Query 029727
Match_columns 189
No_of_seqs 117 out of 831
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1o_A Putative; repressor, tr 22.6 18 0.0006 23.0 -0.1 12 162-173 11-22 (66)
2 2vgp_C Inner centromere protei 13.5 75 0.0026 18.7 1.2 11 174-184 24-34 (43)
3 2dw3_A Intrinsic membrane prot 13.5 2.4E+02 0.0083 18.6 3.9 14 146-159 64-77 (77)
4 2xq2_A Sodium/glucose cotransp 8.5 6.3E+02 0.022 22.3 6.2 8 152-159 586-593 (593)
5 4emh_A Probable U6 snRNA-assoc 7.5 89 0.003 21.7 0.0 12 153-164 4-15 (105)
6 4emk_A U6 snRNA-associated SM- 7.5 1.3E+02 0.0046 20.4 0.9 24 153-176 4-27 (94)
7 1pi7_A VPU protein, U ORF prot 7.1 3.8E+02 0.013 14.9 2.8 18 37-54 11-30 (36)
8 2v6z_M DNA polymerase epsilon 7.0 97 0.0033 21.5 0.0 12 153-164 4-15 (99)
9 2bbd_A Coat protein; archaea, 6.8 1E+02 0.0035 24.8 0.0 11 149-159 340-350 (350)
10 1q3l_A Heterochromatin protein 5.9 1.1E+02 0.0039 19.5 -0.1 19 151-169 1-19 (69)
No 1
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=22.59 E-value=18 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=7.8
Q ss_pred CCCCCcccchhh
Q 029727 162 IRDKGFGISSSL 173 (189)
Q Consensus 162 ~~~~NfGvt~~~ 173 (189)
..++||.|++-+
T Consensus 11 gsk~~~~Vs~Y~ 22 (66)
T 2k1o_A 11 GSKRNFSVTFYL 22 (66)
T ss_dssp --CCCEEEEEEE
T ss_pred ccccceEEEEEe
Confidence 347899998743
No 2
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=13.48 E-value=75 Score=18.68 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.0
Q ss_pred HhhhcCCCCCC
Q 029727 174 WDIVFGTLPPA 184 (189)
Q Consensus 174 wDrlFGT~~~~ 184 (189)
-|++||+-.+.
T Consensus 24 ~d~iFG~I~pp 34 (43)
T 2vgp_C 24 VDRMYGTIDSP 34 (43)
T ss_dssp HHHHTTTSCCC
T ss_pred HHHHcCCCCCc
Confidence 47888887654
No 3
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=13.47 E-value=2.4e+02 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=5.9
Q ss_pred hHhhhhhHhhhccC
Q 029727 146 GIILRLKRFHMNHH 159 (189)
Q Consensus 146 ~~~~~~~~~H~~HH 159 (189)
++...--++|..||
T Consensus 64 P~~~~~i~~~~~~~ 77 (77)
T 2dw3_A 64 PNITGALEHHHHHH 77 (77)
T ss_dssp CCSSCSCSSCCCCC
T ss_pred CcchhHHhhcccCC
Confidence 43333334554443
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.46 E-value=6.3e+02 Score=22.29 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=0.0
Q ss_pred hHhhhccC
Q 029727 152 KRFHMNHH 159 (189)
Q Consensus 152 ~~~H~~HH 159 (189)
+.||..||
T Consensus 586 ~~~~~~~~ 593 (593)
T 2xq2_A 586 PGHHHHHH 593 (593)
T ss_dssp --------
T ss_pred CCcccCCC
Confidence 45665555
No 5
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=7.54 E-value=89 Score=21.75 Aligned_cols=12 Identities=25% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhhhccCCCCCC
Q 029727 153 RFHMNHHFRIRD 164 (189)
Q Consensus 153 ~~H~~HH~~~~~ 164 (189)
++|..||.+|++
T Consensus 4 ~~~~~~~~~~~~ 15 (105)
T 4emh_A 4 SHHHHHHSQDPM 15 (105)
T ss_dssp ------------
T ss_pred ccccccccCCCC
Confidence 577778877654
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=7.45 E-value=1.3e+02 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=2.9
Q ss_pred HhhhccCCCCCCCCcccchhhHhh
Q 029727 153 RFHMNHHFRIRDKGFGISSSLWDI 176 (189)
Q Consensus 153 ~~H~~HH~~~~~~NfGvt~~~wDr 176 (189)
++|..||.+|+..--..=..+-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~Pl~lL~~ 27 (94)
T 4emk_A 4 SHHHHHHSQDPMSMTILPLELIDK 27 (94)
T ss_dssp ----------------CHHHHHHH
T ss_pred cccccccccCCccccccCHHHHHH
Confidence 467777777654443333333333
No 7
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=7.09 E-value=3.8e+02 Score=14.94 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH--HHHH
Q 029727 37 AGLIVFLGIITWTL--LEYF 54 (189)
Q Consensus 37 ~~~~~~~g~~~~d~--~eY~ 54 (189)
....+++++++|++ .||-
T Consensus 11 livalIiaIVVWtiv~ieYr 30 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIEGR 30 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567788888885 4663
No 8
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=7.03 E-value=97 Score=21.53 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=0.0
Q ss_pred HhhhccCCCCCC
Q 029727 153 RFHMNHHFRIRD 164 (189)
Q Consensus 153 ~~H~~HH~~~~~ 164 (189)
+||..||.+|++
T Consensus 4 ~~~~~~~~~~~~ 15 (99)
T 2v6z_M 4 SHHHHHHSQDPN 15 (99)
T ss_dssp ------------
T ss_pred ccccccccCCCC
Confidence 577778877654
No 9
>2bbd_A Coat protein; archaea, hyperthermophIle, evolution, crystal, viral; 2.04A {Sulfolobus turreted icosahedral virus}
Probab=6.81 E-value=1e+02 Score=24.79 Aligned_cols=11 Identities=55% Similarity=0.939 Sum_probs=0.0
Q ss_pred hhhhHhhhccC
Q 029727 149 LRLKRFHMNHH 159 (189)
Q Consensus 149 ~~~~~~H~~HH 159 (189)
|+++|||..||
T Consensus 340 ~~ikrhhhhhh 350 (350)
T 2bbd_A 340 RRIKRHHHHHH 350 (350)
T ss_dssp -----------
T ss_pred hhhhhccccCC
Confidence 66788887776
No 10
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=5.85 E-value=1.1e+02 Score=19.49 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=0.0
Q ss_pred hhHhhhccCCCCCCCCccc
Q 029727 151 LKRFHMNHHFRIRDKGFGI 169 (189)
Q Consensus 151 ~~~~H~~HH~~~~~~NfGv 169 (189)
|+.+|..||....+.-|-|
T Consensus 1 ~~~~~~~~~~~~~~~ey~V 19 (69)
T 1q3l_A 1 MKKHHHHHHAEEEEEEYAV 19 (69)
T ss_dssp ---------------CEEE
T ss_pred CCccccccccccCCCcEEE
Done!