Query 029724
Match_columns 189
No_of_seqs 118 out of 1144
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 2E-44 6.7E-49 285.5 23.8 184 2-189 30-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 2.1E-44 7.3E-49 287.2 23.8 188 2-189 30-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 2.4E-43 8.1E-48 277.8 23.5 175 2-189 29-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 9.1E-43 3.1E-47 274.3 23.6 174 2-189 29-204 (204)
5 3h4p_a Proteasome subunit beta 100.0 3.7E-42 1.3E-46 273.8 21.5 168 2-182 22-190 (219)
6 1j2q_H Proteasome beta subunit 100.0 9.9E-42 3.4E-46 268.0 22.8 166 2-181 21-187 (202)
7 1iru_H 20S proteasome; cell cy 100.0 2.7E-41 9.3E-46 266.0 22.8 171 2-186 21-191 (205)
8 1ryp_K 20S proteasome; multica 100.0 4.5E-41 1.5E-45 263.3 22.1 169 2-183 22-193 (198)
9 1yar_H Proteasome beta subunit 100.0 7.1E-41 2.4E-45 266.0 22.5 165 2-181 29-194 (217)
10 1ryp_L 20S proteasome; multica 100.0 9.4E-41 3.2E-45 264.3 22.8 168 2-182 21-188 (212)
11 1iru_L 20S proteasome; cell cy 100.0 1.1E-40 3.7E-45 262.4 23.0 166 2-181 21-186 (204)
12 1ryp_N 20S proteasome; multica 100.0 1.1E-40 3.8E-45 267.5 20.7 173 2-182 29-209 (233)
13 1ryp_H 20S proteasome; multica 100.0 2.9E-40 9.8E-45 260.2 22.7 168 2-184 30-197 (205)
14 1iru_N 20S proteasome; cell cy 100.0 1.7E-40 5.7E-45 264.0 21.3 170 2-183 29-201 (219)
15 3nzj_K Proteasome component PR 100.0 2.2E-40 7.7E-45 272.9 22.6 168 2-182 96-263 (287)
16 1iru_K 20S proteasome; cell cy 100.0 2E-40 6.9E-45 260.3 21.1 169 2-183 22-192 (201)
17 3unf_H Proteasome subunit beta 100.0 3.9E-40 1.3E-44 264.5 22.8 167 2-183 21-187 (234)
18 1ryp_A 20S proteasome; multica 100.0 3.2E-40 1.1E-44 266.3 21.1 171 3-180 51-225 (243)
19 1ryp_I 20S proteasome; multica 100.0 1.2E-39 4.2E-44 259.7 23.0 166 2-182 21-187 (222)
20 3unf_N Proteasome subunit beta 100.0 1.4E-39 4.6E-44 255.1 22.0 168 2-185 21-189 (199)
21 1iru_A 20S proteasome; cell cy 100.0 1.6E-39 5.5E-44 262.6 22.3 171 3-185 57-231 (246)
22 1g0u_M Proteasome component PR 100.0 1.2E-39 4.1E-44 266.3 20.6 173 2-182 62-242 (266)
23 3nzj_H Proteasome component PU 100.0 5.4E-39 1.8E-43 261.6 23.0 162 2-178 50-211 (261)
24 1iru_I 20S proteasome; cell cy 100.0 6.2E-39 2.1E-43 257.6 21.7 166 2-182 21-186 (234)
25 1ryp_C 20S proteasome; multica 100.0 7.6E-39 2.6E-43 258.3 21.7 166 2-180 52-223 (244)
26 1iru_C 20S proteasome; cell cy 100.0 7.2E-39 2.5E-43 261.0 21.5 165 2-179 52-221 (261)
27 1iru_B 20S proteasome; cell cy 100.0 9.6E-39 3.3E-43 256.1 20.5 163 4-181 53-219 (233)
28 1q5q_H Proteasome beta-type su 100.0 2.1E-38 7.3E-43 254.6 22.5 167 2-181 21-204 (235)
29 1yar_A Proteasome alpha subuni 100.0 2.1E-38 7E-43 254.2 21.6 162 2-179 55-220 (233)
30 1ryp_E 20S proteasome; multica 100.0 2.7E-38 9.3E-43 254.8 20.4 163 2-179 47-219 (242)
31 1ryp_D 20S proteasome; multica 100.0 8.7E-38 3E-42 251.8 22.5 161 2-178 49-217 (241)
32 1iru_G 20S proteasome; cell cy 100.0 5.1E-38 1.7E-42 255.1 20.3 162 2-177 54-219 (254)
33 1iru_E 20S proteasome; cell cy 100.0 6.5E-38 2.2E-42 252.5 19.4 162 2-179 55-225 (241)
34 1ryp_G 20S proteasome; multica 100.0 1.6E-37 5.6E-42 250.7 21.6 166 2-182 51-226 (244)
35 1q5r_H Proteasome beta-type su 100.0 1.7E-37 5.9E-42 256.4 22.1 167 2-181 86-269 (294)
36 3h4p_A Proteasome subunit alph 100.0 9.1E-38 3.1E-42 254.8 18.8 167 2-185 59-229 (264)
37 3nzj_F Proteasome component C1 100.0 2.3E-37 7.7E-42 255.1 20.6 160 2-176 55-221 (288)
38 3mi0_A Proteasome subunit alph 100.0 3.4E-37 1.2E-41 249.2 21.2 156 9-178 47-217 (248)
39 1iru_D 20S proteasome; cell cy 100.0 2.1E-37 7.2E-42 250.6 20.0 160 2-178 50-215 (248)
40 2jay_A Proteasome; hydrolase; 100.0 3E-37 1E-41 254.8 18.8 167 2-181 78-261 (291)
41 1iru_F 20S proteasome; cell cy 100.0 6.6E-37 2.2E-41 249.7 19.8 157 10-178 58-219 (263)
42 1ryp_F 20S proteasome; multica 100.0 8.6E-37 2.9E-41 244.8 20.1 156 10-178 57-219 (233)
43 1ryp_B 20S proteasome; multica 100.0 9.5E-37 3.2E-41 247.0 20.2 162 3-178 52-218 (250)
44 1j2p_A Alpha-ring, proteasome 100.0 3.4E-36 1.2E-40 243.2 22.1 162 2-180 55-222 (246)
45 1q5q_A Proteasome alpha-type s 100.0 3.1E-36 1E-40 245.2 19.4 156 9-178 47-215 (259)
46 1g3k_A ATP-dependent protease 100.0 6.7E-31 2.3E-35 201.9 16.8 147 2-175 21-173 (174)
47 1m4y_A ATP-dependent protease 100.0 7.5E-31 2.6E-35 201.0 15.4 146 2-174 21-171 (171)
48 2z3b_A ATP-dependent protease 100.0 2E-30 6.8E-35 200.4 15.8 150 2-175 26-180 (180)
49 3fpw_A HBPS, extracellular HAE 63.5 24 0.00082 26.6 6.8 40 140-183 63-102 (192)
50 2a2l_A Unknown; structural gen 43.4 41 0.0014 23.9 5.0 39 140-182 10-48 (145)
51 1ojh_A NBLA; degradation prote 37.7 43 0.0015 20.6 3.7 22 141-162 24-45 (65)
52 2q8v_A NBLA protein; phycobili 34.7 53 0.0018 20.1 3.7 22 141-162 29-50 (63)
53 4asv_A Small glutamine-rich te 34.2 63 0.0021 21.3 4.2 23 141-163 38-62 (92)
54 2lxb_A Small glutamine-rich te 32.2 78 0.0027 20.0 4.3 23 141-163 26-50 (74)
55 3fau_A NEDD4-binding protein 2 28.1 78 0.0027 19.7 4.0 39 141-179 7-45 (82)
56 4gof_A Small glutamine-rich te 24.9 64 0.0022 18.9 2.7 23 141-163 21-45 (52)
57 2d9i_A NEDD4-binding protein 2 23.9 1.1E+02 0.0039 19.6 4.3 39 141-179 15-53 (96)
58 1yx3_A Hypothetical protein DS 22.2 1.5E+02 0.0052 20.8 4.7 36 29-68 62-97 (132)
59 3cs5_A Phycobilisome degradati 20.9 44 0.0015 20.2 1.5 23 140-162 26-48 (59)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2e-44 Score=285.52 Aligned_cols=184 Identities=48% Similarity=0.818 Sum_probs=170.9
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||+.+|++.|+++++.+++.|+++++++++++.+|+++++++|++|++||++++|
T Consensus 30 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~l 109 (213)
T 1iru_M 30 SEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNI 109 (213)
T ss_dssp EETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++|+|+||.+||+|++.+++++|+|+|+++++++||+.|+++++. ..+.++|+.+||++++++||..+.+|
T Consensus 110 vaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~----~~~~~~~s~eea~~l~~~al~~~~~~ 185 (213)
T 1iru_M 110 IGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ----NVEHVPLSLDRAMRLVKDVFISAAER 185 (213)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS----SCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccc----ccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999888899999999999999999999999999999999995531110 11225999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
|..++++++|++|+++|++++.+++|+|
T Consensus 186 d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 186 DVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp BTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 9999999999999999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=2.1e-44 Score=287.22 Aligned_cols=188 Identities=43% Similarity=0.706 Sum_probs=172.0
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHhhcCCCcceee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYKRFFPYYSFN 80 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g-~~i~~~~la~~ls~~~y~~r~~P~~v~~ 80 (189)
|.|..+.+++.+||++|++|++|++||+.+|++.|+++++.+++.|+++++ ++++++.+|+++++++|++|++||++++
T Consensus 30 ~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ 109 (222)
T 1ryp_M 30 ITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHT 109 (222)
T ss_dssp EETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEE
T ss_pred ccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEE
Confidence 568889999999999999999999999999999999999999999999999 9999999999999999999889999999
Q ss_pred EEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHH
Q 029724 81 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLL----PAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 81 ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~----~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
||||||++|+|+||.+||+|++.+++++|+|+|+++++++||+.|+++++... .+..+.++|+.+||++++++||.
T Consensus 110 ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~ 189 (222)
T 1ryp_M 110 IIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFT 189 (222)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999653211100 00113369999999999999999
Q ss_pred HhHhcccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 157 SATERDIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
.+.+||+.++++++|++|+++|++++.+++|+|
T Consensus 190 ~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 190 SATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp HHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred HHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 999999999999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.4e-43 Score=277.77 Aligned_cols=175 Identities=21% Similarity=0.388 Sum_probs=167.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|+++++++|++|..||++++|
T Consensus 29 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~l 108 (205)
T 1iru_J 29 GIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPV 108 (205)
T ss_dssp EETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCE
T ss_pred ccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999999988789999999
Q ss_pred EEEEcC-CCceEEEEEcCCCCeeee-CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 82 LGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 82 vaG~D~-~g~p~Ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
|||||+ +++|+||.+||+|++.++ +|+++|+|+++++++||+.|++ +|+.+||++++++||..+.
