Sum_probs=160.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+.+.+++.+||++|+++++++++|+.+|++.+.+.++.+++.|++.++++++++.+++++++++|.+|+|||+|++|
T Consensus 21 ~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~P~~~~~l 100 (188)
T cd03764 21 SMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLL 100 (188)
T ss_pred ccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +|+.+||++++++||+.+.+|
T Consensus 101 vaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~~~~ea~~l~~~~l~~~~~r 166 (188)
T cd03764 101 IGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKE-------------DMTVEEAKKLAIRAIKSAIER 166 (188)
T ss_pred EEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 999996 569999999999999999999999999999999999985 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|+.++++++|++++++|+++
T Consensus 167 d~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 167 DSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred cCCCCCcEEEEEECCCCeEe
Confidence 99999999999999999664
No 8
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.3e-41 Score=261.64 Aligned_cols=164 Identities=32% Similarity=0.562 Sum_probs=158.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+.+.+++++|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.+++|||+|++|
T Consensus 22 ~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~rP~~v~~i 101 (185)
T TIGR03634 22 SMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLL 101 (185)
T ss_pred cCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++| |+||.+||+|++.+++++++|+|+++++++||+.|++ +||.+||++++++||+.+.+|
T Consensus 102 vaG~d~~g-~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~~l~~~~~r 167 (185)
T TIGR03634 102 VGGVDEEG-PHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYRE-------------DMSVEEAKKLAVRAIKSAIER 167 (185)
T ss_pred EEEEeCCC-CEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 99999765 9999999999999999999999999999999999985 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCe
Q 029724 162 DIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~ 179 (189)
|+.++++++|++|+++|+
T Consensus 168 ~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 168 DVASGNGIDVAVITKDGV 185 (185)
T ss_pred cccCCCCEEEEEEcCCCC
Confidence 999999999999999985
No 9
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-41 Score=270.91 Aligned_cols=166 Identities=31% Similarity=0.490 Sum_probs=159.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC--CCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRF--FPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~--~P~~v~ 79 (189)
|+|.++.+++++|||+|+||++|++||+.+|+|.|+++++.+++.|++.+|++|+++.+++++++++|+++. |||+|+
T Consensus 51 t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~ 130 (236)
T COG0638 51 TSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVS 130 (236)
T ss_pred CCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEE
Confidence 688999999999999999999999999999999999999999999999999999999999999999999886 999999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||+|+ ++|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.|||++++++||+.+.
T Consensus 131 ~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~-------------~m~~eeai~la~~al~~a~ 196 (236)
T COG0638 131 LLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYRE-------------DLSLEEAIELAVKALRAAI 196 (236)
T ss_pred EEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHH
Confidence 99999998 779999999999999999999999999999999999985 9999999999999999999
Q ss_pred hcccccCCceEEEEEeC-CCeeE
Q 029724 160 ERDIYTGDKLEIVVLNK-DGIHR 181 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~-~g~~~ 181 (189)
+||..++++++|+++++ +|.+.
T Consensus 197 ~rd~~s~~~~~v~vi~~~~~~~~ 219 (236)
T COG0638 197 ERDAASGGGIEVAVITKDEGFRK 219 (236)
T ss_pred hccccCCCCeEEEEEEcCCCeEE
Confidence 99998999999999999 55554
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-40 Score=260.21 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=159.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+++.+++.+|||+|++|++|+++|+.+|++.+.+.++.+++.|++.++++++++.+|+++++++|.+| +||+|++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~i 99 (188)
T cd03762 21 STGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-EMLSAGII 99 (188)
T ss_pred cCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc-ccceeeEE
Confidence 57888899999999999999999999999999999999999999999999999999999999999999876 68999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++.+|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||+.+.+|
T Consensus 100 i~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~-------------~~s~~ea~~l~~~al~~~~~r 166 (188)
T cd03762 100 VAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKP-------------GMTLEECIKFVKNALSLAMSR 166 (188)
T ss_pred EEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999976669999999999999999999999999999999999985 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|+.++++++|++|+++|++.+
T Consensus 167 d~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 167 DGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred ccccCCCEEEEEECCCCEEEe
Confidence 999999999999999999754
No 11
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-40 Score=255.94 Aligned_cols=168 Identities=36% Similarity=0.600 Sum_probs=161.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|..+.+++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.+++++++++|.+|.+||++++|
T Consensus 21 ~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~P~~~~~i 100 (189)
T cd01912 21 SAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLI 100 (189)
T ss_pred ccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 57888889999999999999999999999999999999999999999999999999999999999999988789999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++++|+++++++++||+.|++ +|+.+||++++.+||+.+.+|
T Consensus 101 v~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~-------------~~s~~ea~~~~~~~l~~~~~~ 167 (189)
T cd01912 101 VGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKP-------------DMTLEEAVELVKKAIDSAIER 167 (189)
T ss_pred EEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999986779999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|+.++++++|++|+++|++.+
T Consensus 168 d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 168 DLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred cCccCCcEEEEEECCCCEEEc
Confidence 999999999999999998754
No 12
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-39 Score=255.00 Aligned_cols=166 Identities=22% Similarity=0.351 Sum_probs=158.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+.+.+++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.+|+++++.+|.++ .||+|++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~-~p~~v~~i 99 (189)
T cd03763 21 TEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ-GHIGAALV 99 (189)
T ss_pred ccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-CccceeEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999998765 49999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++| |+||.+||+|++.+++++++|+|++.++++||+.|++ +||.+||++++++||+.+.+|
T Consensus 100 vaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~-------------~ls~~ea~~l~~~~l~~~~~r 165 (189)
T cd03763 100 LGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKP-------------DMTEEEAKKLVCEAIEAGIFN 165 (189)
T ss_pred EEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 99999665 9999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|+.++++++|++|+++|+++.
T Consensus 166 d~~~~~~~~v~ii~~~g~~~~ 186 (189)
T cd03763 166 DLGSGSNVDLCVITKDGVEYL 186 (189)
T ss_pred cCcCCCceEEEEEcCCcEEEe
Confidence 999999999999999998864
No 13
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.4e-39 Score=264.05 Aligned_cols=166 Identities=26% Similarity=0.344 Sum_probs=158.0
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
+.|+++.+++.+|||+|++|++++++|+.+|++.+.+++|.+++.|++++|++|+++.+|++|++++|++|..|+.+++|
T Consensus 60 ~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~i 139 (247)
T PTZ00488 60 TAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTM 139 (247)
T ss_pred ccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999998667777799
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++| |+||++||+|++.+++++++|+|+.+++++||+.|++ +||.+||++++++||+.+.+|
T Consensus 140 iaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~-------------dms~eEai~l~~kal~~~~~R 205 (247)
T PTZ00488 140 ICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKW-------------DLNDEEAQDLGRRAIYHATFR 205 (247)
T ss_pred EEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 99999655 9999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|..++++++|++|+++|++.
T Consensus 206 d~~sg~~~ei~iI~k~g~~~ 225 (247)
T PTZ00488 206 DAYSGGAINLYHMQKDGWKK 225 (247)
T ss_pred ccccCCCeEEEEEcCCccEE
Confidence 99999999999999999654
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.2e-38 Score=253.21 Aligned_cols=167 Identities=24% Similarity=0.366 Sum_probs=154.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh---cCCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK---RFFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~---r~~P~~v 78 (189)
|.|+++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.+|++|++++|.. .+|||+|
T Consensus 23 ~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~rp~~v 102 (219)
T TIGR03690 23 TQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNLPAAMQGLAV 102 (219)
T ss_pred ccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhhhccCCceE
Confidence 5689999999999999999999999999999999999999999999999999999999999999999764 3789999
Q ss_pred eeEEEEEcCC-CceEEEEEcCCCC-eeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 79 FNVLGGLDNE-GKGCVYTYDAVGS-YERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 79 ~~ivaG~D~~-g~p~Ly~iD~~G~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
++||||||++ ++|+||++||+|+ +..++++|+|+|+++++++||+.|++ +||.+||++++++||.
T Consensus 103 ~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~-------------~ms~eeai~l~~~al~ 169 (219)
T TIGR03690 103 VPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSP-------------DLDEDDALRVAVEALY 169 (219)
T ss_pred EEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCC-------------CcCHHHHHHHHHHHHH
Confidence 9999999974 6799999999995 66778999999999999999999985 9999999999999999
Q ss_pred HhHhcccccCCc-------eEEEEEeCCCeeE
Q 029724 157 SATERDIYTGDK-------LEIVVLNKDGIHR 181 (189)
Q Consensus 157 ~~~~~d~~s~~~-------~~i~iit~~g~~~ 181 (189)
.+.+||..+++. ++|++|+++|++.
T Consensus 170 ~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 170 DAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred HHHhcccccCCcccccccccEEEEEccCceEE
Confidence 999999867764 3999999999765
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-38 Score=252.63 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=147.4
Q ss_pred ecccCeeEEec----CceEEEecCChHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHhh----c------C
Q 029724 9 SRDYSKIIKLA----DKCVMASSGFQADVKALQKLLAARHLIYQHQHNK-QMSCPAMGQLLSNTLYYK----R------F 73 (189)
Q Consensus 9 ~~~~~Ki~~I~----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~-~i~~~~la~~ls~~~y~~----r------~ 73 (189)
.++.+|||+|+ +|++|+.||..||++.+++.+|.+++.|++++|+ +++++.+|+++++++++. . .
T Consensus 27 ~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~ 106 (236)
T cd03765 27 ISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAG 106 (236)
T ss_pred ccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 34789999998 8999999999999999999999999999999999 899999999999987541 1 4
Q ss_pred CCcceeeEEEEEcCCCceEEEEEcCCCCeeee----CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHH
Q 029724 74 FPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV----GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVD 149 (189)
Q Consensus 74 ~P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~----~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~ 149 (189)
|||+|++||||||++.+|+||++||+|++.++ +|+|+|. +++++++||+.|++ +||.+||++
T Consensus 107 rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~-------------~ms~eeai~ 172 (236)
T cd03765 107 IDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITP-------------DTSLEDAAK 172 (236)
T ss_pred cceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCC-------------CCCHHHHHH
Confidence 79999999999997666999999999999998 5689996 69999999999995 999999999
Q ss_pred HHHHHHHHhHhcccccCCceEEEEEeCCCeeE
Q 029724 150 LVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 150 ~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~ 181 (189)
++++||..++.||..++.+++|++|+++|++.
