Query 029728
Match_columns 189
No_of_seqs 144 out of 1112
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 4.5E-66 9.7E-71 442.1 17.5 189 1-189 1-189 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 7.8E-64 1.7E-68 421.6 16.7 188 2-189 5-192 (251)
3 PLN02364 L-ascorbate peroxidas 100.0 1.3E-62 2.7E-67 414.6 16.9 188 2-189 4-192 (250)
4 cd00691 ascorbate_peroxidase A 100.0 1.6E-59 3.6E-64 396.7 16.1 186 4-189 2-191 (253)
5 PF00141 peroxidase: Peroxidas 100.0 6E-53 1.3E-57 352.6 4.1 166 17-189 1-199 (230)
6 cd00649 catalase_peroxidase_1 100.0 2.2E-51 4.7E-56 363.1 11.6 183 7-189 32-306 (409)
7 cd00692 ligninase Ligninase an 100.0 1.1E-50 2.4E-55 352.6 14.6 174 15-189 18-204 (328)
8 PLN03030 cationic peroxidase; 100.0 1.5E-51 3.3E-56 357.0 8.8 153 8-168 28-195 (324)
9 cd08201 plant_peroxidase_like_ 100.0 7.5E-51 1.6E-55 343.2 8.2 158 27-189 38-208 (264)
10 cd00693 secretory_peroxidase H 100.0 1.3E-50 2.8E-55 349.5 8.4 152 9-168 6-175 (298)
11 cd00314 plant_peroxidase_like 100.0 4.8E-49 1E-53 332.7 14.1 174 16-189 2-191 (255)
12 TIGR00198 cat_per_HPI catalase 100.0 2.7E-49 5.8E-54 369.0 11.6 183 7-189 42-315 (716)
13 PRK15061 catalase/hydroperoxid 100.0 2E-47 4.4E-52 355.0 11.4 183 7-189 44-319 (726)
14 cd08200 catalase_peroxidase_2 100.0 7.7E-44 1.7E-48 304.1 13.7 182 3-189 3-219 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 4E-38 8.6E-43 294.2 15.2 182 3-189 422-632 (716)
16 PRK15061 catalase/hydroperoxid 100.0 9.4E-38 2E-42 290.6 13.9 183 3-189 428-644 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.1E-36 6.6E-41 270.9 10.1 185 5-189 55-331 (730)
18 COG0376 KatG Catalase (peroxid 99.8 1.2E-18 2.7E-23 157.7 11.1 182 3-189 439-648 (730)
19 PF09533 DUF2380: Predicted li 69.1 2.8 6E-05 34.1 1.4 42 136-178 107-148 (188)
20 PF09027 GTPase_binding: GTPas 44.1 12 0.00027 25.5 1.1 13 176-189 30-42 (66)
21 COG2147 RPL19A Ribosomal prote 39.3 38 0.00082 26.7 3.2 23 6-28 24-48 (150)
22 PRK08570 rpl19e 50S ribosomal 38.5 40 0.00087 26.6 3.3 23 6-28 24-48 (150)
23 PF15656 Tox-HDC: Toxin with a 38.2 13 0.00028 28.3 0.5 36 145-188 22-65 (119)
24 cd00481 Ribosomal_L19e Ribosom 38.0 40 0.00087 26.5 3.2 23 6-28 21-45 (145)
25 cd01418 Ribosomal_L19e_A Ribos 36.1 45 0.00097 26.2 3.2 23 6-28 21-45 (145)
26 PRK12346 transaldolase A; Prov 36.0 32 0.0007 30.3 2.7 58 105-162 168-241 (316)
27 PTZ00411 transaldolase-like pr 35.8 37 0.0008 30.2 3.0 57 106-162 180-252 (333)
28 cd00957 Transaldolase_TalAB Tr 35.7 37 0.0008 29.9 3.0 57 106-162 168-240 (313)
29 PRK12309 transaldolase/EF-hand 32.1 51 0.0011 29.9 3.4 57 106-162 174-246 (391)
30 PF04225 OapA: Opacity-associa 31.9 29 0.00063 24.4 1.4 24 137-160 11-34 (85)
31 TIGR01911 HesB_rel_seleno HesB 31.3 12 0.00026 26.8 -0.7 32 15-56 8-39 (92)
32 PTZ00097 60S ribosomal protein 31.2 59 0.0013 26.4 3.2 23 6-28 22-46 (175)
33 cd01417 Ribosomal_L19e_E Ribos 30.9 60 0.0013 26.0 3.2 23 6-28 21-45 (164)
34 PRK13859 type IV secretion sys 28.8 35 0.00077 22.2 1.3 30 94-123 9-41 (55)
35 KOG0400 40S ribosomal protein 28.7 27 0.00059 27.1 0.9 32 135-166 32-64 (151)
36 PF00043 GST_C: Glutathione S- 28.7 1.5E+02 0.0033 19.8 4.7 36 72-107 33-73 (95)
37 cd00439 Transaldolase Transald 28.7 24 0.00051 30.0 0.6 87 74-162 127-231 (252)
38 COG1913 Predicted Zn-dependent 26.4 25 0.00055 28.5 0.4 15 158-172 132-146 (181)
39 PTZ00436 60S ribosomal protein 26.0 74 0.0016 28.2 3.1 23 6-28 24-48 (357)
40 TIGR02269 Myxococcus xanthus p 24.7 89 0.0019 25.8 3.2 43 135-178 132-174 (211)
41 COG4982 3-oxoacyl-[acyl-carrie 24.6 24 0.00052 34.4 -0.1 50 128-188 694-744 (866)
42 PRK05269 transaldolase B; Prov 23.5 62 0.0013 28.6 2.3 57 106-162 170-242 (318)
43 PRK02797 4-alpha-L-fucosyltran 22.9 82 0.0018 28.0 2.9 22 1-22 182-203 (322)
44 cd02642 R3H_encore_like R3H do 21.9 1.2E+02 0.0027 19.8 3.0 31 13-43 4-41 (63)
45 TIGR00874 talAB transaldolase. 20.3 96 0.0021 27.4 2.8 58 105-162 167-240 (317)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.5e-66 Score=442.09 Aligned_cols=189 Identities=90% Similarity=1.444 Sum_probs=185.3
Q ss_pred CCCCccChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCChhhhccCCCCchHHHHHHHH
Q 029728 1 MALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCE 80 (189)
Q Consensus 1 ~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~ 80 (189)
|+-|+|+++|+++++.+|++|+++++++.++|.+|||+||||+|||.++++|||||||++.+|+++++|.||++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid 80 (289)
T PLN02608 1 MAAPVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCE 80 (289)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHhhCCccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCCCCCCCCcCCChHHHHHHHHHCCCCccchhhhcccc
Q 029728 81 EVKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGH 160 (189)
Q Consensus 81 ~ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaH 160 (189)
+||+++|+|||||||+|||++||+.+|||.|+|++||+|+.+++++++||.|+.+++++++.|+++||+++|||||+|||
T Consensus 81 ~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 81 PVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 161 TLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 161 tiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
|||++||.+.||.|+|+.+|.+|||+||+
T Consensus 161 TiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~ 189 (289)
T PLN02608 161 TLGRAHPERSGFDGPWTKEPLKFDNSYFV 189 (289)
T ss_pred ccccccccCCCCCCCCCCCCCccChHHHH
Confidence 99999999999999999999999999995
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=7.8e-64 Score=421.63 Aligned_cols=188 Identities=62% Similarity=1.080 Sum_probs=184.7
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCChhhhccCCCCchHHHHHHHHH
Q 029728 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (189)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ 81 (189)
++|.+..+|.|+++.++++|.+++.++.++|.+|||+||||+|||..+++|||||||++.+|+++++|.||+.++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~ 84 (251)
T PLN02879 5 SYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDP 84 (251)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHhhCCccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCCCCCCCCcCCChHHHHHHHHHCCCCccchhhhccccc
Q 029728 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHT 161 (189)
Q Consensus 82 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHt 161 (189)
||++++.|||||||+||+++||+.+|||.|+|++||+|+..++++++||.|+.++++|++.|+++||+++|||||+||||
T Consensus 85 iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 85 IKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 162 LGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 162 iG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
||++||.++|+.|+|+.+|.+|||+||+
T Consensus 165 iG~ah~~r~g~~g~~d~tp~~FDN~Yy~ 192 (251)