T Consensus 109 vaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~ 175 (205)
T 1iru_J 109 IAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP-------------NMDPDHLFETISQAMLNAV 175 (205)
T ss_dssp EEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHG
T ss_pred EEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCC-------------CCCHHHHHHHHHHHHHHHH
Confidence 999996 567999999999999765 6799999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
+||..++++++|++|+++|++++.+++|+|
T Consensus 176 ~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 176 DRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp GGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred HhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 999999999999999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=9.1e-43 Score=274.26 Aligned_cols=174 Identities=20% Similarity=0.452 Sum_probs=166.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|+ |++|+++|..+|++.|+++++.+++.|+++++++++++.+|+++++++|++|..||++++|
T Consensus 29 ~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~l 107 (204)
T 1ryp_J 29 GSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPV 107 (204)
T ss_dssp EETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEE
T ss_pred ccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 568888999999999999 9999999999999999999999999999999999999999999999999988779999999
Q ss_pred EEEEcC-CCceEEEEEcCCCCeeee-CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 82 LGGLDN-EGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 82 vaG~D~-~g~p~Ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
|||||+ +++|+||.+||+|++.++ +++++|+|+++++++||+.|++ +|+.+||++++++||..+.
T Consensus 108 vaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~ 174 (204)
T 1ryp_J 108 VAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEP-------------NLEPEDLFETISQALLNAA 174 (204)
T ss_dssp EEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCC-------------CcCHHHHHHHHHHHHHHHH
Confidence 999997 567999999999999665 6899999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeEEeeccCCC
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREYMELRKD 189 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~~~~~~~ 189 (189)
+||..++++++|++|+++|++++.+++|+|
T Consensus 175 ~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 175 DRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp TTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred HhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 999989999999999999999999999998
No 5
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.7e-42 Score=273.82 Aligned_cols=168 Identities=27% Similarity=0.468 Sum_probs=161.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|.++.+++.+||++|++|++|++||+.+|++.|+++++.+++.|+++++++++++.+|+++++++|++|++||+|++|
T Consensus 22 ~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~P~~v~~l 101 (219)
T 3h4p_a 22 SLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQII 101 (219)
T ss_dssp EETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTTTTTCCCCCE
T ss_pred ccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeC-eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
|||||++++|+||.+||+|++.+++ ++++|+|+++++++||+.|++ +|+.+||++++++||..+.+
T Consensus 102 vaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~ 168 (219)
T 3h4p_a 102 IGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDR-------------DMSVEEGIKLALNALKSAME 168 (219)
T ss_dssp EEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCT-------------TCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 9999986779999999999999998 999999999999999999995 99999999999999999999
Q ss_pred cccccCCceEEEEEeCCCeeEE
Q 029724 161 RDIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 161 ~d~~s~~~~~i~iit~~g~~~~ 182 (189)
||..++++++|++|+++|+++.
T Consensus 169 rd~~sg~~i~v~vi~~~g~~~l 190 (219)
T 3h4p_a 169 RDTFSGNGISLAVITKDGVKIF 190 (219)
T ss_dssp SCSSCCSCCCEEEEETTEEEEC
T ss_pred hcCCCCCcEEEEEEeCCCeEEc
Confidence 9999999999999999986653
No 6
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=9.9e-42 Score=267.96 Aligned_cols=166 Identities=27% Similarity=0.454 Sum_probs=159.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|+++++++|++|+|||++++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r~rp~~~~~l 100 (202)
T 1j2q_H 21 TMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLL 100 (202)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhCCCCceEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeC-eEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVG-YSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
|||||+ ++|+||.+||+|++.+++ ++++|+|+++++++||+.|++ +|+.+||++++++||..+.+
T Consensus 101 vaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~ 166 (202)
T 1j2q_H 101 IGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTP-------------EIGVDEAVELAVRAIYSAMK 166 (202)
T ss_dssp EEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCC-------------CcCHHHHHHHHHHHHHHHHh
Confidence 999997 459999999999999999 999999999999999999995 99999999999999999999
Q ss_pred cccccCCceEEEEEeCCCeeE
Q 029724 161 RDIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 161 ~d~~s~~~~~i~iit~~g~~~ 181 (189)
||..++++++|++|+++|+++
T Consensus 167 ~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 167 RDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp TCTTSCSCEEEEEECSSCEEE
T ss_pred cCCCCCCcEEEEEEeCCCeEE
Confidence 999899999999999998654
No 7
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.7e-41 Score=266.00 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=163.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|+.+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+++++++++|.+|. ||++++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-p~~~~~l 99 (205)
T 1iru_H 21 TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGII 99 (205)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-TCCEEEE
T ss_pred ccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-CccEEEE
Confidence 568889999999999999999999999999999999999999999999999999999999999999998875 9999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 100 vaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~~ 166 (205)
T 1iru_H 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRE-------------GMTKEECLQFTANALALAMER 166 (205)
T ss_dssp EEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999986779999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEeecc
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYMEL 186 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~~~ 186 (189)
|..++++++|++|+++|.+++.++.
T Consensus 167 d~~s~~~i~v~vi~~~g~~~~~l~~ 191 (205)
T 1iru_H 167 DGSSGGVIRLAAIAESGVERQVLLG 191 (205)
T ss_dssp BTTCCSCEEEEEEETTEEEEEEECG
T ss_pred ccccCCcEEEEEEeCCCeEEEEeCh
Confidence 9999999999999999988777654
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.5e-41 Score=263.33 Aligned_cols=169 Identities=21% Similarity=0.358 Sum_probs=159.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-C-CCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-F-FPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~-~P~~v~ 79 (189)
|.|..+.+++.+||++|++|+++++||+.+|++.|+++++.+++.|+++++++++++.+|+++++++|.++ . +||+++
T Consensus 22 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~r~p~~v~ 101 (198)
T 1ryp_K 22 TRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVN 101 (198)
T ss_dssp EETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSSCCCEE
T ss_pred ccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCCceEE
Confidence 46888889999999999999999999999999999999999999999999999999999999999998763 3 499999
Q ss_pred eEEEEEcC-CCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 80 NVLGGLDN-EGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 80 ~ivaG~D~-~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
+||||||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|++ +||.+||++++++||..+
T Consensus 102 ~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~ 168 (198)
T 1ryp_K 102 VLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRP-------------DMTTEEGLDLLKLCVQEL 168 (198)
T ss_dssp EEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHH
Confidence 99999997 5679999999999999999999999999999999999995 999999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCeeEEe
Q 029724 159 TERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
.+||..++++++|++|+++|+++..
T Consensus 169 ~~~d~~s~~~i~v~vi~~~g~~~~~ 193 (198)
T 1ryp_K 169 EKRMPMDFKGVIVKIVDKDGIRQVD 193 (198)
T ss_dssp HHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred HHhCccCCCceEEEEEcCCCEEEec
Confidence 9999999999999999999976543
No 9
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.1e-41 Score=266.02 Aligned_cols=165 Identities=27% Similarity=0.460 Sum_probs=158.2
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|+++++|++||..+|++.++++++.+++.|+++++++++++.+|+++++++|++|+|||++++|
T Consensus 29 ~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~l 108 (217)
T 1yar_H 29 TMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLL 108 (217)
T ss_dssp EETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
||||| + +|+||.+||+|++.+++++|+|+|+++++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 109 vaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~r 173 (217)
T 1yar_H 109 VGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE-------------KMTVDEGVDLVIRAISAAKQR 173 (217)
T ss_dssp EEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhccc-------------CCCHHHHHHHHHHHHHHHHhc
Confidence 99999 5 49999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeC-CCeeE
Q 029724 162 DIYTGDKLEIVVLNK-DGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~-~g~~~ 181 (189)
|..++++++|++|++ +|+++
T Consensus 174 d~~s~~~i~v~vi~~~~g~~~ 194 (217)
T 1yar_H 174 DSASGGMIDVAVITRKDGYVQ 194 (217)
T ss_dssp CTTCCSCCEEEEEETTTEEEE
T ss_pred cCCCCCcEEEEEEECCCCEEE
Confidence 998999999999999 77554
No 10
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=9.4e-41 Score=264.25 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=160.8
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|.++.+++.+||++|++|++|++||..+|++.|.++++.+++.|+++++++++++.+++++++++|.+|..||++++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~p~~v~~l 100 (212)
T 1ryp_L 21 TAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTM 100 (212)
T ss_dssp EETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCBEEE
T ss_pred ccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCCceEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999988779999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||.+||++++++||..+.+|
T Consensus 101 vaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~~~~r 167 (212)
T 1ryp_L 101 ICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW-------------DLSVEDALYLGKRSILAAAHR 167 (212)
T ss_dssp EEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999976679999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|..++++++|++|+++|+++.
T Consensus 168 d~~s~~~i~v~vi~~~g~~~~ 188 (212)
T 1ryp_L 168 DAYSGGSVNLYHVTEDGWIYH 188 (212)
T ss_dssp BTTCCSEEEEEEEETTEEEEE
T ss_pred ccccCCceEEEEEcCCceEEE
Confidence 999999999999999986653
No 11
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.1e-40 Score=262.37 Aligned_cols=166 Identities=26% Similarity=0.331 Sum_probs=159.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|.++++.+++.|+++++++++++.+|+++++++|.+|.+||+|++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~~~~~v~~l 100 (204)
T 1iru_L 21 TAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTM 100 (204)
T ss_dssp EETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTTSCCCBEEE
T ss_pred ccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||+ ++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +||.+||++++++||..+.+|
T Consensus 101 vaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~~~~r 166 (204)
T 1iru_L 101 ICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY-------------DLEVEQAYDLARRAIYQATYR 166 (204)
T ss_dssp EEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 999997 459999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeE
Q 029724 162 DIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~ 181 (189)
|..++++++|++|+++|++.