T Consensus 173 la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 173 CALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 99999999999999999999999999999876
No 16
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-39 Score=238.40 Aligned_cols=170 Identities=23% Similarity=0.451 Sum_probs=165.1
Q ss_pred eeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeEEEEEc
Q 029724 7 ILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 86 (189)
Q Consensus 7 i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~ivaG~D 86 (189)
..+.+++|||+|+|++++|.+|+..|+|++.++++...+.|++++++.|.|+.+++++|.++|++|+-||.+.+||||+|
T Consensus 34 tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~ 113 (204)
T KOG0180|consen 34 TISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLD 113 (204)
T ss_pred eeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCeee-eCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhccccc
Q 029724 87 NEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 165 (189)
Q Consensus 87 ~~g~p~Ly~iD~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s 165 (189)
++++|+|+.+|..|+... .+|+++|++++.++++||..|++ +|..|+.++.+.++|..+.+||+.|
T Consensus 114 ~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~p-------------nmepd~LFetisQa~Lna~DRDalS 180 (204)
T KOG0180|consen 114 DDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEP-------------NMEPDELFETISQALLNAVDRDALS 180 (204)
T ss_pred CCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHhHhhhhhhc
Confidence 999999999999999975 57999999999999999999995 9999999999999999999999999
Q ss_pred CCceEEEEEeCCCeeEEeeccCCC
Q 029724 166 GDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 166 ~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
||+..|.||+|+++..+++|.|||
T Consensus 181 GwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 181 GWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred cCCeEEEEEccchhhhhhhhhcCC
Confidence 999999999999999999999998
No 17
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=250.34 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=151.8
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--hhc--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLY--YKR--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y--~~r--~~P~~v~ 79 (189)
+.++.+++.+||++|++|++|+++|..+|++.+++.++.+++.|++++|++++++.++++|+++++ +++ +|||+|+
T Consensus 49 ~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~ 128 (227)
T cd03750 49 SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVS 128 (227)
T ss_pred ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheE
Confidence 567777899999999999999999999999999999999999999999999999999999999994 444 7899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++ +|+||.+||+|++.+++++|+|+|++.++++||++|++ +|+++||++++++||+.+.
T Consensus 129 ~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~ms~eeai~l~~~~l~~~~ 194 (227)
T cd03750 129 LLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNE-------------DLELEDAIHTAILTLKEGF 194 (227)
T ss_pred EEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHh
Confidence 999999965 59999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCC-CeeE
Q 029724 160 ERDIYTGDKLEIVVLNKD-GIHR 181 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~-g~~~ 181 (189)
+||. ++++++|++++++ |.+.
T Consensus 195 ~~~l-~~~~iev~iv~~~~~~~~ 216 (227)
T cd03750 195 EGQM-TEKNIEIGICGETKGFRL 216 (227)
T ss_pred cccC-CCCcEEEEEEECCCCEEE
Confidence 9875 8899999999986 5653
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-37 Score=246.11 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=149.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh----cCCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK----RFFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~----r~~P~~ 77 (189)
+.|..+.+++.+||++|++|++|++||+.+|++.+.++++.+++.|++++|++|+++.++++|+.+++.+ +.|||+
T Consensus 50 ~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~ 129 (213)
T cd03752 50 TSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFG 129 (213)
T ss_pred CCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccce
Confidence 4566777789999999999999999999999999999999999999999999999999999999987432 368999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++|+||||++.+|+||.+||+|++.+++++|+|+|+..++++||+.|++ +|+.+||++++++||..
T Consensus 130 v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~-------------~ms~eea~~l~~~al~~ 196 (213)
T cd03752 130 VSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKD-------------DMTLEEALALAVKVLSK 196 (213)
T ss_pred eEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHH
Confidence 99999999976669999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEE
Q 029724 158 ATERDIYTGDKLEIVVL 174 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~ii 174 (189)
+.+||..++.+++|+++
T Consensus 197 ~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 197 TMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHhccCCCCCcEEEEEC
Confidence 99999889999999875
No 19
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-37 Score=244.81 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=144.9
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r--~~P~~v~ 79 (189)
+.++.+++.+||++|++|++|++||+++|++.+.+.++.+++.|++++|++++++.+++++++++ |++| +|||+|+
T Consensus 49 ~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs 128 (207)
T cd03755 49 AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGIS 128 (207)
T ss_pred CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeE
Confidence 34566678999999999999999999999999999999999999999999999999999999999 5554 7899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..+.
T Consensus 129 ~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~~l~~~~ 195 (207)
T cd03755 129 TLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKE-------------EMTRDDTIKLAIKALLEVV 195 (207)
T ss_pred EEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHh
Confidence 999999987789999999999999999999999999999999999995 9999999999999999998
Q ss_pred hcccccCCceEEEEE
Q 029724 160 ERDIYTGDKLEIVVL 174 (189)
Q Consensus 160 ~~d~~s~~~~~i~ii 174 (189)
+ .+++++||+++
T Consensus 196 ~---~~~~~~e~~~~ 207 (207)
T cd03755 196 Q---SGSKNIELAVM 207 (207)
T ss_pred C---CCCCeEEEEEC
Confidence 6 57889999985
No 20
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.6e-37 Score=249.99 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=154.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--h--cCCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--K--RFFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~--r~~P~~ 77 (189)
+.|..+.+++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.++++++++.+++.++..++. + ++|||+
T Consensus 52 s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~ 131 (253)
T PTZ00246 52 SSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFG 131 (253)
T ss_pred CCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCC
Confidence 567777788899999999999999999999999999999999999999999999999999999998754 2 378999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||+.
T Consensus 132 v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~-------------~ms~eeai~l~~~al~~ 198 (253)
T PTZ00246 132 VSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKE-------------DLTLEQGLLLAAKVLTK 198 (253)
T ss_pred EEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHH
Confidence 99999999976679999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEEeCCC
Q 029724 158 ATERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit~~g 178 (189)
+.++|..++++++|++|+++|
T Consensus 199 ~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 199 SMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHhccCCCCCcEEEEEEecCC
Confidence 999999999999999999886
No 21
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.1e-37 Score=244.60 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=154.0
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--hc--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--KR--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~r--~~P~~v~ 79 (189)
+.++..++.+||++|+++++|++||+.+|++.+.+.++.++..|++++|++++++.++++++++++. ++ .|||+|+
T Consensus 51 ~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~ 130 (224)
T TIGR03633 51 SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVA 130 (224)
T ss_pred ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceE
Confidence 5567778999999999999999999999999999999999999999999999999999999999854 32 6899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||+|+ ++|+||.+||+|++.+++++++|+|+.+++++||+.|++ +|+.+||++++++||..+.
T Consensus 131 ~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~~~eeai~l~~~al~~~~ 196 (224)
T TIGR03633 131 LLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYRE-------------DLSLDEAIELALKALYSAV 196 (224)
T ss_pred EEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHh
Confidence 99999994 569999999999999999999999999999999999995 9999999999999999988
Q ss_pred hcccccCCceEEEEEeCCCeeEEeec
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
+ |+.++++++|++|+++|..++.+.
T Consensus 197 ~-d~~~~~~i~i~ii~~~g~~~~~~~ 221 (224)
T TIGR03633 197 E-DKLTPENVEVAYITVEDKKFRKLS 221 (224)
T ss_pred c-ccCCCCcEEEEEEEcCCCcEEECC
Confidence 7 889999999999999996655543
No 22
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.1e-36 Score=234.45 Aligned_cols=160 Identities=29% Similarity=0.459 Sum_probs=152.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcC--CCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRF--FPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~--~P~~v~ 79 (189)
|.|+.+..++.+|||+|+++++++++|..+|++.+.+.++.++..|++++|++++++.+++++++++|.++. +||+++
T Consensus 21 ~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~ 100 (182)
T cd01906 21 TSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVS 100 (182)
T ss_pred CCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCccChheE
Confidence 567777788999999999999999999999999999999999999999999999999999999999998875 999999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +||.+||++++++||+.+.
T Consensus 101 ~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~~s~~ea~~l~~~~l~~~~ 167 (182)
T cd01906 101 LLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKP-------------DMTLEEAIELALKALKSAL 167 (182)
T ss_pred EEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccC-------------CCCHHHHHHHHHHHHHHHH
Confidence 999999986779999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEE
Q 029724 160 ERDIYTGDKLEIVVL 174 (189)
Q Consensus 160 ~~d~~s~~~~~i~ii 174 (189)
++|..++++++|+++
T Consensus 168 ~~~~~~~~~~~i~ii 182 (182)
T cd01906 168 ERDLYSGGNIEVAVI 182 (182)
T ss_pred cccCCCCCCEEEEEC
Confidence 999989999999875
No 23
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-36 Score=241.99 Aligned_cols=158 Identities=18% Similarity=0.282 Sum_probs=145.3
Q ss_pred ceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc--CCCcceee
Q 029724 5 YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR--FFPYYSFN 80 (189)
Q Consensus 5 ~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r--~~P~~v~~ 80 (189)
..+.+++.+|||+|+++++|++||+.+|++.+.+.+|.+++.|+++++++++++.+|+++++++ |+++ .|||+|++
T Consensus 52 ~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ 131 (215)
T cd03754 52 KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSM 131 (215)
T ss_pred cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEE
Confidence 4555668899999999999999999999999999999999999999999999999999999974 6654 67999999
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHh
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCFASA 158 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~m--s~~ea~~~~~~~l~~~ 158 (189)
|+||||++++|+||.+||+|++.+++++|+|+|++.++++||+.|++. .+| +.+||++++++||..+
T Consensus 132 ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~-----------~~~~~s~eeai~l~~~al~~~ 200 (215)
T cd03754 132 ILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKK-----------PDLIESYEETVELAISCLQTV 200 (215)
T ss_pred EEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccc-----------cccCCCHHHHHHHHHHHHHHH
Confidence 999999876799999999999999999999999999999999999962 147 9999999999999999
Q ss_pred HhcccccCCceEEEEE
Q 029724 159 TERDIYTGDKLEIVVL 174 (189)
Q Consensus 159 ~~~d~~s~~~~~i~ii 174 (189)
.+||. +++++||+|+
T Consensus 201 ~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 201 LSTDF-KATEIEVGVV 215 (215)
T ss_pred hcccC-CCCcEEEEEC
Confidence 99995 5899999875
No 24
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=6.2e-36 Score=233.25 Aligned_cols=160 Identities=29% Similarity=0.474 Sum_probs=147.9
Q ss_pred Cccceeeecc-cCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----HhhcCCCc
Q 029724 2 STGYSILSRD-YSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL----YYKRFFPY 76 (189)
Q Consensus 2 t~G~~i~~~~-~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~----y~~r~~P~ 76 (189)
+.|+.+..++ .+|||+|++|++++++|..+|++.+.+.++.+++.|++.++.+++++.+++.+++.+ +..+++|+
T Consensus 25 ~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~ 104 (190)
T PF00227_consen 25 SYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPY 104 (190)
T ss_dssp EETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred ccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCc
Confidence 4577886766 699999999999999999999999999999999999999999999997777776666 33457899
Q ss_pred ceeeEEEEEcCCCceEEEEEcCCCCeeee-CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029724 77 YSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 155 (189)
Q Consensus 77 ~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l 155 (189)
++++|+||||++++|+||.+||+|++.++ +++++|+|++.++++||+.|++ +|+.+||++++++||
T Consensus 105 ~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~-------------~~~~~ea~~~~~~~l 171 (190)
T PF00227_consen 105 GVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP-------------DLSLEEAIELALKAL 171 (190)
T ss_dssp SEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT-------------TSSHHHHHHHHHHHH
T ss_pred cccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccC-------------CCCHHHHHHHHHHHH
Confidence 99999999998888999999999999999 6999999999999999999984 999999999999999
Q ss_pred HHhHhcccccCCceEEEEE
Q 029724 156 ASATERDIYTGDKLEIVVL 174 (189)
Q Consensus 156 ~~~~~~d~~s~~~~~i~ii 174 (189)
+.+.++|..++++++|+||
T Consensus 172 ~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 172 KEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHBTTSTSEEEEEEE
T ss_pred HHHHhhCCccCCeEEEEEC
Confidence 9999999999999999986
No 25
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.3e-36 Score=242.61 Aligned_cols=166 Identities=20% Similarity=0.284 Sum_probs=152.2
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r--~~P~~v~ 79 (189)
+.++..++.+||++|++|++|++||..+|++.++++++.+++.|++.+|++++++.++++++++++.+ + .|||+|+
T Consensus 58 ~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~ 137 (241)
T PRK03996 58 SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVA 137 (241)
T ss_pred CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheE
Confidence 45666778999999999999999999999999999999999999999999999999999999998543 2 6899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..+.
