BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029728
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 250 bits (639), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 144/187 (77%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K I+KA+R LR IA K CAP++LRLAWH AGT+D TKTGGP G+I+++ E
Sbjct: 5 PTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+HG+NNGL IA+ E +K + P ++YAD YQLAGVVAVE+TGGP V F PGR+D
Sbjct: 65 LAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGLSD+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 185 FDNSYFT 191
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 247 bits (630), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 246 bits (629), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 246 bits (629), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 185 FDNSYFT 191
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 245 bits (626), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+ML+LAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 185 FDNSYFT 191
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAWH AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH E SGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+ML LAWH AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 185 FDNSYFT 191
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 243 bits (620), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLAW AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA H AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 239 bits (611), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 142/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA + AGT+D TKTGGP G+I++ E
Sbjct: 5 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTIKHPAE 64
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 65 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 124
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 125 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 184
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 185 FDNSYFT 191
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 239 bits (609), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 141/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAMSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 141/187 (75%), Gaps = 1/187 (0%)
Query: 4 PVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEE 63
P V +Y K ++KA++ LR IA K CAP+MLRLA AGT+D TKTGGP G+I++ E
Sbjct: 17 PTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAACSAGTFDKGTKTGGPFGTIKHPAE 76
Query: 64 YSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS 123
+H +NNGL IA+ E +KA+ P ++YAD YQLAGVVAVEVTGGP V F PGR+D
Sbjct: 77 LAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP 136
Query: 124 PKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLK 182
P EGRLPDA +G+ HLRD+F + MGL+D+DIVALSGGHT+G AH ERSGF+GPWT PL
Sbjct: 137 PPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLI 196
Query: 183 FDNSYFV 189
FDNSYF
Sbjct: 197 FDNSYFT 203
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 129/201 (64%), Gaps = 25/201 (12%)
Query: 13 EIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNT----KTGGPNGSIRNEEEYSHGS 68
++ AR D++ L+ K C PIM+RL WHDAGTY+ N + GG NGS+R + E HG+
Sbjct: 7 QLKSAREDIKELLKTKFCHPIMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGA 66
Query: 69 NNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKD---SKISPK 125
N GL AL+ + +K K+ +TYADL+QLA A+E GGP + GR D + P+
Sbjct: 67 NAGLVNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPE 126
Query: 126 EGRLPDAKRGAP--HLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGF---------DG 174
EGRLPDA +P HLRD+FYRMGL+DK+IVALSG HTLGR+ P+RSG+ DG
Sbjct: 127 EGRLPDAGPPSPAQHLRDVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDG 186
Query: 175 P-------WTREPLKFDNSYF 188
P WT + LKFDNSYF
Sbjct: 187 PGAPGGQSWTAQWLKFDNSYF 207
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 8 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 67
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 68 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 187
Query: 188 FV 189
F
Sbjct: 188 FT 189
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 7 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 66
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 67 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 126
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 127 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSF 186
Query: 188 FV 189
F
Sbjct: 187 FT 188
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 13 EIDKARRDLRALIAYK-NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN 70
+I R D+ +I+ K P ++RLAWH+A +YD K G PN S+R + E + N
Sbjct: 8 DIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNK 67
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGR---KDSKISPKEG 127
GL I E +K K+P+I+YADL+ LA VA+E GGPT+ F GR KD + +G
Sbjct: 68 GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 128 RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSY 187
RLPD + H+R++F R+G +D++ VAL G HT G H E SG+ GPWT + FDNS+