T Consensus 167 d~~s~~~i~v~vi~~~g~~~ 186 (204)
T 1iru_L 167 DAYSGGAVNLYHVREDGWIR 186 (204)
T ss_dssp BTTCCSEEEEEEECSSCEEE
T ss_pred CccCCCceEEEEEeCCceEE
Confidence 99899999999999999664
No 12
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.1e-40 Score=267.48 Aligned_cols=173 Identities=16% Similarity=0.264 Sum_probs=160.8
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHh-----hcCCCCCHHHHHHHHHHHHHhhc--CC
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHNKQMSCPAMGQLLSNTLYYKR--FF 74 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~g~~i~~~~la~~ls~~~y~~r--~~ 74 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|.++++.+++.|++ +++++++++.+|+++++++|++| ++
T Consensus 29 ~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~ 108 (233)
T 1ryp_N 29 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMN 108 (233)
T ss_dssp EETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 468899999999999999999999999999999999999999999999 89999999999999999999987 78
Q ss_pred CcceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 029724 75 PYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 154 (189)
Q Consensus 75 P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~ 154 (189)
||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++++ .++|+.+||++++++|
T Consensus 109 P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~--------~~~ms~eea~~la~~a 180 (233)
T 1ryp_N 109 PLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESD--------IPKTTVQVAEEAIVNA 180 (233)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGG--------GGGCCHHHHHHHHHHH
T ss_pred CceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccc--------cCCCCHHHHHHHHHHH
Confidence 99999999999987679999999999999999999999999999999999983100 0189999999999999
Q ss_pred HHHhHhcccccCCceEEEEEeCC-CeeEE
Q 029724 155 FASATERDIYTGDKLEIVVLNKD-GIHRE 182 (189)
Q Consensus 155 l~~~~~~d~~s~~~~~i~iit~~-g~~~~ 182 (189)
|..+.+||..++++++|++|+++ |+++.
T Consensus 181 l~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 181 MRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred HHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 99999999999999999999999 87654
No 13
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.9e-40 Score=260.24 Aligned_cols=168 Identities=27% Similarity=0.403 Sum_probs=160.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|+.+.+++.+||++|++|++|++||..+|++.+.++++.+++.|++++++ ++++.+|+++++++|.+|.+ |++++|
T Consensus 30 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-~~~~~l 107 (205)
T 1ryp_H 30 TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-LTAGII 107 (205)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-CCEEEE
T ss_pred ccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-ceEEEE
Confidence 5688899999999999999999999999999999999999999999999999 99999999999999998865 999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 108 vaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~a~~~ 174 (205)
T 1ryp_H 108 VAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRE-------------NMSKEETVDFIKHSLSQAIKW 174 (205)
T ss_dssp EEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999986679999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEee
Q 029724 162 DIYTGDKLEIVVLNKDGIHREYM 184 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~~ 184 (189)
|..++++++|++|+++|++.+.+
T Consensus 175 d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 175 DGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp BTTCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCeEEEEEEcCCCEEEEEe
Confidence 99999999999999999887776
No 14
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.7e-40 Score=264.03 Aligned_cols=170 Identities=24% Similarity=0.344 Sum_probs=160.2
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHhhc--CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-QHNKQMSCPAMGQLLSNTLYYKR--FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~g~~i~~~~la~~ls~~~y~~r--~~P~~v 78 (189)
|.|..+.+++.+||++|++|++|+++|..+|++.|.++++.+++.|++ +++++++++.+|+++++++|++| ++||++
T Consensus 29 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v 108 (219)
T 1iru_N 29 SYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWN 108 (219)
T ss_dssp EETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred ccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcccCCCceE
Confidence 568899999999999999999999999999999999999999999998 89999999999999999999887 899999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
++||||||++ +|+||.+||+|++.+++++++|+|+++++++||+.|+++ ++|+.+||++++++||..+
T Consensus 109 ~~lvaG~D~~-gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~-----------~~mt~eea~~l~~~al~~~ 176 (219)
T 1iru_N 109 TMVIGGYADG-ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQ-----------PVLSQTEARDLVERCMRVL 176 (219)
T ss_dssp EEEEEEEETT-EEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSC-----------SCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECC-CCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCC-----------CCCCHHHHHHHHHHHHHHH
Confidence 9999999964 799999999999999999999999999999999999841 2899999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCeeEEe
Q 029724 159 TERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
.+||..++++++|++|+++|+++..
T Consensus 177 ~~~d~~sg~~i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 177 YYRDARSYNRFQTATVTEKGVEIEG 201 (219)
T ss_dssp HHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred HHhcCcCCCcEEEEEEcCCCEEEcC
Confidence 9999999999999999999966543
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.2e-40 Score=272.89 Aligned_cols=168 Identities=22% Similarity=0.279 Sum_probs=161.8
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++++|.+|.+||++++|
T Consensus 96 t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~l 175 (287)
T 3nzj_K 96 TAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTM 175 (287)
T ss_dssp EETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 176 vaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~-------------dms~eEAi~la~~aL~~a~~r 242 (287)
T 3nzj_K 176 ICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW-------------DLSVEDALYLGKRSILAAAHR 242 (287)
T ss_dssp EEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT-------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 9999977789999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|+.++++++|++|+++|+++.
T Consensus 243 D~~sg~~i~V~vItkdg~~~l 263 (287)
T 3nzj_K 243 DAYSGGSVNLYHVTEDGWIYH 263 (287)
T ss_dssp BTTCCSEEEEEEEETTEEEEE
T ss_pred CcCCCCceEEEEEeCCCEEEe
Confidence 999999999999999997654
No 16
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2e-40 Score=260.28 Aligned_cols=169 Identities=20% Similarity=0.368 Sum_probs=159.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-Hhhc-CCCccee
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL-YYKR-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~-y~~r-~~P~~v~ 79 (189)
|.|..+.+++.+||++|++|+++++||..+|++.++++++.+++.|+++++++++++.+++++++.+ |.+| .+||+++
T Consensus 22 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~~~~~p~~~~ 101 (201)
T 1iru_K 22 ASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVN 101 (201)
T ss_dssp EETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHTSSSCCCEE
T ss_pred ccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCccEE
Confidence 5688999999999999999999999999999999999999999999999999999999999999876 6544 4699999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..+.
T Consensus 102 ~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~~s~eea~~l~~~al~~a~ 168 (201)
T 1iru_K 102 LLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTP-------------TISRERAVELLRKCLEELQ 168 (201)
T ss_dssp EEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccC-------------CCCHHHHHHHHHHHHHHHH
Confidence 999999986779999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeEEe
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
+||..++++++|++|+++|+++..
T Consensus 169 ~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 169 KRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp HTBCBCCCCEEEEEEETTEEECCC
T ss_pred hhccccCCceEEEEEcCCCeEEee
Confidence 999999999999999999987654
No 17
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=3.9e-40 Score=264.53 Aligned_cols=167 Identities=18% Similarity=0.309 Sum_probs=158.6
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+|||+|++|++|++||..+|++.++++++.+++.|++++|++++++.+++++++++|.++ +||++++|
T Consensus 21 t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~p~~v~ll 99 (234)
T 3unf_H 21 TNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLV 99 (234)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred ccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcC-CCccEEEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999998764 69999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 100 vaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~~~~~ 165 (234)
T 3unf_H 100 VGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQP-------------NMTLEAAQELLVEAITAGILS 165 (234)
T ss_dssp EEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCC-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 9999975 59999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEEe
Q 029724 162 DIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~~ 183 (189)
|..++++++|++|+++|++...
T Consensus 166 D~~sg~~iev~vi~~dg~~~l~ 187 (234)
T 3unf_H 166 DLGSGGNVDACVITAGGAKLQR 187 (234)
T ss_dssp BTTCCSCEEEEEEESSCEEEEE
T ss_pred cCCCCCcEEEEEEECCCEEEeC
Confidence 9999999999999999977543
No 18
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.2e-40 Score=266.29 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=157.2
Q ss_pred ccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc--CCCcce
Q 029724 3 TGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR--FFPYYS 78 (189)
Q Consensus 3 ~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r--~~P~~v 78 (189)
.|.++.+++.+|||+|++|++|++||+.+|++.++++++.+++.|++.+|++++++.+|+++++++ |++| ++||+|
T Consensus 51 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v 130 (243)
T 1ryp_A 51 PDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGV 130 (243)
T ss_dssp CCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSC
T ss_pred CccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccce
Confidence 377888899999999999999999999999999999999999999999999999999999999999 7777 899999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
++||||||++++|+||.+||+|++.+++++++|+|++.++++||+.|++++++ ..++|+.+||++++++||..+
T Consensus 131 ~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~------~~~~ms~eea~~l~~~al~~~ 204 (243)
T 1ryp_A 131 ILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKID------HINEESWEKVVEFAITHMIDA 204 (243)
T ss_dssp EEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSS------SCCCSSHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccc------cccCCCHHHHHHHHHHHHHHH
Confidence 99999999767799999999999999999999999999999999999841100 012899999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCee
Q 029724 159 TERDIYTGDKLEIVVLNKDGIH 180 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~ 180 (189)
.+|| .++++++|++|+++|.+
T Consensus 205 ~~rd-~s~~~iev~vi~~~g~~ 225 (243)
T 1ryp_A 205 LGTE-FSKNDLEVGVATKDKFF 225 (243)
T ss_dssp HTCC-CCTTSEEEEEEETTEEE
T ss_pred hccc-CCCCcEEEEEEECCCeE
Confidence 9999 78999999999999843
No 19
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.2e-39 Score=259.71 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=158.0
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+++++++.+|+++ +||++++|
T Consensus 21 t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~l 99 (222)
T 1ryp_I 21 TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLI 99 (222)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred ccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcC-CCCCeeEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999998865 69999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 100 vaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~~~~~ 165 (222)
T 1ryp_I 100 VAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ-------------DLTKEEAIKLASDAIQAGIWN 165 (222)
T ss_dssp EEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCC-------------CcCHHHHHHHHHHHHHHHHhc
Confidence 9999975 59999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCC-eeEE
Q 029724 162 DIYTGDKLEIVVLNKDG-IHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g-~~~~ 182 (189)
|..++++++|++++++| ++..
