Query 029727
Match_columns 189
No_of_seqs 117 out of 831
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02434 fatty acid hydroxylas 100.0 4.2E-56 9.1E-61 368.8 17.8 188 1-188 47-234 (237)
2 KOG0539 Sphingolipid fatty aci 100.0 8.1E-50 1.8E-54 321.1 11.6 185 1-185 46-234 (240)
3 COG3000 ERG3 Sterol desaturase 99.9 3E-23 6.6E-28 176.3 13.0 142 35-187 93-240 (271)
4 PLN02869 fatty aldehyde decarb 99.7 2.4E-17 5.1E-22 151.3 10.2 135 38-185 128-277 (620)
5 PF04116 FA_hydroxylase: Fatty 99.6 3.7E-16 8.1E-21 114.8 7.3 111 41-160 1-114 (114)
6 KOG0872 Sterol C5 desaturase [ 99.5 5E-14 1.1E-18 118.2 5.0 137 35-186 126-265 (312)
7 KOG0873 C-4 sterol methyl oxid 99.4 7.8E-13 1.7E-17 111.9 9.4 136 33-184 116-260 (283)
8 PLN02601 beta-carotene hydroxy 99.0 2.5E-09 5.5E-14 90.0 10.7 119 37-170 136-270 (303)
9 KOG0874 Sphingolipid hydroxyla 99.0 5E-11 1.1E-15 97.7 0.2 140 35-184 120-266 (287)
10 PF10520 Kua-UEV1_localn: Kua- 97.6 0.00018 3.9E-09 57.9 5.8 52 129-180 96-155 (178)
11 PRK07424 bifunctional sterol d 96.4 0.01 2.2E-07 53.6 6.8 34 151-184 143-176 (406)
12 KOG3011 Ubiquitin-conjugating 96.1 0.053 1.1E-06 45.8 9.1 141 35-178 107-260 (293)
13 PLN02601 beta-carotene hydroxy 95.6 0.061 1.3E-06 46.0 7.7 81 15-97 187-276 (303)
14 PLN02434 fatty acid hydroxylas 92.1 0.78 1.7E-05 38.6 7.5 45 35-84 164-208 (237)
15 cd03512 Alkane-hydroxylase Alk 86.0 22 0.00048 30.9 15.6 30 35-65 71-100 (314)
16 PF10520 Kua-UEV1_localn: Kua- 84.6 6.1 0.00013 31.8 7.6 14 74-87 127-140 (178)
17 KOG0539 Sphingolipid fatty aci 80.6 4.1 8.9E-05 33.9 5.2 48 35-86 166-213 (240)
18 cd03509 DesA_FADS-like Fatty a 69.5 29 0.00063 29.8 7.9 42 119-160 30-86 (288)
19 COG3000 ERG3 Sterol desaturase 61.2 16 0.00036 30.9 4.8 35 121-162 96-134 (271)
20 COG3239 DesA Fatty acid desatu 57.2 51 0.0011 29.0 7.3 49 35-84 62-126 (343)
21 cd03514 CrtR_beta-carotene-hyd 52.1 67 0.0015 26.0 6.8 11 151-161 75-85 (207)
22 COG3239 DesA Fatty acid desatu 48.3 67 0.0014 28.3 6.6 34 127-160 75-124 (343)
23 cd03511 Rhizopine-oxygenase-li 47.3 1E+02 0.0022 25.9 7.5 48 35-84 43-106 (285)
24 cd03508 Delta4-sphingolipid-FA 42.9 1.6E+02 0.0035 25.3 8.1 10 75-84 99-108 (289)
25 PF10710 DUF2512: Protein of u 42.9 68 0.0015 24.6 5.1 23 39-62 90-112 (136)
26 PLN02220 delta-9 acyl-lipid de 41.5 2.4E+02 0.0052 24.5 13.9 17 152-168 243-259 (299)
27 PLN03199 delta6-acyl-lipid des 39.3 1.6E+02 0.0034 27.3 7.8 29 32-62 157-185 (485)
28 PRK07424 bifunctional sterol d 38.7 45 0.00098 30.1 4.1 30 125-161 17-46 (406)
29 cd03507 Delta12-FADS-like The 38.0 1.2E+02 0.0025 24.8 6.2 11 151-161 84-94 (222)
30 KOG1600 Fatty acid desaturase 36.3 89 0.0019 27.5 5.3 25 152-176 262-293 (321)
31 PRK11056 hypothetical protein; 35.9 1.6E+02 0.0035 22.2 6.0 44 7-50 34-81 (120)
32 cd03511 Rhizopine-oxygenase-li 35.7 1.9E+02 0.0041 24.3 7.3 40 121-161 50-105 (285)
33 PF04116 FA_hydroxylase: Fatty 35.1 1.1E+02 0.0023 21.4 5.0 44 38-82 70-114 (114)
34 PF07226 DUF1422: Protein of u 34.7 1.7E+02 0.0038 21.9 6.0 44 7-50 34-81 (117)
35 PLN02579 sphingolipid delta-4 34.5 1.8E+02 0.0038 25.5 7.0 11 151-161 126-136 (323)
36 cd03510 Rhizobitoxine-FADS-lik 33.5 1.8E+02 0.0039 22.8 6.4 11 151-161 73-83 (175)
37 cd03512 Alkane-hydroxylase Alk 30.5 1.8E+02 0.004 25.2 6.5 50 35-84 206-273 (314)
38 PLN02598 omega-6 fatty acid de 30.3 1.8E+02 0.0038 26.6 6.5 11 151-161 176-186 (421)
39 COG5349 Uncharacterized protei 30.1 51 0.0011 25.0 2.5 30 2-31 79-108 (126)
40 cd03513 CrtW_beta-carotene-ket 29.5 3.3E+02 0.0071 22.5 7.8 11 74-84 86-96 (225)
41 KOG4232 Delta 6-fatty acid des 28.8 1.7E+02 0.0037 26.8 6.1 27 150-176 194-226 (430)
42 cd03508 Delta4-sphingolipid-FA 27.6 3.4E+02 0.0073 23.3 7.6 11 151-161 97-107 (289)
43 PF00487 FA_desaturase: Fatty 26.7 1.2E+02 0.0025 23.7 4.3 10 152-161 58-67 (257)
44 cd01060 Membrane-FADS-like The 24.8 1.3E+02 0.0028 21.2 3.9 11 151-161 52-62 (122)
45 KOG4783 Uncharacterized conser 24.0 2.9E+02 0.0063 20.1 5.7 19 10-28 34-52 (102)
46 cd03507 Delta12-FADS-like The 23.4 4.1E+02 0.0088 21.6 7.0 12 74-85 85-96 (222)
47 cd03513 CrtW_beta-carotene-ket 22.7 3.4E+02 0.0074 22.4 6.5 11 151-161 85-95 (225)
48 cd03506 Delta6-FADS-like The D 20.9 1.5E+02 0.0032 23.6 3.9 11 151-161 51-61 (204)
No 1
>PLN02434 fatty acid hydroxylase
Probab=100.00 E-value=4.2e-56 Score=368.78 Aligned_cols=188 Identities=68% Similarity=1.329 Sum_probs=177.4
Q ss_pred CCCCcCccchhhhHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCc
