Query 029726
Match_columns 189
No_of_seqs 119 out of 146
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhf_A Mjogg, N-glycosylase/DN 97.6 0.00031 1E-08 58.7 9.3 76 98-175 113-197 (214)
2 3n0u_A Probable N-glycosylase/ 97.6 0.00024 8.1E-09 59.5 8.4 72 103-175 123-202 (219)
3 3fhg_A Mjogg, N-glycosylase/DN 97.6 0.00034 1.2E-08 57.5 9.2 72 103-175 111-190 (207)
4 3s6i_A DNA-3-methyladenine gly 96.6 0.0033 1.1E-07 52.5 6.2 38 104-142 134-173 (228)
5 2h56_A DNA-3-methyladenine gly 96.2 0.008 2.8E-07 50.2 6.3 38 105-143 134-173 (233)
6 3i0w_A 8-oxoguanine-DNA-glycos 96.1 0.0034 1.2E-07 54.1 3.7 41 103-145 205-247 (290)
7 2xhi_A N-glycosylase/DNA lyase 96.0 0.049 1.7E-06 48.4 10.4 34 103-136 247-282 (360)
8 4e9f_A Methyl-CPG-binding doma 96.0 0.0038 1.3E-07 49.9 2.9 73 57-132 44-127 (161)
9 2yg9_A DNA-3-methyladenine gly 95.8 0.016 5.4E-07 48.2 6.3 39 103-142 140-180 (225)
10 4b21_A Probable DNA-3-methylad 95.8 0.0072 2.5E-07 50.7 4.0 38 104-142 145-184 (232)
11 2jhn_A ALKA, 3-methyladenine D 95.7 0.031 1.1E-06 48.0 7.9 38 105-143 206-244 (295)
12 1mpg_A ALKA, 3-methyladenine D 95.7 0.019 6.3E-07 49.0 6.4 43 103-146 201-245 (282)
13 1pu6_A 3-methyladenine DNA gly 95.4 0.015 5.1E-07 48.1 4.7 38 104-142 116-153 (218)
14 1kg2_A A/G-specific adenine gl 95.1 0.011 3.7E-07 48.9 2.9 37 106-143 106-142 (225)
15 2abk_A Endonuclease III; DNA-r 94.9 0.024 8.2E-07 46.3 4.4 25 105-129 105-129 (211)
16 1orn_A Endonuclease III; DNA r 94.5 0.034 1.2E-06 46.1 4.5 25 105-129 109-133 (226)
17 1kea_A Possible G-T mismatches 94.5 0.04 1.4E-06 45.4 4.7 35 106-141 112-146 (221)
18 3fsp_A A/G-specific adenine gl 94.0 0.14 4.9E-06 44.8 7.5 37 105-142 114-150 (369)
19 3n5n_X A/G-specific adenine DN 92.8 0.11 3.7E-06 45.1 4.6 36 107-143 126-162 (287)
20 1s5l_U Photosystem II 12 kDa e 92.1 0.033 1.1E-06 43.8 0.5 37 106-147 60-96 (134)
21 3arc_U Photosystem II 12 kDa e 91.8 0.039 1.3E-06 40.9 0.5 37 106-147 23-59 (97)
22 2duy_A Competence protein come 90.3 0.13 4.5E-06 35.1 2.1 36 107-147 25-60 (75)
23 2i5h_A Hypothetical protein AF 90.2 0.059 2E-06 45.1 0.2 63 78-147 106-169 (205)
24 1x2i_A HEF helicase/nuclease; 89.0 0.27 9.3E-06 32.8 2.8 23 108-130 45-67 (75)
25 2a1j_B DNA excision repair pro 88.9 0.73 2.5E-05 32.5 5.2 42 83-129 11-52 (91)
26 1kft_A UVRC, excinuclease ABC 87.6 0.41 1.4E-05 32.9 3.0 22 108-129 55-76 (78)
27 2ztd_A Holliday junction ATP-d 86.7 0.28 9.4E-06 40.9 2.0 20 109-128 123-142 (212)
28 2edu_A Kinesin-like protein KI 84.9 0.23 8E-06 35.8 0.7 49 108-161 39-87 (98)
29 1ixr_A Holliday junction DNA h 84.5 0.52 1.8E-05 38.4 2.6 24 108-131 71-94 (191)
30 1cuk_A RUVA protein; DNA repai 82.2 0.71 2.4E-05 37.9 2.6 27 105-131 69-95 (203)
31 1z00_A DNA excision repair pro 81.4 1.3 4.4E-05 30.9 3.4 25 105-129 15-39 (89)
32 1x2i_A HEF helicase/nuclease; 81.0 1.4 4.8E-05 29.1 3.3 25 105-129 10-34 (75)
33 2a1j_A DNA repair endonuclease 81.0 0.53 1.8E-05 31.6 1.2 40 108-147 3-43 (63)
34 3u5c_S 40S ribosomal protein S 80.4 2.4 8.1E-05 33.5 4.9 49 106-154 27-81 (146)
35 1z00_A DNA excision repair pro 80.3 1.1 3.9E-05 31.2 2.8 23 108-130 50-72 (89)
36 3iz6_M 40S ribosomal protein S 79.9 1.7 5.8E-05 34.6 3.9 52 103-154 22-79 (152)
37 2a1j_B DNA excision repair pro 79.6 1.1 3.9E-05 31.5 2.6 23 108-130 63-85 (91)
38 3r8n_M 30S ribosomal protein S 77.9 1.9 6.5E-05 32.7 3.5 67 105-173 12-81 (114)
39 1kft_A UVRC, excinuclease ABC 76.9 1.1 3.6E-05 30.7 1.7 21 109-129 24-44 (78)
40 3vdp_A Recombination protein R 76.1 1.4 4.6E-05 37.0 2.4 22 104-125 21-42 (212)
41 3mab_A Uncharacterized protein 73.4 1.4 4.9E-05 32.1 1.7 58 108-165 3-63 (93)
42 3j20_O 30S ribosomal protein S 72.0 3.9 0.00013 32.3 4.1 40 105-144 19-61 (148)
43 1z00_B DNA repair endonuclease 71.5 2.9 0.0001 29.7 3.0 42 106-147 15-57 (84)
44 2xzm_M RPS18E; ribosome, trans 71.1 4.4 0.00015 32.3 4.2 41 105-145 26-69 (155)
45 2bcq_A DNA polymerase lambda; 70.6 1.5 5E-05 38.4 1.4 21 108-128 56-76 (335)
46 3bqs_A Uncharacterized protein 69.8 7.3 0.00025 28.2 4.8 21 109-129 4-24 (93)
47 2fmp_A DNA polymerase beta; nu 69.8 1.6 5.5E-05 38.1 1.5 33 98-130 46-78 (335)
48 1vdd_A Recombination protein R 69.5 2.4 8.1E-05 35.9 2.4 22 104-125 7-28 (228)
49 2fmp_A DNA polymerase beta; nu 67.6 3.2 0.00011 36.2 3.0 64 105-173 94-171 (335)
50 2w9m_A Polymerase X; SAXS, DNA 67.2 3 0.0001 38.7 2.9 24 105-128 93-116 (578)
51 2ihm_A POL MU, DNA polymerase 65.7 3.6 0.00012 36.3 2.9 26 103-128 96-121 (360)
52 2vqe_M 30S ribosomal protein S 65.4 3.1 0.00011 32.1 2.1 41 105-145 13-56 (126)