T Consensus 166 d~~sg~~i~v~vi~~~g~~~~~ 187 (222)
T 1ryp_I 166 DLGSGSNVDVCVMEIGKDAEYL 187 (222)
T ss_dssp CTTCCSCEEEEEEETTSCEEEE
T ss_pred cccCCCcEEEEEEECCCCEEEE
Confidence 99899999999999999 7653
No 20
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.4e-39 Score=255.12 Aligned_cols=168 Identities=21% Similarity=0.315 Sum_probs=158.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|+.+.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.+++++++++|.+| +||++++|
T Consensus 21 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~p~~v~~l 99 (199)
T 3unf_N 21 SAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLI 99 (199)
T ss_dssp EETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHTT-TTCCCCEE
T ss_pred cCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC-CCceEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999876 59999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeee-CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHh
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATE 160 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~ 160 (189)
|||||++++|+||. |+|++..+ +++++|+|+++++++||+.|++ +|+.+||++++++||..+.+
T Consensus 100 vaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~ 164 (199)
T 3unf_N 100 VAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKP-------------GMTPEECRRFTTNAITLAMN 164 (199)
T ss_dssp EEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 99999877899999 99998765 4777899999999999999995 99999999999999999999
Q ss_pred cccccCCceEEEEEeCCCeeEEeec
Q 029724 161 RDIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 161 ~d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
||..++++++|++|+++|++++.++
T Consensus 165 ~d~~sg~~i~v~vi~~~g~~~~~l~ 189 (199)
T 3unf_N 165 RDGSSGGVIYLVTITAAGVDHRVIL 189 (199)
T ss_dssp HCTTCCSCEEEEEECSSCEEEEEEC
T ss_pred hccccCCCeEEEEEcCCCEEEEEcC
Confidence 9999999999999999998888775
No 21
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.6e-39 Score=262.64 Aligned_cols=171 Identities=16% Similarity=0.242 Sum_probs=159.0
Q ss_pred ccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc--CCCcce
Q 029724 3 TGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR--FFPYYS 78 (189)
Q Consensus 3 ~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r--~~P~~v 78 (189)
.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|+++++++ |++| +|||+|
T Consensus 57 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v 136 (246)
T 1iru_A 57 PDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGC 136 (246)
T ss_dssp CCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSE
T ss_pred CCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcce
Confidence 367888899999999999999999999999999999999999999999999999999999999986 6655 789999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 158 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~ 158 (189)
++||||||++++|+||.+||+|++.+++++++|+|++.++++||+.|+++ ++|+.+||++++++||..+
T Consensus 137 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~-----------~~ms~eea~~la~~al~~~ 205 (246)
T 1iru_A 137 CMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKK-----------FDWTFEQTVETAITCLSTV 205 (246)
T ss_dssp EEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSC-----------CCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhccc-----------CCCCHHHHHHHHHHHHHHH
Confidence 99999999867799999999999999999999999999999999999831 2899999999999999999
Q ss_pred HhcccccCCceEEEEEeCCCeeEEeec
Q 029724 159 TERDIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 159 ~~~d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
.+|| .++++++|++|+++|.+++.++
T Consensus 206 ~~rd-~sg~~i~v~vi~~~g~~~~~l~ 231 (246)
T 1iru_A 206 LSID-FKPSEIEVGVVTVENPKFRILT 231 (246)
T ss_dssp TTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred hccc-CCCCcEEEEEEECCCCeEEECC
Confidence 9999 8899999999999998666553
No 22
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.2e-39 Score=266.28 Aligned_cols=173 Identities=16% Similarity=0.264 Sum_probs=160.6
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHh-----hcCCCCCHHHHHHHHHHHHHhhc--CC
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQH-----QHNKQMSCPAMGQLLSNTLYYKR--FF 74 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~g~~i~~~~la~~ls~~~y~~r--~~ 74 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|++ .++++++++.+|+++++++|++| ++
T Consensus 62 t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~ 141 (266)
T 1g0u_M 62 SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMN 141 (266)
T ss_dssp EETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCC
Confidence 468899999999999999999999999999999999999999999998 89999999999999999999987 78
Q ss_pred CcceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 029724 75 PYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 154 (189)
Q Consensus 75 P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~ 154 (189)
||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++.+ .++|+.+||++++++|
T Consensus 142 P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~--------~~~ms~eeA~~la~~a 213 (266)
T 1g0u_M 142 PLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESD--------IPKTTVQVAEEAIVNA 213 (266)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGG--------GGGCCHHHHHHHHHHH
T ss_pred CceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhccccc--------CCCCCHHHHHHHHHHH
Confidence 99999999999987679999999999999999999999999999999999983100 0189999999999999
Q ss_pred HHHhHhcccccCCceEEEEEeCC-CeeEE
Q 029724 155 FASATERDIYTGDKLEIVVLNKD-GIHRE 182 (189)
Q Consensus 155 l~~~~~~d~~s~~~~~i~iit~~-g~~~~ 182 (189)
|..+.+||+.++++++|++|+++ |+++.
T Consensus 214 l~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 214 MRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp HHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred HHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence 99999999999999999999999 87654
No 23
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=5.4e-39 Score=261.57 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=155.6
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+||++|++|++|++||..+|++.++++++.+++.|++.++++++++.+++++++.+|+++ +||++++|
T Consensus 50 t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~~~gv~ll 128 (261)
T 3nzj_H 50 TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLI 128 (261)
T ss_dssp EETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred ccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhc-CcccEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999998764 59999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..+.+|
T Consensus 129 vaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eEA~~la~~al~~a~~r 194 (261)
T 3nzj_H 129 VAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ-------------DLTKEEAIKLASDAIQAGIWN 194 (261)
T ss_dssp EEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 9999975 49999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCC
Q 029724 162 DIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g 178 (189)
|..++++++|++|+++|
T Consensus 195 D~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 195 DLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp CTTCCSCEEEEEEETTS
T ss_pred CCCCCCcEEEEEEECCC
Confidence 99999999999999999
No 24
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=6.2e-39 Score=257.56 Aligned_cols=166 Identities=21% Similarity=0.330 Sum_probs=157.6
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCcceeeE
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNV 81 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r~~P~~v~~i 81 (189)
|.|..+.+++.+|||+|++|++|++||..+|++.+.++++.+++.|++++|++++++.+++++++.+|.++ +||++++|
T Consensus 21 t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-~~~~v~ll 99 (234)
T 1iru_I 21 TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR-GYIGAALV 99 (234)
T ss_dssp ESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT-TCSCEEEE
T ss_pred ccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-CCCceeEE
Confidence 57888899999999999999999999999999999999999999999999999999999999999998765 59999999
Q ss_pred EEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhc
Q 029724 82 LGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATER 161 (189)
Q Consensus 82 vaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~ 161 (189)
|||||++ +|+||.+||+|++.+++++++|+|++.++++||+.|++ +|+.+||++++++||..+.++
T Consensus 100 vaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la~~al~~a~~~ 165 (234)
T 1iru_I 100 LGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRP-------------DMEEEEAKNLVSEAIAAGIFN 165 (234)
T ss_dssp EEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCT-------------TCCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999975 49999999999999999999999999999999999995 999999999999999999999
Q ss_pred ccccCCceEEEEEeCCCeeEE
Q 029724 162 DIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 162 d~~s~~~~~i~iit~~g~~~~ 182 (189)
|..++++++|++|+++|++..
T Consensus 166 d~~sg~~i~v~vi~k~g~~~~ 186 (234)
T 1iru_I 166 DLGSGSNIDLCVISKNKLDFL 186 (234)
T ss_dssp CTTCCSCEEEEEEETTEEECC
T ss_pred cccCCCCEEEEEEECCcEEEE
Confidence 998999999999999997643
No 25
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=7.6e-39 Score=258.33 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=155.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh----cCCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK----RFFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~----r~~P~~ 77 (189)
|.|..+.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|++++++++.+ ++|||+
T Consensus 52 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~ 131 (244)
T 1ryp_C 52 TSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFG 131 (244)
T ss_dssp CCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCC
T ss_pred CCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceE
Confidence 6777777899999999999999999999999999999999999999999999999999999999999542 378999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~ 198 (244)
T 1ryp_C 132 VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-------------DMKVDDAIELALKTLSK 198 (244)
T ss_dssp EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhc-------------CCCHHHHHHHHHHHHHH
Confidence 99999999966779999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEEe--CCCee
Q 029724 158 ATERDIYTGDKLEIVVLN--KDGIH 180 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit--~~g~~ 180 (189)
+.+||..++++++|++|+ ++|..
T Consensus 199 ~~~rd~~sg~~i~v~vi~~~~~~~~ 223 (244)
T 1ryp_C 199 TTDSSALTYDRLEFATIRKGANDGE 223 (244)
T ss_dssp HCSSSSCCGGGEEEEEEECCSSSSS
T ss_pred HhccccCCCCcEEEEEEEeecCCCc
Confidence 999965679999999999 99864
No 26
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7.2e-39 Score=260.99 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=157.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~ 77 (189)
|.|..+.+++.+||++|++|++|++||+.+|++.|+++++.+++.|++.++++++++.+|+++++++|.++ +|||+
T Consensus 52 ~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~ 131 (261)
T 1iru_C 52 IHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG 131 (261)
T ss_dssp CCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCC
T ss_pred CCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcce
Confidence 67888888889999999999999999999999999999999999999999999999999999999998653 68999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVT-PLSEAEAVDLVKTCFA 156 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~-~ms~~ea~~~~~~~l~ 156 (189)
|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+ + +|+.+||++++++||.
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~-------------~~~ms~eeA~~la~~al~ 198 (261)
T 1iru_C 132 VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK-------------EGEMTLKSALALAIKVLN 198 (261)
T ss_dssp EEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC-------------TTCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc-------------cCCCCHHHHHHHHHHHHH
Confidence 9999999997677999999999999999999999999999999999998 5 8999999999999999
Q ss_pred HhHhcccccCCceEEEEEeCCCe
Q 029724 157 SATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
.+.++|..++++++|++|+++|.
T Consensus 199 ~~~~~d~~sg~~i~v~vi~~~~~ 221 (261)
T 1iru_C 199 KTMDVSKLSAEKVEIATLTRENG 221 (261)
T ss_dssp HSSSCTTCCSTTCEEEEEECCSS
T ss_pred HHHhccCCCCCcEEEEEEEcCCC
Confidence 99999999999999999999985
No 27
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=9.6e-39 Score=256.13 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=153.3
Q ss_pred cceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--hhc--CCCccee
Q 029724 4 GYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLY--YKR--FFPYYSF 79 (189)
Q Consensus 4 G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y--~~r--~~P~~v~ 79 (189)
|.++.+++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.++++++++++ +++ +|||+|+
T Consensus 53 ~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~ 132 (233)
T 1iru_B 53 SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVS 132 (233)
T ss_dssp CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEE
T ss_pred ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEE
Confidence 677888899999999999999999999999999999999999999999999999999999999994 443 7899999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT 159 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~ 159 (189)
+||||||. ++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..+.