Q 029727 1 MEFLTRTKWWVIPLVWLPVVCWSVSKSVKMGLAPYLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCH 80 (189)
Q Consensus 1 ~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~H 80 (189)
||+||||+||++|++|+|+++++++.|.+.+.+....++.+++|+++|++.||.+||++||.+++++++++++++.|++|
T Consensus 47 lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~~~~~~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~H 126 (237)
T PLN02434 47 LEFLTRTVWWAVPLIWLPVVCWCLVKSVRMGLPLSAVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCH 126 (237)
T ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHh
Confidence 69999999999999999999999999998777777888999999999999999999999999998889999999999999
Q ss_pred ccCCCCCCccccchhHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHhhhhhHhhhccCC
Q 029727 81 HKHPMDGLRLVFPPAGAALVSLALWNLIDVLTKPFITPALYGGILLGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHF 160 (189)
Q Consensus 81 H~~p~d~~rl~~~P~~~~l~~~~~~~~~~~l~~~~~a~~~~~g~~~gyl~Y~~~H~~~H~~~~~~~~~~~~~~~H~~HH~ 160 (189)
|+.|+|..|+++||..+++++.+++.++.++++.+.+.++++|+++||++||++||.+|+.+|++++.|.+|++|+.||+
T Consensus 127 H~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHf 206 (237)
T PLN02434 127 HKHPMDGLRLVFPPAATAILCVPFWNLIALFATPATAPALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHF 206 (237)
T ss_pred hcCCCCCCCeecCcHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC
Confidence 99999999999999998788889998888888888899999999999999999999999999988999999999999999
Q ss_pred CCCCCCcccchhhHhhhcCCCCCCCcCC
Q 029727 161 RIRDKGFGISSSLWDIVFGTLPPAKAAK 188 (189)
Q Consensus 161 ~~~~~NfGvt~~~wDrlFGT~~~~~~~~ 188 (189)
+|+++|||||+++|||+|||++++++.+
T Consensus 207 k~~~~~fGVTs~~wD~vFGT~~~~~~~~ 234 (237)
T PLN02434 207 RDQDKGFGITSSLWDRVFGTLPPSKAAK 234 (237)
T ss_pred CCCCCCCCcCchHHHHhcCCCCCcchhh
Confidence 9999999999999999999998876654
No 2
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-50 Score=321.13 Aligned_cols=185 Identities=52% Similarity=1.033 Sum_probs=169.4
Q ss_pred CCCCcCccchhhhHHHHHHHHHH-HHhhhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc--ccchhhHHHHHhhh
Q 029727 1 MEFLTRTKWWVIPLVWLPVVCWS-VSKSVKMGLAPYLAGLIVFLGIITWTLLEYFLHRYLFHIK--TKSYWGNTFHYLIH 77 (189)
Q Consensus 1 ~e~~t~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~d~~eY~~HR~l~H~~--~~~~~~~~~~~~~H 77 (189)
+|.||||.||++|++|+|++++. ...+...+.+.+.+...|++|+++|++.||.+||++||.+ +++.+.+.+++.+|
T Consensus 46 lE~lTkT~Ww~VP~iWlPvVvy~~~~~t~~~~~s~~~~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~H 125 (240)
T KOG0539|consen 46 LEPLTKTVWWVVPLIWLPVVVYGFLSFTTSYNDSVPVFSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIH 125 (240)
T ss_pred HHHhhcchhheehhhhhhhhhheeeeecccccchhhhhhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHh
Confidence 69999999999999999999993 3333344455566778999999999999999999999998 45789999999999
Q ss_pred cCcccCCCCCCccccchhHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhhcCCCCh-hHhhhhhHhhh
Q 029727 78 GCHHKHPMDGLRLVFPPAGAALVSLALWNLIDVLTKPFITPALYGGILLGYVMYDVTHYYTHHGKPSK-GIILRLKRFHM 156 (189)
Q Consensus 78 ~~HH~~p~d~~rl~~~P~~~~l~~~~~~~~~~~l~~~~~a~~~~~g~~~gyl~Y~~~H~~~H~~~~~~-~~~~~~~~~H~ 156 (189)
+.||+.|+|..|++|||...+++++|+|.++.++++.+.+.+.++|.++||+.||.+||.+|+++|++ ++++.+|+.|.
T Consensus 126 GcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~vl~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~~~~~~~lK~yHl 205 (240)
T KOG0539|consen 126 GCHHKLPMDGYRLVFPPTPFAILAAPFYLILSLVLPHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPKRPYLKHLKKYHL 205 (240)
T ss_pred cccccCCCCCceEecCCchHHHHHHHHHHHHHHhcCcchhhhhhccchhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999999999999999998854 88999999999
Q ss_pred ccCCCCCCCCcccchhhHhhhcCCCCCCC
Q 029727 157 NHHFRIRDKGFGISSSLWDIVFGTLPPAK 185 (189)
Q Consensus 157 ~HH~~~~~~NfGvt~~~wDrlFGT~~~~~ 185 (189)
-||+++++.+||+|+++||++|||..+.+
T Consensus 206 ~HHfk~q~~GfGItS~lWD~VFgTl~~~~ 234 (240)
T KOG0539|consen 206 NHHFKHQDLGFGITSSLWDYVFGTLGPLK 234 (240)
T ss_pred hhhhhccccCccccHHHHHHHhccCCCCc
Confidence 99999999999999999999999998765
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.90 E-value=3e-23 Score=176.26 Aligned_cols=142 Identities=23% Similarity=0.311 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCCCCC--CccccchhHHHHHHHHHHHHHHHhh
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMDG--LRLVFPPAGAALVSLALWNLIDVLT 112 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p~d~--~rl~~~P~~~~l~~~~~~~~~~~l~ 112 (189)
...++..++++++.|+..||.|| ++|+.+ ++|++|++||.++.+. ..+.++|.|.++...... +...+.
