Query 029729
Match_columns 189
No_of_seqs 117 out of 888
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 5.8E-59 1.2E-63 342.0 15.4 184 4-189 1-190 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 5.9E-35 1.3E-39 219.3 17.1 179 5-185 1-192 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 3.6E-32 7.7E-37 196.7 16.6 176 4-184 1-194 (198)
4 COG5143 SNC1 Synaptobrevin/VAM 99.9 9.9E-24 2.2E-28 156.6 14.5 176 5-185 2-187 (190)
5 PF13774 Longin: Regulated-SNA 99.9 7.9E-21 1.7E-25 126.2 10.6 81 31-112 1-82 (83)
6 KOG0860 Synaptobrevin/VAMP-lik 99.8 7.8E-20 1.7E-24 125.0 5.8 62 128-189 28-94 (116)
7 PF00957 Synaptobrevin: Synapt 99.7 2.2E-17 4.9E-22 110.9 4.6 61 128-188 2-67 (89)
8 PF04086 SRP-alpha_N: Signal r 95.9 0.014 3.1E-07 47.0 4.7 65 29-95 5-71 (279)
9 PF09426 Nyv1_N: Vacuolar R-SN 95.7 0.016 3.5E-07 41.0 3.9 57 31-87 46-110 (141)
10 KOG0781 Signal recognition par 94.6 0.1 2.2E-06 45.0 6.2 87 7-95 4-96 (587)
11 COG5143 SNC1 Synaptobrevin/VAM 94.3 0.029 6.4E-07 42.4 2.0 56 130-185 95-152 (190)
12 PF04099 Sybindin: Sybindin-li 92.8 2 4.2E-05 31.1 9.4 75 43-119 65-141 (142)
13 PF01217 Clat_adaptor_s: Clath 85.7 11 0.00023 26.9 12.7 88 5-94 1-96 (141)
14 PF04799 Fzo_mitofusin: fzo-li 82.9 6.8 0.00015 29.3 6.6 46 130-175 110-157 (171)
15 PF07439 DUF1515: Protein of u 75.5 21 0.00045 24.6 6.5 48 129-176 8-61 (112)
16 PF00957 Synaptobrevin: Synapt 74.9 20 0.00044 23.3 7.0 51 129-179 10-62 (89)
17 PF07352 Phage_Mu_Gam: Bacteri 73.2 21 0.00046 25.9 6.8 49 128-176 9-60 (149)
18 KOG0938 Adaptor complexes medi 73.0 55 0.0012 27.4 9.6 85 8-94 6-93 (446)
19 smart00096 UTG Uteroglobin. 72.5 13 0.00029 23.4 4.8 41 114-154 21-61 (69)
20 cd00633 Secretoglobin Secretog 72.4 13 0.00028 23.0 4.8 43 112-154 17-59 (67)
21 PF01099 Uteroglobin: Uteroglo 71.7 9.1 0.0002 23.8 3.9 43 112-154 17-59 (67)
22 PF05531 NPV_P10: Nucleopolyhe 69.1 19 0.00041 23.1 4.9 17 129-145 18-34 (75)
23 KOG3369 Transport protein part 67.1 52 0.0011 24.8 9.2 46 44-91 122-168 (199)
24 PF03670 UPF0184: Uncharacteri 64.0 11 0.00024 24.6 3.2 31 155-185 40-70 (83)
25 KOG3230 Vacuolar assembly/sort 62.0 27 0.00058 26.8 5.3 28 136-163 133-165 (224)
26 PF10112 Halogen_Hydrol: 5-bro 60.4 27 0.0006 26.5 5.5 53 111-163 135-194 (199)
27 PF03310 Cauli_DNA-bind: Cauli 60.3 40 0.00086 23.7 5.6 39 133-171 3-43 (121)
28 PF03164 Mon1: Trafficking pro 56.7 61 0.0013 27.8 7.4 67 28-94 37-104 (415)
29 cd07634 BAR_GAP10-like The Bin 55.7 78 0.0017 24.5 7.1 78 78-160 14-101 (207)
30 PF03908 Sec20: Sec20; InterP 54.9 59 0.0013 21.4 6.1 39 135-174 7-45 (92)
31 PF02520 DUF148: Domain of unk 54.5 66 0.0014 21.9 7.3 60 84-154 2-61 (113)
32 PF11675 DUF3271: Protein of u 54.3 45 0.00097 26.3 5.6 52 3-55 28-79 (249)
33 PHA03386 P10 fibrous body prot 52.9 43 0.00093 22.4 4.5 36 129-169 19-57 (94)
34 PF12352 V-SNARE_C: Snare regi 52.8 50 0.0011 20.0 6.9 56 128-183 7-64 (66)
35 COG3074 Uncharacterized protei 48.7 67 0.0015 20.3 6.9 59 127-185 16-76 (79)
36 PF09388 SpoOE-like: Spo0E lik 47.1 52 0.0011 18.5 5.0 30 134-163 2-40 (45)
37 KOG1983 Tomosyn and related SN 46.9 11 0.00023 36.2 1.4 36 150-185 948-985 (993)
38 PTZ00046 rifin; Provisional 46.6 50 0.0011 27.8 5.1 55 111-167 54-114 (358)
39 PF06008 Laminin_I: Laminin Do 46.1 1.5E+02 0.0032 23.5 10.3 13 156-168 221-233 (264)
40 PF10372 YojJ: Bacterial membr 45.6 77 0.0017 20.0 5.5 46 130-176 18-63 (70)
41 PHA01811 hypothetical protein 45.4 28 0.00061 21.5 2.6 19 43-61 4-22 (78)
42 COG5122 TRS23 Transport protei 45.3 1E+02 0.0023 21.5 9.3 48 42-91 56-104 (134)
43 cd07639 BAR_ACAP1 The Bin/Amph 45.2 1.4E+02 0.003 23.0 8.1 75 108-182 40-118 (200)
44 PHA03011 hypothetical protein; 43.9 1E+02 0.0022 20.9 6.4 54 111-167 63-118 (120)
45 PF02009 Rifin_STEVOR: Rifin/s 43.3 35 0.00077 28.0 3.8 53 111-165 34-93 (299)