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSF 187
Query: 188 FV 189
F
Sbjct: 188 FT 189
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G HTLG+ H + SG++GPWT P FDNS+++
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPNVFDNSFYL 204
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VALSG HTLG+ H + SG++GPWT FDNS+++
Sbjct: 159 QRLNMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYL 204
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G HTLG+ H + SG++GPWT FDNS+++
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYL 204
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G HTLG+ H + SG++GPWT FDNS+++
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYL 204
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G HTLG+ H + SG++GPW FDNS+++
Sbjct: 159 QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNSFYL 204
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 12 KEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNN 70
++ K + IA K C P+++RLAWH +GT+D + TGG G+ R ++E++ SN
Sbjct: 17 EDFQKVYNAIALKIAEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNA 76
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGR 128
GL+ F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GR
Sbjct: 77 GLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGR 136
Query: 129 LPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYF 188
LPDA + A ++R F R+ ++D+++VAL G H LG+ H +RSG++GP+ F N ++
Sbjct: 137 LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFY 196
Query: 189 V 189
+
Sbjct: 197 L 197
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYL 201
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYL 204
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYL 206
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 30 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 89
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 90 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 149
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++
Sbjct: 150 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYL 204
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
A ++R F R+ ++D+++VAL G H LG+ H +RSG++GPW F N +++
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYL 206
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCFTNEFYL 204
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N Y++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEYYL 201
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 38 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 97
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 98 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 203
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 32 LREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 91
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 92 KFLEPIHKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 151
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
A ++R F R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 152 DADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 207
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 207
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 207
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEFYL 206
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 21 LRALIAYKNC---APIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIAL 76
LR Y N P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+
Sbjct: 27 LREDDEYDNAIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGF 86
Query: 77 DFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKR 134
F E + + P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA +
Sbjct: 87 KFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADK 146
Query: 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
A ++R F R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 147 DAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 38 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 97
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 98 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 157
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H +RSG++GP+ F N +++
Sbjct: 158 QRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYL 203
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ N GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAW+ +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWYTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P++++LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVKLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPD + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N ++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEKYL 201
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPD + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPW 176
R+ ++D+++VAL G H LG+ H + SG++GPW
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPW 191
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++ LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVALAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++ LAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVLLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP+ F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEFYL 201