T Consensus 93 ~~~~l~~~~~~~~~D~~~Y~~HR-~~H~~~-------~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~-~~~~l~ 163 (271)
T COG3000 93 LPFALQLLLAFLFLDLGYYWAHR-LLHRVP-------LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGL-LPLLLL 163 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhhH-------HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHH-HHHHHh
Confidence 45578889999999999999999 789875 4899999999987542 347789999765543332 233334
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHh---hhhhHhhhccCCCC-CCCCcccchhhHhhhcCCCCCCCcC
Q 029727 113 KPFITPALYGGILLGYVMYDVTHYYTHHGKPSKGII---LRLKRFHMNHHFRI-RDKGFGISSSLWDIVFGTLPPAKAA 187 (189)
Q Consensus 113 ~~~~a~~~~~g~~~gyl~Y~~~H~~~H~~~~~~~~~---~~~~~~H~~HH~~~-~~~NfGvt~~~wDrlFGT~~~~~~~ 187 (189)
|.+ ..+.....++.+..+...|+..+.+ .+.++. ...+++|+.||.++ .|+|||.++++|||+|||+.+++++
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~ 240 (271)
T COG3000 164 GLS-PVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDER 240 (271)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCccc
Confidence 432 2333444556667777788877654 222333 46799999999999 6899999999999999999866443
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.72 E-value=2.4e-17 Score=151.33 Aligned_cols=135 Identities=18% Similarity=0.303 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCCC-CCCccccchhH-HHHHHHHHHHHH-HHhhch
Q 029727 38 GLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPM-DGLRLVFPPAG-AALVSLALWNLI-DVLTKP 114 (189)
Q Consensus 38 ~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p~-d~~rl~~~P~~-~~l~~~~~~~~~-~~l~~~ 114 (189)
+..+++-+...|+..||+|| ++|+.+ ++|+.|++||++.. +..+..++|++ .+...+.+...+ ..++..
T Consensus 128 l~~~Llhv~~~Df~fYW~HR-llH~~~-------LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g 199 (620)
T PLN02869 128 LITILLHMGPVEFLYYWLHR-ALHHHY-------LYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTG 199 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHH-------HHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455555568999999999 689753 48999999999842 33444467764 222222221111 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHh-hhhhhcC-C--C--------ChhHhhhhhHhhhccCCCCCCCCcccchhhHhhhcCCCC
Q 029727 115 FITPALYGGILLGYVMYDVT-HYYTHHG-K--P--------SKGIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLP 182 (189)
Q Consensus 115 ~~a~~~~~g~~~gyl~Y~~~-H~~~H~~-~--~--------~~~~~~~~~~~H~~HH~~~~~~NfGvt~~~wDrlFGT~~ 182 (189)
.... ..+.+++.|... -...|.+ + | ..+++...+++|+.||.+ .++|||..+++|||+|||+.
T Consensus 200 ~~hi----~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd~NYGlfF~~WDrLFGT~d 274 (620)
T PLN02869 200 TASI----AAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTMD 274 (620)
T ss_pred cchH----HHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhcc-CCcCcccchHHHHhccCCCC
Confidence 1111 122333433322 1123333 1 1 123344578999999965 69999999999999999997
Q ss_pred CCC
Q 029727 183 PAK 185 (189)
Q Consensus 183 ~~~ 185 (189)
++.
T Consensus 275 ~~s 277 (620)
T PLN02869 275 KSS 277 (620)
T ss_pred CCc
Confidence 643
No 5
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.65 E-value=3.7e-16 Score=114.80 Aligned_cols=111 Identities=33% Similarity=0.490 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccC--CCCCCccccchhHHHHHHHHHHHHHHHhhchhhHH
Q 029727 41 VFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDVLTKPFITP 118 (189)
Q Consensus 41 ~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~--p~d~~rl~~~P~~~~l~~~~~~~~~~~l~~~~~a~ 118 (189)
|+++++++|+.||++|| ++|+.+. +|+.|+.||+. |.......++|+|.++...+...+ ..+.+...+.
T Consensus 1 f~~~~l~~d~~~Y~~HR-l~H~~~~-------l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (114)
T PF04116_consen 1 FLLGFLLWDFWEYWMHR-LLHKIPF-------LWRIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLL-PLLLLPFHAL 71 (114)
T ss_pred CeeeHHHHHHHHHHHHH-HHhcCch-------HHHHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHH-HHHHHhHhHH
Confidence 36788999999999999 8996553 67999999975 322334668888876544333222 2233334456
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC-CCChhHhhhhhHhhhccCC
Q 029727 119 ALYGGILLGYVMYDVTHYYTHHG-KPSKGIILRLKRFHMNHHF 160 (189)
Q Consensus 119 ~~~~g~~~gyl~Y~~~H~~~H~~-~~~~~~~~~~~~~H~~HH~ 160 (189)
.+.++++.+++.|++.|+..+.. .++.++++.++++|+.||+
T Consensus 72 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 72 AFLLGIALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 67788889999999999988443 3455788899999999994
No 6
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.46 E-value=5e-14 Score=118.20 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCC--CCCCccccchhHHHHHHHHHHHHHHHhh
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHP--MDGLRLVFPPAGAALVSLALWNLIDVLT 112 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p--~d~~rl~~~P~~~~l~~~~~~~~~~~l~ 112 (189)
...+...++-+++.|+..||.||. +|.++ ++|+.|+.||... +.-.++.|+|+-.++.+.| +.+..++.
T Consensus 126 ~~~~~~i~~flfF~Df~iYw~HR~-lH~~~-------vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip-~~I~~Fi~ 196 (312)
T KOG0872|consen 126 FLLFVSIFLFLFFTDFGIYWAHRE-LHHRG-------VYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIP-YHIYPFIF 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhH-------HHhhhcchhhhhhccCchhhhhcCcchhHhhhch-hHheeeee
Confidence 455556666688999999999996 57654 4789999999753 2223578999887665543 23333444
Q ss_pred chhhHHHHHHHHH-HHHHHHHHhhhhhhcCCCChhHhhhhhHhhhccCCCCCCCCcccchhhHhhhcCCCCCCCc
Q 029727 113 KPFITPALYGGIL-LGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPPAKA 186 (189)
Q Consensus 113 ~~~~a~~~~~g~~-~gyl~Y~~~H~~~H~~~~~~~~~~~~~~~H~~HH~~~~~~NfGvt~~~wDrlFGT~~~~~~ 186 (189)
|..... ..+.. +.-..-..+|...+.+ ..+.-..+.+|..||-. .|+|||-.+.+|||+|||++.|..