53 3b0x_A DNA polymerase beta fam 63.2 4 0.00014 37.8 2.9 24 105-128 89-112 (575)
54 2ztd_A Holliday junction ATP-d 62.4 16 0.00056 30.1 6.2 22 139-162 165-186 (212)
55 1vq8_Y 50S ribosomal protein L 61.9 1.6 5.6E-05 36.7 0.0 22 107-128 13-34 (241)
56 1jms_A Terminal deoxynucleotid 61.4 4.8 0.00016 35.8 2.9 26 103-128 115-140 (381)
57 2bcq_A DNA polymerase lambda; 59.0 4.7 0.00016 35.2 2.4 61 107-172 94-167 (335)
58 2ihm_A POL MU, DNA polymerase 57.9 2.4 8.1E-05 37.4 0.3 33 98-130 50-82 (360)
59 1wcn_A Transcription elongatio 57.5 0.76 2.6E-05 31.7 -2.4 52 87-140 17-69 (70)
60 2kp7_A Crossover junction endo 57.0 3.8 0.00013 29.4 1.2 29 98-126 47-75 (87)
61 2bgw_A XPF endonuclease; hydro 53.5 9.4 0.00032 30.6 3.2 23 108-130 161-183 (219)
62 1jms_A Terminal deoxynucleotid 50.4 3.8 0.00013 36.5 0.4 33 98-130 69-101 (381)
63 2nrt_A Uvrabc system protein C 47.1 9.7 0.00033 31.8 2.3 21 109-129 168-188 (220)
64 1ci4_A Protein (barrier-TO-aut 45.9 9.6 0.00033 27.9 1.9 20 110-129 19-38 (89)
65 4gfj_A Topoisomerase V; helix- 44.2 11 0.00037 35.4 2.4 22 108-129 467-488 (685)
66 1ixr_A Holliday junction DNA h 43.4 12 0.00042 30.2 2.4 56 107-164 105-170 (191)
67 3oao_A Uncharacterized protein 41.8 20 0.00069 28.0 3.3 62 54-120 78-143 (147)
68 1cuk_A RUVA protein; DNA repai 41.8 13 0.00046 30.2 2.4 22 107-128 106-127 (203)
69 3sgi_A DNA ligase; HET: DNA AM 40.3 5.9 0.0002 37.8 0.0 14 55-68 487-500 (615)
70 3psf_A Transcription elongatio 40.1 24 0.00083 35.5 4.3 22 108-129 716-737 (1030)
71 1b22_A DNA repair protein RAD5 37.8 17 0.00057 27.2 2.2 44 86-129 34-78 (114)
72 3bbn_M Ribosomal protein S13; 37.3 5.3 0.00018 31.6 -0.7 42 102-143 55-98 (145)
73 2w9m_A Polymerase X; SAXS, DNA 37.2 12 0.00042 34.6 1.6 42 87-128 107-150 (578)
74 3c65_A Uvrabc system protein C 36.9 7.2 0.00025 32.6 0.0 21 109-129 173-193 (226)
75 2bgw_A XPF endonuclease; hydro 35.8 20 0.0007 28.5 2.6 22 108-129 193-214 (219)
76 1vq8_Y 50S ribosomal protein L 34.3 8.4 0.00029 32.3 0.0 33 97-129 35-68 (241)
77 3psi_A Transcription elongatio 33.9 27 0.00093 35.8 3.6 27 103-129 702-734 (1219)
78 1exn_A 5'-exonuclease, 5'-nucl 33.9 17 0.00057 31.3 1.8 16 114-129 208-223 (290)
79 3o18_A C-phycocyanin alpha sub 29.1 32 0.0011 27.1 2.6 52 52-104 15-66 (162)
80 3c1y_A DNA integrity scanning 29.0 27 0.00093 31.3 2.4 42 85-127 323-365 (377)
81 4glx_A DNA ligase; inhibitor, 28.4 36 0.0012 32.1 3.2 21 108-128 543-563 (586)
82 2ziu_A MUS81 protein; helix-ha 26.9 35 0.0012 28.7 2.6 23 107-129 235-257 (311)
83 2fsu_A Protein PHNH; C-P lyase 24.0 58 0.002 26.9 3.4 22 115-137 58-79 (210)
84 3q8k_A Flap endonuclease 1; he 23.9 31 0.0011 29.9 1.8 17 113-129 236-252 (341)
85 3c65_A Uvrabc system protein C 23.1 17 0.0006 30.3 0.0 24 105-129 201-224 (226)
86 3b0x_A DNA polymerase beta fam 22.5 26 0.00089 32.3 1.1 26 102-127 119-146 (575)
87 1rxw_A Flap structure-specific 22.1 38 0.0013 29.0 1.9 17 113-129 239-255 (336)
88 2vml_A Phycocyanin alpha chain 22.0 51 0.0017 25.8 2.5 113 52-169 15-139 (162)
89 3bzc_A TEX; helix-turn-helix, 21.9 20 0.0007 35.0 0.2 22 107-128 506-527 (785)
90 2izo_A FEN1, flap structure-sp 21.6 38 0.0013 29.2 1.8 17 113-129 238-254 (346)
91 2owo_A DNA ligase; protein-DNA 21.5 50 0.0017 31.7 2.8 33 97-129 531-564 (671)
92 1gm5_A RECG; helicase, replica 21.5 31 0.001 33.3 1.3 19 110-128 116-134 (780)
93 3ph0_A ASCE; type III secretio 21.5 1E+02 0.0034 21.3 3.6 25 78-102 5-29 (67)
94 3ory_A Flap endonuclease 1; hy 21.4 39 0.0013 29.6 1.9 34 113-146 255-298 (363)
95 2c7l_B Phycoerythrocyanin beta 21.2 63 0.0022 25.6 2.9 51 52-103 15-65 (172)
96 2vml_B Phycocyanin beta chain; 20.8 68 0.0023 25.4 3.1 51 52-103 15-65 (172)
97 3l0f_B C-phycocyanin beta chai 20.8 64 0.0022 25.6 2.9 51 53-104 16-66 (172)
98 3v57_A Phycoerythrin alpha sub 20.6 41 0.0014 26.5 1.7 50 53-103 16-65 (164)
No 1
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.59 E-value=0.00031 Score=58.74 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=57.1
Q ss_pred HhhCccHHHHHHHhh-cccCcChHHHHHHHHhhcCCCCCcc-cHHHHHHhh---C----CCCCCCHHHHHHHHHHHHHHH
Q 029726 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPGVAPFM-SDEAMGAAL---G----HSKDYSLRQYLLFADKLQAKA 168 (189)
Q Consensus 98 f~~l~d~~~al~~Lt-~LkGVGPATASaiLa~~~P~~~pFf-sDEa~~~~~---g----~~~kYt~keY~~~~~~~~~~~ 168 (189)
|..+.++..+.+.|. +|+||||-||++||.... ..+|+ -|--..-++ | .+...|-+.|.++-..++..+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444457888999999 999999999999998642 23555 666544332 4 235678999999999999999
Q ss_pred HHHhhhc
Q 029726 169 KFLKKIA 175 (189)
Q Consensus 169 ~~L~~~~ 175 (189)
++++...