46 PHA02557 22 prohead core prote 43.3 1.4E+02 0.003 24.1 6.8 94 78-172 89-192 (271)
47 KOG2740 Clathrin-associated pr 43.1 72 0.0016 27.0 5.4 37 58-94 60-96 (418)
48 PRK11546 zraP zinc resistance 42.6 1.3E+02 0.0028 21.8 6.6 22 124-146 85-106 (143)
49 PF04628 Sedlin_N: Sedlin, N-t 42.4 1.2E+02 0.0026 21.3 7.2 85 10-94 1-107 (132)
50 PHA03395 p10 fibrous body prot 42.2 62 0.0013 21.4 4.0 15 129-143 18-32 (87)
51 PF07897 DUF1675: Protein of u 41.6 29 0.00062 28.2 2.9 26 49-74 237-262 (284)
52 TIGR03017 EpsF chain length de 41.3 1.7E+02 0.0038 24.9 7.9 26 129-154 282-307 (444)
53 cd00193 t_SNARE Soluble NSF (N 40.6 73 0.0016 18.3 6.5 41 129-170 6-49 (60)
54 cd07603 BAR_ACAPs The Bin/Amph 40.3 1.7E+02 0.0036 22.4 6.9 74 107-180 39-116 (200)
55 PF08946 Osmo_CC: Osmosensory 37.5 80 0.0017 18.1 3.5 25 146-170 14-41 (46)
56 PHA01750 hypothetical protein 37.5 1E+02 0.0022 19.2 4.9 10 133-142 46-55 (75)
57 PF03607 DCX: Doublecortin; I 36.7 54 0.0012 19.7 3.0 47 26-72 9-58 (60)
58 TIGR01477 RIFIN variant surfac 36.5 83 0.0018 26.4 4.9 55 111-167 57-117 (353)
59 smart00397 t_SNARE Helical reg 35.4 95 0.0021 18.1 6.4 43 129-172 12-57 (66)
60 cd07642 BAR_ASAP2 The Bin/Amph 34.5 2.2E+02 0.0048 22.2 6.7 55 108-162 40-99 (215)
61 COG3524 KpsE Capsule polysacch 34.5 53 0.0011 27.1 3.4 18 129-146 230-247 (372)
62 TIGR01478 STEVOR variant surfa 34.3 73 0.0016 25.9 4.1 42 111-154 57-98 (295)
63 cd07601 BAR_APPL The Bin/Amphi 33.9 2.3E+02 0.0049 22.1 8.3 76 108-183 40-123 (215)
64 PF12325 TMF_TATA_bd: TATA ele 33.8 58 0.0013 22.9 3.2 26 128-153 95-120 (120)
65 KOG3003 Molecular chaperone of 33.6 2E+02 0.0043 22.7 6.3 46 130-176 72-119 (236)
66 PF11598 COMP: Cartilage oligo 33.3 99 0.0021 17.7 3.9 25 129-153 8-32 (45)
67 PF14662 CCDC155: Coiled-coil 31.0 2.2E+02 0.0048 21.8 6.0 51 132-183 39-95 (193)
68 PTZ00370 STEVOR; Provisional 31.0 53 0.0011 26.8 2.8 42 111-154 56-97 (296)
69 PF06008 Laminin_I: Laminin Do 30.0 2.2E+02 0.0048 22.6 6.4 55 131-185 54-110 (264)
70 PRK10884 SH3 domain-containing 30.0 2.6E+02 0.0056 21.6 7.0 9 131-139 109-117 (206)
71 PF13077 DUF3909: Protein of u 29.3 74 0.0016 20.8 2.8 36 49-84 70-108 (108)
72 PF11471 Sugarporin_N: Maltopo 29.3 77 0.0017 19.3 2.8 25 155-179 32-56 (60)
73 cd07636 BAR_GRAF The Bin/Amphi 29.1 2.7E+02 0.0059 21.5 8.7 53 108-160 40-101 (207)
74 PF02646 RmuC: RmuC family; I 28.8 2.7E+02 0.0058 22.8 6.7 40 130-169 21-62 (304)
75 cd01617 DCX Ubiquitin-like dom 28.8 1.6E+02 0.0035 18.7 5.5 49 25-73 25-78 (80)
76 PF01763 Herpes_UL6: Herpesvir 28.2 1.4E+02 0.0031 26.8 5.2 47 138-184 353-399 (557)
77 KOG3109 Haloacid dehalogenase- 27.9 68 0.0015 25.3 2.9 30 141-170 33-62 (244)
78 PF02646 RmuC: RmuC family; I 27.6 2.9E+02 0.0062 22.6 6.7 46 129-174 13-60 (304)
79 PF12579 DUF3755: Protein of u 27.3 51 0.0011 17.8 1.5 19 128-146 16-34 (35)
80 COG4051 Uncharacterized protei 27.3 2.1E+02 0.0045 21.7 5.2 28 13-40 3-32 (202)
81 PF05739 SNARE: SNARE domain; 26.6 1.4E+02 0.0031 17.5 7.1 39 129-168 4-45 (63)
82 PF11074 DUF2779: Domain of un 26.6 2.3E+02 0.005 20.0 5.3 81 52-147 27-117 (130)
83 PF06103 DUF948: Bacterial pro 25.7 1.9E+02 0.0042 18.6 8.2 13 130-142 34-46 (90)
84 PF05377 FlaC_arch: Flagella a 25.5 1.6E+02 0.0035 17.7 4.3 20 135-154 23-42 (55)
85 KOG0448 Mitofusin 1 GTPase, in 24.9 4.1E+02 0.0089 24.7 7.5 79 105-184 653-737 (749)
86 PF06825 HSBP1: Heat shock fac 24.6 1.6E+02 0.0036 17.5 4.3 34 138-171 15-51 (54)
87 PF05303 DUF727: Protein of un 24.4 1.7E+02 0.0037 20.0 4.2 45 50-94 40-97 (108)
88 PRK14891 50S ribosomal protein 24.4 86 0.0019 22.3 2.6 23 38-60 13-35 (131)
89 PF05542 DUF760: Protein of un 23.7 76 0.0016 20.7 2.2 25 130-154 14-39 (86)
90 KOG3065 SNAP-25 (synaptosome-a 23.2 3.1E+02 0.0067 22.2 6.0 50 130-180 219-271 (273)
91 KOG3684 Ca2+-activated K+ chan 23.1 2.2E+02 0.0047 25.0 5.3 34 137-170 424-463 (489)