T Consensus 197 Plh~~t--~L~l~~f~~iwt~~IHd~~~~~---l~~~ingaahHtvHH~~-f~~NYG~~tilwDrmfgSfr~p~~ 265 (312)
T KOG0872|consen 197 PLHKVT--YLSLFTFVNIWTISIHDGIYGS---LNPPINGAAHHTVHHTY-FDYNYGQYTILWDRMFGSFRAPDH 265 (312)
T ss_pred cchHHH--HHHHHHHHHhHheeeecccccc---ccCccccccccceeeee-EecCCCcEEEeHHhccCcccCccc
Confidence 422111 11111 1111111356555544 12235567899999966 799999999999999999987654
No 7
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.42 E-value=7.8e-13 Score=111.90 Aligned_cols=136 Identities=19% Similarity=0.108 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccC--CCCCCccccchhHHHHHHHHHHHHHHH
Q 029727 33 APYLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDV 110 (189)
Q Consensus 33 ~~~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~--p~d~~rl~~~P~~~~l~~~~~~~~~~~ 110 (189)
+....+.-.++.+++.|+..||.|| ++|.+. +++.+|++||.. |....+...+|.|.+..+++......+
T Consensus 116 t~~~~l~~l~i~~liEd~~fY~~HR-L~H~~~-------~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~p~~ 187 (283)
T KOG0873|consen 116 SWKEMLAQLVVFFLIEDIGFYWSHR-LFHHKW-------LYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMGPAL 187 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH-------HHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhhhHH
Confidence 3456778889999999999999999 788432 367899999974 544455668999976554433222222
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHhhhhh-hcC-CCChhHh-----hhhhHhhhccCCCCCCCCcccchhhHhhhcCCCCC
Q 029727 111 LTKPFITPALYGGILLGYVMYDVTHYYT-HHG-KPSKGII-----LRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 183 (189)
Q Consensus 111 l~~~~~a~~~~~g~~~gyl~Y~~~H~~~-H~~-~~~~~~~-----~~~~~~H~~HH~~~~~~NfGvt~~~wDrlFGT~~~ 183 (189)
+.+--+..-+.. .....++.. |.+ +.+..-- ..-.++|+.||.. ..+||.-++..|||++||.+.
T Consensus 188 ~~~H~~t~wiw~-------~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~-f~~n~~~~f~~~D~i~GTd~~ 259 (283)
T KOG0873|consen 188 LCGHVITLWIWI-------ALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLV-FIGNFASVFGYLDRIHGTDST 259 (283)
T ss_pred hhhHHHHHHHHH-------HHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhh-ccccccchhHHHHHHhccCcc
Confidence 222111110100 111122222 333 2221111 2245899999966 488999999999999999974
Q ss_pred C
Q 029727 184 A 184 (189)
Q Consensus 184 ~ 184 (189)
.
T Consensus 260 ~ 260 (283)
T KOG0873|consen 260 Y 260 (283)
T ss_pred H
Confidence 3
No 8
>PLN02601 beta-carotene hydroxylase
Probab=99.03 E-value=2.5e-09 Score=89.95 Aligned_cols=119 Identities=17% Similarity=0.181 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCC------CCCCccccchhHHHHHHHHHHHHHHH
Q 029727 37 AGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHP------MDGLRLVFPPAGAALVSLALWNLIDV 110 (189)
Q Consensus 37 ~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p------~d~~rl~~~P~~~~l~~~~~~~~~~~ 110 (189)
.++.++.+++.+.++-+|.||+++|.. +|..|+.||+.. +|...+++- +++..+.. +..
T Consensus 136 ~~al~lgtfvgMEf~Aw~aHKYvMHG~---------LW~lH~sHH~Pr~g~FE~NDlFaVifA-----vpAIaL~~-~G~ 200 (303)
T PLN02601 136 TFALSVGAAVGMEFWARWAHRALWHDS---------LWNMHESHHKPREGAFELNDVFAIVNA-----VPAIGLLY-YGF 200 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---------chhhhhhcCCCCCCCcccccchhhhhH-----HHHHHHHH-Hhh
Confidence 334567778888999999999999985 578999999643 222222221 11111111 011
Q ss_pred h-hchh--hHHHHHHHHHHHHHHHHHhhhh-hhcC-----CCChhHhhhhhHhhhccCCC-CCCCCcccc
Q 029727 111 L-TKPF--ITPALYGGILLGYVMYDVTHYY-THHG-----KPSKGIILRLKRFHMNHHFR-IRDKGFGIS 170 (189)
Q Consensus 111 l-~~~~--~a~~~~~g~~~gyl~Y~~~H~~-~H~~-----~~~~~~~~~~~~~H~~HH~~-~~~~NfGvt 170 (189)
. -+.. ....+.+|+.+..+.|-++|.. +|.. .++.+|+|++++-|++||.. +...+||.-
T Consensus 201 ~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfl 270 (303)
T PLN02601 201 FNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLF 270 (303)
T ss_pred ccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEE
Confidence 1 1111 2234567788888899999985 4654 24569999999999999972 223577754
No 9
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.02 E-value=5e-11 Score=97.66 Aligned_cols=140 Identities=20% Similarity=0.220 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccC--CCCCCccccchhHHHHHHHHHHHHHHHhh
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDVLT 112 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~--p~d~~rl~~~P~~~~l~~~~~~~~~~~l~ 112 (189)
......+++++++-|.++|++|| .||... .+++.+|.+||+- |..--.+.=+|+|.++.-..-..+..++.
T Consensus 120 ~v~A~q~f~aflviDtWQYF~HR-ymH~NK------~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~s 192 (287)
T KOG0874|consen 120 LVLARQFFAAFLVIDTWQYFLHR-YMHMNK------FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLS 192 (287)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HHHHHH------HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHc
Confidence 34456788999999999999999 579754 3577899999973 54333466679887543211001111111
Q ss_pred chhh--HHHHHHHHHHHHHHHHHhhhhhhcC-CCChhHhhhhhHhhhccCCC-CCCCCcccch-hhHhhhcCCCCCC
Q 029727 113 KPFI--TPALYGGILLGYVMYDVTHYYTHHG-KPSKGIILRLKRFHMNHHFR-IRDKGFGISS-SLWDIVFGTLPPA 184 (189)
Q Consensus 113 ~~~~--a~~~~~g~~~gyl~Y~~~H~~~H~~-~~~~~~~~~~~~~H~~HH~~-~~~~NfGvt~-~~wDrlFGT~~~~ 184 (189)
|.+. +.+++. +...=.+ --||-.=.+ +|-..++.+-.+.|+.||-. ..++||.--+ .+|||++||+.|.