T Consensus 191 ~~~g~~~ 197 (214)
T 3fhf_A 191 EEVNLKL 197 (214)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9988754
No 2
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.57 E-value=0.00024 Score=59.54 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=54.0
Q ss_pred cHHHHHHHhh-cccCcChHHHHHHHHh-hcCCCCCcccHHHHHHh--hC----CCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 029726 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG----HSKDYSLRQYLLFADKLQAKAKFLKKI 174 (189)
Q Consensus 103 d~~~al~~Lt-~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g----~~~kYt~keY~~~~~~~~~~~~~L~~~ 174 (189)
++..+.+.|+ +|+||||-||++||.. ..++.+| .++-+...+ .| .+..-|-+.|.++-+.+++.++++|..
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~g~~ 201 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGES 201 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6778999999 9999999999999985 3433333 344444422 23 244778999999999999999998875
Q ss_pred c
Q 029726 175 A 175 (189)
Q Consensus 175 ~ 175 (189)
.
T Consensus 202 ~ 202 (219)
T 3n0u_A 202 P 202 (219)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.57 E-value=0.00034 Score=57.49 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=52.6
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHh-hcCCCCCcccHHHHHHh--hC--C---CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG--H---SKDYSLRQYLLFADKLQAKAKFLKKI 174 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g--~---~~kYt~keY~~~~~~~~~~~~~L~~~ 174 (189)
+...+.+.|++||||||-||++||.. ..++ ++...+-+...+ .| . +..-|.++|.++-..++..++.++..
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-LAIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-SCCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-cceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45578999999999999999999996 5543 222333344322 23 1 24678999999999999999988765
Q ss_pred c
Q 029726 175 A 175 (189)
Q Consensus 175 ~ 175 (189)
.
T Consensus 190 ~ 190 (207)
T 3fhg_A 190 V 190 (207)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.61 E-value=0.0033 Score=52.47 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=29.3
Q ss_pred HHHHHHHhhcccCcChHHHHHHHHh--hcCCCCCcccHHHH
Q 029726 104 LTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAM 142 (189)
Q Consensus 104 ~~~al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfsDEa~ 142 (189)
...+++.|++|+||||-||.+||.. ..|+.+| ..|=.+
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp-vdD~~v 173 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP-ADDLSI 173 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe-cccHHH
Confidence 4668999999999999999999976 4676656 344333
No 5
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.21 E-value=0.008 Score=50.15 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.4
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh--cCCCCCcccHHHHH
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~ 143 (189)
..+++.|++|+||||-||++||... .|+.+| ..|=.+.
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~r 173 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGLQ 173 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHHH
Confidence 4789999999999999999999874 666655 4444443
No 6
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=96.13 E-value=0.0034 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHh--hcCCCCCcccHHHHHHh
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMGAA 145 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~--~~P~~~pFfsDEa~~~~ 145 (189)
+...+.+.|++||||||-||..||.. ..|+.+|. |-...-+
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~r~ 247 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVKKA 247 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHHHH
Confidence 46789999999999999999999965 57888885 6655433
No 7
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=95.96 E-value=0.049 Score=48.43 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.8
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHh--hcCCCCCc
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPF 136 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~--~~P~~~pF 136 (189)
+...+++.|++|+||||-||.+||.. ..|+.+|.
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv 282 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV 282 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe
Confidence 35589999999999999999999986 47777674
No 8
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=95.95 E-value=0.0038 Score=49.92 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHH-------HHHhhCc----cHHHHHHHhhcccCcChHHHHHH
Q 029726 57 NTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASE-------KAFKSLP----DLTKAVSELTVLKGVGPATASAV 125 (189)
Q Consensus 57 tkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~-------~Af~~l~----d~~~al~~Lt~LkGVGPATASai 125 (189)
|+++-+.-+-.+|-. .-|+...|.+.+ ++.|++..+ +|-.+.. .+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~--~~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE--KYPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH--HSCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH--HCCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567777666666652 347877776554 444544432 1111100 13334577999999999999999
Q ss_pred HHhhcCC
Q 029726 126 LAAYAPG 132 (189)
Q Consensus 126 La~~~P~ 132 (189)
+++..-+
T Consensus 121 ~~F~~~e 127 (161)
T 4e9f_A 121 RIFCVNE 127 (161)
T ss_dssp HHHTSSC
T ss_pred HHHHCCC
Confidence 9986543
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.82 E-value=0.016 Score=48.19 Aligned_cols=39 Identities=31% Similarity=0.311 Sum_probs=30.0
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHhh--cCCCCCcccHHHH
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAM 142 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~~--~P~~~pFfsDEa~ 142 (189)
+...+++.|++|+||||-||.+||... .|+.+| ..|-..
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp-v~D~~v 180 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS-SGDLAL 180 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC-TTCHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee-CccHHH
Confidence 456789999999999999999999874 566655 335443
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.77 E-value=0.0072 Score=50.67 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccCcChHHHHHHHHhh--cCCCCCcccHHHH
Q 029726 104 LTKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAM 142 (189)
Q Consensus 104 ~~~al~~Lt~LkGVGPATASaiLa~~--~P~~~pFfsDEa~ 142 (189)
...+++.|++||||||-||.+||... .|+.+| ..|-..
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fp-v~D~~v 184 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMP-ADDSTL 184 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CccHHH
Confidence 34689999999999999999999874 576656 335444
No 11
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=95.72 E-value=0.031 Score=47.99 Aligned_cols=38 Identities=34% Similarity=0.384 Sum_probs=29.2
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh-cCCCCCcccHHHHH
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY-APGVAPFMSDEAMG 143 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~-~P~~~pFfsDEa~~ 143 (189)
..+++.|++|+||||-||.+||... .|+.+| ..|=.+.
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~r 244 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGVR 244 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHHH
Confidence 6789999999999999999999862 376655 4454443
No 12
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=95.70 E-value=0.019 Score=48.96 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=33.2
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHhh--cCCCCCcccHHHHHHhh
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMGAAL 146 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~~~~ 146 (189)
+...+++.|++|+||||-||.+||... .|+.+| ..|-.+....
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l 245 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRF 245 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHS
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHh
Confidence 677899999999999999999999864 566544 4565555444
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=95.43 E-value=0.015 Score=48.07 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=27.4
Q ss_pred HHHHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHH
Q 029726 104 LTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (189)
Q Consensus 104 ~~~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (189)
...+++.|++||||||-||++||....-.. .|-.|--.
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v 153 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYS 153 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHH
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHH
Confidence 455788899999999999999999753222 33445443
No 14
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=95.13 E-value=0.011 Score=48.94 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=27.0
Q ss_pred HHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHH
Q 029726 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~ 143 (189)
.+++.|++|+||||-||.+||....-.. -|..|--..
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~ 142 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVK 142 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHH
Confidence 4678999999999999999998753222 245665443
No 15
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.91 E-value=0.024 Score=46.30 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
..+++.|++|+||||-||.+||...
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHH
Confidence 3467889999999999999999974
No 16
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=94.53 E-value=0.034 Score=46.10 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.9
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
..+++.|++|+||||-||.+||...