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G LG+ H + SG++GPW F N +++
Sbjct: 157 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYL 202
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAW +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G LG+ H + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYL 201
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLA+H +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 206
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP+ F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYL 206
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 34 MLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + + P I+
Sbjct: 46 LVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSG 105
Query: 93 DLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIFYRMGLSD 150
DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F R+ ++D
Sbjct: 106 DLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMND 165
Query: 151 KDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
+++VAL G H LG+ H + SG++GPW F N +++
Sbjct: 166 REVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYL 204
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R +++++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKQFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G LG+ H + SG++GPW F N +++
Sbjct: 157 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYL 202
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYL 206
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P ++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPELVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ + SG++GPW F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTELKNSGYEGPWGAANNVFTNEFYL 201
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYL 201
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 204
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 204
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 202
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 39 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 98
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 99 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 158
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 159 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 204
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 41 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 100
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 101 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 160
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 161 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 206
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFV 189
R+ ++D+++VAL G H LG+ H + SG++GP F N +++
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYL 201
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 36 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 96 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 155
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDG 174
R+ ++D+++VAL G H LG+ H + SG++G
Sbjct: 156 QRLNMNDREVVALMGAHALGKTHLKNSGYEG 186
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 37 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 96
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 97 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 156
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDG 174
R+ ++D+++VAL G H LG+ H + SG++G
Sbjct: 157 QRLNMNDREVVALMGAHALGKTHLKNSGYEG 187
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEEEYSHGSNNGLKIALDFCEEVKAK 85
Y P+++RLAWH +GT+D + TGG G+ R ++E++ SN GL+ F E + +
Sbjct: 42 YIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 101
Query: 86 HPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS--KISPKEGRLPDAKRGAPHLRDIF 143
P I+ DL+ L GV AV+ GP + + GR D+ +P GRLPDA + A ++R F
Sbjct: 102 FPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFF 161
Query: 144 YRMGLSDKDIVALSGGHTLGRAHPERSGFDG 174
R+ ++D+++VAL G H LG+ H + SG++G
Sbjct: 162 QRLNMNDREVVALMGAHALGKTHLKNSGYEG 192
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 32 PIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVK------AK 85
P +L+LA +DA TYD TK+GG NGSIR E S N GL L EEVK +K
Sbjct: 33 PSLLKLALNDAXTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISK 92
Query: 86 HPKITYADLYQLAGVVAVEVT---------GGPT------------------VDFVPGRK 118
I+YAD+ QLAG AV+ T GG D GR
Sbjct: 93 GGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRS 152
Query: 119 DSKISPKEGRLPD-AKRGAPHLRDIFYRMGLSDKDIVALSG 158
D+ + EGR+P K +D F +GL + + S
Sbjct: 153 DATEADPEGRVPQWGKATVQEXKDKFIAVGLGPRQLAVXSA 193
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 105/274 (38%), Gaps = 93/274 (33%)
Query: 9 EYLKEIDKA-RRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGS 57
E ++++D A ++DL+AL+ + + +M+RL WH AGTY + GG G+
Sbjct: 53 EEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGGAGTGN 112
Query: 58 IRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPG 116