T PLN02879 165 LGRCHKERSGFEGAWTPNPLIFDNSYFK 192 (251)
T ss_pred ccccccccccCCCCCCCCccceeHHHHH
Confidence 9999999999999999999999999995
No 3
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.3e-62 Score=414.63 Aligned_cols=188 Identities=60% Similarity=1.078 Sum_probs=183.6
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCChhhhccCCCCchHHHHHHHHH
Q 029728 2 ALPVVDTEYLKEIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEE 81 (189)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ 81 (189)
+||+++.+|.+.+++++++|++++.++.++|.+|||+||||+|||...+.|||||||++++|+++++|.||.+++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDP 83 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHhhCCccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCCCCCCCCcCCChHHHHHHHHH-CCCCccchhhhcccc
Q 029728 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYR-MGLSDKDIVALSGGH 160 (189)
Q Consensus 82 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~-~Gls~~e~VaL~GaH 160 (189)
||+++++|||||||+|||++||+++|||.|+|++||+|+.++.++++||.|+.++++|++.|++ +|||++|||||+|||
T Consensus 84 ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaH 163 (250)
T PLN02364 84 IREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAH 163 (250)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecce
Confidence 9999999999999999999999999999999999999999999988999999999999999996 699999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 161 TLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 161 tiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
|||++||.++||.|+|+.+|.+|||+||+
T Consensus 164 TiG~~hc~r~~~~g~~~~tp~~fDn~Yy~ 192 (250)
T PLN02364 164 TLGRCHKDRSGFEGAWTSNPLIFDNSYFK 192 (250)
T ss_pred eeccccCCCCCCCCCCCCCCCccchHHHH
Confidence 99999999999999999999999999995
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.6e-59 Score=396.68 Aligned_cols=186 Identities=62% Similarity=1.100 Sum_probs=177.0
Q ss_pred CccChHHHH-HHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCChhhhccCCCCchHHHHHHHHHH
Q 029728 4 PVVDTEYLK-EIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEV 82 (189)
Q Consensus 4 ~~~~~~y~~-~~~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 82 (189)
|+|+.-|.. .++.+++.|++.+.++.+++.+|||+||||++||++.+.|||||++++.+|+++++|.+|++++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 888877754 4788899999888899999999999999999999999999999999998999999999998899999999
Q ss_pred HhhCCccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCC---CCCCCCCcCCChHHHHHHHHHCCCCccchhhhccc
Q 029728 83 KAKHPKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP---KEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGG 159 (189)
Q Consensus 83 k~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~Ga 159 (189)
|+++|+|||||||+||+++||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.|+++||+++|||||+||
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 999999999999999999999999999999999999999887 67889999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 160 HTLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 160 HtiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
||||++||..++|.|+|+.+|.+|||+||+
T Consensus 162 HTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~ 191 (253)
T cd00691 162 HTLGRCHKERSGYDGPWTKNPLKFDNSYFK 191 (253)
T ss_pred ceeecccccCCCCCCCCCCCCCcccHHHHH
Confidence 999999999888999999999999999995
No 5
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=6e-53 Score=352.56 Aligned_cols=166 Identities=42% Similarity=0.649 Sum_probs=141.1
Q ss_pred HHHHHHHHH-hCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCC-hhhhccCCCCchHHHHHHHHHHHhh----CC-cc
Q 029728 17 ARRDLRALI-AYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRN-EEEYSHGSNNGLKIALDFCEEVKAK----HP-KI 89 (189)
Q Consensus 17 ~~~~l~~~~-~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~ik~~----~p-~V 89 (189)
+|++|++.+ .+++++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|++||++ || +|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 467787766 47999999999999999944 999999965 7899999999998899999999975 78 79
Q ss_pred CHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCCCC--CCCCcCCChHHHHHHHHHCCCCccchhhhcccccccccCC
Q 029728 90 TYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHP 167 (189)
Q Consensus 90 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHtiG~~~~ 167 (189)
||||||+||+++||+.+|||.|+|++||+|+..+++.+ +||.|..++++|++.|+++|||++|||||+||||||++||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999988643 5999999999999999999999999999999999999999
Q ss_pred CC---------CCCCC---------------CCCCCCCccccCCCC
Q 029728 168 ER---------SGFDG---------------PWTREPLKFDNSYFV 189 (189)
Q Consensus 168 ~~---------sg~~g---------------~~~~~p~~fdn~yf~ 189 (189)
.. ..++. +++ +|.+|||+||+
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~ 199 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYK 199 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHH
T ss_pred ccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHH
Confidence 61 11111 234 99999999995
No 6
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.2e-51 Score=363.07 Aligned_cols=183 Identities=39% Similarity=0.650 Sum_probs=168.9
Q ss_pred ChHHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CccCChhhhccCCCCc
Q 029728 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (189)
Q Consensus 7 ~~~y~~~~-----~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gsi~~~~E~~~~~N~g 71 (189)
+++|.+++ +++|++|++++++. .++|.+|||+||+++|||.++++||++ |+|||.+|.+++.|.|
T Consensus 32 ~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~g 111 (409)
T cd00649 32 DFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVN 111 (409)
T ss_pred CCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhh
Confidence 47888885 77799999999864 699999999999999999999999997 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCC--------------------------
Q 029728 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (189)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~-------------------------- 124 (189)
|++++.+|++||+++| .||+||||+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 112 L~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 112 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 9999999999999998 7999999999999999999999999999999996532
Q ss_pred ------------CCC--CCCCcCCChHHHHHHHHHCCCCccchhhh-cccccccccCCC---------------------
Q 029728 125 ------------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVAL-SGGHTLGRAHPE--------------------- 168 (189)
Q Consensus 125 ------------~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL-~GaHtiG~~~~~--------------------- 168 (189)
|++ .+|+|..++++|++.|.+||||++||||| +||||||++||.
