BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029726
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing factor 2 OS=Mus musculus
GN=Rasgrf2 PE=1 SV=2
Length = 1189
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +++L+ + P +HQ +P I + +
Sbjct: 154 VETEKIATNQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHVHQEEEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + T+ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAETEYVHQLYIL 265
>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing factor 2 OS=Danio rerio
GN=rasgrf2 PE=3 SV=1
Length = 1244
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +I+L+ + P + Q +P I + +
Sbjct: 150 VETEKVAANQLRTQLEDQDTEIERL-KAEIIALNKTKERMRPYHVFQEEEDPDIKKIKKV 208
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + T+ V +L++L
Sbjct: 209 QSFMRGWLCRRKWKIIVQDYICSPHAESMRKRNQIVFNMVEAETEYVHQLSIL 261
>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor 2 OS=Rattus
norvegicus GN=Rasgrf2 PE=1 SV=1
Length = 1190
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +++L+ + P HQ +P I + +
Sbjct: 154 VETEKIAANQLRHQLEDQDTEIERL-KSEIVALNKTKERMRPYHTHQEEEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens
GN=RASGRF2 PE=1 SV=2
Length = 1237
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 3 LEFECSNVNKWKEALASYEARVESLNKPNLISLDDYYRKELPSLIHQRNPNPHINTTE-L 61
+E E N+ + L + +E L K +I+L+ + P +Q + +P I + +
Sbjct: 154 VETEKIAANQLRHQLEDQDTEIERL-KSEIIALNKTKERMRPYQSNQEDEDPDIKKIKKV 212
Query: 62 SKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVL 114
+R L R KW+ + D++ S S++ ++ F + ++ V +L +L
Sbjct: 213 QSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYIL 265
>sp|Q7USB0|RUVA_RHOBA Holliday junction ATP-dependent DNA helicase RuvA OS=Rhodopirellula
baltica (strain SH1) GN=ruvA PE=3 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 33 ISLDDYYRKELPSLIHQRNPNPHINTTELSKL--VRWKLTRGKWRPRLL----------- 79
+ + DY R++L + I N L L + G+ PRL+
Sbjct: 28 VYVGDYTRRQLQNQIG--------NEVRLHTLDYIEGNAQGGRLTPRLIGFSTLPERQFF 79
Query: 80 DFVSSLDDSSVKSASEKAFKSLPDLTKAVSE-----LTVLKGVGPATASAVLA 127
D S+D VK A + + +L + E L+ L G+GPAT+ V+A
Sbjct: 80 DLFCSVDGVGVKKALRAMVRPVKELAVLIEEQDAKTLSALPGIGPATSEKVIA 132
>sp|A9WT69|UVRC_RENSM UvrABC system protein C OS=Renibacterium salmoninarum (strain ATCC
33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235)
GN=uvrC PE=3 SV=1
Length = 655
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 71 RGK-WRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAA 128
RGK LLD V L +S K A K F S+ L A VS+++ +KG+GP A AV +A
Sbjct: 577 RGKSMTASLLDGVPGLGESKQK-ALLKHFGSVKKLQSADVSQISEVKGIGPVLAEAVRSA 635
>sp|B0CEV0|Y4368_ACAM1 UPF0758 protein AM1_4368 OS=Acaryochloris marina (strain MBIC
11017) GN=AM1_4368 PE=3 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 109 SELTVLKGVGPATASAVLAAYAPG 132
SELT ++G+GPA A+ +LAA G
Sbjct: 77 SELTTIQGIGPAKATTILAAIELG 100
>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl PE=2 SV=1
Length = 692
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 81 FVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAP 135
F SS S S F SLP AVSELT+ K P S+ + ++P + P
Sbjct: 407 FQSSTHPSQQSYQSMSHFVSLPPPYAAVSELTLPKRTTPYMTSSTITQFSPVLPP 461
>sp|B0JTF4|Y4435_MICAN UPF0758 protein MAE_44350 OS=Microcystis aeruginosa (strain
NIES-843) GN=MAE_44350 PE=3 SV=1
Length = 243