R S N L A +K K+ K+++ADL AG +A E G T F G
Sbjct: 113 QRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFG 172
Query: 117 R-------KDSKISPKEGRL--------------------------------------PD 131
R KD P++ PD
Sbjct: 173 REDIWHPEKDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPD 232
Query: 132 AKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAH---------PE------------- 168
+ A +R F RM ++D++ VAL+ GGHT+G+ H PE
Sbjct: 233 PLKTAHDVRVTFARMAMNDEETVALTAGGHTVGKCHGNGNAALLGPEPEGADVEDQGLGW 292
Query: 169 -------------RSGFDGPWTREPLKFDNSYFV 189
SG +G WT P ++DN YF
Sbjct: 293 INKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFA 326
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKIT 90
++ AW A TY + K GG NG+ + ++++ + L L E + A T
Sbjct: 462 LVSTAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDRLPKVLAVLEGISAAT-GAT 520
Query: 91 YADLYQLAGVVAVEVTGGP-----TVDFVPGRKDS 120
AD+ LAG V VE + F PGR D+
Sbjct: 521 VADVIVLAGNVGVEQKARAAGVEIVLPFAPGRGDA 555
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 105/275 (38%), Gaps = 93/275 (33%)
Query: 7 DTEYLKEIDK-----ARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKT 51
D +Y +E K + DL L+ Y + P+ +R+AWH AGTY + +
Sbjct: 49 DFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRG 108
Query: 52 GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPT 110
G G R S N L A +K K+ KI++ADL LAG VA+E G T
Sbjct: 109 GAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKT 168
Query: 111 VDFVPGRKDS-------KISPKE-----------GRL----------------------P 130
+ GR+D+ P++ G + P
Sbjct: 169 FGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNP 228
Query: 131 DAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER---------------- 169
D + A ++R F RM ++DK+ AL +GGHT G+ H PE
Sbjct: 229 DPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGL 288
Query: 170 ----------------SGFDGPWTREPLKFDNSYF 188
SG +GPWT+ P ++D Y
Sbjct: 289 GWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYI 323
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFV 189
P N +FV
Sbjct: 640 PETLTNDFFV 649
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 105/275 (38%), Gaps = 93/275 (33%)
Query: 7 DTEYLKEIDK-----ARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKT 51
D +Y +E K + DL L+ Y + P+ +R+AWH AGTY + +
Sbjct: 49 DFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRG 108
Query: 52 GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPT 110
G G R S N L A +K K+ KI++ADL LAG VA+E G T
Sbjct: 109 GAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKT 168
Query: 111 VDFVPGRKDS-------KISPKE-----------GRL----------------------P 130
+ GR+D+ P++ G + P
Sbjct: 169 FGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNP 228
Query: 131 DAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER---------------- 169
D + A ++R F RM ++DK+ AL +GGHT G+ H PE
Sbjct: 229 DPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGL 288
Query: 170 ----------------SGFDGPWTREPLKFDNSYF 188
SG +GPWT+ P ++D Y
Sbjct: 289 GWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYI 323
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFV 189
P N +FV
Sbjct: 640 PETLTNDFFV 649
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGQDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA+ D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FV 189
F+
Sbjct: 202 FL 203
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA+ D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FV 189
F+
Sbjct: 202 FL 203
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 105/275 (38%), Gaps = 93/275 (33%)
Query: 7 DTEYLKEIDK-----ARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKT 51
D +Y +E K + DL L+ Y + P+ +R+AWH AGTY + +
Sbjct: 49 DFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRG 108
Query: 52 GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPT 110
G G R S N L A +K K+ KI++ADL LAG VA+E G T
Sbjct: 109 GAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKT 168
Query: 111 VDFVPGRKDS-------KISPKE-----------GRL----------------------P 130
+ GR+D+ P++ G + P
Sbjct: 169 FGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNP 228
Query: 131 DAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER---------------- 169
D + A ++R F RM ++DK+ AL +GGHT G+ H PE
Sbjct: 229 DPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGL 288
Query: 170 ----------------SGFDGPWTREPLKFDNSYF 188
+G +GPWT+ P ++D Y
Sbjct: 289 GWQNKNGNSKGGEMITTGIEGPWTQSPTEWDMGYI 323
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFV 189
P N +FV
Sbjct: 640 PETLTNDFFV 649
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 19 RDLRALIAYKNC---APIMLRLAWHDAGTYDVNT---KTGGPNGSIR--NEEEYSHGSNN 70
+DL+ I C A ++RL +HDA + GG +GS+ E + +NN
Sbjct: 22 QDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANN 81
Query: 71 GLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRL 129
G+ +++ KH I+ ADL Q AG VA+ G P ++F+ GR + I+ +G +
Sbjct: 82 GIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLI 141
Query: 130 PDAKRGAPHLRDIFYRM-GLSDKDIVALSGGHTLGRAHPERSGFD-GPWTREPLKFDNSY 187
P+ + + F G + ++V+L H++ RA D P+ P FD