T Consensus 138 ~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~~s~eeai~l~~~al~~~~ 203 (241)
T PRK03996 138 LLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKE-------------DLSLEEAIELALKALAKAN 203 (241)
T ss_pred EEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhccc-------------CCCHHHHHHHHHHHHHHHh
Confidence 999999965 49999999999999999999999999999999999995 9999999999999999998
Q ss_pred hcccccCCceEEEEEeCCCeeEEee
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREYM 184 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~~ 184 (189)
++ ..++++++|++++++|..++.+
T Consensus 204 ~~-~~~~~~i~i~ii~~~~~~~~~~ 227 (241)
T PRK03996 204 EG-KLDPENVEIAYIDVETKKFRKL 227 (241)
T ss_pred cc-CCCCCcEEEEEEECCCCcEEEC
Confidence 76 4689999999999998655544
No 26
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=3.5e-36 Score=238.86 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=147.1
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--hhc--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLY--YKR--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y--~~r--~~P~~v~ 79 (189)
+.++..++.+|||+|+++++++++|..+|++.+.+.++.+++.|++++|++++++.+|++++++++ .++ .|||+|+
T Consensus 49 ~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~ 128 (209)
T cd01911 49 SKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVS 128 (209)
T ss_pred ccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhhe
Confidence 345666899999999999999999999999999999999999999999999999999999999884 433 6799999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++++|+||.+||.|++.+++++++|+|+..++++||+.|++ +|+.+||++++++||..+.
T Consensus 129 ~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~-------------~ms~~ea~~l~~~~l~~~~ 195 (209)
T cd01911 129 LLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKK-------------DLTLEEAIKLALKALKEVL 195 (209)
T ss_pred EEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhccc-------------CCCHHHHHHHHHHHHHHHH
Confidence 999999988779999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEE
Q 029724 160 ERDIYTGDKLEIVVL 174 (189)
Q Consensus 160 ~~d~~s~~~~~i~ii 174 (189)
+||. ++++++|+++
T Consensus 196 ~~d~-~~~~~~i~i~ 209 (209)
T cd01911 196 EEDK-KAKNIEIAVV 209 (209)
T ss_pred hccC-CCCcEEEEEC
Confidence 9998 9999999875
No 27
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-36 Score=238.27 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=146.7
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--h--cCCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--K--RFFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~--r~~P~~v~ 79 (189)
+.++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|+++++++++++.++++++++++. + ++|||+++
T Consensus 50 ~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~ 129 (211)
T cd03756 50 SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVA 129 (211)
T ss_pred CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEE
Confidence 4566678999999999999999999999999999999999999999999999999999999998854 3 37899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||+. +|+||.+||+|++.+++++++|+|++.++++||+.|++ +|+.+||++++++||..+.
T Consensus 130 ~ll~G~D~~-~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------------~m~~~ea~~l~~~~l~~~~ 195 (211)
T cd03756 130 LLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKE-------------DMSLEEAIELALKALYAAL 195 (211)
T ss_pred EEEEEEeCC-CCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHh
Confidence 999999965 59999999999999999999999999999999999995 9999999999999999998
Q ss_pred hcccccCCceEEEEEe
Q 029724 160 ERDIYTGDKLEIVVLN 175 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit 175 (189)
++|. ++++++|++|+
T Consensus 196 ~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 196 EENE-TPENVEIAYVT 210 (211)
T ss_pred cccC-CCCcEEEEEEe
Confidence 8775 99999999997
No 28
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-36 Score=237.62 Aligned_cols=156 Identities=18% Similarity=0.239 Sum_probs=144.8
Q ss_pred eecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--h--cCCCcceeeEEE
Q 029724 8 LSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--K--RFFPYYSFNVLG 83 (189)
Q Consensus 8 ~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~--r~~P~~v~~iva 83 (189)
..++.+|||+|+++++|++||+.+|++.+.++++.+++.|+++++++++++.+|++++.+++. + +.|||+|++|||
T Consensus 51 l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~ 130 (211)
T cd03749 51 LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIA 130 (211)
T ss_pred cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 345779999999999999999999999999999999999999999999999999999998854 3 378999999999
Q ss_pred EEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhccc
Q 029724 84 GLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 163 (189)
Q Consensus 84 G~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~ 163 (189)
|||++| |+||.+||+|++.+++++|+|+|++.++++||+.|+++ ++|+.+||+++++++|+.++.+|.
T Consensus 131 G~D~~g-p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~-----------~~ms~ee~i~~~~~~l~~~~~~~~ 198 (211)
T cd03749 131 GYDESG-PHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEF-----------EDCSLEELIKHALRALRETLPGEQ 198 (211)
T ss_pred EEcCCC-CeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccc-----------cCCCHHHHHHHHHHHHHHHhccCC
Confidence 999665 99999999999999999999999999999999999852 489999999999999999999886
Q ss_pred -ccCCceEEEEEe
Q 029724 164 -YTGDKLEIVVLN 175 (189)
Q Consensus 164 -~s~~~~~i~iit 175 (189)
.++.++||++|+
T Consensus 199 ~~~~~~iei~ii~ 211 (211)
T cd03749 199 ELTIKNVSIAIVG 211 (211)
T ss_pred CCCCCcEEEEEEC
Confidence 899999999984
No 29
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.9e-36 Score=237.06 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=143.3
Q ss_pred ceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh----cCCCcceee
Q 029724 5 YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK----RFFPYYSFN 80 (189)
Q Consensus 5 ~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~----r~~P~~v~~ 80 (189)
..+..++.+|||+|++|++|+++|+++|++.++++++.+++.|++++|++++++.++++|+++++.+ .+|||+|++
T Consensus 53 ~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~ 132 (212)
T cd03751 53 KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSV 132 (212)
T ss_pred cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEE
Confidence 4555678899999999999999999999999999999999999999999999999999999987542 268999999
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
||||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++ +||.+||+++++++|..+++
T Consensus 133 li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~-------------dms~eeai~l~~~~L~~~~~ 198 (212)
T cd03751 133 LLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFS-------------ELTCREAVKEAAKIIYIVHD 198 (212)
T ss_pred EEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHhh
Confidence 99999955 59999999999999999999999999999999999995 99999999999999999998
Q ss_pred cccccCCceEEEEE
Q 029724 161 RDIYTGDKLEIVVL 174 (189)
Q Consensus 161 ~d~~s~~~~~i~ii 174 (189)
.+.....++||+++
T Consensus 199 ~~~~~~~~iei~~~ 212 (212)
T cd03751 199 EIKDKAFELELSWV 212 (212)
T ss_pred ccCCCCccEEEEEC
Confidence 65567788998874
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-35 Score=231.41 Aligned_cols=155 Identities=19% Similarity=0.233 Sum_probs=142.9
Q ss_pred ceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c-------CCC
Q 029724 5 YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R-------FFP 75 (189)
Q Consensus 5 ~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r-------~~P 75 (189)
.++..++.+||++|++|++|+++|+.+|++.+.+.++.+++.|++.+|++++++.+++++++++|.. + .||
T Consensus 50 ~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP 129 (213)
T cd03753 50 PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRP 129 (213)
T ss_pred cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCccccccccccc
Confidence 3455678899999999999999999999999999999999999999999999999999999999652 1 489
Q ss_pred cceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029724 76 YYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 155 (189)
Q Consensus 76 ~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l 155 (189)
|+|++||||||++ +|+||.+||+|++.+++++++|++++.++++|++.|++ +|+.+||++++++||
T Consensus 130 ~~v~~ii~G~D~~-gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~-------------~ls~eeai~l~~~~l 195 (213)
T cd03753 130 FGVALLIAGVDEN-GPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHK-------------DMTLEEAEKLALSIL 195 (213)
T ss_pred ceEEEEEEEEcCC-CCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccC-------------CCCHHHHHHHHHHHH
Confidence 9999999999964 59999999999999999999999999999999999995 999999999999999
Q ss_pred HHhHhcccccCCceEEEEE
Q 029724 156 ASATERDIYTGDKLEIVVL 174 (189)
Q Consensus 156 ~~~~~~d~~s~~~~~i~ii 174 (189)
+.+.+++ .++++++|+++
T Consensus 196 ~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 196 KQVMEEK-LNSTNVELATV 213 (213)
T ss_pred HHHhccc-CCCCcEEEEEC
Confidence 9888766 78899999985
No 31
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-35 Score=223.21 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=147.6
Q ss_pred eeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh-------hc--CCCc
Q 029724 6 SILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY-------KR--FFPY 76 (189)
Q Consensus 6 ~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~-------~r--~~P~ 76 (189)
...++++.||++|++||+|++||+.+|++++++++|.++++|++.||++|+++.+.+.++++... .+ .|||
T Consensus 58 Lm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPF 137 (241)
T KOG0176|consen 58 LMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPF 137 (241)
T ss_pred ccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCc
Confidence 34567899999999999999999999999999999999999999999999999999999998831 22 4899
Q ss_pred ceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 77 YSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 77 ~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
||++|+||+|.+| |+||+.||+|++.++++-|+|+|+..+.+.|++.|++ +|+++||+.+++..|+
T Consensus 138 GValliAG~D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~-------------~ltL~ea~~~~L~iLk 203 (241)
T KOG0176|consen 138 GVALLIAGHDETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHK-------------DLTLKEAEKIVLKILK 203 (241)
T ss_pred ceEEEEeeccCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHHHhh-------------cccHHHHHHHHHHHHH
Confidence 9999999999555 9999999999999999999999999999999999996 9999999999999999
Q ss_pred HhHhcccccCCceEEEEEeCCC-eeE
Q 029724 157 SATERDIYTGDKLEIVVLNKDG-IHR 181 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~iit~~g-~~~ 181 (189)
.+++.. ++.+|+++.+++++| .++
T Consensus 204 qVMeeK-l~~~Nvev~~vt~e~~f~~ 228 (241)
T KOG0176|consen 204 QVMEEK-LNSNNVEVAVVTPEGEFHI 228 (241)
T ss_pred HHHHHh-cCccceEEEEEcccCceEe
Confidence 999865 577899999999985 543
No 32
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5e-34 Score=229.02 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=142.3
Q ss_pred cccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHhh---cCCCcceeeEEEEE
Q 029724 10 RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYK---RFFPYYSFNVLGGL 85 (189)
Q Consensus 10 ~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g-~~i~~~~la~~ls~~~y~~---r~~P~~v~~ivaG~ 85 (189)
++.+|||+|+||++|+++|+.+|++.++++++.+++.|++.++ .+++++.+|+++++.++.. +.|||+|++|+|||
T Consensus 48 ~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~ 127 (228)
T TIGR03691 48 RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEV 127 (228)
T ss_pred CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEE
Confidence 5789999999999999999999999999999999999999997 7899999999888877532 46799999999999
Q ss_pred cC-CCceEEEEEcCCCCeeeeC-eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH--hc
Q 029724 86 DN-EGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT--ER 161 (189)
Q Consensus 86 D~-~g~p~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~--~~ 161 (189)
|+ +.+|+||.+||+|++.++. ++|+|+|++.++++||++|++ +||.+||++++++||+.+. +|
T Consensus 128 d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~-------------~ms~eeai~la~~aL~~~~~~~r 194 (228)
T TIGR03691 128 GETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRD-------------GLSLADALGLAVQALRAGGNGEK 194 (228)
T ss_pred cCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHhcccc
Confidence 85 4569999999999999976 899999999999999999995 9999999999999999995 46
Q ss_pred ccccCCceEEEEEeCCC
Q 029724 162 DIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g 178 (189)
|..++.++||+++++++
T Consensus 195 ~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 195 RELDAASLEVAVLDRSR 211 (228)
T ss_pred ccCCccceEEEEEeCCC
Confidence 67899999999999765
No 33
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-34 Score=215.14 Aligned_cols=171 Identities=28% Similarity=0.389 Sum_probs=163.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|+|.+|.+|..+||.+|.|+|+|+.||.+||.|.+.+.++..+..|..++++++++...|+.++++.|++|- -+.+++|
T Consensus 40 s~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re-~L~Agli 118 (224)
T KOG0174|consen 40 STGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYRE-MLSAGLI 118 (224)
T ss_pred cchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHH-hhhcceE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999883 2789999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||+..++++|.+-..|++.+.++..-|+|+.+++++|+..|++ +|++||+++++++|+..+++|
T Consensus 119 VAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~-------------nMt~EE~~~fvk~Av~lAi~r 185 (224)
T KOG0174|consen 119 VAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRP-------------NMTLEECVRFVKNAVSLAIER 185 (224)
T ss_pred EeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCC-------------CCCHHHHHHHHHHHHHHHHhc
Confidence 9999998778999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEeecc
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYMEL 186 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~~~ 186 (189)
|-.||+.+.+.+|+++|++++.+..