T Consensus 133 ~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~ 198 (233)
T 1iru_B 133 LLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE-------------DLELEDAIHTAILTLKESF 198 (233)
T ss_dssp EEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHHHh
Confidence 99999994 459999999999999999999999999999999999995 9999999999999999999
Q ss_pred hcccccCCceEEEEEeCCCeeE
Q 029724 160 ERDIYTGDKLEIVVLNKDGIHR 181 (189)
Q Consensus 160 ~~d~~s~~~~~i~iit~~g~~~ 181 (189)
+|| .++++++|++|+++|+++
T Consensus 199 ~~d-~sg~~i~v~vi~~~g~~~ 219 (233)
T 1iru_B 199 EGQ-MTEDNIEVGICNEAGFRR 219 (233)
T ss_dssp CSC-CCSSSEEEEEEETTEEEE
T ss_pred hcc-CCCCCEEEEEEECCCEEE
Confidence 999 679999999999999554
No 28
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.1e-38 Score=254.56 Aligned_cols=167 Identities=21% Similarity=0.253 Sum_probs=156.2
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc---CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR---FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r---~~P~~v 78 (189)
|.|.++.+++.+||++|+++++|++||..+|++.|+++++.+++.|+++++++++++.+|+++++++|.++ ++||+|
T Consensus 21 ~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~rp~~v 100 (235)
T 1q5q_H 21 TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAV 100 (235)
T ss_dssp EETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHHTTTCCE
T ss_pred CcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhhhcccce
Confidence 46889999999999999999999999999999999999999999999999999999999999999998754 789999
Q ss_pred eeEEEEEcCCCc-----eEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 029724 79 FNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 151 (189)
Q Consensus 79 ~~ivaG~D~~g~-----p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~ 151 (189)
++||||||++++ |+||.+||+|++.++ +++++|+|+++++++||+.|++ +|+.+||++++
T Consensus 101 ~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eeA~~la 167 (235)
T 1q5q_H 101 VPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP-------------DSDEETALRAA 167 (235)
T ss_dssp EEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHH
T ss_pred EEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC-------------CCCHHHHHHHH
Confidence 999999998756 999999999999999 8999999999999999999985 99999999999
Q ss_pred HHHHHHhHhcccccCCc--e-----EEEEEeCCCeeE
Q 029724 152 KTCFASATERDIYTGDK--L-----EIVVLNKDGIHR 181 (189)
Q Consensus 152 ~~~l~~~~~~d~~s~~~--~-----~i~iit~~g~~~ 181 (189)
++||..+.++|..+++. + +|++|+++|+++
T Consensus 168 ~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 168 IESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp HHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred HHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 99999999999877652 2 999999998665
No 29
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.1e-38 Score=254.21 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=152.2
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~ 77 (189)
|.| ++.+++.+||++|++|++|++||..+|++.++++++.+++.|+++++++++++.+|+++++++|.++ .|||+
T Consensus 55 ~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~ 133 (233)
T 1yar_A 55 RSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYG 133 (233)
T ss_dssp CCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCC
T ss_pred Ccc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcce
Confidence 445 5778899999999999999999999999999999999999999999999999999999999998543 57999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||+ ++|+||.+||+|++.+++++++|+|++.++++||+.|++ +|+.+||++++++||..
T Consensus 134 v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~~s~eea~~la~~al~~ 199 (233)
T 1yar_A 134 VSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKE-------------NLPEKEAVTLGIKALKS 199 (233)
T ss_dssp EEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHH
Confidence 9999999997 459999999999999999999999999999999999985 99999999999999999
Q ss_pred hHhcccccCCceEEEEEeCCCe
Q 029724 158 ATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit~~g~ 179 (189)
+.++|. ++++++|++|+++|.
T Consensus 200 ~~~~d~-s~~~i~v~vi~~~~~ 220 (233)
T 1yar_A 200 SLEEGE-ELKAPEIASITVGNK 220 (233)
T ss_dssp TSCSSC-CCCCCEEEEEETTSC
T ss_pred HhhccC-CCCcEEEEEEECCCC
Confidence 999997 799999999999983
No 30
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.7e-38 Score=254.81 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=153.4
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc---------
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR--------- 72 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r--------- 72 (189)
|.|..+ +++.+||++|++|++|++||..+|++.++++++.+++.|++.+|++++++.+++++++++|.++
T Consensus 47 ~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l 125 (242)
T 1ryp_E 47 TSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERL 125 (242)
T ss_dssp SSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCC
T ss_pred CCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCccccc
Confidence 567777 8899999999999999999999999999999999999999999999999999999999987521
Q ss_pred -CCCcceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 029724 73 -FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 151 (189)
Q Consensus 73 -~~P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~ 151 (189)
.|||+|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++
T Consensus 126 ~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la 192 (242)
T 1ryp_E 126 MSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHS-------------SLTLKEAELLV 192 (242)
T ss_dssp BSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHH
T ss_pred ccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhcc-------------CCCHHHHHHHH
Confidence 5699999999999966779999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 152 KTCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 152 ~~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
++||..+.+| ..++++++|++|+++|.
T Consensus 193 ~~al~~~~~~-~~sg~~i~v~vi~~~~~ 219 (242)
T 1ryp_E 193 LKILKQVMEE-KLDENNAQLSCITKQDG 219 (242)
T ss_dssp HHHHHHHCSS-CCCTTSEEEEEEETTTE
T ss_pred HHHHHHHhhc-cCCCCcEEEEEEECCCC
Confidence 9999999999 57899999999999996
No 31
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=8.7e-38 Score=251.78 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=151.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~ 77 (189)
|.|..+.+++.+||++|++|++|++||+.+|++.|+++++.+++.|+++++++++++.+|+++++++|.++ +|||+
T Consensus 49 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~ 128 (241)
T 1ryp_D 49 TLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFG 128 (241)
T ss_dssp SSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCS
T ss_pred CccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcc
Confidence 67888888899999999999999999999999999999999999999999999999999999999998642 57999
Q ss_pred eeeEEEEEcCC-CceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhc---CCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 029724 78 SFNVLGGLDNE-GKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL---KSPSPLLLPAQDAVTPLSEAEAVDLVKT 153 (189)
Q Consensus 78 v~~ivaG~D~~-g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~---~~~~~~~~~~~~~~~~ms~~ea~~~~~~ 153 (189)
|++||||||++ ++|+||.+||+|++.+++++++|+|++.++++||+.| + ++|+.+||++++++
T Consensus 129 v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~-------------~~ms~eea~~l~~~ 195 (241)
T 1ryp_D 129 VSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE-------------PPATVEECVKLTVR 195 (241)
T ss_dssp EEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTS-------------CCCSHHHHHHHHHH
T ss_pred eeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhccc-------------CCCCHHHHHHHHHH
Confidence 99999999975 6799999999999999999999999999999999999 5 49999999999999
Q ss_pred HHHHhHhcccccCCceEEEEEeCCC
Q 029724 154 CFASATERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 154 ~l~~~~~~d~~s~~~~~i~iit~~g 178 (189)
||..+.+ .++++++|++|+++|
T Consensus 196 al~~~~~---~sg~~i~v~vi~~~~ 217 (241)
T 1ryp_D 196 SLLEVVQ---TGAKNIEITVVKPDS 217 (241)
T ss_dssp HHHHHHC---SCSTTEEEEEEETTT
T ss_pred HHHHHhc---CCCCcEEEEEEECCC
Confidence 9999986 689999999999997
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.1e-38 Score=255.05 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=152.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~ 77 (189)
|.|..+. ++.+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|+++++++|.++ +|||+
T Consensus 54 ~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~ 132 (254)
T 1iru_G 54 LSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFG 132 (254)
T ss_dssp SCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCS
T ss_pred CCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccce
Confidence 5677775 789999999999999999999999999999999999999999999999999999999997654 68999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||++++|+||.+||+|++.+++++++|+|++.++++||+.|++ +|+.+||++++++||..
T Consensus 133 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~ 199 (254)
T 1iru_G 133 CSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK-------------EMTCRDIVKEVAKIIYI 199 (254)
T ss_dssp EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGG-------------GCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHH
Confidence 99999999966779999999999999999999999999999999999874 99999999999999999
Q ss_pred hHhcccccCCceEEEEEeCC
Q 029724 158 ATERDIYTGDKLEIVVLNKD 177 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit~~ 177 (189)
+.++|..++++++|++|+++
T Consensus 200 ~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 200 VHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp HSCSSSSCCEEEEEEECBTT
T ss_pred HHhhccCCCCcEEEEEEEcC
Confidence 98888768889999999987
No 33
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=6.5e-38 Score=252.52 Aligned_cols=162 Identities=18% Similarity=0.203 Sum_probs=152.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--Hhhc-------
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL--YYKR------- 72 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~--y~~r------- 72 (189)
|.|..+ +++.+||++|++|++|++||..+|++.++++++.+++.|+++++++++++.+|+++++++ |+++
T Consensus 55 ~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~ 133 (241)
T 1iru_E 55 TSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAM 133 (241)
T ss_dssp CCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCB
T ss_pred CCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccc
Confidence 577777 889999999999999999999999999999999999999999999999999999999999 4333
Q ss_pred CCCcceeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 029724 73 FFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 152 (189)
Q Consensus 73 ~~P~~v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~ 152 (189)
.|||+|++|||||| +++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +|+.+||+++++
T Consensus 134 ~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~ 199 (241)
T 1iru_E 134 SRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHK-------------SMTLKEAIKSSL 199 (241)
T ss_dssp SSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHH
T ss_pred cccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHH
Confidence 57999999999999 5679999999999999999999999999999999999995 999999999999
Q ss_pred HHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 153 TCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 153 ~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
+||..+.+| ..++++++|++|+++|.