T Consensus 193 glspr~aiifFt-faTiKTV--DDHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~ 266 (287)
T KOG0874|consen 193 GLSPRTAIIFFT-FATIKTV--DDHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPY 266 (287)
T ss_pred CCCccceEEEEE-eeeeeee--ccccccccCCCceeEeccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCc
Confidence 1111 111000 0000000 011111111 23234456667899999954 4578887654 7999999999764
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=97.55 E-value=0.00018 Score=57.87 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=38.1
Q ss_pred HHHHHhhhhhhcCCCChhH---hhh-----hhHhhhccCCCCCCCCcccchhhHhhhcCC
Q 029727 129 VMYDVTHYYTHHGKPSKGI---ILR-----LKRFHMNHHFRIRDKGFGISSSLWDIVFGT 180 (189)
Q Consensus 129 l~Y~~~H~~~H~~~~~~~~---~~~-----~~~~H~~HH~~~~~~NfGvt~~~wDrlFGT 180 (189)
.+-+.+|-..|..+.+.++ ++. -|++|+.||....|.||-+++-+||.++..
T Consensus 96 ~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~ 155 (178)
T PF10520_consen 96 AFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDK 155 (178)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcccCCeEeecccchHHHHH
Confidence 4555678888885323333 333 279999999887899999999999987643
No 11
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.38 E-value=0.01 Score=53.58 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.2
Q ss_pred hhHhhhccCCCCCCCCcccchhhHhhhcCCCCCC
Q 029727 151 LKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPPA 184 (189)
Q Consensus 151 ~~~~H~~HH~~~~~~NfGvt~~~wDrlFGT~~~~ 184 (189)
-|.+|-.||+.|.+.-|+.++++-|+..||...-
T Consensus 143 ~~~~h~rh~~~~~~~~~~~~~~~~d~~~~ta~sl 176 (406)
T PRK07424 143 NRPYHWRHHFDNQNAYYCGTFTLVDKLMGTALSL 176 (406)
T ss_pred cCceeEEEEeccccceeeeeEEEeehhcCcccCC
Confidence 3589999999998899999999999999997643
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.053 Score=45.81 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccc--c-hhhHHHHHhhhcCcccCCCCCCccccchhHHHH-HHHHHHH-HHH
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK--S-YWGNTFHYLIHGCHHKHPMDGLRLVFPPAGAAL-VSLALWN-LID 109 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~--~-~~~~~~~~~~H~~HH~~p~d~~rl~~~P~~~~l-~~~~~~~-~~~ 109 (189)
....++.++|+++.||..=++|=. --.... . ..++++. + -+.||++|..-.|--|--..-++ .+.-+.. ...
T Consensus 107 ~~~~La~~aG~i~AD~~SGl~HWa-aD~~Gsv~tP~vG~~f~-r-freHH~dP~tITr~~f~~~~~ll~~a~~f~v~~~d 183 (293)
T KOG3011|consen 107 LEPALAAYAGYITADLGSGVYHWA-ADNYGSVSTPWVGRQFE-R-FQEHHKDPWTITRRQFANNLHLLARAYTFIVLPLD 183 (293)
T ss_pred HHHHHHHHHHHHHHhhhcceeEee-ccccCccccchhHHHHH-H-HHhccCCcceeeHHHHhhhhHHHHHhheeEecCHH
Confidence 455678889999999987655531 111111 1 1244333 3 78999999654442221111001 0111100 011
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHhhhhhhcC-C-CCh-hHhhh-----hhHhhhccCCCCCCCCcccchhhHhhhc
Q 029727 110 VLTKPFITPALYGGILLGYVMYDVTHYYTHHG-K-PSK-GIILR-----LKRFHMNHHFRIRDKGFGISSSLWDIVF 178 (189)
Q Consensus 110 ~l~~~~~a~~~~~g~~~gyl~Y~~~H~~~H~~-~-~~~-~~~~~-----~~~~H~~HH~~~~~~NfGvt~~~wDrlF 178 (189)
++.....--.+...+.+..++-+-+|-..|.- . |+. -.++. .|+||+.||....+.||-+++-+|.++.
T Consensus 184 ~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~L 260 (293)
T KOG3011|consen 184 LAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWVL 260 (293)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCccccceEEeechhhchH
Confidence 11111111111122222224445577777754 2 322 11222 2789999998888999999999987753
No 13
>PLN02601 beta-carotene hydroxylase
Probab=95.62 E-value=0.061 Score=45.96 Aligned_cols=81 Identities=20% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhhh-cCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc------chhhHHHHHhhhcCcccCCCCC
Q 029727 15 VWLPVVCWSVSKSVK-MGLAPYLAGLIVFLGIITWTLLEYFLHRYLFHIKTK------SYWGNTFHYLIHGCHHKHPMDG 87 (189)
Q Consensus 15 ~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~------~~~~~~~~~~~H~~HH~~p~d~ 87 (189)
++..+.+.+++.|.. .+.. +...+...+|+.++.+.+.++|-.+.|++-+ +++. +-+.+.|+.||+...+.
T Consensus 187 ifAvpAIaL~~~G~~~~g~~-p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~-rrl~~AHklHHa~Ke~G 264 (303)
T PLN02601 187 VNAVPAIGLLYYGFFNKGLV-PGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYL-RKVAAAHQLHHTDKFKG 264 (303)
T ss_pred hhHHHHHHHHHHhhcccccc-HHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHH-HHHHHHHHhhccCCcCC
Confidence 445566666666664 3333 2233567899999999999999999999843 2222 33458899999855443
Q ss_pred --CccccchhHH
Q 029727 88 --LRLVFPPAGA 97 (189)
Q Consensus 88 --~rl~~~P~~~ 97 (189)
..+.+.|.+.
T Consensus 265 v~FGfll~P~e~ 276 (303)
T PLN02601 265 VPYGLFLGPKEV 276 (303)
T ss_pred ccceEEeccHHH
Confidence 3455666664
No 14
>PLN02434 fatty acid hydroxylase
Probab=92.11 E-value=0.78 Score=38.60 Aligned_cols=45 Identities=20% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCC
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHP 84 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p 84 (189)
.......++|.+++|..-|.+|. .++.+++ .+-+|+.|..||...