T Consensus 186 DGsSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 186 DGSSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred cCCCCCEEEEEEEccCCceEEEecC
Confidence 9999999999999999999998864
No 34
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=221.37 Aligned_cols=166 Identities=28% Similarity=0.370 Sum_probs=160.9
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|+|++|.+.+++||.+||++..-.++|-+||||.+-+.+.++|+.|++++++.|++...++.||+++|++|...+.+.++
T Consensus 92 s~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtM 171 (285)
T KOG0175|consen 92 SAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTM 171 (285)
T ss_pred cccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999667899999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|+|||+.| |.||.+|..|+..+.+..++|+|+.+++++|+..|++ ||+.+||.+|++.++.+|..|
T Consensus 172 i~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~-------------dls~eEA~~L~rrAI~hAThR 237 (285)
T KOG0175|consen 172 IAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRY-------------DLSDEEAYDLARRAIYHATHR 237 (285)
T ss_pred EeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCCCC-------------CCCHHHHHHHHHHHHHHHHhc
Confidence 99999876 9999999999999999999999999999999999996 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|+.||+-+.++.|+++|...
T Consensus 238 DaySGG~vnlyHv~edGW~~ 257 (285)
T KOG0175|consen 238 DAYSGGVVNLYHVKEDGWVK 257 (285)
T ss_pred ccccCceEEEEEECCcccee
Confidence 99999999999999999654
No 35
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-33 Score=209.05 Aligned_cols=169 Identities=24% Similarity=0.360 Sum_probs=159.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh-hc-CCCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY-KR-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~-~r-~~P~~v~ 79 (189)
+.|-.++..+++|++.+++++.|+.+|..+|+.++.+++.+.++.|++++|.++||+.+|+++.+.+.+ .| .+||.|+
T Consensus 22 ~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LRsr~~yqV~ 101 (200)
T KOG0177|consen 22 ARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLRSRTPYQVN 101 (200)
T ss_pred hcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 457778889999999999999999999999999999999999999999999999999999999999965 34 6799999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+++||+|++.+|.||++|..|+..+.++++.|.++.++.++|+++|++ +||.+||+++..+|+.++.
T Consensus 102 ~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~p-------------dmt~eea~~lmkKCv~El~ 168 (200)
T KOG0177|consen 102 ILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKP-------------DMTIEEALDLMKKCVLELK 168 (200)
T ss_pred EEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCC-------------CCCHHHHHHHHHHHHHHHH
Confidence 999999998779999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeEEe
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
.|-.....++.|.||+|+|++...
T Consensus 169 kRlvin~~~f~v~IVdkdGir~~~ 192 (200)
T KOG0177|consen 169 KRLVINLPGFIVKIVDKDGIRKLD 192 (200)
T ss_pred HhcccCCCCcEEEEEcCCCceecc
Confidence 999888899999999999987654
No 36
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=210.90 Aligned_cols=157 Identities=19% Similarity=0.301 Sum_probs=145.0
Q ss_pred eecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--hhc--CCCcceeeEEE
Q 029724 8 LSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLY--YKR--FFPYYSFNVLG 83 (189)
Q Consensus 8 ~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y--~~r--~~P~~v~~iva 83 (189)
..+.+.||..+++||+|+++|+.||++.|++++|.+|+.|++..+.|++++.++++|+++.+ ++- .||||+++|++
T Consensus 56 ~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~ 135 (249)
T KOG0183|consen 56 DERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIG 135 (249)
T ss_pred hhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999984 322 57999999999
Q ss_pred EEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhccc
Q 029724 84 GLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 163 (189)
Q Consensus 84 G~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~ 163 (189)
|+|++|.|+||.+||+|.+++|.+.|+|.+++.+..+||+.|+.. +-.+..+++++++++|..+.+.
T Consensus 136 GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~-----------~~~~~~~~ikL~ir~LleVvqs-- 202 (249)
T KOG0183|consen 136 GFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEE-----------AIATEGETIKLAIRALLEVVQS-- 202 (249)
T ss_pred eeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccc-----------cccccccHHHHHHHHHHHHhhc--
Confidence 999999999999999999999999999999999999999999962 2478899999999999999985
Q ss_pred ccCCceEEEEEeCCC
Q 029724 164 YTGDKLEIVVLNKDG 178 (189)
Q Consensus 164 ~s~~~~~i~iit~~g 178 (189)
.++++|++|+++++
T Consensus 203 -~~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 203 -GGKNIEVAVMKRRK 216 (249)
T ss_pred -CCCeeEEEEEecCC
Confidence 46799999999987
No 37
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-32 Score=211.37 Aligned_cols=171 Identities=22% Similarity=0.381 Sum_probs=158.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhc--CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQ-HQHNKQMSCPAMGQLLSNTLYYKR--FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~-~~~g~~i~~~~la~~ls~~~y~~r--~~P~~v 78 (189)
|.|++-.-++++||++|+||+.+|+||..+|+|.+.+.+.....+.. +..|+.+.|+.++++|+++||.+| +.|++.
T Consensus 62 SYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwn 141 (256)
T KOG0185|consen 62 SYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWN 141 (256)
T ss_pred cchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhhhccCchhh
Confidence 45666666799999999999999999999999999999998777655 466799999999999999999988 899999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
.+||||+|.+|+|+|-.+|..|...+.+.+|+|.|.+.++++|++.|+++ .++++.+||.+++.+||+..
T Consensus 142 tlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k----------~~~~s~eeA~~li~~cMrVL 211 (256)
T KOG0185|consen 142 TLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKK----------GEDLSREEAEALIEKCMRVL 211 (256)
T ss_pred heeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhcc----------chhhHHHHHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999842 26899999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCeeEE
Q 029724 159 TERDIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~~~ 182 (189)
.+||+.+.++++|++|+++|+++.
T Consensus 212 ~YRD~ra~n~fqva~v~~eGv~i~ 235 (256)
T KOG0185|consen 212 YYRDARASNEFQVATVDEEGVTIS 235 (256)
T ss_pred hccccccccceEEEEEcccceEec
Confidence 999999999999999999998864
No 38
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=202.88 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=148.9
Q ss_pred cccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcceeeEEEEE
Q 029724 10 RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYYSFNVLGGL 85 (189)
Q Consensus 10 ~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~v~~ivaG~ 85 (189)
...+||++|+|+|+|+++|+++|+..|++.+|..+|.|.+.+|++||+++|+++++++.+.+. .||||||+|.+||
T Consensus 60 ~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGw 139 (249)
T KOG0178|consen 60 IPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGW 139 (249)
T ss_pred ccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeece
Confidence 367899999999999999999999999999999999999999999999999999999995332 6899999999999
Q ss_pred cCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhccccc
Q 029724 86 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYT 165 (189)
Q Consensus 86 D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s 165 (189)
|...+.+||..||||++..|++.++|..+..++++|+..|+. ..++++||+.+|++.|....+.+.++
T Consensus 140 d~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd------------d~~~~~eA~~laikvL~kt~d~~~lt 207 (249)
T KOG0178|consen 140 DDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD------------DENDLEEAKALAIKVLSKTLDSGSLT 207 (249)
T ss_pred ecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc------------ccccHHHHHHHHHHHHHhhcccCCCC
Confidence 987678999999999999999999999999999999999996 35679999999999999999999999
Q ss_pred CCceEEEEEeCCCeeE
Q 029724 166 GDKLEIVVLNKDGIHR 181 (189)
Q Consensus 166 ~~~~~i~iit~~g~~~ 181 (189)
...+||+.++++..+.
T Consensus 208 ~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 208 AEKLEIATITKDCNKT 223 (249)
T ss_pred hhheEEEEEEecCCce
Confidence 9999999999987654
No 39
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.3e-31 Score=201.96 Aligned_cols=168 Identities=18% Similarity=0.262 Sum_probs=155.6
Q ss_pred eeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc--CCCcceeeE
Q 029724 6 SILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR--FFPYYSFNV 81 (189)
Q Consensus 6 ~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r--~~P~~v~~i 81 (189)
.+.++++..+|+|+++++|+++|..+|++..++++|.++.++++.+|.+||++.||++++++. |+++ +||+||.++
T Consensus 60 Lld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~ 139 (246)
T KOG0182|consen 60 LLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAAT 139 (246)
T ss_pred ccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEE
Confidence 356678899999999999999999999999999999999999999999999999999999988 4555 999999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
+.|+|++.+|.||.+||+|.+..+++++.|.....+.++||++|++. .+++.+|++++++.||..++..