T Consensus 200 ~al~~~~~~-~~sg~~i~v~vi~~~~~ 225 (241)
T 1iru_E 200 IILKQVMEE-KLNATNIELATVQPGQN 225 (241)
T ss_dssp HHHHHHCSS-CCCTTSEEEEEECSSSC
T ss_pred HHHHHHhhc-cCCCCCEEEEEEECCCC
Confidence 999999999 67899999999999986
No 34
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.6e-37 Score=250.72 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=153.3
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c--CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R--FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r--~~P~~ 77 (189)
|.|..+.++ .+||++|++|++|++||..+|++.|+++++.+++.|+++++++++++.+|++++++++.+ + ++||+
T Consensus 51 ~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~ 129 (244)
T 1ryp_G 51 TSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG 129 (244)
T ss_dssp CCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCC
T ss_pred CCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCce
Confidence 567777665 499999999999999999999999999999999999999999999999999999999543 3 68999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhh---cCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 154 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~ 154 (189)
+++||||||+ ++|+||.+||+|++.+++++++|+|++.++++||+. |++ +||.+||++++++|
T Consensus 130 v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~-------------~ms~eea~~la~~a 195 (244)
T 1ryp_G 130 VSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE-------------GLSAREAVKQAAKI 195 (244)
T ss_dssp EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT-------------CCCHHHHHHHHHHH
T ss_pred EEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCC-------------CCCHHHHHHHHHHH
Confidence 9999999996 459999999999999999999999999999999997 874 89999999999999
Q ss_pred HHHhHhcccccCCceEEEEEeC---CCeeEE
Q 029724 155 FASATERDIYTGDKLEIVVLNK---DGIHRE 182 (189)
Q Consensus 155 l~~~~~~d~~s~~~~~i~iit~---~g~~~~ 182 (189)
|..+.++|..++++++|++|++ +|.++.
T Consensus 196 l~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 196 IYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp HHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred HHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 9999999998999999999998 777653
No 35
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.7e-37 Score=256.45 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=156.6
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc---CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR---FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r---~~P~~v 78 (189)
|.|+++.+++.+|||+|++|++|+++|..+|++.|+++++.+++.|++.++++++++.++++|++++|.++ ++||+|
T Consensus 86 t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~~rp~~v 165 (294)
T 1q5r_H 86 TQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAV 165 (294)
T ss_dssp EETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred ccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhhcCCcce
Confidence 46889999999999999999999999999999999999999999999999999999999999999998754 589999
Q ss_pred eeEEEEEcCCCc-----eEEEEEcCCCCeeee--CeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 029724 79 FNVLGGLDNEGK-----GCVYTYDAVGSYERV--GYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 151 (189)
Q Consensus 79 ~~ivaG~D~~g~-----p~Ly~iD~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~ 151 (189)
++||||||++++ |+||.+||+|++.++ +++++|+|+++++++||+.|++ +|+.+||++++
T Consensus 166 ~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~-------------~ms~eEAi~la 232 (294)
T 1q5r_H 166 VPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP-------------DSDEETALRAA 232 (294)
T ss_dssp EEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS-------------SCCHHHHHHHH
T ss_pred EEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccC-------------CCCHHHHHHHH
Confidence 999999998756 999999999999999 8999999999999999999985 99999999999
Q ss_pred HHHHHHhHhcccccCCc--e-----EEEEEeCCCeeE
Q 029724 152 KTCFASATERDIYTGDK--L-----EIVVLNKDGIHR 181 (189)
Q Consensus 152 ~~~l~~~~~~d~~s~~~--~-----~i~iit~~g~~~ 181 (189)
++||..+.++|..+++. + +|++|+++|+++
T Consensus 233 ~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 233 IESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp HHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred HHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 99999999999877653 5 999999999765
No 36
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.1e-38 Score=254.83 Aligned_cols=167 Identities=17% Similarity=0.315 Sum_probs=153.5
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c--CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R--FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r--~~P~~ 77 (189)
|.| ++.+++.+||++|++|++|++||+.+|++.|+++++.+++.|++.++++++++.+|++++++++.+ + +|||+
T Consensus 59 ~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~ 137 (264)
T 3h4p_A 59 TSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFG 137 (264)
T ss_dssp CST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCS
T ss_pred cCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCee
Confidence 444 577889999999999999999999999999999999999999999999999999999999999643 2 68999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||+ ++|+||.+||+|++.+++++|+|+|++.++++||+.|++ +|+.+||++++++||..
T Consensus 138 v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~ 203 (264)
T 3h4p_A 138 VSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRD-------------DITLDEGLELAITALTK 203 (264)
T ss_dssp EEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCT-------------TCCSHHHHHHHHHHHHH
T ss_pred EEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHHH
Confidence 9999999995 569999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEEeCCCeeEEeec
Q 029724 158 ATERDIYTGDKLEIVVLNKDGIHREYME 185 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit~~g~~~~~~~ 185 (189)
+.++ .++++++|++|++++..++.++
T Consensus 204 a~~~--~sg~~iev~vi~~~~~~~~~l~ 229 (264)
T 3h4p_A 204 ANED--IKPENVDVCIITVKDAQFKKIP 229 (264)
T ss_dssp HSSS--CCTTSEEEEEEETTTTEEEECC
T ss_pred HHhc--cCCCeEEEEEEEeCCCcEEECC
Confidence 9987 6899999999999876555553
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.3e-37 Score=255.09 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=149.9
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh----cCCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK----RFFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~----r~~P~~ 77 (189)
|.|..+.+ +.+|||+|++|++|++||+.+|++.|+++++.+++.|++.++++++++.+|+++++++|.+ ++|||+
T Consensus 55 t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~g 133 (288)
T 3nzj_F 55 TSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFG 133 (288)
T ss_dssp CCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCC
T ss_pred ccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCce
Confidence 56766665 6799999999999999999999999999999999999999999999999999999999654 378999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhh---cCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ---LKSPSPLLLPAQDAVTPLSEAEAVDLVKTC 154 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~---~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~ 154 (189)
|++||||||++| |+||.+||+|++.+++++++|+|++.++++||+. |++ +|+++||++++++|
T Consensus 134 v~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~-------------~ms~eEAv~la~~a 199 (288)
T 3nzj_F 134 VSTIFGGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPE-------------GLSAREAVKQAAKI 199 (288)
T ss_dssp EEEEEEEEETTE-EEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTT-------------CCCHHHHHHHHHHH
T ss_pred EEEEEEEEeCCC-CEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCC-------------CCCHHHHHHHHHHH
Confidence 999999999754 9999999999999999999999999999999999 774 99999999999999
Q ss_pred HHHhHhcccccCCceEEEEEeC
Q 029724 155 FASATERDIYTGDKLEIVVLNK 176 (189)
Q Consensus 155 l~~~~~~d~~s~~~~~i~iit~ 176 (189)
|..+.++|..++.+++|++|++
T Consensus 200 l~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 200 IYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp HHHHGGGGTTSEEEEEEEEEET
T ss_pred HHHHHhcccCCCCeEEEEEEEe
Confidence 9999999988888999999999
No 38
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.4e-37 Score=249.24 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=141.9
Q ss_pred ecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH---HhhcCCCcceeeEEEE
Q 029724 9 SRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTL---YYKRFFPYYSFNVLGG 84 (189)
Q Consensus 9 ~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g-~~i~~~~la~~ls~~~---y~~r~~P~~v~~ivaG 84 (189)
+++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ ++++++.|++++++.+ |++++|||+|++||||
T Consensus 47 ~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG 126 (248)
T 3mi0_A 47 SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAE 126 (248)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEE
T ss_pred CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEE
Confidence 46899999999999999999999999999999999999999999 8999999999999554 5567889999999999
Q ss_pred EcC---CCceEEEEEcCCCCeee-eCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH-
Q 029724 85 LDN---EGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT- 159 (189)
Q Consensus 85 ~D~---~g~p~Ly~iD~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~- 159 (189)
||+ +++|+||++||+|++.+ ++++|+|+|++.++++||++|++ +|+.+||++++++||..+.
T Consensus 127 ~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~-------------~mt~eeai~la~~aL~~~~~ 193 (248)
T 3mi0_A 127 VAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAE-------------NASLTDALRIAVAALRAGSA 193 (248)
T ss_dssp CCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHHC--
T ss_pred EcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 997 36799999999999995 99999999999999999999995 9999999999999999999
Q ss_pred ------hcccccCCceEEEEEeCCC
Q 029724 160 ------ERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 160 ------~~d~~s~~~~~i~iit~~g 178 (189)
+++ .++++++|++|+++|
T Consensus 194 ~~~~~~~~~-~~~~~iev~vv~~~g 217 (248)
T 3mi0_A 194 DTSGGDQPT-LGVASLEVAVLDANR 217 (248)
T ss_dssp -----------CCTTEEEEEEETTS
T ss_pred hcccCcccc-cCCCcEEEEEEECCC
Confidence 565 578999999999997
No 39
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.1e-37 Score=250.58 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=149.7
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc----CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR----FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r----~~P~~ 77 (189)
|.| ++.+++.+||++|++|++|++||+.+|++.|+++++.+++.|+++++++++++.+|++++++++.++ .|||+
T Consensus 50 ~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~ 128 (248)
T 1iru_D 50 VAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFG 128 (248)
T ss_dssp CCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCC
T ss_pred ccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccc
Confidence 456 4777899999999999999999999999999999999999999999999999999999999996532 57999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCF 155 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~m--s~~ea~~~~~~~l 155 (189)
|++||||||++++|+||.+||+|++.+++++++|+|++.++++||+.|++ +| +.+||++++++||
T Consensus 129 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~m~~s~eea~~la~~al 195 (248)
T 1iru_D 129 ISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD-------------EAIETDDLTIKLVIKAL 195 (248)
T ss_dssp EEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCS-------------STTCSHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcc-------------cccCCHHHHHHHHHHHH
Confidence 99999999966679999999999999999999999999999999999985 99 9999999999999
Q ss_pred HHhHhcccccCCceEEEEEeCCC
Q 029724 156 ASATERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 156 ~~~~~~d~~s~~~~~i~iit~~g 178 (189)
..+.+ .++++++|++|+++|
T Consensus 196 ~~~~~---~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 196 LEVVQ---SGGKNIELAVMRRDQ 215 (248)
T ss_dssp HTTSC---TTSTTCCEEEEESSS
T ss_pred HHHHc---CCCCcEEEEEEECCC
Confidence 98886 478999999999998
No 40
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3e-37 Score=254.79 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc---CCCcce
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR---FFPYYS 78 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r---~~P~~v 78 (189)
|.|+.|.+++.+|||+|++|++|++||..+|++.|+++++.+++.|++.++.+++++.+++++++++|.++ ++||+|
T Consensus 78 t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v 157 (291)
T 2jay_A 78 TQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLA 157 (291)
T ss_dssp -------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCC
T ss_pred cCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhhhhccccce
Confidence 57888999999999999999999999999999999999999999999999999999999999999998754 579999
Q ss_pred eeEEEEEcCCCc-----eEEEEEcCCCCee--eeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 029724 79 FNVLGGLDNEGK-----GCVYTYDAVGSYE--RVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLV 151 (189)
Q Consensus 79 ~~ivaG~D~~g~-----p~Ly~iD~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~ 151 (189)
++||||||++++ |+||.+||+|++. +++++++|+|+++++++||+.|++ +|+.+||++++
T Consensus 158 ~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eEAi~la 224 (291)
T 2jay_A 158 LPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ-------------VTDGDSGLRVA 224 (291)
T ss_dssp EEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG-------------CCSHHHHHHHH
T ss_pred eEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC-------------CCCHHHHHHHH
Confidence 999999998766 9999999999998 789999999999999999999995 99999999999
Q ss_pred HHHHHHhHhcccccCCc-------eEEEEEeCCCeeE
Q 029724 152 KTCFASATERDIYTGDK-------LEIVVLNKDGIHR 181 (189)
Q Consensus 152 ~~~l~~~~~~d~~s~~~-------~~i~iit~~g~~~ 181 (189)
++||..+.++|..+++. ++|++|+++|+++
T Consensus 225 ~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 225 VEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp HHHHHHC----------------CCEEEEEETTEEEE
T ss_pred HHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 99999999999877753 1699999998665
No 41
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=6.6e-37 Score=249.69 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=146.9
Q ss_pred cccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh--c--CCCcceeeEEEEE
Q 029724 10 RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYK--R--FFPYYSFNVLGGL 85 (189)
Q Consensus 10 ~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~--r--~~P~~v~~ivaG~ 85 (189)
++.+||++|++|++|++||+.+|++.|+++++.+++.|++.++++++++.+++++++++|.+ + .|||+|++|||||
T Consensus 58 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~ 137 (263)
T 1iru_F 58 AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY 137 (263)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999742 2 6899999999999
Q ss_pred cCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHhcc-cc
Q 029724 86 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERD-IY 164 (189)
Q Consensus 86 D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~~~d-~~ 164 (189)
|+ ++|+||.+||+|++.+++++++|+|++.++++||+.|++. ++|+.+||++++++||..+.+|| ..