92 PRK15041 methyl-accepting chem 23.0 4.5E+02 0.0098 23.3 7.6 55 129-183 468-524 (554)
93 cd07637 BAR_ACAP3 The Bin/Amph 23.0 3.5E+02 0.0076 20.7 7.3 51 108-158 40-93 (200)
94 cd07638 BAR_ACAP2 The Bin/Amph 22.8 3.6E+02 0.0077 20.7 8.7 71 108-178 40-114 (200)
95 PF04728 LPP: Lipoprotein leuc 22.7 1.9E+02 0.0041 17.4 5.7 33 129-161 17-51 (56)
96 PF05478 Prominin: Prominin; 22.4 6.3E+02 0.014 23.8 8.7 53 133-185 225-283 (806)
97 TIGR03545 conserved hypothetic 22.3 2.7E+02 0.0058 25.1 6.0 52 124-176 187-240 (555)
98 cd04769 HTH_MerR2 Helix-Turn-H 22.3 2.6E+02 0.0057 19.0 5.0 18 155-172 86-103 (116)
99 PHA02979 hypothetical protein; 22.3 1.5E+02 0.0033 20.6 3.4 31 44-74 60-90 (140)
100 PF13040 DUF3901: Protein of u 22.0 1.6E+02 0.0035 16.4 3.6 23 143-165 10-34 (40)
101 cd00223 TOPRIM_TopoIIB_SPO TOP 21.9 1.2E+02 0.0025 22.1 3.2 26 64-89 25-50 (160)
102 PRK00807 50S ribosomal protein 21.9 1.3E+02 0.0028 17.7 2.7 22 38-59 10-31 (52)
103 PF04210 MtrG: Tetrahydrometha 21.7 1.6E+02 0.0034 18.6 3.1 27 155-183 19-45 (70)
104 KOG3691 Exocyst complex subuni 21.4 4.4E+02 0.0095 25.3 7.1 24 68-91 41-64 (982)
105 PF12699 phiKZ_IP: phiKZ-like 21.3 3.2E+02 0.007 22.7 6.0 24 131-154 52-75 (339)
106 TIGR01005 eps_transp_fam exopo 21.3 5.4E+02 0.012 23.8 8.0 26 129-154 316-341 (754)
107 PF05384 DegS: Sensor protein 21.1 3.5E+02 0.0076 20.0 7.4 50 128-179 26-76 (159)
108 cd00472 Ribosomal_L24e_L24 Rib 20.4 1.4E+02 0.0029 17.8 2.6 22 38-59 12-33 (54)
109 PF14712 Snapin_Pallidin: Snap 20.4 2.5E+02 0.0055 18.1 6.1 15 129-143 35-49 (92)
110 PF09278 MerR-DNA-bind: MerR, 20.3 2E+02 0.0044 17.0 5.0 10 112-121 18-27 (65)
111 PF08700 Vps51: Vps51/Vps67; 20.3 2.4E+02 0.0052 17.8 6.2 44 134-177 35-80 (87)
112 COG1340 Uncharacterized archae 20.2 4.9E+02 0.011 21.4 6.9 58 128-185 137-195 (294)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-59 Score=341.97 Aligned_cols=184 Identities=60% Similarity=0.930 Sum_probs=178.1
Q ss_pred ceeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCC-CCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029729 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (189)
Q Consensus 4 ~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~-~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL 82 (189)
|+|+|+.||||++|||||++.+|||..++.++|+|+|++ +.|++|.+|+|+|||+.+||++|+||++++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 689999999999999999999999999999999999996 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHH
Q 029729 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYW 160 (189)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L 160 (189)
++|++.|.+.|++. ++++.+|+++.+|++.|.+.|++|.++|+ .|+|.+++.|++|||+||.+||||+|+ |+||.|
T Consensus 81 e~Ik~~F~k~YG~~-a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGG-AHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhccc-hhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 99999999999744 78899999999999999999999999998 699999999999999999999999999 999999
Q ss_pred HHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 161 SIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 161 ~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
++||++|+.+|..|++++++++|+| |+|+
T Consensus 159 VdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl 190 (217)
T KOG0859|consen 159 VDKTENLRSKSFDFRTQGRKLRRKMWFQNMKL 190 (217)
T ss_pred echhhhhhhhhHHHHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999 8885
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-35 Score=219.27 Aligned_cols=179 Identities=21% Similarity=0.361 Sum_probs=163.6
Q ss_pred eeEEEEEEeC--Ceeeeeeec-c--CCC----HHHHHHHHhcCCCCC-CCeeEEEecCeEEEEEEeCCEEEEEEecCCCC
Q 029729 5 SLIYAFVARG--NVVLAEYTE-F--SGN----FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (189)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~-~--~~~----~~~~~~~vL~ki~~~-~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~ 74 (189)