T Consensus 140 ~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~-----------~~~t~~e~ve~ai~al~~sl~~ 208 (246)
T KOG0182|consen 140 LIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKD-----------IDLTFEETVETAISALQSSLGI 208 (246)
T ss_pred EEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccC-----------ccchHHHHHHHHHHHHHHHHhc
Confidence 99999998899999999999999999999999999999999999973 3589999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEeec
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
|. ..+++||++++++..+++.+.
T Consensus 209 Df-k~se~EVgvv~~~~p~f~~Ls 231 (246)
T KOG0182|consen 209 DF-KSSELEVGVVTVDNPEFRILS 231 (246)
T ss_pred cc-CCcceEEEEEEcCCcceeecc
Confidence 96 456899999999998877764
No 40
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=203.03 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=148.4
Q ss_pred ecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcceeeEEEE
Q 029724 9 SRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYYSFNVLGG 84 (189)
Q Consensus 9 ~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~v~~ivaG 84 (189)
..+++|+++|.+||+|..||+.+|++.+++..|+.++.|...+++++++..|...++.+++++. .||||+++++||
T Consensus 59 ~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG 138 (233)
T KOG0181|consen 59 EESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAG 138 (233)
T ss_pred hhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEee
Confidence 3477999999999999999999999999999999999999999999999999999999996543 689999999999
Q ss_pred EcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccc
Q 029724 85 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 164 (189)
Q Consensus 85 ~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~ 164 (189)
||. ++|+||++||+|++..|+++|.|.+...+..+||+.|.. +|.+|+++..++..|++.++-. .
T Consensus 139 ~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~e-------------dleldd~ihtailtlkE~fege-~ 203 (233)
T KOG0181|consen 139 WDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNE-------------DLELDDAIHTAILTLKESFEGE-M 203 (233)
T ss_pred cCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHHHhcc-------------ccccchHHHHHHHHHHHHhccc-c
Confidence 995 569999999999999999999999999999999999985 9999999999999999999876 5
Q ss_pred cCCceEEEEEeCCCeeEEe
Q 029724 165 TGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 165 s~~~~~i~iit~~g~~~~~ 183 (189)
+.+++||+++..++.++.+
T Consensus 204 ~~~nieigv~~~~~F~~lt 222 (233)
T KOG0181|consen 204 TAKNIEIGVCGENGFRRLT 222 (233)
T ss_pred ccCceEEEEecCCceeecC
Confidence 7889999999988877543
No 41
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=197.33 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=146.2
Q ss_pred ecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c--CCCcceeeEEEE
Q 029724 9 SRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R--FFPYYSFNVLGG 84 (189)
Q Consensus 9 ~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r--~~P~~v~~ivaG 84 (189)
+.-++|||+|++|+++.++|+++|++.|.+++|.+|..+++.+++++++.-|...+.+-++.+ | .|||||.++++|
T Consensus 57 ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~g 136 (264)
T KOG0863|consen 57 SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAG 136 (264)
T ss_pred HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEe
Confidence 446799999999999999999999999999999999999999999999999999998888542 2 579999999999
Q ss_pred EcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcc-c
Q 029724 85 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD-I 163 (189)
Q Consensus 85 ~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d-~ 163 (189)
+|+.| |+||.++|+|.+.++...++|+.++.+.++||+++.+. ++++.||.+..+++||+..+..| .
T Consensus 137 YDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f-----------~~~~~eELI~~gi~Alr~tlp~de~ 204 (264)
T KOG0863|consen 137 YDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEF-----------EDSSPEELIKHGIMALRETLPEDED 204 (264)
T ss_pred ecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHHhhcCcccc
Confidence 99776 99999999999999999999999999999999998863 69999999999999999998744 7
Q ss_pred ccCCceEEEEEeCCCe
Q 029724 164 YTGDKLEIVVLNKDGI 179 (189)
Q Consensus 164 ~s~~~~~i~iit~~g~ 179 (189)
+++.+++|+|+.++..
T Consensus 205 lt~~nvsI~Ivgkd~p 220 (264)
T KOG0863|consen 205 LTGENVSIAIVGKDEP 220 (264)
T ss_pred cccceeEEEEEeCCCc
Confidence 8899999999999863
No 42
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=196.81 Aligned_cols=165 Identities=21% Similarity=0.367 Sum_probs=155.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|.-|+.++..||+.|.++|+|+.+|-++|...+.+.+..+...|+++.++.+.+-..-+++.+.+|.+.. -.++.+|
T Consensus 58 T~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG-~IgA~Li 136 (271)
T KOG0173|consen 58 TEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQG-HIGAALI 136 (271)
T ss_pred cCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcC-cccceeE
Confidence 678889999999999999999999999999999999999999999999999999999999999999976542 3799999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
+||+|++| |+||++-|.|+....+|++.|||+..++++||..|++ +|+.|||.+++.+|+...+..
T Consensus 137 iGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~-------------dlt~eea~~Lv~eAi~AGi~n 202 (271)
T KOG0173|consen 137 LGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP-------------DLTKEEAIKLVCEAIAAGIFN 202 (271)
T ss_pred EccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc-------------ccCHHHHHHHHHHHHHhhhcc
Confidence 99999887 9999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|..||+++++|||++.+++.
T Consensus 203 DLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 203 DLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred ccCCCCceeEEEEeCCCccc
Confidence 99999999999999877654
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=8e-28 Score=184.21 Aligned_cols=146 Identities=18% Similarity=0.245 Sum_probs=125.0
Q ss_pred CccceeeecccCeeEEecC-ceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcc-ee
Q 029724 2 STGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYY-SF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~-v~ 79 (189)
|+|++|++++.+||++|++ |++|++||..+|+|+|.++++.+++.|+++.++ .+++.+..+ ..++.+|+. +.
T Consensus 21 t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l-~~~~~~~~l~a~ 94 (171)
T cd01913 21 TLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDW-RTDRYLRRLEAM 94 (171)
T ss_pred EeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHH-HhccCcCceEEE
Confidence 7899999999999999999 999999999999999999999999999988773 455554444 333444665 66
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
++++++ ++||.+||.|.+.++ ++.++|||+.+++++||..|++ .+|+ +.+++++|++.
T Consensus 95 ~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~------------~~ms---~~~la~~Av~~ 154 (171)
T cd01913 95 LIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDH------------TDLS---AEEIARKALKI 154 (171)
T ss_pred EEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhcc------------CCCC---HHHHHHHHHHH
Confidence 666544 389999999999998 4999999999999999999995 1499 55999999999
Q ss_pred hHhcccccCCceEEEE
Q 029724 158 ATERDIYTGDKLEIVV 173 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~i 173 (189)
+.+||+.|++++.|..
T Consensus 155 A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 155 AADICIYTNHNITVEE 170 (171)
T ss_pred HHhhCcccCCCEEEEe
Confidence 9999999999998764
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.96 E-value=1.4e-27 Score=183.83 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=126.4
Q ss_pred CccceeeecccCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCccee
Q 029724 2 STGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~~P~~v~ 79 (189)
|.|.+|++++.+||++| ++|++|++||..+|+|.|.+.++.+++.|+. +. ++.+++.+..+ ...+ .+|+.+.
T Consensus 22 s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l-~~~~~~~~l~~~ 95 (172)
T PRK05456 22 TLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDW-RTDRYLRRLEAM 95 (172)
T ss_pred EeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHH-HhccCCCccEEE
Confidence 78999999999999999 9999999999999999999999999999983 22 46677655444 2223 3578899
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
+|++ |. |+||.+|+.|++.+. ++.++|+|+.+++++|++.|+ + +| ||++++++|++
T Consensus 96 ~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~-------------~m---eA~~la~kai~ 154 (172)
T PRK05456 96 LIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENT-------------DL---SAEEIAEKALK 154 (172)
T ss_pred EEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcC-------------CC---CHHHHHHHHHH
Confidence 9994 42 699999999999766 799999999999999999999 5 99 99999999999
Q ss_pred HhHhcccccCCceEEEE
Q 029724 157 SATERDIYTGDKLEIVV 173 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~i 173 (189)
.+.+||..++++++|-.
T Consensus 155 ~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 155 IAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHhCeeCCCcEEEEE
Confidence 99999999999998864
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.95 E-value=1.9e-27 Score=182.16 Aligned_cols=146 Identities=20% Similarity=0.251 Sum_probs=124.7
Q ss_pred CccceeeecccCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCc-cee
Q 029724 2 STGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPY-YSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~-~v~ 79 (189)
|+|++|++++.+||++| ++|++|++||..+|+|+|.++++.+++.|+++. .+.+++.++++ ..++.+|+ .+.
T Consensus 21 s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~-~~~~~~~~l~a~ 94 (171)
T TIGR03692 21 TLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDW-RTDRYLRRLEAM 94 (171)
T ss_pred EeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHH-hhcccccccEEE
Confidence 78999999999999999 599999999999999999999999999998743 36677776663 22333343 377
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
++++|| ++||.+||.|.+.++ ++.++|||+.+++++||..|++ ++|+ |++++.++++.
T Consensus 95 ~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~------------~~~s---a~~la~~Av~~ 154 (171)
T TIGR03692 95 LIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN------------TDLS---AEEIAREALKI 154 (171)
T ss_pred EEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc------------CCCC---HHHHHHHHHHH
Confidence 777644 399999999999996 6999999999999999999964 4787 99999999999
Q ss_pred hHhcccccCCceEEEE
Q 029724 158 ATERDIYTGDKLEIVV 173 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~i 173 (189)
|.+||..||+++.|..
T Consensus 155 A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 155 AADICIYTNHNITIEE 170 (171)
T ss_pred HHhhCccCCCCEEEEe
Confidence 9999999999998864
No 46
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=179.72 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=135.1
Q ss_pred ecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh----cCCCcceeeEEEE
Q 029724 9 SRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK----RFFPYYSFNVLGG 84 (189)
Q Consensus 9 ~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~----r~~P~~v~~ivaG 84 (189)
.....|||.|++||+|+.+|+.+|.+.+..++|.++..|+-+++.++|...++.+++++.+-. ..||||++.++++
T Consensus 61 p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~ 140 (254)
T KOG0184|consen 61 PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGS 140 (254)
T ss_pred cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999532 2689999999999
Q ss_pred EcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccc
Q 029724 85 LDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIY 164 (189)
Q Consensus 85 ~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~ 164 (189)
||.+ +|+||.+||+|....++.+|+|.|.+.+.+-||++--. +|+.+|+++.+.+.+..+.+..-.
T Consensus 141 yd~~-g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~-------------~mt~~e~VkeaakIiY~~HDe~Kd 206 (254)
T KOG0184|consen 141 YDDE-GPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKID-------------EMTCKELVKEAAKIIYKVHDENKD 206 (254)
T ss_pred EeCC-CceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccc-------------cccHHHHHHHHHheeEeecccccC
Confidence 9955 59999999999999999999999999999999997553 899999999999999766643211
Q ss_pred cCCceEEEEEeC
Q 029724 165 TGDKLEIVVLNK 176 (189)
Q Consensus 165 s~~~~~i~iit~ 176 (189)
-.-.+|+.++..