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLg 271 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLG 271 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhc
Confidence 234 69999999999999999999999999999 599999999994
Q ss_pred --------------CCCCCCCCCCCCCccccCCCC
Q 029728 169 --------------RSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 169 --------------~sg~~g~~~~~p~~fdn~yf~ 189 (189)
.+|++|+|+.+|.+|||+||+
T Consensus 272 w~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~ 306 (409)
T cd00649 272 WKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLK 306 (409)
T ss_pred ccccCCCCCCCCCccccCCCCCCCCcchhhHHHHH
Confidence 258999999999999999995
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.1e-50 Score=352.64 Aligned_cols=174 Identities=29% Similarity=0.454 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHh-CCCc---hHHHHHHHhhhcCCCC-----CCCCCCCCCCccCCh--hhhccCCCCchHHHHHHHHHHH
Q 029728 15 DKARRDLRALIA-YKNC---APIMLRLAWHDAGTYD-----VNTKTGGPNGSIRNE--EEYSHGSNNGLKIALDFCEEVK 83 (189)
Q Consensus 15 ~~~~~~l~~~~~-~~~~---a~~~lRl~FHDc~t~d-----~s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~ik 83 (189)
-.+++||++.+. +..| ++.+|||+||||++|| ...+.|||||||++. .|+++++|.||+.+++.|++++
T Consensus 18 ~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~ 97 (328)
T cd00692 18 FDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFH 97 (328)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHH
Confidence 456888988774 5566 4569999999999999 467889999999864 5899999999998888888888
Q ss_pred hhCCccCHHHHHHHhhhhHHHh-cCCCccccCCCCCCCCCCCCCCCCCCcCCChHHHHHHHHHCCCCccchhhhcccccc
Q 029728 84 AKHPKITYADLYQLAGVVAVEV-TGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSGGHTL 162 (189)
Q Consensus 84 ~~~p~VS~ADiialAa~~av~~-~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHti 162 (189)
++++ |||||||+|||++||+. .|||.|+|++||+|+..+.++++||.|+.++++|+++|+++||+++|||||+|||||
T Consensus 98 e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTi 176 (328)
T cd00692 98 QKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSV 176 (328)
T ss_pred HhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 8765 99999999999999995 599999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCC-CCCCCCCccccCCCC
Q 029728 163 GRAHPERSGFDG-PWTREPLKFDNSYFV 189 (189)
Q Consensus 163 G~~~~~~sg~~g-~~~~~p~~fdn~yf~ 189 (189)
|++|....++.| +|+.+|.+|||+||+
T Consensus 177 G~a~~~Dps~~g~p~D~TP~~FDn~Yf~ 204 (328)
T cd00692 177 AAQDFVDPSIAGTPFDSTPGVFDTQFFI 204 (328)
T ss_pred cccCCCCCCCCCCCCCCCcchhcHHHHH
Confidence 999977766666 899999999999995
No 8
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.5e-51 Score=357.03 Aligned_cols=153 Identities=28% Similarity=0.378 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHHH-----HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCCh---hhhccCCCCchHHHHHHH
Q 029728 8 TEYLKEIDKARRDLRA-----LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE---EEYSHGSNNGLKIALDFC 79 (189)
Q Consensus 8 ~~y~~~~~~~~~~l~~-----~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~~~i 79 (189)
..|.++|+.+++.|++ +.+++.+++++|||+||||| ++||||||+++ .|+++++|.+| +++++|
T Consensus 28 ~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i 99 (324)
T PLN03030 28 GFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDVI 99 (324)
T ss_pred chhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHHH
Confidence 4577778888777754 34689999999999999999 89999999974 69999999998 689999
Q ss_pred HHHHhh----CC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCC--CCCCCCCcCCChHHHHHHHHHCCCCccc
Q 029728 80 EEVKAK----HP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP--KEGRLPDAKRGAPHLRDIFYRMGLSDKD 152 (189)
Q Consensus 80 ~~ik~~----~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~--~~~~lP~p~~~~~~l~~~F~~~Gls~~e 152 (189)
+.||++ || +|||||||++|||+||+++|||.|+|++||+|+.++. ...+||.|+.++++|++.|+++||+.+|
T Consensus 100 ~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D 179 (324)
T PLN03030 100 DDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQD 179 (324)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHHH
Confidence 999974 99 8999999999999999999999999999999998764 3458999999999999999999999999
Q ss_pred hhhhcccccccccCCC
Q 029728 153 IVALSGGHTLGRAHPE 168 (189)
Q Consensus 153 ~VaL~GaHtiG~~~~~ 168 (189)
||+||||||||++||.
T Consensus 180 lVaLsGAHTiG~ahC~ 195 (324)
T PLN03030 180 LVTLVGGHTIGTTACQ 195 (324)
T ss_pred heeeeeccccceeeee
Confidence 9999999999999996
No 9
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=7.5e-51 Score=343.15 Aligned_cols=158 Identities=32% Similarity=0.509 Sum_probs=141.8
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCChhhhccCCCCchH--HHHHHHHHHHhhCCccCHHHHHHHhhhhHHH
Q 029728 27 YKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNEEEYSHGSNNGLK--IALDFCEEVKAKHPKITYADLYQLAGVVAVE 104 (189)
Q Consensus 27 ~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~ik~~~p~VS~ADiialAa~~av~ 104 (189)
++..++.+|||+||||+|||...++|||||||++ |..++||.|+. ..++.++.|+. ++||||||||||+++||+
T Consensus 38 ~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~ 113 (264)
T cd08201 38 GRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVA 113 (264)
T ss_pred CccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998 56788999886 33455555533 489999999999999999
Q ss_pred hcCCCccccCCCCCCCCCCCCCCCCCCcCCChHHHHHHHHHCCCCccchhhhcc-cccccccCCCCC------CCC--C-
Q 029728 105 VTGGPTVDFVPGRKDSKISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPERS------GFD--G- 174 (189)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~G-aHtiG~~~~~~s------g~~--g- 174 (189)
.||||.|+|++||+|+..+.+.+ ||+|+.++++|++.|+++||+++|||+|+| |||||++||... |+. +
T Consensus 114 ~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~ 192 (264)
T cd08201 114 SCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTV 192 (264)
T ss_pred HcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCC
Confidence 99999999999999999988886 999999999999999999999999999996 999999999875 554 3
Q ss_pred -CCCCCCCccccCCCC
Q 029728 175 -PWTREPLKFDNSYFV 189 (189)
Q Consensus 175 -~~~~~p~~fdn~yf~ 189 (189)
||+++|.+|||+||+
T Consensus 193 ~p~dstp~~FDn~~f~ 208 (264)
T cd08201 193 LQFFDTTIQFDNKVVT 208 (264)
T ss_pred CCCCCCccccchHHHH
Confidence 899999999999984
No 10
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.3e-50 Score=349.48 Aligned_cols=152 Identities=34% Similarity=0.492 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHH-----HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCccCCh------hhhccCCCCchHHHHH
Q 029728 9 EYLKEIDKARRDLRA-----LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGSIRNE------EEYSHGSNNGLKIALD 77 (189)
Q Consensus 9 ~y~~~~~~~~~~l~~-----~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgsi~~~------~E~~~~~N~gl~~~~~ 77 (189)
.|.++|+.+++.|++ +..++.++|++|||+||||+ ++||||||+++ +|+++++|.|| ++++
T Consensus 6 ~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~ 77 (298)
T cd00693 6 FYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFD 77 (298)
T ss_pred cccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhH
Confidence 466667776666643 33689999999999999998 79999999864 59999999999 6999
Q ss_pred HHHHHHhh----CC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCC--CCCCCCcCCChHHHHHHHHHCCCCc
Q 029728 78 FCEEVKAK----HP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK--EGRLPDAKRGAPHLRDIFYRMGLSD 150 (189)
Q Consensus 78 ~i~~ik~~----~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~--~~~lP~p~~~~~~l~~~F~~~Gls~ 150 (189)
+|++||++ || +|||||||+||+++||+.+|||.|+|++||+|+..+.+ .++||.|+.+++++++.|+++||++
T Consensus 78 ~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 78 VIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCH
Confidence 99999974 88 99999999999999999999999999999999976653 3689999999999999999999999
Q ss_pred cchhhhcccccccccCCC
Q 029728 151 KDIVALSGGHTLGRAHPE 168 (189)
Q Consensus 151 ~e~VaL~GaHtiG~~~~~ 168 (189)
+|||||+||||||++||.