T Consensus 109 p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 109 PRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp CSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3467899999999999999999874
No 17
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.47 E-value=0.04 Score=45.41 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHH
Q 029726 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEA 141 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa 141 (189)
.+++.|.+|+||||-||.+||....-.. .|-.|--
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~vD~~ 146 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMVDAN 146 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCCCHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhcCCC-cceecHH
Confidence 4578899999999999999999753322 2344543
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=93.96 E-value=0.14 Score=44.80 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=27.1
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHH
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (189)
..+++.|.+|+||||-||.+||+...-..++ .-|--.
T Consensus 114 p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~-~vD~~v 150 (369)
T 3fsp_A 114 PDDPDEFSRLKGVGPYTVGAVLSLAYGVPEP-AVDGNV 150 (369)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHHHCCCCC-CCCHHH
T ss_pred hhHHHHHhcCCCcCHHHHHHHHHHHCCCCcc-cccHHH
Confidence 3467889999999999999999986433333 444433
No 19
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.75 E-value=0.11 Score=45.08 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHhhc-ccCcChHHHHHHHHhhcCCCCCcccHHHHH
Q 029726 107 AVSELTV-LKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (189)
Q Consensus 107 al~~Lt~-LkGVGPATASaiLa~~~P~~~pFfsDEa~~ 143 (189)
.++.|.+ |+||||-||.+||....-.. .|..|--..
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~ 162 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVA 162 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHH
Confidence 5788887 99999999999999864332 345565443
No 20
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=92.13 E-value=0.033 Score=43.84 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHHhhC
Q 029726 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (189)
+..+.|++|+||||++|.+|.. +.||-|=|=+.-+.|
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~-----~GpF~svedL~~V~G 96 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 96 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH-----TCCCSSGGGGGGCTT
T ss_pred cCHHHHHHCCCCCHHHHHHHHH-----cCCCCCHHHHHhCCC
Confidence 3467899999999999999993 558888777776776
No 21
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.77 E-value=0.039 Score=40.88 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHHhhC
Q 029726 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (189)
+..+.|+.|+||||++|..|+. .-||-|-|-+.-+.|
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 3467899999999999999999 348888777766655
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=90.29 E-value=0.13 Score=35.13 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=26.8
Q ss_pred HHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHHhhC
Q 029726 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (189)
....|..++||||.+|..|+... +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 45678899999999999999964 5555555554544
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=90.20 E-value=0.059 Score=45.14 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=41.7
Q ss_pred hhhHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHH-hhC
Q 029726 78 LLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGA-ALG 147 (189)
Q Consensus 78 L~~lv~sN~~~~V~~~t~~Af~~l~d~~~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~-~~g 147 (189)
+.+.|+.|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.- +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 34445555544443 2 3322334667788999999999999999998653 59999666643 665
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.98 E-value=0.27 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHhhcccCcChHHHHHHHHhhc
Q 029726 108 VSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (189)
.+.|++++||||.+|..|.+...
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 56788999999999999988864
No 25
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=88.94 E-value=0.73 Score=32.52 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=27.0
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhcccCcChHHHHHHHHhh
Q 029726 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~d~~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
+.++++.+..-.+.-+ ....+..|+.++||||.||-.||..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 3456666655544433 33456678888889988888888764
No 26
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=87.63 E-value=0.41 Score=32.86 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.5
Q ss_pred HHHhhcccCcChHHHHHHHHhh
Q 029726 108 VSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (189)
.+.|++++||||.+|..|.+..
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4567777777777777776654
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=86.70 E-value=0.28 Score=40.87 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=10.2
Q ss_pred HHhhcccCcChHHHHHHHHh
Q 029726 109 SELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~ 128 (189)
+.|++++|||+-||--|..-
T Consensus 123 ~~L~~vpGIG~KtA~rIi~e 142 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLE 142 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHH
Confidence 44555555555555544433
No 28
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=84.93 E-value=0.23 Score=35.77 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHHhhCCCCCCCHHHHHHHH
Q 029726 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALGHSKDYSLRQYLLFA 161 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g~~~kYt~keY~~~~ 161 (189)
...|..++||||.+|..|+...... -+|-+-+-+..+.| .+.+-+..++
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~G----ig~k~~~~l~ 87 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEG----ITGKQMESFL 87 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTT----CCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCC----CCHHHHHHHH
Confidence 5678899999999999999986432 26655444554544 3444444443
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=84.47 E-value=0.52 Score=38.44 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=13.5
Q ss_pred HHHhhcccCcChHHHHHHHHhhcC
Q 029726 108 VSELTVLKGVGPATASAVLAAYAP 131 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P 131 (189)
+..|.+++||||.||-+||+.+.|
T Consensus 71 f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHhcCCCcCHHHHHHHHHhCCh
Confidence 344555666666666666665443
No 30
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=82.19 E-value=0.71 Score=37.94 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=21.1
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhhcC
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~~P 131 (189)
+.-+..|.+++||||.+|-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 344567888999999999999998655
No 31
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.39 E-value=1.3 Score=30.94 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=20.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
...+..|+.++||||.+|-.|+..+
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 3456678899999999999999874
No 32
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=81.03 E-value=1.4 Score=29.13 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
......|+.++||||.+|..|+..+
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc
Confidence 3345678999999999999999864
No 33
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=80.98 E-value=0.53 Score=31.62 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHHhhcccCcChHHHHHHHHhhc-CCCCCcccHHHHHHhhC
Q 029726 108 VSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEAMGAALG 147 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~-P~~~pFfsDEa~~~~~g 147 (189)
...|..++||||.+.-.||.-+. -+.+.=.|-|-+..+.|
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig 43 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 43 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC
Confidence 46788999999999999998632 12223344444444444
No 34
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=80.40 E-value=2.4 Score=33.51 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHHh---hCCCCCCCH
Q 029726 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~ 154 (189)
...-+||.++|||+.||-.|+... +|+ .+=-.+||-...+ ...+.+|.+
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 344568999999999999999985 554 5566788766543 345556654
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=80.27 E-value=1.1 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred HHHhhcccCcChHHHHHHHHhhc
Q 029726 108 VSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (189)
.+.|++++|||+.+|..|.+...
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999864
No 36
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=79.89 E-value=1.7 Score=34.58 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=35.9
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHHh---hCCCCCCCH
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~ 154 (189)
+-+...-+||.++|||+.||-.|+... +|+ .+=-.+||-...+ ...+.+|.+
T Consensus 22 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 79 (152)
T 3iz6_M 22 GKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKV 79 (152)
T ss_dssp CSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCC
T ss_pred CCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCc
Confidence 334455678999999999999999985 554 5556777766543 334455654
No 37
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=79.59 E-value=1.1 Score=31.49 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHhhcccCcChHHHHHHHHhhc
Q 029726 108 VSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (189)
.+.|++++|||+.+|..|++...