||++++|+|. ++|||...+ . +|+ +.+.++.+++++.+. ++++|++.+.|+|||++++|++|+|+||..||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 6899999995 599987654 1 232 577999999999985 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhCCCCCC-CCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029729 75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIG 153 (189)
Q Consensus 75 ~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il 153 (189)
+.+||.||+++.++|...|+..... ..+||++ .+|+++|++..+.|| |++.++++.++++++.+|+.||.+||+.+|
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~yn-d~r~~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYN-DTRSQRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999866555 6799999 999999999999996 566679999999999999999999999999
Q ss_pred H--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 154 G--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 154 ~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
. |.|+.|..++.+|+..|+..+++|+.++++-
T Consensus 159 ~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~s 192 (216)
T KOG0862|consen 159 QRGEVLNALSSMASELSSESRKYPKTAKGINRKS 192 (216)
T ss_pred hhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHH
Confidence 9 9999999999999999999999999999874
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-32 Score=196.71 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=148.6
Q ss_pred ceeEEEEEEeCC----eeeeeeecc-------CCCHHH----HHHHHhcCCCCCCCeeEEEecCeEEEEEE-eCCEEEEE
Q 029729 4 KSLIYAFVARGN----VVLAEYTEF-------SGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLV-DNGYTYCV 67 (189)
Q Consensus 4 ~~I~Ya~Iar~~----~iLae~~~~-------~~~~~~----~~~~vL~ki~~~~~k~s~~~~~~~~h~l~-~~~~~~l~ 67 (189)
|.|++..|-+.. .+|+..++- .|+..+ +++.+.++.+|+ +|++++.+.|.+|... .||+++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~ 79 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVL 79 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEE
Confidence 567788887752 566665542 244333 778999999995 9999999999999766 46999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHH
Q 029729 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (189)
Q Consensus 68 it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~ 147 (189)
++|.+||.|+||.+|.+|.++|....+...|....+.. .. -|.|...+.+| +||.+.|+|.++|+++||+|.||++
T Consensus 80 ~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~--~~-~~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhk 155 (198)
T KOG0861|consen 80 IADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETAD--LS-YPYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHK 155 (198)
T ss_pred EecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcC--CC-chhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998777667777332221 12 27899999999 8999999999999999999999999
Q ss_pred hHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhh
Q 029729 148 NIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGK 184 (189)
Q Consensus 148 Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~ 184 (189)
.|+.+|+ |+||+|+.||++|+.+|+.|+++|||.|+=
T Consensus 156 TiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~NsC 194 (198)
T KOG0861|consen 156 TIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNSC 194 (198)
T ss_pred HHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCCc
Confidence 9999999 999999999999999999999999998864
No 4
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.92 E-value=9.9e-24 Score=156.57 Aligned_cols=176 Identities=19% Similarity=0.244 Sum_probs=139.7
Q ss_pred eeEEEEEEeCC--eeeeeeec-cCCCH--HHHHHHHhcCCCC-CCCeeEEEecCeEEEEEEeC-CEEEEEEecCCCCccc
Q 029729 5 SLIYAFVARGN--VVLAEYTE-FSGNF--NSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQI 77 (189)