T Consensus 138 D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~-----------~~ms~eea~~la~~al~~~~~rd~~~ 205 (263)
T 1iru_F 138 DD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEF-----------MECNLNELVKHGLRALRETLPAEQDL 205 (263)
T ss_dssp ET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHH-----------TTCCHHHHHHHHHHHHHTTSCTTCCC
T ss_pred cC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhccc-----------CCCCHHHHHHHHHHHHHHHHhccccC
Confidence 97 4599999999999999999999999999999999999831 28999999999999999999999 47
Q ss_pred cCCceEEEEEeCCC
Q 029724 165 TGDKLEIVVLNKDG 178 (189)
Q Consensus 165 s~~~~~i~iit~~g 178 (189)
++++++|++|++++
T Consensus 206 sg~~iev~vi~~~~ 219 (263)
T 1iru_F 206 TTKNVSIGIVGKDL 219 (263)
T ss_dssp CTTTEEEEEEETTE
T ss_pred CCCcEEEEEEECCC
Confidence 89999999999994
No 42
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=8.6e-37 Score=244.83 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=145.0
Q ss_pred cccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--h--cCCCcceeeEEEEE
Q 029724 10 RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--K--RFFPYYSFNVLGGL 85 (189)
Q Consensus 10 ~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~--r~~P~~v~~ivaG~ 85 (189)
++.+||++|++|++|++||..+|++.++++++.+++.|++++|++++++.++++++++++. + +.|||+|++|||||
T Consensus 57 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~ 136 (233)
T 1ryp_F 57 SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGY 136 (233)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999953 2 26799999999999
Q ss_pred cCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhHhcc-
Q 029724 86 DNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPL--SEAEAVDLVKTCFASATERD- 162 (189)
Q Consensus 86 D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~m--s~~ea~~~~~~~l~~~~~~d- 162 (189)
|++ +|+||.+||+|++.+++++|+|+|++.++++||+.|++. ++| +.+||++++++||..+. ||
T Consensus 137 D~~-gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~-----------~~m~~s~eea~~~a~~al~~~~-~d~ 203 (233)
T 1ryp_F 137 DKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTF-----------IKIDGNPDELIKAGVEAISQSL-RDE 203 (233)
T ss_dssp ETT-EEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHH-----------TTCCSCHHHHHHHHHHHHTTSC-CSS
T ss_pred eCC-cCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccc-----------cccCCCHHHHHHHHHHHHHHHh-hcc
Confidence 974 599999999999999999999999999999999999831 289 99999999999999999 77
Q ss_pred cccCCceEEEEEeCCC
Q 029724 163 IYTGDKLEIVVLNKDG 178 (189)
Q Consensus 163 ~~s~~~~~i~iit~~g 178 (189)
..++++++|++|++++
T Consensus 204 ~~s~~~i~v~vi~~~~ 219 (233)
T 1ryp_F 204 SLTVDNLSIAIVGKDT 219 (233)
T ss_dssp CCCTTTEEEEEEETTE
T ss_pred cCCCCcEEEEEEECCC
Confidence 5789999999999984
No 43
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9.5e-37 Score=246.98 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=150.8
Q ss_pred ccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHh----hcCCCcc
Q 029724 3 TGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLI-YQHQHNKQMSCPAMGQLLSNTLYY----KRFFPYY 77 (189)
Q Consensus 3 ~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~g~~i~~~~la~~ls~~~y~----~r~~P~~ 77 (189)
.|.++.+++.+||++|++|++|++||..+|++.++++++.+++. |++.++.+++++.+++.+++++.. .++|||+
T Consensus 52 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~ 131 (250)
T 1ryp_B 52 SSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFG 131 (250)
T ss_dssp SCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCC
T ss_pred CCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccce
Confidence 36778889999999999999999999999999999999999999 999999999999999999998843 2368999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
|++||||||++++|+||.+||+|++.+++++++|+|+++++++||+.|++ +|+.+||++++++||..
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~ 198 (250)
T 1ryp_B 132 VSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND-------------ELELEDAIHIALLTLKE 198 (250)
T ss_dssp EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHH
Confidence 99999999986779999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEEeCCC
Q 029724 158 ATERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit~~g 178 (189)
+.+++ .++++++|++|++++
T Consensus 199 ~~~~~-~sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 199 SVEGE-FNGDTIELAIIGDEN 218 (250)
T ss_dssp HCCSC-CSTTTEEEEEECSCC
T ss_pred Hhccc-cCCCCEEEEEEEccc
Confidence 99886 489999999999974
No 44
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.4e-36 Score=243.20 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=149.1
Q ss_pred CccceeeecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--hc--CCCcc
Q 029724 2 STGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYY--KR--FFPYY 77 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~--~r--~~P~~ 77 (189)
|.| ++.+++.+||++|++|++|++||..+|++.|+++++.+++.|++.++++++++.+|++++++++. ++ .|||+
T Consensus 55 ~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~ 133 (246)
T 1j2p_A 55 GSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFG 133 (246)
T ss_dssp SCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCC
T ss_pred Ccc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccccc
Confidence 344 35578999999999999999999999999999999999999999999999999999999999954 33 67999
Q ss_pred eeeEEEEEcCCCceEEEEEcCCCCeeeeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 029724 78 SFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFAS 157 (189)
Q Consensus 78 v~~ivaG~D~~g~p~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~ 157 (189)
+++|||||| ++|+||.+||+|++.+++++|+|+|+++++++||+.|++ +|+.+||++++++||..
T Consensus 134 v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~ 198 (246)
T 1j2p_A 134 VSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRD-------------DLSFDDAMVLGLVAMGL 198 (246)
T ss_dssp EEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhcc-------------CCCHHHHHHHHHHHHHH
Confidence 999999999 459999999999999999999999999999999999995 99999999999999999
Q ss_pred hHhcccccCCceEEEEEe-CC-Cee
Q 029724 158 ATERDIYTGDKLEIVVLN-KD-GIH 180 (189)
Q Consensus 158 ~~~~d~~s~~~~~i~iit-~~-g~~ 180 (189)
+.++ ..++++++|++|+ ++ +++
T Consensus 199 ~~~~-~~sg~~i~v~vi~~~~~~~~ 222 (246)
T 1j2p_A 199 SIES-ELVPENIEVGYVKVDDRTFK 222 (246)
T ss_dssp HHTS-CCCGGGEEEEEEETTTCCCE
T ss_pred Hhhc-cCCCCcEEEEEEEcCCCceE
Confidence 9998 7789999999999 64 444
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=3.1e-36 Score=245.23 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=143.1
Q ss_pred ecccCeeEEecCceEEEecCChHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH---HhhcCCCcceeeEEEE
Q 029724 9 SRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTL---YYKRFFPYYSFNVLGG 84 (189)
Q Consensus 9 ~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g-~~i~~~~la~~ls~~~---y~~r~~P~~v~~ivaG 84 (189)
+++.+|||+|++|++|++||+.+|++.|+++++.+++.|++.++ ++++++.+|+++++++ |+.+++||+|++||||
T Consensus 47 s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG 126 (259)
T 1q5q_A 47 STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAE 126 (259)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEE
T ss_pred CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEE
Confidence 36789999999999999999999999999999999999999887 5999999999999963 7777889999999999
Q ss_pred Ec--C-CCceEEEEEcCCCCee-eeCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhH-
Q 029724 85 LD--N-EGKGCVYTYDAVGSYE-RVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASAT- 159 (189)
Q Consensus 85 ~D--~-~g~p~Ly~iD~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~~~~- 159 (189)
|| + +++|+||.+||+|++. +++++++|+|++.++++||+.|++ +|+.+||++++++||..+.