T Consensus 158 ~d~VaL~GaHTiG~~hc~ 175 (298)
T cd00693 158 TDLVALSGAHTIGRAHCS 175 (298)
T ss_pred HHheeecccceeeeeecc
Confidence 999999999999999995
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.8e-49 Score=332.70 Aligned_cols=174 Identities=47% Similarity=0.734 Sum_probs=159.7
Q ss_pred HHHHHHHHHH-hCCCchHHHHHHHhhhcCCCCCCC-CCCCCCCccCChhhhccCCCCchHHHHHHHHHHHhhCC---ccC
Q 029728 16 KARRDLRALI-AYKNCAPIMLRLAWHDAGTYDVNT-KTGGPNGSIRNEEEYSHGSNNGLKIALDFCEEVKAKHP---KIT 90 (189)
Q Consensus 16 ~~~~~l~~~~-~~~~~a~~~lRl~FHDc~t~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~ik~~~p---~VS 90 (189)
.++++|.+.+ +++.+++++|||+||||++|+.++ +.|||||||++.+|+++|+|.||.+++++|++||++++ +||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 3566666555 478899999999999999999988 77899999999999999999999899999999999985 799
Q ss_pred HHHHHHHhhhhHHHhc--CCCccccCCCCCCCC-----CCCCCCCCCCcCCChHHHHHHHHHCCCCccchhhhc-ccccc
Q 029728 91 YADLYQLAGVVAVEVT--GGPTVDFVPGRKDSK-----ISPKEGRLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTL 162 (189)
Q Consensus 91 ~ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHti 162 (189)
|||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.+..+++++++.|+++||+++|||||+ |+|||
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 9999999999999999 999999999999998 455778899999999999999999999999999999 99999
Q ss_pred -cccCCCCCCCC--CCCCCCCCccccCCCC
Q 029728 163 -GRAHPERSGFD--GPWTREPLKFDNSYFV 189 (189)
Q Consensus 163 -G~~~~~~sg~~--g~~~~~p~~fdn~yf~ 189 (189)
|++||...+.. .+|+.+|.+|||+||+
T Consensus 162 ~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~ 191 (255)
T cd00314 162 GGKNHGDLLNYEGSGLWTSTPFTFDNAYFK 191 (255)
T ss_pred cCcccCCCCCcccCCCCCCCCCccchHHHH
Confidence 99999887764 7899999999999995
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.7e-49 Score=369.03 Aligned_cols=183 Identities=37% Similarity=0.606 Sum_probs=168.0
Q ss_pred ChHHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CccCChhhhccCCCCc
Q 029728 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (189)
Q Consensus 7 ~~~y~~~~-----~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gsi~~~~E~~~~~N~g 71 (189)
+++|.++| +++|+||++++++. .++|.+|||+||+++|||.++++||++ |+|||.+|++|+.|.+
T Consensus 42 ~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~ 121 (716)
T TIGR00198 42 DFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVN 121 (716)
T ss_pred CccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhh
Confidence 58999986 55799999999874 699999999999999999999999996 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCC--------------------------
Q 029728 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISP-------------------------- 124 (189)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~-------------------------- 124 (189)
|++++++|++||++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 122 Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~ 201 (716)
T TIGR00198 122 LDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPL 201 (716)
T ss_pred HHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccc
Confidence 9999999999999999 8999999999999999999999999999999994321
Q ss_pred -----------CCC--CCCCcCCChHHHHHHHHHCCCCccchhhhc-ccccccccCCC----------------------
Q 029728 125 -----------KEG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPE---------------------- 168 (189)
Q Consensus 125 -----------~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHtiG~~~~~---------------------- 168 (189)
+++ .+|.|..++.+|++.|.+||||++|||||+ ||||||++||.
T Consensus 202 a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~ 281 (716)
T TIGR00198 202 AATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGW 281 (716)
T ss_pred hhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcc
Confidence 122 699999999999999999999999999996 99999999994
Q ss_pred -------------CCCCCCCCCCCCCccccCCCC
Q 029728 169 -------------RSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 169 -------------~sg~~g~~~~~p~~fdn~yf~ 189 (189)
.+|++|+|+.+|.+|||+||+
T Consensus 282 ~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~ 315 (716)
T TIGR00198 282 HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFY 315 (716)
T ss_pred cCCCCCCCCCCcccccCCCCCCCCCCccchHHHH
Confidence 367889999999999999995
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-47 Score=355.05 Aligned_cols=183 Identities=39% Similarity=0.663 Sum_probs=167.5
Q ss_pred ChHHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CccCChhhhccCCCCc
Q 029728 7 DTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPN-GSIRNEEEYSHGSNNG 71 (189)
Q Consensus 7 ~~~y~~~~-----~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~d-gsi~~~~E~~~~~N~g 71 (189)
+++|.++| +++|+||+++++++ .++|.+|||+||+++|||.++++||++ |+|||.+|.+|+.|.|
T Consensus 44 ~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~g 123 (726)
T PRK15061 44 DFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVN 123 (726)
T ss_pred CCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhh
Confidence 58899885 67799999999875 689999999999999999999999997 6999999999999999
Q ss_pred hHHHHHHHHHHHhhCC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCC-------------------------
Q 029728 72 LKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK------------------------- 125 (189)
Q Consensus 72 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~------------------------- 125 (189)
|++++++|++||++++ .||+||||+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 124 L~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 124 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 9999999999999998 89999999999999999999999999999999864321
Q ss_pred --------------CC--CCCCcCCChHHHHHHHHHCCCCccchhhhc-ccccccccCCC--------------------
Q 029728 126 --------------EG--RLPDAKRGAPHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPE-------------------- 168 (189)
Q Consensus 126 --------------~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHtiG~~~~~-------------------- 168 (189)
++ -+|+|..++.+|++.|.+||||++|||||+ ||||||++||.