T Consensus 207 K~feiEm~wvg~ 218 (254)
T KOG0184|consen 207 KEFEIEMGWVGE 218 (254)
T ss_pred cceEEEEEEEEe
Confidence 122577887764
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=8.1e-25 Score=164.62 Aligned_cols=141 Identities=24% Similarity=0.307 Sum_probs=132.2
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCcceee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-FFPYYSFN 80 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~~P~~v~~ 80 (189)
+.|..+......|+++++++++++++|..+|++.+.+.++.+++.|++.++.++++..+++.+++.++.++ ++|+++++
T Consensus 21 ~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 100 (164)
T cd01901 21 SSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNL 100 (164)
T ss_pred CccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCcceEE
Confidence 45566667789999999999999999999999999999999999999999999999999999999998876 48999999
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeee-CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
|+||+|+ ++|+||.+||+|.+.+. +++++|.++..+.++|++.|++ +|+.+|+++++.+||.
T Consensus 101 iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 101 IVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKP-------------DMTLEEAVELALKALK 163 (164)
T ss_pred EEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHh
Confidence 9999997 67999999999999999 9999999999999999999985 8999999999999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-12 Score=97.16 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=114.5
Q ss_pred CccceeeecccCeeEEecC-ceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceee
Q 029724 2 STGYSILSRDYSKIIKLAD-KCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFN 80 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~-~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~ 80 (189)
|.|+.++..+..|+.+|.. +++.|++|.++|+.+|.+++..+++.|.-+. .-..-++++-+..-.|-+ -+.+-+
T Consensus 25 tlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L--~raavelaKdwr~Dk~lr---~LEAml 99 (178)
T COG5405 25 TLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDL--FRAAVELAKDWRTDKYLR---KLEAML 99 (178)
T ss_pred eecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcH--HHHHHHHHHhhhhhhHHH---HHhhhe
Confidence 7899999998888888865 9999999999999999999999998875111 112333444444333333 377878
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
+|+ |++ .++-+...|.+.+. +..++|||..++++..+.+++. ++++ |.+++.++|+.+
T Consensus 100 lVa--d~~---~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~------------~~ls---A~eIa~~sl~iA 159 (178)
T COG5405 100 LVA--DKT---HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN------------TELS---AREIAEKSLKIA 159 (178)
T ss_pred eEe--CCC---cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc------------cCCC---HHHHHHHHHhhh
Confidence 886 654 57888888998753 4999999999999999999985 5776 557889999888
Q ss_pred HhcccccCCceEEEEEe
Q 029724 159 TERDIYTGDKLEIVVLN 175 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit 175 (189)
.+-+..++.+++|..+.
T Consensus 160 ~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 160 GDICIYTNHNIVVEELR 176 (178)
T ss_pred heEEEecCCcEEEEEee
Confidence 88777777777777654
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7e-05 Score=58.46 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=115.7
Q ss_pred ccCeeEEe---cCc-eEEEecCChHHHHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHH---Hhh-c------CCC
Q 029724 11 DYSKIIKL---ADK-CVMASSGFQADVKALQKLLAARHLIYQHQH-NKQMSCPAMGQLLSNTL---YYK-R------FFP 75 (189)
Q Consensus 11 ~~~Ki~~I---~~~-i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~-g~~i~~~~la~~ls~~~---y~~-r------~~P 75 (189)
+++|+|-. +++ +++..+|..|-.|.+++.+....+...-.. -...+.-+.+..+.... +.+ + .--
T Consensus 30 tfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~d 109 (255)
T COG3484 30 TFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGID 109 (255)
T ss_pred HHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcc
Confidence 34555443 244 567889999999999999988876332221 12334445555555554 221 1 224
Q ss_pred cceeeEEEEEcCCCceEEEEEcCCCCeee----eCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 029724 76 YYSFNVLGGLDNEGKGCVYTYDAVGSYER----VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 151 (189)
Q Consensus 76 ~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~----~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~ 151 (189)
|.|++|+||-=..+.|.||.|=|.|++.+ .+|.-+|... +-.++|++.+.- +++++|+.+.+
T Consensus 110 fn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPildR~i~~-------------~~pLeea~kca 175 (255)
T COG3484 110 FNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILDRTITY-------------DTPLEEAAKCA 175 (255)
T ss_pred eeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhhhhhhc-------------cCCHHHHhhhe
Confidence 78999999976555689999999999974 3688899774 558999999885 99999999999
Q ss_pred HHHHHHhHhcccccCCceEEEEEeCCCee
Q 029724 152 KTCFASATERDIYTGDKLEIVVLNKDGIH 180 (189)
Q Consensus 152 ~~~l~~~~~~d~~s~~~~~i~iit~~g~~ 180 (189)
+-++...+..+...|-.+++-++.++...
T Consensus 176 LvS~DSTlkSNiSVGlPldLl~~e~ds~~ 204 (255)
T COG3484 176 LVSFDSTLKSNISVGLPLDLLVYEADSFS 204 (255)
T ss_pred EEecchhhhccccccCCceeEEEecccee
Confidence 99999999888888889999999998754
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=86.68 E-value=2.9 Score=32.73 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=41.6
Q ss_pred hhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCC
Q 029724 115 TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 177 (189)
Q Consensus 115 ~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~ 177 (189)
+.+...|.++|++ .|+++++.++..++|+.+...-+..+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~-------------k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKP-------------KMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 5667788888874 9999999999999999998777777778888877753
No 51
>PRK09732 hypothetical protein; Provisional
Probab=80.28 E-value=8.8 Score=28.33 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeEEee
Q 029724 140 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYM 184 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~~~~ 184 (189)
+.||++.|.+++..++..+.+. +..+.|+|++..|......
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~~ 45 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLALS 45 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEEE
Confidence 4799999999999999888874 5689999999999765443
No 52
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=77.50 E-value=12 Score=27.88 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeE
Q 029724 140 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~ 181 (189)
+.+++++|.+++..++..+.+. ++.+.|.|++..|-..
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~ 43 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLV 43 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEE
Confidence 6899999999999999877753 7899999999998543
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=72.42 E-value=6.5 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=37.0
Q ss_pred EEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHH
Q 029724 94 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDL 150 (189)
Q Consensus 94 y~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~ 150 (189)
..+|-+|-....+|-..|-|+..+-+-+-..|-+ +++.|||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvk-------------gkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVK-------------GKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHc-------------cccHHHHHhc
Confidence 3467799999999999999999999888888875 8888887643
No 54
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.70 E-value=20 Score=29.29 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=69.9
Q ss_pred HhhcCCCCCHHHHHHHHHHHHH----h-hc--CCCcceeeEEEEEcCCC-----ceEEEEE-------cCCCCeeeeCeE
Q 029724 48 QHQHNKQMSCPAMGQLLSNTLY----Y-KR--FFPYYSFNVLGGLDNEG-----KGCVYTY-------DAVGSYERVGYS 108 (189)
Q Consensus 48 ~~~~g~~i~~~~la~~ls~~~y----~-~r--~~P~~v~~ivaG~D~~g-----~p~Ly~i-------D~~G~~~~~~~~ 108 (189)
++..|.--+-++|+++...+-- + .| .+-..-+.++|-+..-+ .-++|.. +..|+-. ...
T Consensus 37 kLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~v--ts~ 114 (293)
T COG4079 37 KLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEV--TST 114 (293)
T ss_pred HhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCee--Eee
Confidence 3446777788889988776541 1 12 33344455555554321 1345543 2222221 122
Q ss_pred EEcC-------Ch----hhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCC
Q 029724 109 SQGS-------GS----TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKD 177 (189)
Q Consensus 109 a~G~-------g~----~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~ 177 (189)
..|. |. +.+..+|.+.|.+ .++++++.+++.++|..+...-+..+..+++..+++.
T Consensus 115 ~~g~g~aiIv~Gnk~~Ke~aneflk~~l~~-------------k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 115 SQGKGSAIIVFGNKFTKEVANEFLKDNLTK-------------KSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred ecCCCceEEEECcHHHHHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 3333 33 3455777777774 8999999999999999998655666778888877753
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=60.28 E-value=21 Score=25.87 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeEE
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~~ 182 (189)
.+|.++|.+++..+.+.+.++. .++.|+|++..|...-
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g----~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERG----LPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT-------EEEEEETTS-EEE
T ss_pred CcCHHHHHHHHHHHHHHHHHhC----CCeEEEEEECCCCEEE
Confidence 5889999999999999988753 4588999999985543
No 56
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=46.92 E-value=41 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCHHHH
Q 029724 33 VKALQKLLAARHLIYQHQHNK-QMSCPAM 60 (189)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~g~-~i~~~~l 60 (189)
+..+++.+..+++.|++++++ +++.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456788899999999999887 6666554
No 57
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=41.50 E-value=1.2e+02 Score=23.00 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCeeeeCeEEEc-CChhhhHHHHHhhcCCC--CCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhHhcc
Q 029724 91 GCVYTYDAVGSYERVGYSSQG-SGSTLIMPFLDNQLKSP--SPLLLPAQ-----DAVTPLSEAEAVDLVKTCFASATERD 162 (189)
Q Consensus 91 p~Ly~iD~~G~~~~~~~~a~G-~g~~~~~~~Le~~~~~~--~~~~~~~~-----~~~~~ms~~ea~~~~~~~l~~~~~~d 162 (189)
-.+..+.|-|+.........| ..++.+..++++.++.. .+..-|+. -+..+.|++.|.+.|.+-|...+..+
T Consensus 72 ~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~~ 151 (158)
T PRK02260 72 VEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISVN 151 (158)
T ss_pred ceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhcccC
Confidence 467888999999988888888 77888888888766542 01111111 12347899999999999997766543
No 58
>PRK02487 hypothetical protein; Provisional
Probab=40.72 E-value=1.1e+02 Score=23.02 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 140 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
+.++.++|.+++..+.+.+.++ +.++.|.|+. .|.
T Consensus 21 ~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~ 55 (163)
T PRK02487 21 PHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQ 55 (163)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCc
Confidence 6899999999999999888754 4578899985 553
No 59
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=40.18 E-value=32 Score=28.70 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=47.4
Q ss_pred EEEcC-CCceEEEEEcCCCCeeeeCeEEEcCC-hhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 83 GGLDN-EGKGCVYTYDAVGSYERVGYSSQGSG-STLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 83 aG~D~-~g~p~Ly~iD~~G~~~~~~~~a~G~g-~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
-|.|+ +|.+-....-..|-+... ..|.. -..-.+-|-+.|.. .++|+|+|++|+..=.....+
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~------------e~ItLE~AL~LLsLPR~iG~h 142 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKP------------ETITLEKALKLLSLPRVIGKH 142 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCCh------------hhCcHHHHHHHHcCchhhCCC
Confidence 37886 477777788888888764 44555 55556667777776 589999999887654433332
Q ss_pred cccccCCceEE
Q 029724 161 RDIYTGDKLEI 171 (189)
Q Consensus 161 ~d~~s~~~~~i 171 (189)
..++..|..