Sbjct: 142 PEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQV 201
Query: 188 FV 189
F+
Sbjct: 202 FL 203
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 105/275 (38%), Gaps = 93/275 (33%)
Query: 7 DTEYLKEIDK-----ARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKT 51
D +Y +E K + DL L+ Y + P+ +R+AWH AGTY + +
Sbjct: 49 DFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRG 108
Query: 52 GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPT 110
G G R S N L A +K K+ KI++ADL LAG VA+E G T
Sbjct: 109 GAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKT 168
Query: 111 VDFVPGRKDS-------KISPKE-----------GRL----------------------P 130
+ GR+D+ P++ G + P
Sbjct: 169 FGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNP 228
Query: 131 DAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER---------------- 169
D + A ++R F RM ++DK+ AL +GGHT G+ H PE
Sbjct: 229 DPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGL 288
Query: 170 ----------------SGFDGPWTREPLKFDNSYF 188
+G +GPWT+ P ++D Y
Sbjct: 289 GWQNKNGNSKGGEMITAGIEGPWTQSPTEWDMGYI 323
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFV 189
P N +FV
Sbjct: 640 PETLTNDFFV 649
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 104/275 (37%), Gaps = 93/275 (33%)
Query: 7 DTEYLKEIDK-----ARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKT 51
D +Y +E K + DL L+ Y + P+ +R+AWH AGTY + +
Sbjct: 49 DFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRG 108
Query: 52 GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPT 110
G G R S N L A +K K+ KI++ADL LAG VA+E G T
Sbjct: 109 GAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKT 168
Query: 111 VDFVPGRKDS-------KISPKE-----------GRL----------------------P 130
+ GR+D+ P++ G + P
Sbjct: 169 FGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNP 228
Query: 131 DAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH----PER---------------- 169
D + A ++R F R ++DK+ AL +GGHT G+ H PE
Sbjct: 229 DPEASAKNIRQTFDRAAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGL 288
Query: 170 ----------------SGFDGPWTREPLKFDNSYF 188
SG +GPWT+ P ++D Y
Sbjct: 289 GWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYI 323
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS---IRNEEEYSHGSNNGLKIALDFCEEVKAKH---- 86
+++ AW A TY + K GG NG+ + ++ + L+ L E ++ +
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 87 ---PKITYADLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRGAP- 137
+++ ADL L G AVE + F PGR D+ P+ P P
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA--GPEHTDAPSFDALKPK 580
Query: 138 ------HLRDIFYR------------MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTRE 179
+++D R + L+ ++ AL GG A+ + + G +T E
Sbjct: 581 VDGVRNYIQDDITRPAEEVLVDNADLLNLTASELTALIGGMRSIGANYQDTDL-GVFTDE 639
Query: 180 PLKFDNSYFV 189
P N +FV
Sbjct: 640 PETLTNDFFV 649
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 42 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 101
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 102 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 161
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 162 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 220
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 221 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 251
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 416 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 473
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 474 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 533
Query: 108 -GPTVDFVPGRKDSK 121
TV F PGR D+
Sbjct: 534 HAVTVPFAPGRADAS 548
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+AWH AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNN--GLKIALDFCEEVKAKHPKI- 89
++RL +HD + N GSI +E+ +N+ G + + ++ P +
Sbjct: 38 LIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVV 97
Query: 90 TYADLYQLAGVVAVEVTGGP--TVDFVPGRKDSKISPKEG---RLPDAKRGAPHLRDIFY 144
+ D+ LA +V ++GGP TVD GR+D+ + + G +P +G ++ F
Sbjct: 98 SCTDVLALASQASVSLSGGPSWTVDL--GRRDTLTANQAGANSSIPSPTQGLSNITSKFS 155
Query: 145 RMGLSDKDIVALSGGHTLGRA 165
+GL+ D+VALSG HT GRA
Sbjct: 156 AVGLNTNDLVALSGAHTFGRA 176
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGK 175
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 58/211 (27%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGP-NGSIRNEE 62
++ +RDL AL+ + + + +R+A H AGTY GG G R
Sbjct: 76 DLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFAP 135
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK 121
S N L A +K K+ + I++ADL L G VA+E G T F GR D+
Sbjct: 136 LNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADTW 195
Query: 122 -------------------------------------------ISPK--EGRLPDAKRGA 136
++P+ +G PD A
Sbjct: 196 EPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGN-PDPVAAA 254
Query: 137 PHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH 166
+RD F RM ++D++ VAL +GGHT G+ H
Sbjct: 255 RDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS---I 58
+P VD + D A +L+A ++A ++ AW A T+ + K GG NG+ +
Sbjct: 450 IPAVDHPLIDAADAA--ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRL 507
