BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029725
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 23 FATVYNVGESSGWT--MGTDYSTWTSGKTFAVGDSLVFNYGSG-HTVDEVSGSDYNSCTV 79
ATV+ VG+S+GWT + DY+ W S F VGDSL+FNY + H V +V + SC
Sbjct: 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 80 GNAITSDSSGATTITLKTAGTHYFICGVPGHCGSGMKLAVTV 121
+ S +SGA +I LK GT YF+CG+PGHC G K+ + V
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 27 YNVGESSGWTMGTD---YSTWTSGKTFAVGDSLVFNYGSG-HTVDEVSGSDYNSCTVGNA 82
Y+VG W +D Y TW +GKTF VGD L F++ +G H V V+ +++C N
Sbjct: 4 YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63
Query: 83 ITSDSSGATTITLKTAGTHYFICGVPGHCGSGMKLAVTV 121
I+ ++ I L T G Y+IC V HC G KL++ V
Sbjct: 64 ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 26 VYNVGESSGWTMGTDYSTWTSGKTFAVGDSLVFNYG-SGHTVDEVSGSDYNSCTVGNAIT 84
VY VG S GWT T+ +W GK F GD L+FNY S H V V+ +++C
Sbjct: 2 VYVVGGSGGWTFNTE--SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAK 59
Query: 85 SDSSGATTITLKTAGTHYFICGVPGHCGSGMKLAVT 120
+SG I L G YFIC PGHC SGMK+AV
Sbjct: 60 VYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 24 ATVYNVGESSGWTMGTD---YSTWTSGKTFAVGDSLVFNY-GSGHTVDEVS-GSDYNSCT 78
+TV+ VG+++GW++ + YS W +GKTF VGDSL FN+ + H V E+ +++C
Sbjct: 3 STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 79 VGNAITSDSSGATTI-TLKTAGTHYFICGVPGHCGSGMKLAVTV 121
N+ + I L G HYF+C V HC +G KL++ V
Sbjct: 63 FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 25 TVYNVGESSGWTMGTDYSTWTSGKTFAVGDSLVFNYGSG-HTVDEVSGSDYNSCTVGNAI 83
VYN+G W+ + GK+F GD LVF Y G H V V+G Y SC+
Sbjct: 1 AVYNIG----WSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGA 53
Query: 84 TSDSSGATTITLKTAGTHYFICGVPGHCGSGMKLAVT 120
+ SSG I L T G +YFIC PGHCG GMK+A+
Sbjct: 54 RTYSSGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 128 TAGTYYYVCQIPGHAATGM 146
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 130 TAGTYYYVCQIPGHAATGM 148
>pdb|1RCY|A Chain A, Rusticyanin (Rc) From Thiobacillus Ferrooxidans
Length = 151
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 126 TAGTYYYVCQIPGHAATGM 144
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 130 TAGTYYYVCQIPGHAATGM 148
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 130 TAGTYYYVCQIPGHAATGM 148
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +GM
Sbjct: 129 TAGTYYYVCQIPGHAATGM 147
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +G+
Sbjct: 130 TAGTYYYVCQIPGHAATGL 148
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 83 ITSDSSGATTITLKTAGTHYFICGVPGHCGSGMKLAVTV 121
+ + SG+ T GT+ +IC PGH +GMK +TV
Sbjct: 100 LNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PGH +G
Sbjct: 130 TAGTYYYVCQIPGHAATGQ 148
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 97 TAGTHYFICGVPGHCGSGM 115
TAGT+Y++C +PG +GM
Sbjct: 129 TAGTYYYVCQIPGMAATGM 147
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin Type
E Is Unique: Its Implication In Faster Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin Type
E Is Unique: Its Implication In Faster Translocation
Length = 1252
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 32 SSGWTMGTDYS--TWTSGKTFAVGDSLVFNYGSGHTVDEVSGSDYNSCTVGNAITSDSSG 89
+SGW + +++ WT + L FNYG+ + + SDY + + IT+D G
Sbjct: 947 NSGWKVSLNHNEIIWTLQDNAGINQKLAFNYGNANGI-----SDYINKWIFVTITNDRLG 1001
Query: 90 ATTI 93
+ +
Sbjct: 1002 DSKL 1005
>pdb|9PCY|A Chain A, High-Resolution Solution Structure Of Reduced French Bean
Plastocyanin And Comparison With The Crystal Structure
Of Poplar Plastocyanin
Length = 99
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 53 GDSLVF--NYGSGHTV----DEV-SGSDYNSCTVGNAITSDSSGAT-TITLKTAGTHYFI 104
G+ +VF N G H V DE+ +G D ++ ++ G T +TL T GT+ F
Sbjct: 24 GEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFY 83
Query: 105 CGVPGHCGSGMKLAVTV 121
C H G+GM VTV
Sbjct: 84 CS--PHQGAGMVGKVTV 98
>pdb|2AAN|A Chain A, Auracyanin A: A "blue" Copper Protein From The Green
Thermophilic Photosynthetic Bacterium,Chloroflexus
Aurantiacus
Length = 139
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 92 TITLKTAGTHYFICGVPGH 110
T T AGT+ +IC VPGH
Sbjct: 110 TFTAPAAGTYLYICTVPGH 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,400,834
Number of Sequences: 62578
Number of extensions: 152988
Number of successful extensions: 443
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 36
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)