T Consensus 164 ~~~~~G~l~gYl~Yd~~Hy~lH~----~~p~~~~-~r~lkr~H~~HHfk~ 208 (237)
T PLN02434 164 PALFGGGLLGYVMYDCTHYFLHH----GQPSTDV-LRNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCcchHH-HHHHHHHHHHHcCCC
Confidence 45556788999999999999996 2343333 346899999999653
No 15
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=86.04 E-value=22 Score=30.90 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK 65 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~ 65 (189)
..+.+.+.+|++......=..|. ..|+.++
T Consensus 71 ~~~~~~~~~G~~~g~i~~~~aHe-l~Hr~~~ 100 (314)
T cd03512 71 EKVGLILSLGLLSGVIGINTAHE-LIHRRSR 100 (314)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHh-ccCCCCh
Confidence 34445566666665454557788 6787654
No 16
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=84.60 E-value=6.1 Score=31.85 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.0
Q ss_pred HhhhcCcccCCCCC
Q 029727 74 YLIHGCHHKHPMDG 87 (189)
Q Consensus 74 ~~~H~~HH~~p~d~ 87 (189)
.+.|+.||+.|.|.
T Consensus 127 r~~H~~HH~aPh~~ 140 (178)
T PF10520_consen 127 RKHHRIHHVAPHDT 140 (178)
T ss_pred chhhhccccCcccC
Confidence 58899999999774
No 17
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=80.59 E-value=4.1 Score=33.86 Aligned_cols=48 Identities=21% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHhhhcCcccCCCC
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMD 86 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~~~~~~~~~~~~H~~HH~~p~d 86 (189)
......-++|.+++|...|.+| |..++++....-+++-|-.||-.-.|
T Consensus 166 ~a~faG~l~GYV~YDmtHYyLH----hg~p~~~~~~~~lK~yHl~HHfk~q~ 213 (240)
T KOG0539|consen 166 PAGFAGGLLGYVCYDMTHYYLH----HGSPPKRPYLKHLKKYHLNHHFKHQD 213 (240)
T ss_pred hhhhccchhhhhhhhhhhhhhh----cCCCCCchHHHHHHHHHhhhhhhccc
Confidence 3444566889999999888776 66664434456688999999976555
No 18
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=69.49 E-value=29 Score=29.81 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCChhHh---------------hhhhHhhhccCC
Q 029727 119 ALYGGILLGYVMYDVTHYYTHHGKPSKGII---------------LRLKRFHMNHHF 160 (189)
Q Consensus 119 ~~~~g~~~gyl~Y~~~H~~~H~~~~~~~~~---------------~~~~~~H~~HH~ 160 (189)
...++++++...+...|-+.|..-.++++. ...+..|..||.
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~~~l~~p~~~wr~~H~~HH~ 86 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPPLALWYPYTRYRDTHLAHHR 86 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 334444555555677888888763222111 234678899995
No 19
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=61.20 E-value=16 Score=30.91 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH----HhhhhhhcCCCChhHhhhhhHhhhccCCCC
Q 029727 121 YGGILLGYVMYD----VTHYYTHHGKPSKGIILRLKRFHMNHHFRI 162 (189)
Q Consensus 121 ~~g~~~gyl~Y~----~~H~~~H~~~~~~~~~~~~~~~H~~HH~~~ 162 (189)
.....++.++.| +.|-..|.+ +..++.|..||...
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H~~-------~~~w~~H~~HH~~~ 134 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLHRV-------PLLWAFHKVHHSSE 134 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhhcCcc
Confidence 333444444555 445555544 44568999999653
No 20
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=57.22 E-value=51 Score=29.01 Aligned_cols=49 Identities=29% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccc-chhhH--------------HHHHhh-hcCcccCC
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK-SYWGN--------------TFHYLI-HGCHHKHP 84 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~-~~~~~--------------~~~~~~-H~~HH~~p 84 (189)
...+++++.+-++....+=..|- ..|.... +++.+ ...||. |-.||.+.
T Consensus 62 ~~~~l~~~~~~~~l~~~~~v~Hd-~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t 126 (343)
T COG3239 62 WLLPLALLLAGLLLTGLFSVGHD-CGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHT 126 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-ccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhccc
Confidence 34444555555445566778888 5787321 11221 233666 99999865
No 21
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=52.12 E-value=67 Score=25.99 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=8.7
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.++.|..||..
T Consensus 75 w~~~H~~HH~~ 85 (207)
T cd03514 75 FRRVHMQHHAH 85 (207)
T ss_pred HHHHHHHHhcC
Confidence 47899999964
No 22
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=48.34 E-value=67 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhcCCCChhHhh----------------hhhHhhhccCC
Q 029727 127 GYVMYDVTHYYTHHGKPSKGIIL----------------RLKRFHMNHHF 160 (189)
Q Consensus 127 gyl~Y~~~H~~~H~~~~~~~~~~----------------~~~~~H~~HH~ 160 (189)
.....+..|-+.|-.-.++++++ ..|..|..||.
T Consensus 75 l~~~~~v~Hd~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~ 124 (343)
T COG3239 75 LTGLFSVGHDCGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHA 124 (343)
T ss_pred HHHHHhhhhhccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhc
Confidence 33455567888877533322222 23567999995
No 23
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=47.33 E-value=1e+02 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccc-chhhH---------------HHHHhhhcCcccCC
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK-SYWGN---------------TFHYLIHGCHHKHP 84 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~-~~~~~---------------~~~~~~H~~HH~~p 84 (189)
...++.+++|.+...+. =..|- ..|..-. +++.+ ......|..||+.+
T Consensus 43 ~~~~~~~~~g~~~~~~~-~~~He-~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~ 106 (285)
T cd03511 43 WALPAFLVYGVLYAALF-ARWHE-CVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYT 106 (285)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH-hhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCc
Confidence 44445566666655332 25677 3565421 11111 12246699999865
No 24
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=42.94 E-value=1.6e+02 Score=25.28 Aligned_cols=10 Identities=30% Similarity=0.202 Sum_probs=8.0
Q ss_pred hhhcCcccCC
Q 029727 75 LIHGCHHKHP 84 (189)
Q Consensus 75 ~~H~~HH~~p 84 (189)
+.|..||+.+
T Consensus 99 ~~H~~HH~~~ 108 (289)
T cd03508 99 KYHLEHHRYL 108 (289)
T ss_pred HHHHHhccCC
Confidence 4799999865
No 25
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=42.93 E-value=68 Score=24.63 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 029727 39 LIVFLGIITWTLLEYFLHRYLFHI 62 (189)
Q Consensus 39 ~~~~~g~~~~d~~eY~~HR~l~H~ 62 (189)
.+++.++ +-...||+.|||+.-+
T Consensus 90 ~allsA~-~i~v~E~fFH~yl~~~ 112 (136)
T PF10710_consen 90 AALLSAV-LIGVGEYFFHRYLLRN 112 (136)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHc
Confidence 3444443 4477899999986433
No 26
>PLN02220 delta-9 acyl-lipid desaturase
Probab=41.52 E-value=2.4e+02 Score=24.55 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=11.6
Q ss_pred hHhhhccCCCCCCCCcc
Q 029727 152 KRFHMNHHFRIRDKGFG 168 (189)
Q Consensus 152 ~~~H~~HH~~~~~~NfG 168 (189)
-..|+-||.-..+.++|
T Consensus 243 EgwHNnHHafP~sar~G 259 (299)
T PLN02220 243 ESWHNNHHAFESSARQG 259 (299)
T ss_pred ccccccccCCccchhhC
Confidence 36999999654455555
No 27
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=39.34 E-value=1.6e+02 Score=27.29 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 029727 32 LAPYLAGLIVFLGIITWTLLEYFLHRYLFHI 62 (189)
Q Consensus 32 ~~~~~~~~~~~~g~~~~d~~eY~~HR~l~H~ 62 (189)
.+...++..+++|+...-+. .+.|-. -|.