Query: 59 RNEEEYSHGSNNGLKIALDFCEEVKAKH-------PKITYADLYQLAGVVAVEVTG---- 107
++++ L L+ E ++ +++ ADL LAG VE
Sbjct: 508 APQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAG 567
Query: 108 -GPTVDFVPGRKDS 120
TV F PGR D+
Sbjct: 568 HAVTVPFAPGRADA 581
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGK 174
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGK 174
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGK 175
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGK 175
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 153 RNVGLNRSSDLVALSGGHTFGK 174
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGK 175
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGK 175
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VALSGGH+ G+
Sbjct: 153 RNVGLNRSSDLVALSGGHSFGK 174
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ G + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPE---GFDSVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL +HD + N + E+ + G+ N G + V++ P
Sbjct: 33 AASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 93 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 152
Query: 144 YRMGLS-DKDIVALSGGHTLGR 164
+GL+ D+VAL GGHT G+
Sbjct: 153 RNVGLNRSSDLVALYGGHTFGK 174
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPQD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V+L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVSLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 31 APIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNN---GLKIALDFCEEVKAKHP 87
A +LRL + D + N + E+ + G+ N G + V++ P
Sbjct: 34 AASILRLHFEDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACP 93
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAPHLRDIF 143
+ ++ ADL +A +V + GGP+ GR+DS + LP P L+D F
Sbjct: 94 RTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSF 153
Query: 144 YRMGLS-DKDIVALSGGHTLGRAH 166
+GL+ D+VALSGGHT G+
Sbjct: 154 RNVGLNRSSDLVALSGGHTFGKNQ 177
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPQVFDSQFFI 199
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 82 VKAKHPK-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK---ISPKEGRLPDAKRGAP 137
V++ P+ ++ ADL +A +V + GGP+ GR+DS + LP P
Sbjct: 87 VESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLP 146
Query: 138 HLRDIFYRMGLS-DKDIVALSGGHTLGRAH 166
L+D F +GL+ D+VALSGGHT G+
Sbjct: 147 QLKDSFRNVGLNRSSDLVALSGGHTFGKNQ 176
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 34 MLRLAWHDAGTYDVNTKTG-GPNGSIRNEEEYSHGSNN--GLKIALDFCEEVKAKHPKI- 89
++RL +HD + GSI++E+ N+ G + + ++ P +
Sbjct: 37 LIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVV 96
Query: 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDS---KISPKEGRLPDAKRGAPHLRDIFYRM 146
+ +D+ LA +V + GGP+ + GR+DS ++ +P ++ F +
Sbjct: 97 SCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAV 156
Query: 147 GLSDKDIVALSGGHTLGRA 165
GL+ D+VALSG HT GRA
Sbjct: 157 GLNTNDLVALSGAHTFGRA 175
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVYLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAAAKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFI 199
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P+ + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDFCEEVKAKHP-KI 89
++RL +HD + N +I +E++ N+ GL + D V+ P +
Sbjct: 36 LMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTV 95
Query: 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK---EGRLPDAKRGAPHLRDIFYRM 146
+ AD+ +A +A + GGP GR+DS + + LP L+ F
Sbjct: 96 SCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQ 155
Query: 147 GLSDKDIVALSGGHTLGRA 165
GL+ D+V LSGGHT GRA
Sbjct: 156 GLNTLDLVTLSGGHTFGRA 174
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 35 LRLAWHDAGTYDVNTKTGGPNGSI--RNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
LRL +HDA + GG +GSI + E + +N G+ + + AKH I+
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 93 DLYQLAGVVAVE-VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRM---GL 148
D Q AG V V GG + F GR D+ + + +P + I RM G
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFD---SVDSILARMGDAGF 157
Query: 149 SDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ A G P+ P FD+ +F+
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFI 199
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 89 ITYADLYQLAGVV-AVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMG 147
+++ D Q AG V A GGP + F+ GR + +G +PD A + +G
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNISQPSPDGLVPDPTDSADKILARMADIG 163
Query: 148 LSDKDIVALSGGHTLGRAHPERSGFDG-PWTREPLKFDNSYFV 189
S ++V L H++ + + G P+ P FD +FV
Sbjct: 164 FSPTEVVHLLASHSIAAQYEVDTDVAGSPFDSTPSVFDTQFFV 206
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 93/262 (35%), Gaps = 86/262 (32%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 75 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 134
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 135 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 194
Query: 104 ---EVTGGPTVDFVPGRKDSKISPKEGRL------------------PDAKRGAPHLRDI 142
EV G ++ + S E L PD A +R+
Sbjct: 195 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 254