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998863
No 38
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=77.89 E-value=1.9 Score=32.67 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAALGHSKDYSLRQYLLFADKLQAKAKFLKK 173 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~~g~~~kYt~keY~~~~~~~~~~~~~L~~ 173 (189)
+...-.|+.++|||+.||..|+... +|+ .+=-.+||-...+...=.+|.+. -.+-..++.-.++|-+
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~~ie--~dLr~~~~~dI~RL~~ 81 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVE--GDLRREISMSIKRLMD 81 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSSCTT--HHHHHHHHHHHHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHH
Confidence 3445678999999999999999985 565 55667887665332100234443 1333444444444433
No 39
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=76.95 E-value=1.1 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred HHhhcccCcChHHHHHHHHhh
Q 029726 109 SELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (189)
..|..++||||.||-.|+..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 347789999999999999875
No 40
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=76.05 E-value=1.4 Score=37.01 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.4
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 029726 104 LTKAVSELTVLKGVGPATASAV 125 (189)
Q Consensus 104 ~~~al~~Lt~LkGVGPATASai 125 (189)
+.+.++.|.+|+||||-||.=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6788999999999999999754
No 41
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=73.43 E-value=1.4 Score=32.12 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHhhcccCcChHHHHHHHHhhcCCCCC---cccHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 029726 108 VSELTVLKGVGPATASAVLAAYAPGVAP---FMSDEAMGAALGHSKDYSLRQYLLFADKLQ 165 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~P~~~p---FfsDEa~~~~~g~~~kYt~keY~~~~~~~~ 165 (189)
|..|+.|++|||+++-.+-.++-....- -=++++|.-++.....=++.-|-.+..+++
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL~gAi~ 63 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGAVQ 63 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 4568889999999999888875332111 124566665542222334455555555443
No 42
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.96 E-value=3.9 Score=32.32 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHH
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~ 144 (189)
+...-+||.++|||+.||-.|+... +|+ .+=-.+||-...
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 61 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHH
Confidence 3445678999999999999999985 554 566678875543
No 43
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=71.46 E-value=2.9 Score=29.74 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHhhcccCcChHHHHHHHHhhc-CCCCCcccHHHHHHhhC
Q 029726 106 KAVSELTVLKGVGPATASAVLAAYA-PGVAPFMSDEAMGAALG 147 (189)
Q Consensus 106 ~al~~Lt~LkGVGPATASaiLa~~~-P~~~pFfsDEa~~~~~g 147 (189)
.+...|..++||||.+.-.||.-+- .+.+.=.|-|-+..+.|
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig 57 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC
Confidence 4678899999999999999998642 22333355555555555
No 44
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=71.15 E-value=4.4 Score=32.27 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHHh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA 145 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~ 145 (189)
+...-+||.++|||+.||-.|+... +|+ .+=-.+||-...+
T Consensus 26 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l 69 (155)
T 2xzm_M 26 RITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKI 69 (155)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHH
T ss_pred CEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHH
Confidence 4445678999999999999999985 554 5566788766533
No 45
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=70.60 E-value=1.5 Score=38.44 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=13.6
Q ss_pred HHHhhcccCcChHHHHHHHHh
Q 029726 108 VSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~ 128 (189)
+..|++|+|||+.||..|--.
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHH
Confidence 334667777777777776655
No 46
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=69.75 E-value=7.3 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHhhcccCcChHHHHHHHHhh
Q 029726 109 SELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (189)
..|+.|++|||+++-.+-.++
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vG 24 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTT
T ss_pred HHhhcCCCCCHHHHHHHHHcC
Confidence 456778888888888777764
No 47
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=69.75 E-value=1.6 Score=38.11 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=23.9
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHHhhc
Q 029726 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 98 f~~l~d~~~al~~Lt~LkGVGPATASaiLa~~~ 130 (189)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 345553233445689999999999999988754
No 48
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=69.52 E-value=2.4 Score=35.91 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=19.0
Q ss_pred HHHHHHHhhcccCcChHHHHHH
Q 029726 104 LTKAVSELTVLKGVGPATASAV 125 (189)
Q Consensus 104 ~~~al~~Lt~LkGVGPATASai 125 (189)
+..-|+.|.+|+||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 5678999999999999999754
No 49
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=67.65 E-value=3.2 Score=36.20 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHH-------H-hhC------CCCCCCHHHHHHHHHHHHHHHHH
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG-------A-ALG------HSKDYSLRQYLLFADKLQAKAKF 170 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~-------~-~~g------~~~kYt~keY~~~~~~~~~~~~~ 170 (189)
..+|..|++++||||.||..+-.-+-- + =|+.-. . ..| -.......|-..+.+.+.+.+++
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~-t----ledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 168 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIK-T----LEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKK 168 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCC-S----HHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCC-C----HHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHh
Confidence 468999999999999999988554211 0 011111 0 111 13466777777788888877777
Q ss_pred Hhh
Q 029726 171 LKK 173 (189)
Q Consensus 171 L~~ 173 (189)
+..
T Consensus 169 ~~~ 171 (335)
T 2fmp_A 169 VDS 171 (335)
T ss_dssp HCT
T ss_pred cCC
Confidence 654
No 50
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=67.18 E-value=3 Score=38.74 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHhhcccCcChHHHHHHHHh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~ 128 (189)
...+..|+++.||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999986
No 51
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=65.69 E-value=3.6 Score=36.29 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHh
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~ 128 (189)
.+..+|..|+++.||||.||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35568999999999999999988554
No 52
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=65.41 E-value=3.1 Score=32.08 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh--cCC-CCCcccHHHHHHh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA 145 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~ 145 (189)
+...-.|+.++|||+.||..|+... +|+ .+=-.+||-...+
T Consensus 13 k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 13 KRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp SBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred cEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 3345578999999999999999984 555 4556777766544
No 53
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=63.15 E-value=4 Score=37.78 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHHHHHhhcccCcChHHHHHHHHh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~ 128 (189)
...+..|+++.||||.||..|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 346889999999999999999886
No 54
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=62.37 E-value=16 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=10.5
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHH
Q 029726 139 DEAMGAALGHSKDYSLRQYLLFAD 162 (189)
Q Consensus 139 DEa~~~~~g~~~kYt~keY~~~~~ 162 (189)
+|+..++.+ ..|+-+|=...+.
T Consensus 165 ~ea~~AL~~--LGy~~~ea~~av~ 186 (212)
T 2ztd_A 165 SPVVEALVG--LGFAAKQAEEATD 186 (212)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHHH
Confidence 455555542 4455555444433
No 55
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=61.91 E-value=1.6 Score=36.74 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=0.0
Q ss_pred HHHHhhcccCcChHHHHHHHHh
Q 029726 107 AVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~ 128 (189)
....|..|+||||.+|-.||..
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp ----------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHc
Confidence 3446777888888888888875
No 56
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=61.37 E-value=4.8 Score=35.84 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.8
Q ss_pred cHHHHHHHhhcccCcChHHHHHHHHh
Q 029726 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 103 d~~~al~~Lt~LkGVGPATASaiLa~ 128 (189)
.+..+|..|+++.||||.||..+-.-
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHc
Confidence 35568999999999999999988544
No 57
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=59.02 E-value=4.7 Score=35.19 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=37.9
Q ss_pred HHHHhhcccCcChHHHHHHHHhhcCCCCCcccHHHHHHhh-------C------CCCCCCHHHHHHHHHHHHHHHHHHh
Q 029726 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAAL-------G------HSKDYSLRQYLLFADKLQAKAKFLK 172 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~-------g------~~~kYt~keY~~~~~~~~~~~~~L~ 172 (189)
.++.|+++.||||.||..+-.-+-- + + |+.-..+. | -.......|-..+.+.+.+.++.+.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~-t---l-edL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 167 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFR-S---L-EDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFN 167 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCC-S---H-HHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCC-C---H-HHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcC
Confidence 6888999999999999988654211 1 1 22221110 2 1345667777777777777776654
No 58
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=57.92 E-value=2.4 Score=37.45 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=23.6
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHHhhc
Q 029726 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 98 f~~l~d~~~al~~Lt~LkGVGPATASaiLa~~~ 130 (189)
++.+|..-..+..|++|+|||+.||..|--...