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgL 283 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGL 283 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhc
Confidence 11 279999999999999999999999999995 99999999994
Q ss_pred ---------------CCCCCCCCCCCCCccccCCCC
Q 029728 169 ---------------RSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 169 ---------------~sg~~g~~~~~p~~fdn~yf~ 189 (189)
.+|++|+|+.+|.+|||+||+
T Consensus 284 gw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~ 319 (726)
T PRK15061 284 GWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFE 319 (726)
T ss_pred cccccCCCCCCCCCccccCCCCCCCCcchhhHHHHH
Confidence 357999999999999999995
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=7.7e-44 Score=304.06 Aligned_cols=182 Identities=30% Similarity=0.425 Sum_probs=155.8
Q ss_pred CCccChHHHH--HHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCc-cCChhhhccCCCCc--hHHHHH
Q 029728 3 LPVVDTEYLK--EIDKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNNG--LKIALD 77 (189)
Q Consensus 3 ~~~~~~~y~~--~~~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~ 77 (189)
+|+++.+++. +++.+|++|. ....+.+.+|||+||+++|||.++++||+||+ |+|.+|++|+.|.+ |.+++.
T Consensus 3 ~p~~~~~~i~~~di~~lk~~i~---~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~ 79 (297)
T cd08200 3 IPAVDYELIDDADIAALKAKIL---ASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLA 79 (297)
T ss_pred CCCCCccccCHHHHHHHHHHHH---hcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHH
Confidence 6888877755 3444444333 44578999999999999999999999999996 99999999999999 999999
Q ss_pred HHHHHHhhCC-------ccCHHHHHHHhhhhHHHhcCC-----CccccCCCCCCCCCCCC--C---CCCCCcC-------
Q 029728 78 FCEEVKAKHP-------KITYADLYQLAGVVAVEVTGG-----PTVDFVPGRKDSKISPK--E---GRLPDAK------- 133 (189)
Q Consensus 78 ~i~~ik~~~p-------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~~~~--~---~~lP~p~------- 133 (189)
+|++||+++| .||+||+|+||+.+|||.+|| |.++|.+||.|+..+.. + .++|.+.
T Consensus 80 ~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~ 159 (297)
T cd08200 80 VLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLK 159 (297)
T ss_pred HHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccc
Confidence 9999999997 799999999999999999999 99999999999987542 2 2455432
Q ss_pred -----CChHHHHHHHHHCCCCccchhhhcccc-cccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 134 -----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 134 -----~~~~~l~~~F~~~Gls~~e~VaL~GaH-tiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
...+.|++.|.++|||++|||||+||| ++|++|. .|+ +|+||.+|.+|||+||+
T Consensus 160 ~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s~-~G~wT~~p~~f~N~fF~ 219 (297)
T cd08200 160 KGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GSK-HGVFTDRPGVLTNDFFV 219 (297)
T ss_pred cCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CCC-CCCCcCCCCccccHHHH
Confidence 134679999999999999999999997 6999886 564 69999999999999995
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4e-38 Score=294.22 Aligned_cols=182 Identities=30% Similarity=0.421 Sum_probs=153.8
Q ss_pred CCccChHHHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCc-cCChhhhccCCC--CchHHHHHH
Q 029728 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSN--NGLKIALDF 78 (189)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~ 78 (189)
+|+|+.+++ ++-++.|++ ++.+..+.+.+|||+||+++|||.++++||+||+ |||.+|++|+.| .||.+++.+
T Consensus 422 ~p~~~~~~v---~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~ 498 (716)
T TIGR00198 422 LPPVDYTLS---EGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAV 498 (716)
T ss_pred CCCCCchhH---HHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHH
Confidence 688887664 333444543 4456778999999999999999999999999995 999999999999 899999999
Q ss_pred HHHHHhhCC--ccCHHHHHHHhhhhHHHhc---CCC--ccccCCCCCCCCCCC--CCCCCC---Cc------------CC
Q 029728 79 CEEVKAKHP--KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISP--KEGRLP---DA------------KR 134 (189)
Q Consensus 79 i~~ik~~~p--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~~~--~~~~lP---~p------------~~ 134 (189)
|++||+++| .||+||+|+||+.+|||.+ ||| .++|.+||.|+.... +++..| .+ ..
T Consensus 499 Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 499 LEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCC
Confidence 999999999 8999999999999999999 897 589999999998754 233222 11 12
Q ss_pred ChHHHHHHHHHCCCCccchhhhccc-ccccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 135 GAPHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 135 ~~~~l~~~F~~~Gls~~e~VaL~Ga-HtiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
....|++.|.++|||++|||||+|| |++|++|. .+ ++|+||.+|.+|||+||+
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~-~s-~~G~~T~~p~~f~NdfF~ 632 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHG-GS-KHGVFTDRVGVLSNDFFV 632 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCC-CC-CCCCCcCCCCccccHHHH
Confidence 3456889999999999999999999 59999997 44 469999999999999995
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.4e-38 Score=290.60 Aligned_cols=183 Identities=33% Similarity=0.457 Sum_probs=155.0
Q ss_pred CCccChHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHhhhcCCCCCCCCCCCCCCc-cCChhhhccCCCC--chHHHHHH
Q 029728 3 LPVVDTEYLKEIDKARRDLRALI-AYKNCAPIMLRLAWHDAGTYDVNTKTGGPNGS-IRNEEEYSHGSNN--GLKIALDF 78 (189)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~~~~-~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~ 78 (189)
+|+|+..++..-+ +..|++.| .+.-..+.+||++||+++|||.++++||+||+ |||.+|++|+.|. +|.+++.+
T Consensus 428 ~p~~~~~~~~~~d--i~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 428 VPAVDHELIDDAD--IAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CCCCCcccCCHHH--HHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 6888877755422 33455433 45567899999999999999999999999995 9999999999999 99999999
Q ss_pred HHHHHhhC-------CccCHHHHHHHhhhhHHHhc---CC--CccccCCCCCCCCCCCC--C---CCCCCcC--------
Q 029728 79 CEEVKAKH-------PKITYADLYQLAGVVAVEVT---GG--PTVDFVPGRKDSKISPK--E---GRLPDAK-------- 133 (189)
Q Consensus 79 i~~ik~~~-------p~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~~~~--~---~~lP~p~-------- 133 (189)
|++||+++ |.||+||+|+||+.+|||.+ || |.++|.+||.|+..... + .++|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~ 585 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKK 585 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 99999997 68999999999999999998 57 99999999999987542 2 2567543
Q ss_pred ----CChHHHHHHHHHCCCCccchhhhcccc-cccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 134 ----RGAPHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 134 ----~~~~~l~~~F~~~Gls~~e~VaL~GaH-tiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
.....|++.|.++|||++|||||+||| ++|.+|. .|+ +|+||.+|.+|||+||+
T Consensus 586 ~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~-~S~-~G~~T~~p~~fsNdfFv 644 (726)
T PRK15061 586 GYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GSK-HGVFTDRPGVLTNDFFV 644 (726)
T ss_pred cCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CCC-CCCCcCCCCccccHHHH
Confidence 123679999999999999999999996 7888885 464 79999999999999995
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=270.87 Aligned_cols=185 Identities=37% Similarity=0.613 Sum_probs=166.2
Q ss_pred ccChHHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCCC-ccCChhhhccCCC
Q 029728 5 VVDTEYLKEI-----DKARRDLRALIAYK---------NCAPIMLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSN 69 (189)
Q Consensus 5 ~~~~~y~~~~-----~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~t~d~s~~~gG~dg-si~~~~E~~~~~N 69 (189)
-++++|.+++ +++++||++++.+. .+++.+|||+||.++||+..++.||..+ ..||.++.+||.|
T Consensus 55 g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN 134 (730)
T COG0376 55 GEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDN 134 (730)
T ss_pred ccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcc
Confidence 4678999986 56699999999764 5789999999999999999999999875 9999999999999
Q ss_pred CchHHHHHHHHHHHhhCC-ccCHHHHHHHhhhhHHHhcCCCccccCCCCCCCCCCCC-----------------------
Q 029728 70 NGLKIALDFCEEVKAKHP-KITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPK----------------------- 125 (189)
Q Consensus 70 ~gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~~~~----------------------- 125 (189)
.+|++++++|++||++|+ .||+||+|.|++.+|++.+|++++.|..||.|...+..