T Consensus 157 ~~~~~~l~aillg~~~~~~g-~l~HDa-~H~ 185 (485)
T PLN03199 157 RFAMHIASALLLGLFFQQCG-WLAHDF-LHH 185 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHhh-hhh
Confidence 33345667777777777766 588884 463
No 28
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=38.66 E-value=45 Score=30.12 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhhcCCCChhHhhhhhHhhhccCCC
Q 029727 125 LLGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFR 161 (189)
Q Consensus 125 ~~gyl~Y~~~H~~~H~~~~~~~~~~~~~~~H~~HH~~ 161 (189)
+..=++.|..|+..|..+ ++.|.|.+||..
T Consensus 17 ~~~~~~~d~~h~~~h~~~-------~l~~~h~~hh~~ 46 (406)
T PRK07424 17 LWVEIVRDSYHALAHQWN-------PLYRLHNWHHRV 46 (406)
T ss_pred HHHHHHHHHHHHHHhhch-------HHHHHHHhHHhh
Confidence 334467788899999773 778899999953
No 29
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=37.95 E-value=1.2e+02 Score=24.84 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=8.6
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.|+.|..||..
T Consensus 84 w~~~H~~HH~~ 94 (222)
T cd03507 84 WRISHNRHHAH 94 (222)
T ss_pred HHHHHHHHHhc
Confidence 37889999964
No 30
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=36.31 E-value=89 Score=27.55 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=16.5
Q ss_pred hHhhhccCCCC-------CCCCcccchhhHhh
Q 029727 152 KRFHMNHHFRI-------RDKGFGISSSLWDI 176 (189)
Q Consensus 152 ~~~H~~HH~~~-------~~~NfGvt~~~wDr 176 (189)
-.-|+-||.-. +.+-++.|..+.|-
T Consensus 262 EgwHNyHH~Fp~dyr~ge~~y~~d~T~~~I~~ 293 (321)
T KOG1600|consen 262 EGWHNYHHAFPWDYRHGEEWYQLDITWYLIDF 293 (321)
T ss_pred cccccccccCchhhHhhhHHhhhCcchHHHHH
Confidence 46899999632 23556777777764
No 31
>PRK11056 hypothetical protein; Provisional
Probab=35.94 E-value=1.6e+02 Score=22.19 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=19.7
Q ss_pred ccchhhhHHHHHHHHHHHHhhhh----cCchhHHHHHHHHHHHHHHHH
Q 029727 7 TKWWVIPLVWLPVVCWSVSKSVK----MGLAPYLAGLIVFLGIITWTL 50 (189)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~d~ 50 (189)
+++.+-|++=+...+|+++.-.. ....+....++|++|++.++.
T Consensus 34 VpFSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (120)
T PRK11056 34 VPFSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSA 81 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 44444444444444444444321 112224444556666555443
No 32
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=35.68 E-value=1.9e+02 Score=24.29 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCh----hHh------------hhhhHhhhccCCC
Q 029727 121 YGGILLGYVMYDVTHYYTHHGKPSK----GII------------LRLKRFHMNHHFR 161 (189)
Q Consensus 121 ~~g~~~gyl~Y~~~H~~~H~~~~~~----~~~------------~~~~~~H~~HH~~ 161 (189)
+.|.+.+ ..+...|-+.|..-.++ .+. ...+..|..||..
T Consensus 50 ~~g~~~~-~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~ 105 (285)
T cd03511 50 VYGVLYA-ALFARWHECVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRY 105 (285)
T ss_pred HHHHHHH-HHHHHHHHhhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Confidence 3444443 44666788887762111 111 1236789999964
No 33
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=35.11 E-value=1.1e+02 Score=21.37 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccc-chhhHHHHHhhhcCccc
Q 029727 38 GLIVFLGIITWTLLEYFLHRYLFHIKTK-SYWGNTFHYLIHGCHHK 82 (189)
Q Consensus 38 ~~~~~~g~~~~d~~eY~~HR~l~H~~~~-~~~~~~~~~~~H~~HH~ 82 (189)
...+.+++++..+.+-+.|--+....++ .++ ..-..+.|..||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~-~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 70 ALAFLLGIALFYLWYIFIHSGYHHRFPPRLRY-LFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccCCCCCcchh-HhcCHHHHHhhCc
Confidence 3456677777778888888854122221 111 1224578999995
No 34
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=34.73 E-value=1.7e+02 Score=21.93 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=19.0
Q ss_pred ccchhhhHHHHHHHHHHHHhhhh----cCchhHHHHHHHHHHHHHHHH
Q 029727 7 TKWWVIPLVWLPVVCWSVSKSVK----MGLAPYLAGLIVFLGIITWTL 50 (189)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~d~ 50 (189)
+++.+-|++=+-..+++++.-.. .+..+....++|++|++.++.
T Consensus 34 VpFSiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (117)
T PF07226_consen 34 VPFSIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSA 81 (117)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 44444444444444444444321 112223444555555555443
No 35
>PLN02579 sphingolipid delta-4 desaturase
Probab=34.45 E-value=1.8e+02 Score=25.55 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.8
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.+++|..||..