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 255 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 314
Query: 169 --RSGFDGPWTREPLKFDNSYF 188
SG + WT P K+DNS+
Sbjct: 315 AITSGIEVVWTNTPTKWDNSFL 336
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 475 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 534
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK 121
+ K+++ADL L G A+E TV F PGR D+
Sbjct: 535 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDAS 578
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 93/262 (35%), Gaps = 86/262 (32%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 72 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 131
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 132 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 191
Query: 104 ---EVTGGPTVDFVPGRKDSKISPKEGRL------------------PDAKRGAPHLRDI 142
EV G ++ + S E L PD A +R+
Sbjct: 192 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 251
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 252 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 311
Query: 169 --RSGFDGPWTREPLKFDNSYF 188
SG + WT P K+DNS+
Sbjct: 312 AITSGIEVVWTNTPTKWDNSFL 333
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 472 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 531
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK 121
+ K+++ADL L G A+E TV F PGR D+
Sbjct: 532 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDAS 575
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 34 MLRLAWHDAGTYDVNT-------------KTGGPNG-SIRNEEEYSHGSNNGLKIALDFC 79
+LRL +HD + KT GPN SIR G ++
Sbjct: 36 LLRLHFHDCFVQGCDASVLLDDTSNFTGEKTAGPNANSIR-----------GFEVIDTIK 84
Query: 80 EEVKAKHPKI-TYADLYQLAGVVAVEVTGGPTVDFVPGRKDS---KISPKEGRLPDAKRG 135
+V++ P + + AD+ +A +V GG + + + GR+DS +S LP
Sbjct: 85 SQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFN 144
Query: 136 APHLRDIFYRMGLSDKDIVALSGGHTLGRAH 166
L F G + K++V LSG HT+G+A
Sbjct: 145 LSGLISAFSNKGFTTKELVTLSGAHTIGQAQ 175
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 99/273 (36%), Gaps = 97/273 (35%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTY-DVNTKTGGPNGSIRNEE 62
+ + ++D+ AL+ + N + +R+A H AGTY ++ + GG G R
Sbjct: 83 DYEAVKKDIAALMTESQDWWPADFGNYGGLFVRMAXHSAGTYRAMDGRGGGGMGQQRFAP 142
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDS- 120
S N L A +K K+ KI++ADL L G VA+E G T+ F GR D+
Sbjct: 143 LNSWPDNQNLDKARRLIWPIKQKYGNKISWADLMLLTGNVALENMGFKTLGFGGGRADTW 202
Query: 121 ---------------------------KISPKEGRL----------------------PD 131
I+ + +L PD
Sbjct: 203 QSDEAVYWGAETTFVPQGNDVRYNNSVDINARADKLEKPLAATHMGLIYVNPEGPNGTPD 262
Query: 132 AKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAH-----------PE----------- 168
A +R+ F RMG++D + VAL +GGH G+ H PE
Sbjct: 263 PAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGMQGLGW 322
Query: 169 -------------RSGFDGPWTREPLKFDNSYF 188
SG + WT+ P K+ N Y
Sbjct: 323 HNSVGDGNGPNQMTSGLEVIWTKTPTKWSNGYL 355
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 42 AGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDFCEEVKAK------HPKITYA 92
A TY + K GG NG+ I E + + SNN L LD ++V++ + K++ A
Sbjct: 502 ATTYRNSDKRGGCNGARIALEPQRNWVSNNPTQLSAVLDALKKVQSDFNGSNGNKKVSLA 561
Query: 93 DLYQLAGVVAVE 104
DL L G AVE
Sbjct: 562 DLIVLGGTAAVE 573
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 93/262 (35%), Gaps = 86/262 (32%)
Query: 13 EIDKARRDLRALIA---------YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSI-RNEE 62
++D RD+ ++ Y + P+ +R+AWH AGTY ++ GG G + R
Sbjct: 72 DVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAP 131
Query: 63 EYSHGSNNGLKIALDFCEEVKAKH-PKITYADLYQLAGVVAV------------------ 103
S N L A VK K+ K+++ADL AG A+
Sbjct: 132 LNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGRVDQW 191
Query: 104 ---EVTGGPTVDFVPGRKDSKISPKEGRL------------------PDAKRGAPHLRDI 142
EV G ++ + S E L PD A +R+
Sbjct: 192 EPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRET 251
Query: 143 FYRMGLSDKDIVAL-SGGHTLGRAH---------PE------------------------ 168
F RM ++D + AL GGHT G+ H PE
Sbjct: 252 FRRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKD 311
Query: 169 --RSGFDGPWTREPLKFDNSYF 188
+G + WT P K+DNS+
Sbjct: 312 AITTGIEVVWTNTPTKWDNSFL 333
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN---GLKIALDFCEEVKAK---- 85
++ AW A ++ + K GG NG IR + + N+ L+ + EE++
Sbjct: 472 LVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQESFNSA 531
Query: 86 ---HPKITYADLYQLAGVVAVEVTGGP-----TVDFVPGRKDSK 121
+ K+++ADL L G A+E TV F PGR D+
Sbjct: 532 APGNIKVSFADLVVLGGCAAIEKAAKAAGHNITVPFTPGRTDAS 575
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D F G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFV 189
FD +++
Sbjct: 205 QVFDTQFYI 213
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++ +AW A T+ K GG NG+ + + N AL E+++ + K + A
Sbjct: 67 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 126
Query: 93 DLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRG-APHLRDIFYRM 146
D+ LAGVV VE V F PGR D++ + + + A R+ R+
Sbjct: 127 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARL 186
Query: 147 GLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNS 186
+S + + + L PE + G FD S