T Consensus 135 ~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le 214 (730)
T COG0376 135 ANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLE 214 (730)
T ss_pred cchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccccccccccccccc
Confidence 999999999999999999 99999999999999999999999999999999866542
Q ss_pred ---------------C--CCCCCcCCChHHHHHHHHHCCCCccchhhhcc-cccccccCCCC------------------
Q 029728 126 ---------------E--GRLPDAKRGAPHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPER------------------ 169 (189)
Q Consensus 126 ---------------~--~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~G-aHtiG~~~~~~------------------ 169 (189)
+ +..|+|..+..+++..|++|+++++|.|||++ |||+|.+|...
T Consensus 215 ~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qG 294 (730)
T COG0376 215 NPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQG 294 (730)
T ss_pred CchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhc
Confidence 1 24788888899999999999999999999996 89999999742
Q ss_pred -----------------CCCCCCCCCCCCccccCCCC
Q 029728 170 -----------------SGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 170 -----------------sg~~g~~~~~p~~fdn~yf~ 189 (189)
||++|+|+.+|++|||+||.
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~ 331 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFE 331 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHH
Confidence 46699999999999999983
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.2e-18 Score=157.65 Aligned_cols=182 Identities=31% Similarity=0.427 Sum_probs=142.9
Q ss_pred CCccChHHHHHHHHHHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC-ccCChhhhccCCCC--chHHHHHH
Q 029728 3 LPVVDTEYLKEIDKARRDLRA-LIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG-SIRNEEEYSHGSNN--GLKIALDF 78 (189)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~l~~-~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~ 78 (189)
+|+|+.+..+ +..+.|++ ++.+.-....++-.+|-.+.||+.|++.||+|| .|++.+.++|+.|. -|.+++.+
T Consensus 439 iP~vd~~l~d---~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~ 515 (730)
T COG0376 439 LPAVDYELVD---ADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAV 515 (730)
T ss_pred CCccccccch---HHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHH
Confidence 6888876654 33445554 445667788999999999999999999999998 89999999999996 57789999
Q ss_pred HHHHHhhCC-ccCHHHHHHHhhhhHHHhc---CCC--ccccCCCCCCCCCCCCC-----CCCCC------------cCCC
Q 029728 79 CEEVKAKHP-KITYADLYQLAGVVAVEVT---GGP--TVDFVPGRKDSKISPKE-----GRLPD------------AKRG 135 (189)
Q Consensus 79 i~~ik~~~p-~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~~~~~-----~~lP~------------p~~~ 135 (189)
++.|.+++. .||.||+|+|++..+||.+ .|- .+||..||.|+++.-.. -+-|- ....
T Consensus 516 le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~p 595 (730)
T COG0376 516 LEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTP 595 (730)
T ss_pred HHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCH
Confidence 999999986 7999999999999999975 454 56889999999764321 01111 1112
Q ss_pred hHHHHHHHHHCCCCccchhhhccc-ccccccCCCCCCCCCCCCCCCCccccCCCC
Q 029728 136 APHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGFDGPWTREPLKFDNSYFV 189 (189)
Q Consensus 136 ~~~l~~~F~~~Gls~~e~VaL~Ga-HtiG~~~~~~sg~~g~~~~~p~~fdn~yf~ 189 (189)
-.-|+++-+-++||..||++|+|| .-+|..+.. + -+|.||..|..+.|+||.
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~-s-~~GVfT~~pg~LtndFFv 648 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGG-S-KHGVFTDRPGVLTNDFFV 648 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcceEeeccCCCC-C-ccceeccCcccccchhhh
Confidence 234788888899999999999998 566655532 2 268999999999999994
No 19
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=69.08 E-value=2.8 Score=34.11 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=31.1
Q ss_pred hHHHHHHHHHCCCCccchhhhcccccccccCCCCCCCCCCCCC
Q 029728 136 APHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTR 178 (189)
Q Consensus 136 ~~~l~~~F~~~Gls~~e~VaL~GaHtiG~~~~~~sg~~g~~~~ 178 (189)
..+|...|.++|+++.|.+.++..|.--+.|... |-.|.|+.
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~vH~rIH~G~-~~GG~WN~ 148 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRDVHRRIHGGG-GRGGAWNQ 148 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHHHHHHhhCCC-CCCCcchH
Confidence 3578999999999999999999876555666432 12377863
No 20
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=44.10 E-value=12 Score=25.46 Aligned_cols=13 Identities=38% Similarity=0.974 Sum_probs=4.6
Q ss_pred CCCCCCccccCCCC
Q 029728 176 WTREPLKFDNSYFV 189 (189)
Q Consensus 176 ~~~~p~~fdn~yf~ 189 (189)
|. +|..|||.|+.
T Consensus 30 Wg-~~~~idn~yl~ 42 (66)
T PF09027_consen 30 WG-SPSEIDNNYLN 42 (66)
T ss_dssp ---SS----TTT--
T ss_pred cC-Chhhhhhhhhc
Confidence 54 89999999973
No 21
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=39.29 E-value=38 Score=26.72 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.4
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||++++.++.| ++||+++|.+.
T Consensus 24 idp~~~eei~~A~TR~dIr~LIk~g 48 (150)
T COG2147 24 IDPNEIEEIASAITREDIRALIKDG 48 (150)
T ss_pred eChHHHHHHHHhhhHHHHHHHHHCC
Confidence 579999999888 99999999875
No 22
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=38.46 E-value=40 Score=26.65 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.6
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||+++++++.| +++|+++|.+.