T Consensus 143 --p~sge~I~a 151 (298)
T COG1754 143 --PDSGEEISA 151 (298)
T ss_pred --CCCCcEEEe
Confidence 234554443
No 60
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=38.82 E-value=85 Score=21.14 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCee
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~ 180 (189)
.+-.+|++.+|..|++...+ -.+-|+++|.+...++--
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~--~L~lNGv~V~v~~~~~~i 70 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQD--HLSLNGVEVQVERTQKGI 70 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcc--eEEEcCeEEEEEEcCCeE
Confidence 34568999999999987654 467788999999876643
No 61
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=38.53 E-value=80 Score=19.42 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHhHhcc
Q 029724 141 PLSEAEAVDLVKTCFASATERD 162 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d 162 (189)
+||.|+|.++.++.++..+-+|
T Consensus 21 ~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 21 KLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999877665
No 62
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=38.40 E-value=57 Score=20.84 Aligned_cols=30 Identities=3% Similarity=0.032 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 029724 37 QKLLAARHLIYQHQHNKQMSCPAMGQLLSN 66 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~g~~i~~~~la~~ls~ 66 (189)
.+++.+........+|+.++.+.+|..+.-
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 345555566667788999999999987753
No 63
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=38.05 E-value=65 Score=26.56 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCCcceeeE--EEEEcCCCceEEEEEcCCCCeeee---CeEEEcCChhhhHHHHH
Q 029724 73 FFPYYSFNV--LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTLIMPFLD 122 (189)
Q Consensus 73 ~~P~~v~~i--vaG~D~~g~p~Ly~iD~~G~~~~~---~~~a~G~g~~~~~~~Le 122 (189)
+.| .+.+| +||-| -.+..+|..|.+... +-||.|+|+ ++..+.+
T Consensus 94 ~~p-~~~tIiDIGGQD----~K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~ 142 (262)
T TIGR02261 94 LNP-EARAVLDIGALH----GRAIRMDERGKVEAYKMTSQCASGSGQ-FLENIAR 142 (262)
T ss_pred HCC-CCCEEEEeCCCc----eEEEEEcCCCcEeeEEecCcccccccH-HHHHHHH
Confidence 345 34444 46665 357888999999753 488999997 4444444
No 64
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=37.18 E-value=72 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeEEeec
Q 029724 146 EAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 146 ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
|++..-++.|...+..|+.....+++.|||=+|.-+.+.+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 5778888888888888988888999999999875545443
No 65
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.30 E-value=76 Score=29.92 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=46.4
Q ss_pred ecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeEEEEEcCCCceEEEEEcCCCCeee
Q 029724 26 SSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER 104 (189)
Q Consensus 26 ~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~ 104 (189)
-+|.++-+-.|++.+- ....|+.|.+.+|.++.+-+.+..-..-|-|..+++.+=-+| |-||+.|.-|--.-
T Consensus 192 eAGRAaAc~sLcRIfc------SKksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~ln~-p~LFccdLkGId~l 263 (1215)
T KOG3652|consen 192 EAGRAAACASLCRIFC------SKKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFLNG-PNLFCCDLKGIDSL 263 (1215)
T ss_pred hhhHHHHHHHHHHhhh------cccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeeecC-CceeeecCCchhHh
Confidence 3555555555554332 234689999999999998777543222355555666554455 89999999986543
No 66
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.33 E-value=91 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCCcceeeE--EEEEcCCCceEEEEEcCCCCeeee---CeEEEcCChhhhHHHHHh
Q 029724 73 FFPYYSFNV--LGGLDNEGKGCVYTYDAVGSYERV---GYSSQGSGSTLIMPFLDN 123 (189)
Q Consensus 73 ~~P~~v~~i--vaG~D~~g~p~Ly~iD~~G~~~~~---~~~a~G~g~~~~~~~Le~ 123 (189)
+.|-.+.+| +||-| -.+..+|..|.+... +-||.|+|+ ++-.+.+.
T Consensus 121 ~~pp~v~tIIDIGGQD----sK~I~~d~~G~v~dF~MNdkCAAGTGr-FLE~~A~~ 171 (293)
T TIGR03192 121 MGGNAVRTILDMGGQD----CKAIHCDEKGKVTNFLMNDKCAAGTGR-GMEVISDL 171 (293)
T ss_pred hcCCCCCEEEEeCCCc----eEEEEEcCCCcEeeeeecCcccccccH-HHHHHHHH
Confidence 444344444 56766 357778999998653 488999997 44444443
No 67
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.24 E-value=30 Score=20.37 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=21.0
Q ss_pred EcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 029724 110 QGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKT 153 (189)
Q Consensus 110 ~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~ 153 (189)
-|.....+...+++.... ++++.++.++.+++
T Consensus 13 LGy~~~e~~~av~~~~~~------------~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEK------------PGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHS------------TTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcC------------CCCCHHHHHHHHHh
Confidence 477777788888876632 48888887776654
No 68
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.63 E-value=1.1e+02 Score=18.97 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=27.0
Q ss_pred hhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhccc
Q 029724 115 TLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDI 163 (189)
Q Consensus 115 ~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~ 163 (189)
+.+-.-+.++..+ +||--||+.++.+.|+.-...|.
T Consensus 14 Q~AVE~Iq~lMae-------------GmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 14 QKAVERIQELMAE-------------GMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HHHHHHHHHHHHc-------------cccchhHHHHHHHHHHHHhcccc
Confidence 3444555666664 99999999999999998776653
No 69
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=29.30 E-value=83 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=34.1
Q ss_pred EEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 108 SSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 108 ~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
-.+|.|..++-.++-.+.+ +++.+||++.+..++..++++
T Consensus 203 ~~~GaGDaf~a~~~~~l~~--------------g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 203 NNIGAGCTFASSIASQLVK--------------GKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCCChHHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 3589999998888888765 799999999999999888865
No 70
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=28.30 E-value=1.1e+02 Score=27.09 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred EEEEcCCCceEEEEEcCCCCeee--e-CeEEEcCChhhhHHHHHh
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYER--V-GYSSQGSGSTLIMPFLDN 123 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~--~-~~~a~G~g~~~~~~~Le~ 123 (189)
+||-| -.+..+|..|.+.. . +-||.|+|+ ++..+.+.
T Consensus 274 IGGQD----sK~I~ld~~G~V~dF~MNDKCAAGTGr-FLE~mA~~ 313 (432)
T TIGR02259 274 IGGQD----TKGIQIDDHGIVENFQMNDRCAAGCGR-YLGYIADE 313 (432)
T ss_pred eCCCc----eEEEEEcCCCcEeeeeecCcccccchH-HHHHHHHH
Confidence 46655 35788899998874 3 488999997 44444443
No 71
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=27.37 E-value=1.6e+02 Score=22.57 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhc------CCCc----ceeeEEEEEcCCCceEEEEEcCCCCe
Q 029724 60 MGQLLSNTLYYKR------FFPY----YSFNVLGGLDNEGKGCVYTYDAVGSY 102 (189)
Q Consensus 60 la~~ls~~~y~~r------~~P~----~v~~ivaG~D~~g~p~Ly~iD~~G~~ 102 (189)
-+..++++|.++- ..|- +=..||.|+|.++ -.|...||-+..
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg-~~i~~~DP~~gP 148 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDG-DSIHVHDPEQGP 148 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCC-CeEEecCcccCC
Confidence 4566667775432 2342 1346778999877 578888987654
No 72
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=27.20 E-value=3e+02 Score=22.50 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=40.8
Q ss_pred CCCeeee---CeEEEcCChhhhHHHHHh----hcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccccCCceEE
Q 029724 99 VGSYERV---GYSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEI 171 (189)
Q Consensus 99 ~G~~~~~---~~~a~G~g~~~~~~~Le~----~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i 171 (189)
.|.+.+. -..++|.|..+++..+-. ..+. .+++++|.+.+++-+.... +...-+
T Consensus 165 aG~yAd~~~~a~s~TG~GE~iir~~~a~~v~~~~~~-------------g~~~~~A~~~~i~~~~~~~------~~~~G~ 225 (248)
T cd04512 165 AGFYADNEAGAASTTGHGEAIIRTVLARRVVELMEQ-------------GMAAQAAAETAVEELGSLK------GGQGGV 225 (248)
T ss_pred ceeeecCCcEEEEeeecHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHhhc------CCeEEE
Confidence 3445433 367799999988866553 2332 7899999888877765431 223457
Q ss_pred EEEeCCCee
Q 029724 172 VVLNKDGIH 180 (189)
Q Consensus 172 ~iit~~g~~ 180 (189)
-.++++|..
T Consensus 226 Ia~d~~G~~ 234 (248)
T cd04512 226 IAVDSKGEF 234 (248)
T ss_pred EEEeCCCCE
Confidence 777888753
No 73
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=26.09 E-value=3e+02 Score=22.77 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=38.7
Q ss_pred eEEEcCChhhhHHHHHh----hcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCee
Q 029724 107 YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180 (189)
Q Consensus 107 ~~a~G~g~~~~~~~Le~----~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~ 180 (189)
..++|.|..++...+-. +.+. +++++||.+.+++-+..... ..+...-+-.++++|..
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~-------------G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQ-------------GMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 56899999888765542 2332 79999999988877754332 12334567777887743
No 74
>PRK07105 pyridoxamine kinase; Validated
Probab=25.99 E-value=1.1e+02 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=34.4
Q ss_pred eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 107 YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 107 ~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
.-.+|.|..++-+++-.+.+ +++.++|++.+..++..++.+
T Consensus 215 ~~~~GaGD~f~aa~~~~l~~--------------g~~l~~av~~A~~~~~~~i~~ 255 (284)
T PRK07105 215 AHYPGTGDIFTSVITGSLLQ--------------GDSLPIALDRAVQFIEKGIRA 255 (284)
T ss_pred CCcCChhHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 34589999999999988765 899999999999988877764
No 75
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=25.43 E-value=63 Score=24.59 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=48.5
Q ss_pred CCcceeeEEE-EEcCC-----CceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHH
Q 029724 74 FPYYSFNVLG-GLDNE-----GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA 147 (189)
Q Consensus 74 ~P~~v~~iva-G~D~~-----g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea 147 (189)
.|+..++|+- |=+.+ -+-.+..-=|+|.+.-.-..--|.|.+...+++.-..+ -.+-++|
T Consensus 58 TPWfmnLV~LPg~~q~w~~~~~G~k~~~~lP~G~~~F~~~~~~~~G~y~sCSLfSPm~~--------------f~~~~~A 123 (159)
T PRK10465 58 TPWMLSAVILPGPDQLWPRRKVGEKLGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLDP--------------SLSAEQG 123 (159)
T ss_pred chhhHhheeccCcccccccCCCcceEEEecCCceEEEEeecCCCCcceeEeeccCCccc--------------ccCHHHH
Confidence 4666676642 32211 01245555688888765555567787777777665433 6899999
Q ss_pred HHHHHHHHHHhHh
Q 029724 148 VDLVKTCFASATE 160 (189)
Q Consensus 148 ~~~~~~~l~~~~~ 160 (189)
+.+|..|++.++.