Q Consensus 5 ~I~Ya~Iar~~--~iLae~~~-~~~~~--~~~~~~vL~ki~~-~~~k~s~~~~~~~~h~l~~~-~~~~l~it~~~~~~~~ 77 (189)
.++|..+..+. .+|++-.+ .+..| ...+..+|.++.| ...+.+++.++|.|||+..+ |++|+|+|+++||.++
T Consensus 2 ~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~l 81 (190)
T COG5143 2 ASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKL 81 (190)
T ss_pred ceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhh
Confidence 34555555553 45554332 22233 3377888888877 34577888899999998865 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCC-CCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--
Q 029729 78 PMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG-- 154 (189)
Q Consensus 78 af~fL~~i~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~-- 154 (189)
||+.++.+..+|........+... .++.+ ..|++.+.+ .| ++|...|++.+++.+++|||.+|.+||+++|+
T Consensus 82 a~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ 156 (190)
T COG5143 82 AYGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRD 156 (190)
T ss_pred hhHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999887764443322 33444 566776666 27 67888899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 155 KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
|+|+.|+++|+.|..+|+.|++.|++.+..|
T Consensus 157 ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~ 187 (190)
T COG5143 157 EKLDLLVDLSSILLLSSKMFPKSAKKSNLCC 187 (190)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999998765
No 5
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.85 E-value=7.9e-21 Score=126.17 Aligned_cols=81 Identities=33% Similarity=0.705 Sum_probs=73.3
Q ss_pred HHHHHhcCCCCCC-CeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCccccc
Q 029729 31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109 (189)
Q Consensus 31 ~~~~vL~ki~~~~-~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~ 109 (189)
+|+.+|+++++.+ .|.+++.++|.||+++++|++|+|||+++||+++||.||++|+++|...|+.+.+.++.+|++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5889999999755 899999999999999999999999999999999999999999999999998667888889999 88
Q ss_pred hhH
Q 029729 110 FGP 112 (189)
Q Consensus 110 F~~ 112 (189)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 876
No 6
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7.8e-20 Score=124.99 Aligned_cols=62 Identities=31% Similarity=0.377 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
++++.++++||+||++||++||+|+|| |||++|++||+.|+++|..|++.|.+|||+| |+||
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km 94 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKM 94 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999999999 8885
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.69 E-value=2.2e-17 Score=110.91 Aligned_cols=61 Identities=30% Similarity=0.352 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCC
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCK 188 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k 188 (189)
+|++.++++++++|+++|.+||+++++ |+||.|+++|++|+++|..|+++|++++|+| |+|
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k 67 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYK 67 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999 9999999999999999999999999999998 655
No 8
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=95.88 E-value=0.014 Score=47.01 Aligned_cols=65 Identities=25% Similarity=0.373 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeC--CEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCC
Q 029729 29 NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGG 95 (189)
Q Consensus 29 ~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~--~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~~ 95 (189)
..+++.||-.=. ....+|.+++|..++...+ +++||+|-..-..-..+=.||+.|+..|...|..