T Consensus 24 ~DP~~~~eI~~A~tR~dIR~LI~~G 48 (150)
T PRK08570 24 IDPEALEDVAEAITREDIRELIKEG 48 (150)
T ss_pred eCHHHHHHHHHHhhHHHHHHHHHCC
Confidence 489999999888 99999999885
No 23
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=38.17 E-value=13 Score=28.25 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=24.8
Q ss_pred HCCCC--ccchhhhcccccccccCCCCCCCCCCCC------CCCCccccCCC
Q 029728 145 RMGLS--DKDIVALSGGHTLGRAHPERSGFDGPWT------REPLKFDNSYF 188 (189)
Q Consensus 145 ~~Gls--~~e~VaL~GaHtiG~~~~~~sg~~g~~~------~~p~~fdn~yf 188 (189)
+++++ ..+++.|||.| |..+. ..|. .+|...+++||
T Consensus 22 ar~~s~~~~~I~IlSGtH--G~~~G------~nw~~~~~~~R~p~l~e~~f~ 65 (119)
T PF15656_consen 22 ARRPSGDNGDIHILSGTH--GYCSG------QNWLSESNRLRRPGLKEKAFY 65 (119)
T ss_pred HhCcCCCCCCEEEEeCCC--CCccc------cchhhccccccCchhhhhhHH
Confidence 45665 89999999988 55442 2454 35777777776
No 24
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=38.02 E-value=40 Score=26.50 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.6
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||++++++..| +++|+++|.+.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LIkdG 45 (145)
T cd00481 21 IDPNELEEIANANTREDIRKLIKDG 45 (145)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 489999999888 99999999885
No 25
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=36.10 E-value=45 Score=26.24 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=20.5
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||++++++..| +++|+++|.+.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LI~~G 45 (145)
T cd01418 21 IDPERLEEVAEAITRDDIRALIKEG 45 (145)
T ss_pred eChHHHHHHHHhhhHHHHHHHHHCC
Confidence 489999999888 99999999875
No 26
>PRK12346 transaldolase A; Provisional
Probab=35.97 E-value=32 Score=30.34 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.8
Q ss_pred hcCCCccccCCCCCCCCCCC--C-CCCCCCcCC---ChHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 105 VTGGPTVDFVPGRKDSKISP--K-EGRLPDAKR---GAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~~~--~-~~~lP~p~~---~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
.+|-..+..++||-|...-. + ...-+.... .+.++.+.|++.|+. ..|+.+|.|+|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 35778889999998764211 1 111122222 356677788888864 5677889999854
No 27
>PTZ00411 transaldolase-like protein; Provisional
Probab=35.80 E-value=37 Score=30.21 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=36.0
Q ss_pred cCCCccccCCCCCCCCCCCC---CCCCCCcCCC---hHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 106 TGGPTVDFVPGRKDSKISPK---EGRLPDAKRG---APHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 106 ~GGP~~~v~~GR~D~~~~~~---~~~lP~p~~~---~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
+|-..+..++||.+...-.+ ....+....+ +.++.+.|++.|+. .+|+.+|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 47778899999985532211 1112222333 55677788888875 4677889999854
No 28
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=35.68 E-value=37 Score=29.92 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=34.5
Q ss_pred cCCCccccCCCCCCCCCCCCCC--CCCC----cCCChHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 106 TGGPTVDFVPGRKDSKISPKEG--RLPD----AKRGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 106 ~GGP~~~v~~GR~D~~~~~~~~--~lP~----p~~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
+|-..+..++||-|-..-...+ ..+. ....+.++.+.|++.|+. ..|+.+|.|+|.+
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d~~ 240 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDYL 240 (313)
T ss_pred cCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCeE
Confidence 4777889999998754211101 1111 112356677788888875 4566778888743
No 29
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=32.14 E-value=51 Score=29.91 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=35.9
Q ss_pred cCCCccccCCCCCCCCCCCCCC--CCCCcC----CChHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 106 TGGPTVDFVPGRKDSKISPKEG--RLPDAK----RGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 106 ~GGP~~~v~~GR~D~~~~~~~~--~lP~p~----~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
+|-..+..++||.|...-...+ .+|... ..+.++.+.|++.|+. ..|+..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 5778889999998763322111 133221 2356677788887764 4567778898844
No 30
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=31.94 E-value=29 Score=24.44 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCCccchhhhcccc
Q 029728 137 PHLRDIFYRMGLSDKDIVALSGGH 160 (189)
Q Consensus 137 ~~l~~~F~~~Gls~~e~VaL~GaH 160 (189)
+.|-..|++.||+.+||-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 467789999999999999988654
No 31
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=31.27 E-value=12 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC
Q 029728 15 DKARRDLRALIAYKNCAPIMLRLAWHDAGTYDVNTKTGGPNG 56 (189)
Q Consensus 15 ~~~~~~l~~~~~~~~~a~~~lRl~FHDc~t~d~s~~~gG~dg 56 (189)
++|.+.|+++++.....+..||+.+ ..|||.|
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v----------~~gGCsG 39 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHF----------AGMGCMG 39 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEE----------eCCCccC
Confidence 5677788887765433334588865 3588988
No 32
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=31.19 E-value=59 Score=26.37 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.6
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||+++++|..| +++|+++|.+.
T Consensus 22 iDP~~~~eI~~A~tR~dIR~LIkdG 46 (175)
T PTZ00097 22 LDPNEASEISLANSRFSIRKLIKDG 46 (175)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 489999999888 99999999885
No 33
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=30.86 E-value=60 Score=26.03 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||+++++|..| +++|+++|.+.
T Consensus 21 ~DP~~~~eI~~A~tR~dIR~LIkdG 45 (164)
T cd01417 21 LDPNEISEISNANSRQSIRKLIKDG 45 (164)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 489999999888 99999999885
No 34
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=28.77 E-value=35 Score=22.16 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHhhh---hHHHhcCCCccccCCCCCCCCCC
Q 029728 94 LYQLAGV---VAVEVTGGPTVDFVPGRKDSKIS 123 (189)
Q Consensus 94 iialAa~---~av~~~GGP~~~v~~GR~D~~~~ 123 (189)
+|+||+. +-+..|.||.++.-+||=-...+
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 4566665 33556899999999999654433
No 35
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=27 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHCCCCccch-hhhcccccccccC
Q 029728 135 GAPHLRDIFYRMGLSDKDI-VALSGGHTLGRAH 166 (189)
Q Consensus 135 ~~~~l~~~F~~~Gls~~e~-VaL~GaHtiG~~~ 166 (189)
++.+.+-.|+++|+++.++ |.|--+|-||.+.