T Consensus 50 l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 50 LKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344553223344599999999999999988754
No 59
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=57.54 E-value=0.76 Score=31.70 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHHhhcCCCCCcccHH
Q 029726 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (189)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~-~al~~Lt~LkGVGPATASaiLa~~~P~~~pFfsDE 140 (189)
+..+......+|..+.|+. .+.+.|+.++||+.++|..|.....- .|+|.++
T Consensus 17 ~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 17 RDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 3444444444444433432 25778888888888888887776542 3566543
No 60
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=56.97 E-value=3.8 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=20.3
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHH
Q 029726 98 FKSLPDLTKAVSELTVLKGVGPATASAVL 126 (189)
Q Consensus 98 f~~l~d~~~al~~Lt~LkGVGPATASaiL 126 (189)
++..|..-...+.+..|+||||-++.-|=
T Consensus 47 Lk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 47 LQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 34455444445666789999999998764
No 61
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=53.53 E-value=9.4 Score=30.56 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.4
Q ss_pred HHHhhcccCcChHHHHHHHHhhc
Q 029726 108 VSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~~ 130 (189)
...|+.++||||.+|-.|+.-+.
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 44688999999999999999753
No 62
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=50.41 E-value=3.8 Score=36.51 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.6
Q ss_pred HhhCccHHHHHHHhhcccCcChHHHHHHHHhhc
Q 029726 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (189)
Q Consensus 98 f~~l~d~~~al~~Lt~LkGVGPATASaiLa~~~ 130 (189)
++.+|..-..+..|++|+|||+.||..|--+..
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 345553223444599999999999999987754
No 63
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=47.06 E-value=9.7 Score=31.76 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.4
Q ss_pred HHhhcccCcChHHHHHHHHhh
Q 029726 109 SELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (189)
..|..++||||.||-.||.-+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc
Confidence 467789999999999999864
No 64
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=45.95 E-value=9.6 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred HhhcccCcChHHHHHHHHhh
Q 029726 110 ELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 110 ~Lt~LkGVGPATASaiLa~~ 129 (189)
.+++|+||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 47899999999998877643
No 65
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=44.21 E-value=11 Score=35.42 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.3
Q ss_pred HHHhhcccCcChHHHHHHHHhh
Q 029726 108 VSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (189)
...|+.++||||+||.-+|--+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkF 488 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKY 488 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 66
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=43.39 E-value=12 Score=30.16 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHhhcccCcChHHHHHHHHhhcCCCCCcc----------cHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 029726 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFM----------SDEAMGAALGHSKDYSLRQYLLFADKL 164 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~~~P~~~pFf----------sDEa~~~~~g~~~kYt~keY~~~~~~~ 164 (189)
-.+.|++++|||+.||--|..-......+++ .+|+..++. ...|+-+|=...+..+
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~--~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALA--ALGFKEAQARAVVLDL 170 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-------------------------------------
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHH--HcCCCHHHHHHHHHHH
Confidence 3578999999999999998765432211111 234555544 3566666655544444
No 67
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=41.84 E-value=20 Score=27.96 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHH--HHHHHHHHHH-hhCccHHHHHHHhh-cccCcChH
Q 029726 54 PHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDS--SVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (189)
Q Consensus 54 ~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~--~V~~~t~~Af-~~l~d~~~al~~Lt-~LkGVGPA 120 (189)
.|+|.+||..|...==+ |.-.+++..+|.= ....+++.-- ...|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 58999999999997554 6666777777641 2222222222 34466777777776 69999887
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=41.82 E-value=13 Score=30.18 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.4
Q ss_pred HHHHhhcccCcChHHHHHHHHh
Q 029726 107 AVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~ 128 (189)
-.+.|++++|||+-||--|..-
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHH
Confidence 3578999999999999988653
No 69
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=40.33 E-value=5.9 Score=37.75 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHH
Q 029726 55 HINTTELSKLVRWK 68 (189)
Q Consensus 55 ~ltkdEL~~LveWK 68 (189)
.||.++|..|=.|+
T Consensus 487 ~L~~~~L~~l~~~~ 500 (615)
T 3sgi_A 487 ALTERDLLRTDLFR 500 (615)
T ss_dssp --------------
T ss_pred hCCHHHHhhccccc
Confidence 46777877776553
No 70
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.05 E-value=24 Score=35.52 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHhhcccCcChHHHHHHHHhh
Q 029726 108 VSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (189)
-..|.-+.||||..|.+|+...
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 6778899999999999999875
No 71
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=37.84 E-value=17 Score=27.18 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhhCccHH-HHHHHhhcccCcChHHHHHHHHhh
Q 029726 86 DDSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 86 ~~~~V~~~t~~Af~~l~d~~-~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
.+..+++.-..+|....++. ..-+.|++++|||+++|--|+.+.
T Consensus 34 g~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 34 NANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp SHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 35666666666676554432 236789999999999999999985
No 72
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.34 E-value=5.3 Score=31.58 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=27.7
Q ss_pred ccHHHHHHHhhcccCcChHHHHHHHHhhc-CC-CCCcccHHHHH
Q 029726 102 PDLTKAVSELTVLKGVGPATASAVLAAYA-PG-VAPFMSDEAMG 143 (189)
Q Consensus 102 ~d~~~al~~Lt~LkGVGPATASaiLa~~~-P~-~~pFfsDEa~~ 143 (189)
|+-+...-.|+.++|||+.||..|+.... |+ .+--.+||-..
T Consensus 55 p~~K~v~~aLt~IyGIG~~~A~~I~~~~gI~~~rv~~Lte~ei~ 98 (145)
T 3bbn_M 55 PNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVI 98 (145)
T ss_dssp CCSSBTTTGGGGSTTCCSSTTTGGGTTTTCCSCBTTSCCSSTTH
T ss_pred CCCCEEEEeeeeecCccHHHHHHHHHHcCCCceEcCCCCHHHHH
Confidence 33344456789999999999999998642 22 33445554443
No 73
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.24 E-value=12 Score=34.60 Aligned_cols=42 Identities=31% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhCccHHHHH--HHhhcccCcChHHHHHHHHh
Q 029726 87 DSSVKSASEKAFKSLPDLTKAV--SELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~~al--~~Lt~LkGVGPATASaiLa~ 128 (189)
+..+..+-..+|..+.|+..|+ ..|++++|||+-||.-|+..
T Consensus 107 pk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 107 PKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 4444455444555555777765 36889999999999998654
No 74
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=36.87 E-value=7.2 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHhhcccCcChHHHHHHHHhh
Q 029726 109 SELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 109 ~~Lt~LkGVGPATASaiLa~~ 129 (189)
..|..++||||.||-.||.-+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ---------------------
T ss_pred ccccccCCCCHHHHHHHHHHh
Confidence 467899999999999999874
No 75
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=35.84 E-value=20 Score=28.52 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.3
Q ss_pred HHHhhcccCcChHHHHHHHHhh
Q 029726 108 VSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~~ 129 (189)
.+.|.+++|||+.+|..|....