T Consensus 5 n~LI~~vlleeR--~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~ 71 (279)
T PF04086_consen 5 NALIRDVLLEER--SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKN 71 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhheeec--cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhH
Confidence 345555553211 2445689999999887765 7999999998888777779999999999999963
No 9
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=95.74 E-value=0.016 Score=40.98 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHhcCCCC-CC---CeeEEEe-cCeEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 029729 31 IAYQCLQKLPA-SN---NKFTYNC-DAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (189)
Q Consensus 31 ~~~~vL~ki~~-~~---~k~s~~~-~~~~~h~l~---~~~~~~l~it~~~~~~~~af~fL~~i~~ 87 (189)
+-..|++++.| .+ +|+|... +||-.+|.. +++-+++|++..+.|+-+|...|.+++.
T Consensus 46 i~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 46 IHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 44677888877 22 4555554 999988877 4689999999999999999999999874
No 10
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.1 Score=45.02 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=64.1
Q ss_pred EEEEEEeCCeeeeeeeccCCCHHH----HHHHHhcCCCCCCCeeEEEecCeEEEEEEe--CCEEEEEEecCCCCcccHHH
Q 029729 7 IYAFVARGNVVLAEYTEFSGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLVD--NGYTYCVVADESSGRQIPMA 80 (189)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~~~----~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~--~~~~~l~it~~~~~~~~af~ 80 (189)
.++.+.+|..||+.|....-+|.. .++.+|-.=. .+--+++.+.|+..|-.+ -+++|+|+-.+-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er--~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER--GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh--cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 578889999999999865555544 4444443211 122236778888777554 47999999998888888889
Q ss_pred HHHHHHHHHHhhhCC
Q 029729 81 FLERVKDEFVSKYGG 95 (189)
Q Consensus 81 fL~~i~~~F~~~~~~ 95 (189)
||+.+.+.|...|..
T Consensus 82 ll~~v~~~f~e~~~~ 96 (587)
T KOG0781|consen 82 LLNDVLNLFREKYDT 96 (587)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999863
No 11
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=94.25 E-value=0.029 Score=42.37 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
+...++..+++++.+|..|||++++ ++...+.++.++|+.+++.|++-+-+....|
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~ 152 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKV 152 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999 8999999999999999999998888777666
No 12
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=92.81 E-value=2 Score=31.13 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=43.0
Q ss_pred CCeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCC-CCCCCCccccchhHHHHHHHH
Q 029729 43 NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKA-ATAPANGLNKEFGPKLKELMQ 119 (189)
Q Consensus 43 ~~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~-~~~~~~~l~~~F~~~l~~~~~ 119 (189)
.+-.+++.+.|..|++. -.|+-|+++||+..+. ..-.++..+.+.|..-...++. ....|.. +..|+..|.++++
T Consensus 65 ~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~-~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 65 SGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLEMPIR-CELFDTKLDQYVK 141 (142)
T ss_dssp -SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TTS-----HHHHHHHHHHHH
T ss_pred eeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCCCcEe-hHHHHHHHHHHHh
Confidence 35678889999999876 4899999999999863 4455666666666653322321 1112222 2456666666553
No 13
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=85.71 E-value=11 Score=26.93 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=59.8
Q ss_pred eeEEEEEEe--CCeeeeeeecc-CC-----CHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcc
Q 029729 5 SLIYAFVAR--GNVVLAEYTEF-SG-----NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQ 76 (189)
Q Consensus 5 ~I~Ya~Iar--~~~iLae~~~~-~~-----~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~ 76 (189)
||...+|.- |..+++-|-.. +. -++.....+..+-+. .--.+.++++.+-|..-+++.|+++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSK--QSPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSS--STSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccc--cceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 455555555 44777776432 11 133344444443221 223467889888888889999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhC
Q 029729 77 IPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 77 ~af~fL~~i~~~F~~~~~ 94 (189)
..+.||..+.+-+..-++
T Consensus 79 ~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 999999999988888664
No 14
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=82.94 E-value=6.8 Score=29.30 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhc
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFG 175 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~ 175 (189)
-..++.++|++++.-|.+.|+++=. ++||.+..++..|...+..+.