T Consensus 124 ~~~A~a~l~~lls 136 (159)
T PRK10465 124 VRLADDCARMLLS 136 (159)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 76
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.30 E-value=64 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHH
Q 029724 141 PLSEAEAVDLVK 152 (189)
Q Consensus 141 ~ms~~ea~~~~~ 152 (189)
++|.|||++..+
T Consensus 22 ~LtpEDAvEaLi 33 (35)
T PF08383_consen 22 GLTPEDAVEALI 33 (35)
T ss_pred CCCHHHHHHHHh
Confidence 689999998765
No 77
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=25.28 E-value=1e+02 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=32.8
Q ss_pred EcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 110 QGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 110 ~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
+|+|-.++-.++-.+.+ +.+.++|++.+..++..++.+
T Consensus 219 ~GaGD~f~A~~l~~l~~--------------g~~~~~al~~A~~~v~~~l~~ 256 (286)
T TIGR00687 219 VGTGDLIAALLLATLLH--------------GNSLKEALEKTVSAVYHVLVT 256 (286)
T ss_pred CChHHHHHHHHHHHHhc--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999998765 789999999999997777654
No 78
>PRK12412 pyridoxal kinase; Reviewed
Probab=25.16 E-value=1e+02 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=33.4
Q ss_pred EEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 109 SQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 109 a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
.+|.|..++-.++-.+.+ +++.+||++.+...+..++.+
T Consensus 208 t~GaGD~f~aa~aa~l~~--------------g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 208 THGAGCTYSAAITAELAK--------------GKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CCchHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 369999998888887665 899999999999999888765
No 79
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.71 E-value=4.3e+02 Score=22.30 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=56.5
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhcCCCcceeeEEEEEcCCC------------c--eEEEEEcCCCCeeee----CeEEEc
Q 029724 50 QHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEG------------K--GCVYTYDAVGSYERV----GYSSQG 111 (189)
Q Consensus 50 ~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~ivaG~D~~g------------~--p~Ly~iD~~G~~~~~----~~~a~G 111 (189)
|++.+..++.--+-.+..+......+ +..+|+|+...| . -+++-+||.|+..-. ++-.-|
T Consensus 144 Qf~NpaN~~aH~~tT~~EI~~~~~g~--~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~G 221 (300)
T COG0031 144 QFENPANPEAHYETTGPEIWQQTDGK--VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEG 221 (300)
T ss_pred hcCCCccHHHHHhhhHHHHHHHhCCC--CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCC
Confidence 66777777766655666665443222 788899986432 1 489999999987643 444555
Q ss_pred CChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029724 112 SGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 155 (189)
Q Consensus 112 ~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l 155 (189)
-|..++-..++.. .-+..-..+.+||+..+++..
T Consensus 222 IG~~~ip~~~~~~----------~iD~v~~V~d~~A~~~~r~La 255 (300)
T COG0031 222 IGAGFVPENLDLD----------LIDEVIRVSDEEAIATARRLA 255 (300)
T ss_pred CCCCcCCcccccc----------cCceEEEECHHHHHHHHHHHH
Confidence 5555543222210 111223578889988887765
No 80
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.04 E-value=1.4e+02 Score=18.93 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHH
Q 029724 44 HLIYQHQHNKQMSCPAMGQLLS 65 (189)
Q Consensus 44 ~~~~~~~~g~~i~~~~la~~ls 65 (189)
+..|...+|.++++++++..+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3445566799999999988664
No 81
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=24.00 E-value=1.2e+02 Score=23.84 Aligned_cols=40 Identities=33% Similarity=0.314 Sum_probs=33.5
Q ss_pred eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 107 YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 107 ~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
.-.+|.|..++-.++-.+.+ +++.++|++.+...+..+++
T Consensus 201 ~~~~GaGD~f~a~l~a~l~~--------------g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 201 KNTHGTGCTLSSAIAANLAK--------------GLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCCCChHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHHHHH
Confidence 34479999998888887765 89999999999999988775
No 82
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=23.91 E-value=1.1e+02 Score=18.21 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=25.1
Q ss_pred EEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcC
Q 029724 94 YTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 126 (189)
Q Consensus 94 y~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 126 (189)
|.|+|.|.+...---..|+....+...||+...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 678899999877666778888777777776554
No 83
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=78 Score=22.34 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=30.2
Q ss_pred eeEEecCceEEEecCChHHHHHHHHHHHHH---HHHHHhhcC
Q 029724 14 KIIKLADKCVMASSGFQADVKALQKLLAAR---HLIYQHQHN 52 (189)
Q Consensus 14 Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~---~~~~~~~~g 52 (189)
-+++|-+..++.+.|..+|+-.+.++++.. +..|+.-.|
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHYKG 50 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHYKG 50 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEeecC
Confidence 478999999999999999999988888764 445554333
No 84
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=22.95 E-value=1.3e+02 Score=23.92 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=34.6
Q ss_pred eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 107 YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 107 ~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
.-.+|.|..++-+++-.+.+ +++.++|++.+...+..+++.
T Consensus 211 ~~~~GaGD~f~a~~~~~l~~--------------g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 211 AYFNGTGDLFAALLLARLLK--------------GKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred CCcCChHHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 44689999999999988765 899999999999998887753
No 85
>COG3363 Archaeal IMP cyclohydrolase [Nucleotide transport and metabolism]
Probab=22.85 E-value=3.6e+02 Score=20.86 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHhHhc-------ccccCCceEEEEEeCCCeeEEeeccC
Q 029724 141 PLSEAEAVDLVKTCFASATER-------DIYTGDKLEIVVLNKDGIHREYMELR 187 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~-------d~~s~~~~~i~iit~~g~~~~~~~~~ 187 (189)
++.+.||+-.++.+|..-.+. -++.++..-++++..+++..+.++.|
T Consensus 86 G~ppRdAl~~vl~aMDYEkDeynTPRIa~ild~~t~~~G~Va~d~v~vr~v~~k 139 (200)
T COG3363 86 GVPPRDALVSVLLAMDYEKDEYNTPRIAAILDGETAYLGIVAADEVYVRVVKPK 139 (200)
T ss_pred CCChHHHHHHHHHhhhccccccCCcceEEEEcCCeEEEEEEeccceEEEEeccC
Confidence 788899999999988654321 12456778899999999988888764
No 86
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=22.30 E-value=1.3e+02 Score=19.99 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCee
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIH 180 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~ 180 (189)
.+|.+||.+.+++.|...... +.=-+++++.+|..
T Consensus 34 ~ls~eea~~~a~~~l~~~r~~-----~~gY~fi~d~~g~~ 68 (95)
T PF08269_consen 34 KLSEEEAQQQAREALRALRYG-----GDGYFFIYDMDGVV 68 (95)
T ss_dssp -----TTHHHHHHHHHH--SB-----TTB--EEE-TTSBE
T ss_pred CccHHHHHHHHHHHHhccccC-----CCCeEEEEeCCCeE
Confidence 699999999999999776542 12347888888865
No 87
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=22.08 E-value=1e+02 Score=17.80 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHHhH
Q 029724 141 PLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~ 159 (189)
+=|.+||++.+.+++...+
T Consensus 28 G~t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 28 GDTLEEALENAKEALELWL 46 (48)
T ss_dssp ESSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3466777777777775543
No 88
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=22.00 E-value=3.7e+02 Score=22.20 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.4
Q ss_pred eEEEcCChhhhHHHHHh----hcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 107 YSSQGSGSTLIMPFLDN----QLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 107 ~~a~G~g~~~~~~~Le~----~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
..++|.|..++...+-. ..+. +++++||.+.+++-+..... ...-+-.++++|.
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~-------------g~s~~eA~~~~i~~~~~~~~------g~gG~Iavd~~G~ 236 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQ-------------GGSAQEAADKAIEYMTERVK------GTGGAIVLDSSGE 236 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHcC------CceEEEEEeCCCC
Confidence 67899999888865543 3332 78999999988877654331 1233555666663
No 89
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=21.46 E-value=1.2e+02 Score=18.45 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeC
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNK 176 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~ 176 (189)
.-|.+||++.+.+-|.. +-+.+++-|+.+
T Consensus 4 gkt~eeAi~~A~~~l~~-------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV-------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC-------ChHHEEEEEEEc
Confidence 45889999988887742 234688888886
No 90
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=21.33 E-value=2.3e+02 Score=20.10 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 029724 29 FQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNT 67 (189)
Q Consensus 29 ~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~ 67 (189)
++.|--.+++.+|. |..+++..++++.|++.+...
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 44555556776665 444568889999999987653
No 91
>PRK12616 pyridoxal kinase; Reviewed
Probab=21.15 E-value=1.3e+02 Score=24.35 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=32.9
Q ss_pred EEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 109 SQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 109 a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
.+|.|..++-.++-.+.+ ++++++|++.+...+..++.+
T Consensus 211 t~GaGD~fsaalaa~l~~--------------g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 211 THGAGCTFSAAVTAELAK--------------GSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCcHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 379999998888887665 789999999998888887765
No 92
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=21.15 E-value=1.6e+02 Score=23.30 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029724 91 GCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCF 155 (189)
Q Consensus 91 p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l 155 (189)
|.|-... ..+.-...+++|.=.+..+-+|.. ++++.+||.++++++|
T Consensus 183 P~LeI~~--~dV~a~H~AtvG~idee~LFYL~S----------------RGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 183 PELEIDE--DDVKASHGATVGQIDEEQLFYLMS----------------RGLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEE-S--SSEEEEEEEEEEES-HHHHHHHHC----------------TT--HHHHHHHHHHHH
T ss_pred EhHhccc--CCcEEEEeeEeecCCHHHHHHHHH----------------cCCCHHHHHHHHHhhC
Confidence 6655432 223334577899999999999996 3999999999999875
No 93
>PF13983 YsaB: YsaB-like lipoprotein
Probab=20.98 E-value=2.5e+02 Score=18.29 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=34.6
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhh---c-----CCCcceeeEEEEEcCCCceEEEEEcCCCCeee
Q 029724 48 QHQHNKQMSCPAMGQLLSNTLYYK---R-----FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER 104 (189)
Q Consensus 48 ~~~~g~~i~~~~la~~ls~~~y~~---r-----~~P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~ 104 (189)
+..-.+.+..+.|++.=+...|.- . +-.|.-|-=+-|+-...+.+++++|+.|-+.-
T Consensus 9 kvsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r~E~FvCSFD~dGqFLH 73 (77)
T PF13983_consen 9 KVSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTARKEGFVCSFDADGQFLH 73 (77)
T ss_pred ccCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeecccccccceEEeECCCCcEEE
Confidence 334445666677777666666631 1 22344444455655445679999999998764
No 94
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=20.04 E-value=1.5e+02 Score=23.66 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=33.7
Q ss_pred EEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 109 SQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 109 a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
.+|.|..+.-.++-.+.+ +++.+||++.+...+..++.+
T Consensus 202 ~~GaGD~f~aalaa~la~--------------g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 202 THGTGCTLSAAIAANLAK--------------GLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CCChHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 589999998888887665 899999999999999888865
Done!