T Consensus 193 ~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 193 KAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 5678999999999999998775
No 76
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=34.30 E-value=8.4 Score=32.35 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhcccCcChHHHHHHHHhh
Q 029726 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 97 Af~~l~d~~-~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
.|..+.++. +..+.|++++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 455444443 346789999999999999998764
No 77
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=33.93 E-value=27 Score=35.82 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.7
Q ss_pred cHHHH------HHHhhcccCcChHHHHHHHHhh
Q 029726 103 DLTKA------VSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 103 d~~~a------l~~Lt~LkGVGPATASaiLa~~ 129 (189)
|+-.| -..|.-+.||||..|.+|+...
T Consensus 702 diNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r 734 (1219)
T 3psi_A 702 EVNKATDNNYYASALKYISGFGKRKAIDFLQSL 734 (1219)
T ss_dssp EHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHH
T ss_pred cHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 55555 6778899999999999999875
No 78
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=33.88 E-value=17 Score=31.30 Aligned_cols=16 Identities=13% Similarity=0.578 Sum_probs=14.7
Q ss_pred ccCcChHHHHHHHHhh
Q 029726 114 LKGVGPATASAVLAAY 129 (189)
Q Consensus 114 LkGVGPATASaiLa~~ 129 (189)
++||||-||.-+|.-+
T Consensus 208 VpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 208 VEGIGAKRGYNIIREF 223 (290)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCcCCHhHHHHHHHHc
Confidence 8999999999999875
No 79
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=29.11 E-value=32 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCccH
Q 029726 52 PNPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDL 104 (189)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d~ 104 (189)
..+|++..||..|-.. +.+|.-|-..-+.+.+|.+..|.++..+-|...|++
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~~~~~~P~l 66 (162)
T 3o18_A 15 QGRFLSNTELQAVDGR-FKRAVASMEAARALTNNAQSLIDGAAQAVYQKFPYT 66 (162)
T ss_dssp TTCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGG
T ss_pred cCCCCCHHHHHHHHHH-HhchHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCc
Confidence 3579999999998776 456778888899999999999999999999988863
No 80
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=29.01 E-value=27 Score=31.35 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhhCccH-HHHHHHhhcccCcChHHHHHHHH
Q 029726 85 LDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLA 127 (189)
Q Consensus 85 N~~~~V~~~t~~Af~~l~d~-~~al~~Lt~LkGVGPATASaiLa 127 (189)
-++..++.... -|..+..+ .+.++.|.+..|||+.+|..|--
T Consensus 323 l~~~iae~Lv~-~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 323 IPLSIGYNVVR-MFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CCHHHHHHHHH-HHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 34444444433 35544443 33478888899999999887743
No 81
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=28.38 E-value=36 Score=32.07 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=13.9
Q ss_pred HHHhhcccCcChHHHHHHHHh
Q 029726 108 VSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 108 l~~Lt~LkGVGPATASaiLa~ 128 (189)
.+.|..+.||||-+|..|...
T Consensus 543 ~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 543 IEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHH
Confidence 556667777777777766653
No 82
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=26.90 E-value=35 Score=28.71 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred HHHHhhcccCcChHHHHHHHHhh
Q 029726 107 AVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~~ 129 (189)
.+..|..++||+|..|.+|+..+
T Consensus 235 ~~~mL~~IpGVs~~~A~~I~~~y 257 (311)
T 2ziu_A 235 FARQLMQISGVSGDKAAAVLEHY 257 (311)
T ss_dssp HHHHHTTBTTCCHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHC
Confidence 57889999999999999999884
No 83
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=24.03 E-value=58 Score=26.88 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.9
Q ss_pred cCcChHHHHHHHHhhcCCCCCcc
Q 029726 115 KGVGPATASAVLAAYAPGVAPFM 137 (189)
Q Consensus 115 kGVGPATASaiLa~~~P~~~pFf 137 (189)
-|.+||+++++|++.|+++ |+.
T Consensus 58 ~~l~~A~~avlLTLlD~eT-plw 79 (210)
T 2fsu_A 58 QPLNIATTSVLLTLADNDT-PVW 79 (210)
T ss_dssp TTSCHHHHHHHHHHCCTTS-CEE
T ss_pred CCCCHHHHHHHHHHhCCCc-cce
Confidence 5689999999999999976 665
No 84
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=23.94 E-value=31 Score=29.93 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.6
Q ss_pred cccCcChHHHHHHHHhh
Q 029726 113 VLKGVGPATASAVLAAY 129 (189)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (189)
.++||||-||.-+|.-+
T Consensus 236 gipGiG~KtA~kll~~~ 252 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKH 252 (341)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHc
Confidence 48999999999998753
No 85
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=23.12 E-value=17 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 105 TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 105 ~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
.+.++.|+++ |||+.+|..|....
T Consensus 201 ~As~eeL~~V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 201 EATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------
T ss_pred hCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 3457889999 99999999987643
No 86
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=22.53 E-value=26 Score=32.28 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=20.1
Q ss_pred ccHHHHH--HHhhcccCcChHHHHHHHH
Q 029726 102 PDLTKAV--SELTVLKGVGPATASAVLA 127 (189)
Q Consensus 102 ~d~~~al--~~Lt~LkGVGPATASaiLa 127 (189)
.++..|+ .-|++++|||+-||--|+.
T Consensus 119 ~~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 119 EKLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 3566665 3489999999999998854
No 87
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=22.09 E-value=38 Score=28.96 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.8
Q ss_pred cccCcChHHHHHHHHhh
Q 029726 113 VLKGVGPATASAVLAAY 129 (189)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (189)
.++||||-||.-++.-+
T Consensus 239 Gv~GiG~KtA~kLl~~~ 255 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTY 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 38999999999999864
No 88
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=22.00 E-value=51 Score=25.79 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCccHHH--------HHHHhhcccCcChH--H
Q 029726 52 PNPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDLTK--------AVSELTVLKGVGPA--T 121 (189)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d~~~--------al~~Lt~LkGVGPA--T 121 (189)
..+|++..||..|-.. +..|.-|-..-+.+.+|.+.-|.++.++-|...|++.. --..-| +|-++-- -
T Consensus 15 ~gRyls~~eL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~l~~~~P~l~~~gG~~y~~~~~~~C-lRD~~~~LRy 92 (162)
T 2vml_A 15 QGRFLNNTELQAANGR-FQRATASMEAARALTSNADSLVKGAVQEVYNKFPYLTQPGQMGYGDTNQAKC-ARDISHYLRF 92 (162)
T ss_dssp TTCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSGGGGSTTSTTCSHHHHHHH-HHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCCcccHHHHHHH-HHHHHHHHHH
Confidence 3579999999998775 45677788888999999999999999999998886210 000000 1111111 0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHhhC--CCCCCCHHHHHHHHHHHHHHHH
Q 029726 122 ASAVLAAYAPGVAPFMSDEAMGAALG--HSKDYSLRQYLLFADKLQAKAK 169 (189)
Q Consensus 122 ASaiLa~~~P~~~pFfsDEa~~~~~g--~~~kYt~keY~~~~~~~~~~~~ 169 (189)
++--+-+.+| -++.|....|+-. .........|..-++.|++.+.