Sbjct: 187 DVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGS 226
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 34 MLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYA 92
++ +AW A T+ K GG NG+ + + N AL E+++ + K + A
Sbjct: 50 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 109
Query: 93 DLYQLAGVVAVEVTGGPT-----VDFVPGRKDSKISPKEGRLPDAKRG-APHLRDIFYRM 146
D+ LAGVV VE V F PGR D++ + + + A R+ R+
Sbjct: 110 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRARL 169
Query: 147 GLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNS 186
+S + + + L PE + G FD S
Sbjct: 170 DVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGS 209
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 31 APIMLRLAWHDAGTYDVNTKT---GGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP 87
AP ++R+ +HD + N + + ++ S G ++ V+A P
Sbjct: 33 APGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACP 92
Query: 88 K-ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKIS---PKEGRLPDAKRGAPHLRDIF 143
+ ++ AD+ A + + G T GR+D +S ++P A L + F
Sbjct: 93 QTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSF 152
Query: 144 YRMGLSDKDIVALSGGHTLGRAH 166
L+ ++V LSG H++G AH
Sbjct: 153 ANKTLTADEMVTLSGAHSIGVAH 175
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 89 ITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEG--RLPDAKRGAPHLRDIFYRM 146
++ AD+ LA +V ++GGP GRKD ++ + LP + F +
Sbjct: 92 VSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAV 151
Query: 147 GLSDKDIVALSGGHTLGRA 165
L+ D+VALSG HT G+A
Sbjct: 152 NLNITDVVALSGAHTFGQA 170
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 87 ELAFPANGGLTDTIEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 145
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 146 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 205
Query: 181 LKFDNSYFV 189
FD +++
Sbjct: 206 QVFDTQFYI 214
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFV 189
FD +++
Sbjct: 205 QVFDTQFYI 213
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR S
Sbjct: 86 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSS 144
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L H+L S F P P
Sbjct: 145 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTP 204
Query: 181 LKFDNSYFV 189
FD +++
Sbjct: 205 QVFDTQFYI 213
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 63 EYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPGRKDSK 121
E + +N GL ++ V H +++ DL Q A V + G P ++F+ GR +S
Sbjct: 85 ELAFPANGGLTDTVEALRAVGINH-GVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS 143
Query: 122 ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSG-FDGPWTREP 180
+P + D G S ++V L +L S F P P
Sbjct: 144 QPSPPSLIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAXSLASQEGLNSAIFRSPLDSTP 203
Query: 181 LKFDNSYFV 189
FD +++
Sbjct: 204 QVFDTQFYI 212
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSK--ISPKE--GRLPDAKRGA 136
E + + ++ +D+ LA +V V+GGP GR+DS+ S ++ LP
Sbjct: 96 ERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNV 155
Query: 137 PHLRDIFYRMGLSDKDIVALSGGHTLGRAH 166
L + R+GL D+V +SGGHT+G AH
Sbjct: 156 QSLLALLGRLGLDATDLVTISGGHTIGLAH 185
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 58 IRNEEEYSHGSNNGLKIALDFCEEVKAKHPKITYADLYQLAGVVAVE-VTGGPTVDFVPG 116
I + E + N GL + + KH +T D AG VA+ G P ++F G
Sbjct: 73 IFDTIETAFHPNIGLDEVVAMQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTG 131
Query: 117 RKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDK-DIVALSGGHTLGRAH---PERSGF 172
RK + +G +P+ + G D+ ++V + H++ + P G
Sbjct: 132 RKPATQPAPDGLVPEPFHTVDQIIARVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGL 191
Query: 173 DGPWTREPLKFDNSYFV 189
P+ P FD+ +FV
Sbjct: 192 --PFDSTPGIFDSQFFV 206
>pdb|3SZP|A Chain A, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
pdb|3SZP|B Chain B, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
Length = 291
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKH 86
YK+C+P++ RLA + T ++ + G +G IR S SN ++ + K+
Sbjct: 65 YKDCSPLLERLA---SMTEEITDECRGASGRIR----ISAPSNLTKRMMMPMFNAFMEKY 117
Query: 87 PKITYADLYQLAGVVAVEVTGGPTVDFV-PGRKDSKISPKEGRLPDAKRGAPH 138
P I + +L ++ T + V P R S I+ K G + D +P
Sbjct: 118 PDI-HIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQ 169
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 116 GRKDSKISPKEGRLPDAKRG-APHLRDIFYRMGLSDKDIVALSGGH--TLGRAHPERSGF 172
GR D I+P R PD G A + + ++G+ A G+ +LG + + F
Sbjct: 62 GRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADF 121
Query: 173 DGPWTREPLKFDN 185
W + LK+DN
Sbjct: 122 -ADWGVDYLKYDN 133
>pdb|1OGM|X Chain X, Dex49a From Penicillium Minioluteum
pdb|1OGO|X Chain X, Dex49a From Penicillium Minioluteum Complex With
Isomaltose
Length = 574
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 39 WHDAGTYDVNTKTGGPNGSIRNEEEYS-----HGSNN 70
WHD+G ++NT+T G++R +YS G+NN
Sbjct: 17 WHDSG--EINTQTPVQPGNVRQSHKYSVQVSLAGTNN 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,481,938
Number of Sequences: 62578
Number of extensions: 288463
Number of successful extensions: 937
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 197
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)