T Consensus 127 ~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~-------------~ms~eea~~la~~al~~~~~ 193 (259)
T 1q5q_A 127 VGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRA-------------DLDLEAAVGIAVNALRQGGA 193 (259)
T ss_dssp CCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCT-------------TCCHHHHHHHHHHHHTTCC-
T ss_pred EcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccC-------------CCCHHHHHHHHHHHHHHHhh
Confidence 99 3 5669999999999999 789999999999999999999995 9999999999999999998
Q ss_pred ----hcccccCCceEEEEEeCCC
Q 029724 160 ----ERDIYTGDKLEIVVLNKDG 178 (189)
Q Consensus 160 ----~~d~~s~~~~~i~iit~~g 178 (189)
+||. ++++++|++|+++|
T Consensus 194 ~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 194 GEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp -------C-CSSCSEEEEEETTS
T ss_pred cccccccC-CCCcEEEEEEECCC
Confidence 8998 89999999999995
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.97 E-value=6.7e-31 Score=201.87 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=132.4
Q ss_pred CccceeeecccCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCccee
Q 029724 2 STGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~~P~~v~ 79 (189)
|.|..+.+++.+||++| ++|++++++|..+|++.|.++++.+++.|++ +....+..+++.++++| ++| ++
T Consensus 21 t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~r~--~~ 92 (174)
T 1g3k_A 21 SLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKSAVELAKDWRTDRALRK--LE 92 (174)
T ss_dssp EETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSTTGGG--CC
T ss_pred ccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHHhccCcCc--ce
Confidence 56889999999999999 9999999999999999999999999999975 45566778888888877 445 46
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeC---eEEEcCChhhhHHHHHhhcC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVG---YSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCF 155 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~~~~~~~~~~~~~ms~~ea~~~~~~~l 155 (189)
++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ + +|+.+ +++++||
T Consensus 93 ~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~-------------~mt~~---~l~~~al 153 (174)
T 1g3k_A 93 AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENT-------------ELSAH---EIVEKSL 153 (174)
T ss_dssp CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHC-------------CCCHH---HHHHHHH
T ss_pred EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccC-------------CCCHH---HHHHHHH
Confidence 7888887 49999999999999988 99999999999999999999 5 89955 7999999
Q ss_pred HHhHhcccccCCceEEEEEe
Q 029724 156 ASATERDIYTGDKLEIVVLN 175 (189)
Q Consensus 156 ~~~~~~d~~s~~~~~i~iit 175 (189)
+.+.+||..++++++|++|+
T Consensus 154 ~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 154 RIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp HHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHhccccCCceEEEEec
Confidence 99999999999999999986
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.97 E-value=7.5e-31 Score=201.02 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=130.3
Q ss_pred CccceeeecccCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCccee
Q 029724 2 STGYSILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-FFPYYSF 79 (189)
Q Consensus 2 t~G~~i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~~P~~v~ 79 (189)
|.|..+.+++.+|||+| ++|++++++|..+|++.+.++++.+++.|+++ .++.++++ ++.+|++| .+||+++
T Consensus 21 ~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l-~~~~~~~~~~~~~~~~ 94 (171)
T 1m4y_A 21 TFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVEL-AKDWRTDRVLRRLEAL 94 (171)
T ss_dssp EETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHH-HHHHHHCTTGGGCCCE
T ss_pred ccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHH-HHHHHHhCCCCceEEE
Confidence 56889999999999999 99999999999999999999999999988754 26666665 45677766 5579999
Q ss_pred eEEEEEcCCCceEEEEEcCCCCeeeeC--eEEEcCChhhhHHHHHhhcC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 80 NVLGGLDNEGKGCVYTYDAVGSYERVG--YSSQGSGSTLIMPFLDNQLK-SPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 80 ~ivaG~D~~g~p~Ly~iD~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
+|+| | +|+||.+||+|++.+++ +.++|+|+++++++||+.|+ + +|+. .+++++||+
T Consensus 95 ~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~-------------~ms~---~~l~~~al~ 153 (171)
T 1m4y_A 95 LLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNT-------------DLSA---REIVEKAMT 153 (171)
T ss_dssp EEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHC-------------CCCH---HHHHHHHHH
T ss_pred EEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccC-------------CCCH---HHHHHHHHH
Confidence 9998 5 49999999999999987 99999999999999999999 5 8986 678999999
Q ss_pred HhHhcccccCCceEEEEE
Q 029724 157 SATERDIYTGDKLEIVVL 174 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~ii 174 (189)
.+.+||..++++++|+++
T Consensus 154 ~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 154 IAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHCTTCCSCCEEEEC
T ss_pred HHHHhCcccCCeEEEEEC
Confidence 999999999999999864
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.97 E-value=2e-30 Score=200.37 Aligned_cols=150 Identities=18% Similarity=0.202 Sum_probs=129.3
Q ss_pred Cccce-eeecccCeeEEe-cCceEEEecCChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-CCCcce
Q 029724 2 STGYS-ILSRDYSKIIKL-ADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKR-FFPYYS 78 (189)
Q Consensus 2 t~G~~-i~~~~~~Ki~~I-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~y~~r-~~P~~v 78 (189)
|.|.. +.+++.+||++| ++|+++|++|..+|++.|.++++.+++.|+ | ..++..+ .+++.+++.+ +|||++
T Consensus 26 t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~~~~~~-~l~~~~~~~~~~rp~~~ 99 (180)
T 2z3b_A 26 TFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NLKRAAV-ELAKEWRSDKVLRKLEA 99 (180)
T ss_dssp EETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CHHHHHH-HHHHHHHHCTTGGGCCC
T ss_pred cCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--ChHHHHH-HHHHHHHhhhCcCcceE
Confidence 56778 999999999999 999999999999999999999999999987 3 2333333 4666666655 679999
Q ss_pred eeEEEEEcCCCceEEEEEcCCCCeee--eCeEEEcCChhhhHHHHHhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029724 79 FNVLGGLDNEGKGCVYTYDAVGSYER--VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFA 156 (189)
Q Consensus 79 ~~ivaG~D~~g~p~Ly~iD~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~ms~~ea~~~~~~~l~ 156 (189)
++||| | +|+||.+||+|++.+ ++++|+|+|+++++++||+.|++.+ ++|+.+| ++++||+
T Consensus 100 ~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~----------~~mt~ee---l~~~al~ 161 (180)
T 2z3b_A 100 MLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG----------ESMSASE---IARAALE 161 (180)
T ss_dssp CEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG----------GGCCHHH---HHHHHHH
T ss_pred EEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC----------CCCCHHH---HHHHHHH
Confidence 99999 4 399999999999998 4899999999999999999998300 1799999 4779999
Q ss_pred HhHhcccccCCceEEEEEe
Q 029724 157 SATERDIYTGDKLEIVVLN 175 (189)
Q Consensus 157 ~~~~~d~~s~~~~~i~iit 175 (189)
.+.+||..++++++|.+|+
T Consensus 162 ~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 162 TAGEICVYTNDQIILEELE 180 (180)
T ss_dssp HHHHHCTTCCSCCEEEEEC
T ss_pred HHHHhcCccCCeEEEEEEC
Confidence 9999999999999999983
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=63.52 E-value=24 Score=26.59 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeEEe
Q 029724 140 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREY 183 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~~~ 183 (189)
+.+++++|.+++..++..+.++. ..+.|.|++..|...-.
T Consensus 63 ~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~lla~ 102 (192)
T 3fpw_A 63 THLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTLVT 102 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEEEE
Confidence 58999999999999999998864 47999999998865433
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=43.45 E-value=41 Score=23.89 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCeeEE
Q 029724 140 TPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHRE 182 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~~~~ 182 (189)
+.+|.++|.+++..+...+.++ +..+.|.|++..|...-
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll~ 48 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTLL 48 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEEE
Confidence 4799999999999999998875 35799999998885543
No 51
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=37.75 E-value=43 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHhHhcc
Q 029724 141 PLSEAEAVDLVKTCFASATERD 162 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d 162 (189)
+||.|+|.++.++.++..+-+|
T Consensus 24 ~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 24 NMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999877665
No 52
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=34.70 E-value=53 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHhHhcc
Q 029724 141 PLSEAEAVDLVKTCFASATERD 162 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d 162 (189)
+||.++|.++.++.++..+-+|
T Consensus 29 ~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 29 AMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887665
No 53
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=34.15 E-value=63 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.6
Q ss_pred CCCH--HHHHHHHHHHHHHhHhccc
Q 029724 141 PLSE--AEAVDLVKTCFASATERDI 163 (189)
Q Consensus 141 ~ms~--~ea~~~~~~~l~~~~~~d~ 163 (189)
.++. .|.+++|++||..+++-|.
T Consensus 38 ~ls~D~~ESLEVAIqCI~~AF~Vd~ 62 (92)
T 4asv_A 38 EISEDGADSLNVAMDCISEAFGFER 62 (92)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4554 4569999999999987553
No 54
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=32.24 E-value=78 Score=19.95 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.7
Q ss_pred CCCH--HHHHHHHHHHHHHhHhccc
Q 029724 141 PLSE--AEAVDLVKTCFASATERDI 163 (189)
Q Consensus 141 ~ms~--~ea~~~~~~~l~~~~~~d~ 163 (189)
.++. .|.+++|++|+..+++-|.
T Consensus 26 ~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 26 EISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 4554 4569999999999987653
No 55
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=28.07 E-value=78 Score=19.73 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
.|+.+||+..+.+.|..+..+-....+.-.+.||+=.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 799999999998888776541001122346788887665
No 56
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=24.89 E-value=64 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.8
Q ss_pred CCCH--HHHHHHHHHHHHHhHhccc
Q 029724 141 PLSE--AEAVDLVKTCFASATERDI 163 (189)
Q Consensus 141 ~ms~--~ea~~~~~~~l~~~~~~d~ 163 (189)
.++. .|.+++|++|+..+++-|.
T Consensus 21 ~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 21 GLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 4544 4679999999999997654
No 57
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=23.88 E-value=1.1e+02 Score=19.58 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHhHhcccccCCceEEEEEeCCCe
Q 029724 141 PLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGI 179 (189)
Q Consensus 141 ~ms~~ea~~~~~~~l~~~~~~d~~s~~~~~i~iit~~g~ 179 (189)
.|+.+||++.+.+.|..+...-....+.-.|.||+=.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 799999999999988876531000122346888887664
No 58
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=22.15 E-value=1.5e+02 Score=20.80 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 029724 29 FQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTL 68 (189)
Q Consensus 29 ~~aD~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~ls~~~ 68 (189)
++.|--.+++.+| .|..+++..++++.|++.+..-+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 3445555566555 44456788899999999885544
No 59
>3cs5_A Phycobilisome degradation protein NBLA; photosynthesis, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning; 2.20A {Synechococcus SP}
Probab=20.86 E-value=44 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHhcc
Q 029724 140 TPLSEAEAVDLVKTCFASATERD 162 (189)
Q Consensus 140 ~~ms~~ea~~~~~~~l~~~~~~d 162 (189)
.+||.|+|.++.++.++..+-+|
T Consensus 26 ~~ls~EQaqe~Lve~~rQmmike 48 (59)
T 3cs5_A 26 RDISREDLEDLFIEVVRQKMAHE 48 (59)
T ss_dssp SSSCTGGGTHHHHTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999887665
Done!