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~ 157 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLE 157 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999888 888888888888877666543
No 15
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=75.54 E-value=21 Score=24.57 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH------HHHhHHHHHHHHHHHhHHHhcc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG------KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~------e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
.++..++.+|+++++=|.+.-|+.=. .|+|.|+++...|.+....++-
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56788889999999999988888766 8899999998888766655543
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=74.85 E-value=20 Score=23.30 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccch
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGP 179 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~ 179 (189)
+++..++..+.+--+-+.++=+++=+ ++-+.|.+.|+....+|+..++...
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777 9999999999999999998877653
No 17
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=73.16 E-value=21 Score=25.87 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHhHHHhcc
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
..+|..++.+++++...|.+.|+.|=+ ..+..|..+.+.|...-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999988 8888999998888887776643
No 18
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.99 E-value=55 Score=27.42 Aligned_cols=85 Identities=11% Similarity=0.215 Sum_probs=59.3
Q ss_pred EEEEEeCCeeeeee-e-ccCCCHHHHHHHHhcCCCCCCCee-EEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHH
Q 029729 8 YAFVARGNVVLAEY-T-EFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLER 84 (189)
Q Consensus 8 Ya~Iar~~~iLae~-~-~~~~~~~~~~~~vL~ki~~~~~k~-s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~ 84 (189)
|..=.||.++++-. - +-.++..++.+.-+- ...+.+. ..+.++-+||+...+++-.++||.........|.||.+
T Consensus 6 fi~n~rGevlink~fr~dlkrs~~diFRv~vi--~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~k 83 (446)
T KOG0938|consen 6 FIYNLRGEVLINKTFRDDLKRSIVDIFRVQVI--NNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLYK 83 (446)
T ss_pred EEEeccCcEEEehhhhhhhhhhHHHHHHHhhh--hccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHHH
Confidence 33445788888754 2 344565555433221 1123333 33678899999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 029729 85 VKDEFVSKYG 94 (189)
Q Consensus 85 i~~~F~~~~~ 94 (189)
+-+-+..-++
T Consensus 84 l~avm~aYfg 93 (446)
T KOG0938|consen 84 LDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHhc
Confidence 9888877554
No 19
>smart00096 UTG Uteroglobin.
Probab=72.54 E-value=13 Score=23.40 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 114 LKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 114 l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
....++.||.+|...+...++++-+|....-=+.||-++|+
T Consensus 21 Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~ 61 (69)
T smart00096 21 YEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTE 61 (69)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566788888888888999999999877777777777776
No 20
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=72.43 E-value=13 Score=23.00 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 112 ~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
..+...++.||.+|.......++|+=+++...-=..|+-++|+
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 3566778889888888889999999998887766777777665
No 21
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=71.70 E-value=9.1 Score=23.79 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 112 ~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
...+..++.|+.+|.......++++-++....-=..||.++|+
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777889877877788999999999888888888888876
No 22
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.13 E-value=19 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVM 145 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im 145 (189)
+|+..++++|++++.-+
T Consensus 18 ~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 18 DKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 89999999998887766
No 23
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.06 E-value=52 Score=24.78 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=35.9
Q ss_pred CeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHh
Q 029729 44 NKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVS 91 (189)
Q Consensus 44 ~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~ 91 (189)
+...++.+.+..|+.. -.|+-|++|+++.. ..|=.+|+.|...|..
