Query 029727
Match_columns 189
No_of_seqs 117 out of 831
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 03:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029727.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029727hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o5oa_ c.61.1.1 (A:) Uracil P 7.8 51 0.0037 23.9 0.6 11 171-181 200-210 (210)
2 d1v9sa1 c.61.1.1 (A:1-208) Ura 7.7 52 0.0038 23.8 0.6 10 172-181 199-208 (208)
3 d1i5ea_ c.61.1.1 (A:) Uracil P 7.5 53 0.0039 23.7 0.6 9 173-181 200-208 (208)
4 d1bd3a_ c.61.1.1 (A:) Uracil P 6.5 61 0.0045 23.7 0.5 9 173-181 216-224 (224)
5 d2iiza1 d.58.4.14 (A:5-310) Me 5.3 1.2E+02 0.0085 23.1 1.6 21 164-184 56-76 (306)
6 d2lefa_ a.21.1.1 (A:) Lymphoid 4.8 34 0.0025 21.0 -1.8 34 139-172 2-35 (86)
7 d1puza_ a.218.1.1 (A:) Hypothe 4.4 1.6E+02 0.012 17.6 1.5 15 171-185 55-69 (82)
8 d1ppjg_ f.23.13.1 (G:) Ubiquin 3.5 4E+02 0.029 15.7 2.8 13 121-133 49-61 (75)
9 d1my6a1 a.2.11.1 (A:1-88) Fe s 3.4 1.2E+02 0.0088 18.5 0.1 12 149-160 22-33 (88)
10 d1idsa1 a.2.11.1 (A:2-85) Fe s 3.3 1.3E+02 0.0091 18.4 0.1 12 149-160 22-33 (84)
No 1
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=7.83 E-value=51 Score=23.87 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=8.8
Q ss_pred hhhHhhhcCCC
Q 029727 171 SSLWDIVFGTL 181 (189)
Q Consensus 171 ~~~wDrlFGT~ 181 (189)
-.+-||+|||.
T Consensus 200 GDaGDR~fgTk 210 (210)
T d1o5oa_ 200 GDAGDRLFRTK 210 (210)
T ss_dssp SCHHHHHHTCC
T ss_pred CCHHHhhcCCC
Confidence 35789999994
No 2
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=7.66 E-value=52 Score=23.76 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=8.0
Q ss_pred hhHhhhcCCC
Q 029727 172 SLWDIVFGTL 181 (189)
Q Consensus 172 ~~wDrlFGT~ 181 (189)
.+-||.|||.
T Consensus 199 DaGDR~fgT~ 208 (208)
T d1v9sa1 199 DAGDRIYGTK 208 (208)
T ss_dssp CHHHHHHTCC
T ss_pred ChHHhccCCC
Confidence 3679999994
No 3
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=7.47 E-value=53 Score=23.75 Aligned_cols=9 Identities=44% Similarity=0.479 Sum_probs=7.7
Q ss_pred hHhhhcCCC
Q 029727 173 LWDIVFGTL 181 (189)
Q Consensus 173 ~wDrlFGT~ 181 (189)
+-||.|||.
T Consensus 200 aGDR~fGT~ 208 (208)
T d1i5ea_ 200 AGDRLFGTK 208 (208)
T ss_dssp HHHHHHSCC
T ss_pred HHHhccCCC
Confidence 689999994
No 4
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=6.48 E-value=61 Score=23.72 Aligned_cols=9 Identities=44% Similarity=0.670 Sum_probs=7.8
Q ss_pred hHhhhcCCC
Q 029727 173 LWDIVFGTL 181 (189)
Q Consensus 173 ~wDrlFGT~ 181 (189)
.-||.|||.
T Consensus 216 aGDR~fGT~ 224 (224)
T d1bd3a_ 216 FGDRYFGTM 224 (224)
T ss_dssp HHHHHHTCC
T ss_pred HHHhhcCCC
Confidence 789999994
No 5
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA {Shewanella oneidensis [TaxId: 70863]}
Probab=5.28 E-value=1.2e+02 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=16.6
Q ss_pred CCCcccchhhHhhhcCCCCCC
Q 029727 164 DKGFGISSSLWDIVFGTLPPA 184 (189)
Q Consensus 164 ~~NfGvt~~~wDrlFGT~~~~ 184 (189)
...-|++..+||+++++..|+
T Consensus 56 t~tvgfg~~~~~~l~~~~~P~ 76 (306)
T d2iiza1 56 NGFVAIGANYWDSLYPESRPE 76 (306)
T ss_dssp EEEEEEETTTHHHHCTTCCCT
T ss_pred EEEEEECHHHHHHhCCCCCcc
Confidence 456788889999999887654
No 6
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.76 E-value=34 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=16.5
Q ss_pred hcCCCChhHhhhhhHhhhccCCCCCCCCcccchh
Q 029727 139 HHGKPSKGIILRLKRFHMNHHFRIRDKGFGISSS 172 (189)
Q Consensus 139 H~~~~~~~~~~~~~~~H~~HH~~~~~~NfGvt~~ 172 (189)
|..+|.+.|+.........--..+++.+.+.++.
T Consensus 2 hikRP~naf~lF~~~~r~~~~~~~P~~~~~~Isk 35 (86)
T d2lefa_ 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQ 35 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 5556666665554433333222344455554443
No 7
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=4.44 E-value=1.6e+02 Score=17.64 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=10.5
Q ss_pred hhhHhhhcCCCCCCC
Q 029727 171 SSLWDIVFGTLPPAK 185 (189)
Q Consensus 171 ~~~wDrlFGT~~~~~ 185 (189)
..+||+++|...+++
T Consensus 55 ~dL~~wl~g~~~~p~ 69 (82)
T d1puza_ 55 QELLALINGHSETDK 69 (82)
T ss_dssp HHHHHHHHTCSCCSC
T ss_pred HHHHHHHhCCCCCCc
Confidence 457888888776654
No 8
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.48 E-value=4e+02 Score=15.70 Aligned_cols=13 Identities=15% Similarity=0.191 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 029727 121 YGGILLGYVMYDV 133 (189)
Q Consensus 121 ~~g~~~gyl~Y~~ 133 (189)
.-.++++|++|+|
T Consensus 49 ~PPfi~~Y~iy~W 61 (75)
T d1ppjg_ 49 APPFVAFYLVYTW 61 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4446788999987
No 9
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.37 E-value=1.2e+02 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.096 Sum_probs=10.3
Q ss_pred hhhhHhhhccCC
Q 029727 149 LRLKRFHMNHHF 160 (189)
Q Consensus 149 ~~~~~~H~~HH~ 160 (189)
+.+.-||..||.
T Consensus 22 ~tm~~Hh~kHH~ 33 (88)
T d1my6a1 22 KTLEFHYGKHHK 33 (88)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 668899999994
No 10
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.26 E-value=1.3e+02 Score=18.35 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=9.9
Q ss_pred hhhhHhhhccCC
Q 029727 149 LRLKRFHMNHHF 160 (189)
Q Consensus 149 ~~~~~~H~~HH~ 160 (189)
+.+.-||..||.
T Consensus 22 ~Tm~~Hh~kHH~ 33 (84)
T d1idsa1 22 QINELHHSKHHA 33 (84)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 567889999994
Done!