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 109 SELTVLKGVGPATASAVLAAYAPGVAPFM----------SDEAMGAALGHSKDYS 153
ELT + G+GPA A+ +LAA G F S + A LGH Y
Sbjct: 77 QELTAIHGIGPAKATTILAAIELGKRAFQRRPTEKMVIDSPDTAAAILGHELMYQ 131
>sp|A8LW31|UVRC_SALAI UvrABC system protein C OS=Salinispora arenicola (strain CNS-205)
GN=uvrC PE=3 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 79 LDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA 130
LD VS L + K A + F SL L A V E+T + G+G TA A+LAA A
Sbjct: 599 LDRVSGLGEVRRK-ALLRHFGSLKRLAAASVEEITEVPGIGKRTAEAILAALA 650
>sp|Q54K57|TPSA_DICDI Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A
OS=Dictyostelium discoideum GN=tpsA PE=2 SV=1
Length = 733
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 ELEFECSNVNKWKEALASYEARVESLNKPN-LISLDDYYRKELPSLIHQRNPNPHI 56
+L+++ N + EA + + V + KPN L+ + DY+ LP ++ Q+ P+ I
Sbjct: 117 DLDYDDRIWNSYVEANEQFSSVVAEILKPNDLVWVHDYHMMLLPEILKQKKPDARI 172
>sp|Q7MW36|RUVA_PORGI Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=ruvA PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTAQLILSSYAP 94
>sp|Q1B9D1|UVRC_MYCSS UvrABC system protein C OS=Mycobacterium sp. (strain MCS) GN=uvrC
PE=3 SV=1
Length = 676
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEA 141
F S+ L +A V E+T + G+G TA AVL A P AP SD A
Sbjct: 618 FGSVARLKEASVEEITAVPGIGVTTARAVLEALGVPQAAPADSDTA 663
>sp|A1UFN2|UVRC_MYCSK UvrABC system protein C OS=Mycobacterium sp. (strain KMS) GN=uvrC
PE=3 SV=1
Length = 676
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEA 141
F S+ L +A V E+T + G+G TA AVL A P AP SD A
Sbjct: 618 FGSVARLKEASVEEITAVPGIGVTTARAVLEALGVPQAAPADSDTA 663
>sp|A4X9H1|UVRC_SALTO UvrABC system protein C OS=Salinispora tropica (strain ATCC BAA-916
/ DSM 44818 / CNB-440) GN=uvrC PE=3 SV=1
Length = 665
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 79 LDFVSSLDDSSVKSASEKAFKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPGVAP 135
LD V L + K A + F SL L+ A V E+T + GVG TA A+LAA P
Sbjct: 604 LDRVPGLGEVRRK-ALLRHFGSLKRLSAASVEEITEVPGVGQRTAEAILAALGDSTQP 660
>sp|Q8DI83|Y1707_THEEB UPF0758 protein tlr1707 OS=Thermosynechococcus elongatus (strain
BP-1) GN=tlr1707 PE=3 SV=1
Length = 250
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 94 SEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMS 138
S A +L D+T EL + GVGPA A+ +LAA G F S
Sbjct: 68 STDAVSALRDITP--EELMAIPGVGPAKATTILAAVELGKRVFQS 110
>sp|B2RJ07|RUVA_PORG3 Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=ruvA PE=3 SV=1
Length = 202
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 109 SELTVLKGVGPATASAVLAAYAP 131
+LT + GVGP TA +L++YAP
Sbjct: 72 GQLTSVSGVGPTTARLILSSYAP 94
>sp|Q3E954|BOR6_ARATH Probable boron transporter 6 OS=Arabidopsis thaliana GN=BOR6 PE=2
SV=2
Length = 671
Score = 30.0 bits (66), Expect = 9.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 92 SASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGV---APFMSDEAMGAALGH 148
S + F LP ++ TV+K +G +LAA+ PGV + D ++ + +
Sbjct: 263 SVPRRLFCPLPWEPASLYHWTVVKDMGKVPIMYILAAFIPGVMIAGLYFFDHSVASQMAQ 322
Query: 149 SKDYSLR 155
K+++L+
Sbjct: 323 QKEFNLK 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,493,100
Number of Sequences: 539616
Number of extensions: 2408487
Number of successful extensions: 9014
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9005
Number of HSP's gapped (non-prelim): 31
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)