T Consensus 126 ~~~~H~~HH~~ 136 (323)
T PLN02579 126 FQKYHLEHHRF 136 (323)
T ss_pred HHHHHHHHccC
Confidence 46789999964
No 36
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=33.48 E-value=1.8e+02 Score=22.83 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.5
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.++.|..||..
T Consensus 73 ~r~~H~~HH~~ 83 (175)
T cd03510 73 YRRSHLKHHRH 83 (175)
T ss_pred HHHHHHHHhCc
Confidence 36899999953
No 37
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=30.53 E-value=1.8e+02 Score=25.20 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccc----------------chhhHHHHH--hhhcCcccCC
Q 029727 35 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK----------------SYWGNTFHY--LIHGCHHKHP 84 (189)
Q Consensus 35 ~~~~~~~~~g~~~~d~~eY~~HR~l~H~~~~----------------~~~~~~~~~--~~H~~HH~~p 84 (189)
..+++..+.|...-....|.-|--+.-.+.. .+..+-+.| ..|..||..|
T Consensus 206 ~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p 273 (314)
T cd03512 206 LFLLIQAFYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHP 273 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCC
Confidence 4455566777777788889888754322211 123334444 5599999876
No 38
>PLN02598 omega-6 fatty acid desaturase
Probab=30.29 E-value=1.8e+02 Score=26.59 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=8.3
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.|..|..||..
T Consensus 176 wr~~H~~HH~~ 186 (421)
T PLN02598 176 WRIKHNTHHAH 186 (421)
T ss_pred HHHHHHHHccC
Confidence 36788999964
No 39
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.09 E-value=51 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.1
Q ss_pred CCCcCccchhhhHHHHHHHHHHHHhhhhcC
Q 029727 2 EFLTRTKWWVIPLVWLPVVCWSVSKSVKMG 31 (189)
Q Consensus 2 e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~ 31 (189)
|.-..-+-|+..++|+|+.+.++..-+|+.
T Consensus 79 e~~~~~p~W~hl~vw~P~~~~~sL~~lrpv 108 (126)
T COG5349 79 EVTLNPPLWVHLLVWLPLTLALSLLLLRPV 108 (126)
T ss_pred hhccCCCchhhhHHHHHHHHHHHHHhhhhh
Confidence 566677889999999999999988888763
No 40
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=29.53 E-value=3.3e+02 Score=22.54 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=8.8
Q ss_pred HhhhcCcccCC
Q 029727 74 YLIHGCHHKHP 84 (189)
Q Consensus 74 ~~~H~~HH~~p 84 (189)
.+.|..||+.+
T Consensus 86 ~~~H~~HH~~~ 96 (225)
T cd03513 86 LRKHHLHHRHP 96 (225)
T ss_pred HHHHHHHcCCC
Confidence 47899999865
No 41
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=28.83 E-value=1.7e+02 Score=26.82 Aligned_cols=27 Identities=30% Similarity=0.176 Sum_probs=18.3
Q ss_pred hhhHhhhccCCC------CCCCCcccchhhHhh
Q 029727 150 RLKRFHMNHHFR------IRDKGFGISSSLWDI 176 (189)
Q Consensus 150 ~~~~~H~~HH~~------~~~~NfGvt~~~wDr 176 (189)
|.+.+|..||.+ |+|.++--.+..||-
T Consensus 194 WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~ 226 (430)
T KOG4232|consen 194 WWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDP 226 (430)
T ss_pred HHHHHHhhhhccCccCCCCccccccchhhhCCC
Confidence 457899999963 567777555555543
No 42
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=27.62 E-value=3.4e+02 Score=23.32 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=8.8
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.+.+|..||..
T Consensus 97 ~r~~H~~HH~~ 107 (289)
T cd03508 97 FKKYHLEHHRY 107 (289)
T ss_pred HHHHHHHhccC
Confidence 46799999964
No 43
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=26.74 E-value=1.2e+02 Score=23.74 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=7.8
Q ss_pred hHhhhccCCC
Q 029727 152 KRFHMNHHFR 161 (189)
Q Consensus 152 ~~~H~~HH~~ 161 (189)
+..|..||..
T Consensus 58 r~~H~~HH~~ 67 (257)
T PF00487_consen 58 RISHNRHHHY 67 (257)
T ss_pred heeeeccccc
Confidence 6789999963
No 44
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=24.80 E-value=1.3e+02 Score=21.16 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=8.5
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.+..|..||..
T Consensus 52 ~~~~H~~HH~~ 62 (122)
T cd01060 52 WRRSHRRHHRY 62 (122)
T ss_pred HHHHHHHHhcC
Confidence 46889999964
No 45
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.01 E-value=2.9e+02 Score=20.13 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHhhh
Q 029727 10 WVIPLVWLPVVCWSVSKSV 28 (189)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~ 28 (189)
|..+++.+|+++++..++.
T Consensus 34 y~~lii~vPiatfF~lK~f 52 (102)
T KOG4783|consen 34 YCSLIIGVPIATFFALKFF 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567888999999998875
No 46
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=23.39 E-value=4.1e+02 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=8.7
Q ss_pred HhhhcCcccCCC
Q 029727 74 YLIHGCHHKHPM 85 (189)
Q Consensus 74 ~~~H~~HH~~p~ 85 (189)
.+.|..||+.+.
T Consensus 85 ~~~H~~HH~~~~ 96 (222)
T cd03507 85 RISHNRHHAHTG 96 (222)
T ss_pred HHHHHHHHhccC
Confidence 466888998643
No 47
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=22.74 E-value=3.4e+02 Score=22.42 Aligned_cols=11 Identities=45% Similarity=0.437 Sum_probs=8.6
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.++.|..||..
T Consensus 85 ~~~~H~~HH~~ 95 (225)
T cd03513 85 LLRKHHLHHRH 95 (225)
T ss_pred HHHHHHHHcCC
Confidence 46889999964
No 48
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=20.94 E-value=1.5e+02 Score=23.64 Aligned_cols=11 Identities=36% Similarity=0.274 Sum_probs=8.4
Q ss_pred hhHhhhccCCC
Q 029727 151 LKRFHMNHHFR 161 (189)
Q Consensus 151 ~~~~H~~HH~~ 161 (189)
.+..|..||..
T Consensus 51 w~~~H~~HH~~ 61 (204)
T cd03506 51 WKNKHNVHHAY 61 (204)
T ss_pred HHHHHhhhcCc
Confidence 46889999953
Done!