T Consensus 93 itYa~lagd~---~~L~e~~L~glreiy~algvp~~~~~~a~~~mk~~~~ 139 (162)
T 2vml_A 93 ITYSLVAGGT---GPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKGKVG 139 (162)
T ss_dssp HHHHHHHTSS---HHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCch---hHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 1111223455 3466666655543 2345566666666677766544
No 89
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=21.90 E-value=20 Score=34.96 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.6
Q ss_pred HHHHhhcccCcChHHHHHHHHh
Q 029726 107 AVSELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 107 al~~Lt~LkGVGPATASaiLa~ 128 (189)
....|..++||||.+|..|+.-
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~y 527 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAH 527 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhcCCCCHHHHHHHHHH
Confidence 4577889999999999999986
No 90
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.57 E-value=38 Score=29.17 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.7
Q ss_pred cccCcChHHHHHHHHhh
Q 029726 113 VLKGVGPATASAVLAAY 129 (189)
Q Consensus 113 ~LkGVGPATASaiLa~~ 129 (189)
.++||||-||--++.-+
T Consensus 238 Gv~GIG~KtA~kLi~~~ 254 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY 254 (346)
T ss_dssp CSTTCCHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHc
Confidence 48899999999999864
No 91
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.50 E-value=50 Score=31.65 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=23.6
Q ss_pred HHhhCccH-HHHHHHhhcccCcChHHHHHHHHhh
Q 029726 97 AFKSLPDL-TKAVSELTVLKGVGPATASAVLAAY 129 (189)
Q Consensus 97 Af~~l~d~-~~al~~Lt~LkGVGPATASaiLa~~ 129 (189)
.|..+..+ .+..+.|.+++||||.+|..|....
T Consensus 531 ~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 531 YFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 34444333 2346889999999999999998764
No 92
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.48 E-value=31 Score=33.32 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.2
Q ss_pred HhhcccCcChHHHHHHHHh
Q 029726 110 ELTVLKGVGPATASAVLAA 128 (189)
Q Consensus 110 ~Lt~LkGVGPATASaiLa~ 128 (189)
.++.||||||.+|.++-.+
T Consensus 116 ~~~~l~gvg~~~~~~l~~l 134 (780)
T 1gm5_A 116 DIQYAKGVGPNRKKKLKKL 134 (780)
T ss_dssp CSSSSSSCCHHHHHHHHTT
T ss_pred CchhcCCCCHHHHHHHHHC
Confidence 3567999999999877554
No 93
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=21.46 E-value=1e+02 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=19.1
Q ss_pred hhhHhhhCCHHHHHHHHHHHHhhCc
Q 029726 78 LLDFVSSLDDSSVKSASEKAFKSLP 102 (189)
Q Consensus 78 L~~lv~sN~~~~V~~~t~~Af~~l~ 102 (189)
|-..++++++..|+.+...-+..+.
T Consensus 5 LE~~L~~~~~~~~~~i~~~L~qAl~ 29 (67)
T 3ph0_A 5 LETRLSGADPVFARELHAQLVQALG 29 (67)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5567888888899998887775554
No 94
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=21.41 E-value=39 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=23.5
Q ss_pred cccCcChHHHHHHHHhh----------cCCCCCcccHHHHHHhh
Q 029726 113 VLKGVGPATASAVLAAY----------APGVAPFMSDEAMGAAL 146 (189)
Q Consensus 113 ~LkGVGPATASaiLa~~----------~P~~~pFfsDEa~~~~~ 146 (189)
-++||||-||.-+|.-+ +...+||=.+++.....
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~ 298 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFL 298 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhc
Confidence 46799999999999864 22245665567666544
No 95
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=21.17 E-value=63 Score=25.59 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCcc
Q 029726 52 PNPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPD 103 (189)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (189)
..+|++..||..|-.. +..|.-|=..-+.+.+|.+.-|.++.++-|...|+
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~Iv~~A~~~l~~~~P~ 65 (172)
T 2c7l_B 15 KGAYLSNDEINALQAI-VADSNKRLDVVNRLTSNASSIVANAYRALVAERPQ 65 (172)
T ss_dssp TTCCCCHHHHHHHHHH-HHSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCHH
T ss_pred cCCCCCHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 4689999999998775 46677788888999999999999999999998886
No 96
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=20.80 E-value=68 Score=25.39 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCcc
Q 029726 52 PNPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPD 103 (189)
Q Consensus 52 ~~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (189)
..+|++..||..|-.. +..|.-|=..-+.+.+|.+.-|.++.++-|...|+
T Consensus 15 ~gRyls~~EL~~l~~~-~~~~~~Rl~aa~~L~~na~~Iv~~A~~~l~~~~P~ 65 (172)
T 2vml_B 15 RGSFLSEQELNQLTNL-VKESNKRLDAVNAITGNAAEIISDAAHKLFAEQTD 65 (172)
T ss_dssp TTCCCCHHHHHHHHHH-HHTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGG
T ss_pred cCCCCCHHHHHHHHHH-HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcC
Confidence 3579999999998775 56677788888999999999999999999998886
No 97
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=20.78 E-value=64 Score=25.59 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCccH
Q 029726 53 NPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPDL 104 (189)
Q Consensus 53 ~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d~ 104 (189)
.+|++..||..|-.. +.+|.-|=..-+.+.+|.+..|.++..+-|...|++
T Consensus 16 gRyls~~EL~~l~~~-~~~~~~Rl~aa~~l~~na~~IV~~A~~~~~~~~P~l 66 (172)
T 3l0f_B 16 GEFLTNAQFDALSNL-VKEGNKRLDAVNRITSNASTIVANAARALFAEQPQL 66 (172)
T ss_dssp TCCCCHHHHHHHHHH-HHTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCHHHHHHHHHH-HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCC
Confidence 579999999998775 456777777788999999999999999999888853
No 98
>3v57_A Phycoerythrin alpha subunit; globin-like, photosynthesis; HET: PEB; 1.70A {Porphyridium purpureum} PDB: 3v58_A* 1eyx_A* 1b8d_A* 1lia_A* 2vjh_A* 3mwn_A*
Probab=20.65 E-value=41 Score=26.47 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCcchhhHhhhCCHHHHHHHHHHHHhhCcc
Q 029726 53 NPHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEKAFKSLPD 103 (189)
Q Consensus 53 ~~~ltkdEL~~LveWKL~rGkfRP~L~~lv~sN~~~~V~~~t~~Af~~l~d 103 (189)
.+||+..||..|-.. +.+|.-|-..-+.+.+|-...|.++.+..|+..|+
T Consensus 16 gRyls~~eL~~l~~~-~~~~~~Rl~aa~~L~~na~~IV~~A~~~~~~~~P~ 65 (164)
T 3v57_A 16 GRFPSNSDLESIQGN-IQRSAARLEAAEKLAGNHEAVVKEAGDACFAKYAY 65 (164)
T ss_dssp TCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCHHHHHHHHHH-HHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 579999999988443 46678888889999999999999999999988775
Done!