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 3445566899999999998 5555689998775
No 36
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=28.68 E-value=1.5e+02 Score=19.76 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhh----CC-ccCHHHHHHHhhhhHHHhcC
Q 029728 72 LKIALDFCEEVKAK----HP-KITYADLYQLAGVVAVEVTG 107 (189)
Q Consensus 72 l~~~~~~i~~ik~~----~p-~VS~ADiialAa~~av~~~G 107 (189)
+.+.++.+++.-+. +. .+|.||+..+....-+...+
T Consensus 33 ~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 33 VPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 33455555554443 23 79999998888776655544
No 37
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=28.66 E-value=24 Score=29.98 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhCCccCHHHHHHHhhhhHH--HhcCCCccccCCCCCCCCCCCC---CCCCCCcCCCh---HHHHHHHHH
Q 029728 74 IALDFCEEVKAKHPKITYADLYQLAGVVAV--EVTGGPTVDFVPGRKDSKISPK---EGRLPDAKRGA---PHLRDIFYR 145 (189)
Q Consensus 74 ~~~~~i~~ik~~~p~VS~ADiialAa~~av--~~~GGP~~~v~~GR~D~~~~~~---~~~lP~p~~~~---~~l~~~F~~ 145 (189)
.++..++.++++ .|++-=.+.+....++ ..+|...+..++||.|...-.. .+.=|....++ .++.+.|++
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~ 204 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQ 204 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHH
Confidence 345556666554 2222222233333333 2347778899999998755321 11111111333 356667777
Q ss_pred CCCCc----------cchhhhcccccc
Q 029728 146 MGLSD----------KDIVALSGGHTL 162 (189)
Q Consensus 146 ~Gls~----------~e~VaL~GaHti 162 (189)
.|... .++..|.|+|++
T Consensus 205 ~~~~tkiL~AS~r~~~~v~~l~G~d~v 231 (252)
T cd00439 205 KFKKQRVLWASFSDTLYVAPLIGCDTV 231 (252)
T ss_pred hCCCCeEEEEeeCCHHHHHHhhCCCee
Confidence 77653 344555566644
No 38
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=26.36 E-value=25 Score=28.55 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=12.2
Q ss_pred ccccccccCCCCCCC
Q 029728 158 GGHTLGRAHPERSGF 172 (189)
Q Consensus 158 GaHtiG~~~~~~sg~ 172 (189)
-||++|..||.+...
T Consensus 132 lGH~~GL~HC~N~~C 146 (181)
T COG1913 132 LGHLLGLSHCPNPRC 146 (181)
T ss_pred hhhhcCcccCCCCCc
Confidence 379999999987653
No 39
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=25.95 E-value=74 Score=28.17 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.4
Q ss_pred cChHHHHHHHHH--HHHHHHHHhCC
Q 029728 6 VDTEYLKEIDKA--RRDLRALIAYK 28 (189)
Q Consensus 6 ~~~~y~~~~~~~--~~~l~~~~~~~ 28 (189)
+||+++++|..+ |++||++|.+.
T Consensus 24 iDPnel~eIa~AiTReDIRkLIkdG 48 (357)
T PTZ00436 24 LDPNEASEISNANSRKSVRKLIKDG 48 (357)
T ss_pred eCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 489999999888 99999999885
No 40
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=24.65 E-value=89 Score=25.85 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHCCCCccchhhhcccccccccCCCCCCCCCCCCC
Q 029728 135 GAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTR 178 (189)
Q Consensus 135 ~~~~l~~~F~~~Gls~~e~VaL~GaHtiG~~~~~~sg~~g~~~~ 178 (189)
-..+|-..|+++|+++-|.+.++--|+--+.|... |-.|.|+.
T Consensus 132 Qa~~LA~wF~~~Gv~iHd~Tl~Ip~~vHrriH~G~-g~GGaWN~ 174 (211)
T TIGR02269 132 QAPELAKWFARRGVKIHDFTLVIPRHTHRRIHSGA-GRGGAWNQ 174 (211)
T ss_pred CCHHHHHHHHHcCCChhheeeeccHHHHHHhhCCC-CCCChHHH
Confidence 45789999999999999999999888877887432 22367763
No 41
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=24.60 E-value=24 Score=34.41 Aligned_cols=50 Identities=20% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCCCcCCChHH-HHHHHHHCCCCccchhhhcccccccccCCCCCCCCCCCCCCCCccccCCC
Q 029728 128 RLPDAKRGAPH-LRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYF 188 (189)
Q Consensus 128 ~lP~p~~~~~~-l~~~F~~~Gls~~e~VaL~GaHtiG~~~~~~sg~~g~~~~~p~~fdn~yf 188 (189)
++|+|.....+ ..+-..+.-++.+|||++.|.-.+ |||-+..++|+.++|
T Consensus 694 alpsp~~~~~q~~~~p~~~l~~d~e~~vVivG~aEv-----------gpwGSsRTRfemE~~ 744 (866)
T COG4982 694 ALPSPPRPFTQTPPQPRANLKVDFEDVVVIVGFAEV-----------GPWGSSRTRFEMEVE 744 (866)
T ss_pred cCCCCCCCccCCCCCchhhcccCHHHceEEecceec-----------cCccCccchhhhhhc
Confidence 57777655533 233445667788999999875433 677788888887776
No 42
>PRK05269 transaldolase B; Provisional
Probab=23.45 E-value=62 Score=28.56 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=35.5
Q ss_pred cCCCccccCCCCCCCCCCCC---CCCCCC---cCCChHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 106 TGGPTVDFVPGRKDSKISPK---EGRLPD---AKRGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 106 ~GGP~~~v~~GR~D~~~~~~---~~~lP~---p~~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
+|-..+..++||-|...-.. ...-+. .-..+.++.+.|++.|+. ..++.+|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 47778899999987542111 011111 223466777788888875 4556678888865
No 43
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=22.85 E-value=82 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.6
Q ss_pred CCCCccChHHHHHHHHHHHHHH
Q 029728 1 MALPVVDTEYLKEIDKARRDLR 22 (189)
Q Consensus 1 ~~~~~~~~~y~~~~~~~~~~l~ 22 (189)
|.||+-+.+|+++++++-+++.
T Consensus 182 lsYp~gn~~Yi~~V~~~~~~lF 203 (322)
T PRK02797 182 MGYPANNQAYIEEVRQAGLALF 203 (322)
T ss_pred CCcCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999988766553
No 44
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.91 E-value=1.2e+02 Score=19.83 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCC-------chHHHHHHHhhhcC
Q 029728 13 EIDKARRDLRALIAYKN-------CAPIMLRLAWHDAG 43 (189)
Q Consensus 13 ~~~~~~~~l~~~~~~~~-------~a~~~lRl~FHDc~ 43 (189)
.|-+++++|.+++.++. -..+.-|+.-|++.
T Consensus 4 ~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la 41 (63)
T cd02642 4 FVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVA 41 (63)
T ss_pred HHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHH
Confidence 45667788999998762 13468999999997
No 45
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=20.30 E-value=96 Score=27.41 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=35.9
Q ss_pred hcCCCccccCCCCCCCCCCCCC---CCCCCcC---CChHHHHHHHHHCCCC----------ccchhhhcccccc
Q 029728 105 VTGGPTVDFVPGRKDSKISPKE---GRLPDAK---RGAPHLRDIFYRMGLS----------DKDIVALSGGHTL 162 (189)
Q Consensus 105 ~~GGP~~~v~~GR~D~~~~~~~---~~lP~p~---~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 162 (189)
.+|-..+..++||-+-..-... ...+... ..+.++.+.|++.|+. .+|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 3577888999999865321111 1112222 3456677788888875 4667778898844
Done!