T Consensus 122 Gie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsD 168 (199)
T KOG3369|consen 122 GIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSD 168 (199)
T ss_pred ceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHH
Confidence 5566777899877665 58999999999887 4677888888877755
No 24
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=64.03 E-value=11 Score=24.64 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 155 KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
-.||.|++|++.|...-..+-...|..++.+
T Consensus 40 s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 40 SCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555555555443
No 25
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.00 E-value=27 Score=26.77 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHHHHHH-----HHHhHHHHH
Q 029729 136 AQVSEVKGVMMENIEKIGG-----KRLSYWSIR 163 (189)
Q Consensus 136 ~~v~~v~~im~~Ni~~il~-----e~l~~L~~k 163 (189)
..++-+.++|.++||..|+ |.-|+|+.+
T Consensus 133 e~Mdm~~Emm~daIDdal~~~edEEEtd~lvnq 165 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQ 165 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 3456788999999999995 556666654
No 26
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=60.44 E-value=27 Score=26.47 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhc---CChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHhHHHHH
Q 029729 111 GPKLKELMQYCV---DHPEEISKLAKVKAQVSEVKGVMMENIEKIGG----KRLSYWSIR 163 (189)
Q Consensus 111 ~~~l~~~~~~yn---~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~----e~l~~L~~k 163 (189)
-|.+.++++.|. ..|...+.+.+..++++++-+.+.+++++-++ +.+++|...
T Consensus 135 Lp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d~~dl~~e 194 (199)
T PF10112_consen 135 LPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDDIMDLDTE 194 (199)
T ss_pred hhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 366667776663 12333366666666677776666666666666 555555443
No 27
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=60.31 E-value=40 Score=23.71 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhH
Q 029729 133 KVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRH 171 (189)
Q Consensus 133 ~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s 171 (189)
++..+|.++.+-|.+-.++|-. ++++....+++.|..-|
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiA 43 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIA 43 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 4455555555555544444444 55555555555555433
No 28
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=56.73 E-value=61 Score=27.83 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCC-CCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029729 28 FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 28 ~~~~~~~vL~ki~~-~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
+-.+...++.-... ++.-.++..++..|.|+..+.+.++||+..+-+...-..-|+-+.....+..+
T Consensus 37 ~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 37 LMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 44455555543332 34556778899999999999999999999998877777888888877776554
No 29
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=55.68 E-value=78 Score=24.50 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCC-ccccchhHHHHHHHHHhcCCh---------hhhHHHHHHHHHHHHHHHHHHH
Q 029729 78 PMAFLERVKDEFVSKYGGGKAATAPAN-GLNKEFGPKLKELMQYCVDHP---------EEISKLAKVKAQVSEVKGVMME 147 (189)
Q Consensus 78 af~fL~~i~~~F~~~~~~~~~~~~~~~-~l~~~F~~~l~~~~~~yn~~~---------~~~dkl~~~~~~v~~v~~im~~ 147 (189)
+..||++|-.......... ..| .-+..|...|.++-.++..++ .+..+.+++-++|++-+.+|.+
T Consensus 14 t~~~ik~liK~c~~li~A~-----k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 14 TNKFIKELIKDGSLLIGAL-----RNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888777665533210 111 113678888888887765444 2446788999999999999999
Q ss_pred hHHHHHHHHHhHH
Q 029729 148 NIEKIGGKRLSYW 160 (189)
Q Consensus 148 Ni~~il~e~l~~L 160 (189)
|++.++-..|+.+
T Consensus 89 ~~~~~l~~pL~~f 101 (207)
T cd07634 89 NANDVLIAPLEKF 101 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988555555
No 30
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=54.87 E-value=59 Score=21.38 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhHHHh
Q 029729 135 KAQVSEVKGVMMENIEKIGGKRLSYWSIRLRTFISRHKTF 174 (189)
Q Consensus 135 ~~~v~~v~~im~~Ni~~il~e~l~~L~~kt~~L~~~s~~f 174 (189)
-+.+..++..|.+.+++- +..++.|.+.|+.|......|
T Consensus 7 T~~L~rt~~~m~~ev~~s-~~t~~~L~~Ss~~L~~~~~e~ 45 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERS-ELTLQTLEESSATLRSTNDEY 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH
Confidence 344444555555544432 244444445555554444433
No 31
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=54.54 E-value=66 Score=21.90 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 84 RVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 84 ~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+.+++|...+... ..+. .+....|......|+ . .+.+.....++..-+.-+.+|+..++.
T Consensus 2 ea~~ef~~I~~n~------~lt~-~e~~~~l~~Wa~~~~-v---~~~~~~f~~~~~~~~~~~~~~~~~vi~ 61 (113)
T PF02520_consen 2 EARKEFFQIFQNP------NLTK-AEIEEQLDEWAEKYG-V---QDQYNEFKAQVQAQKEEVRKNVTAVIS 61 (113)
T ss_pred hHHHHHHHHHcCC------CCCH-HHHHHHHHHHHHHCC-c---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567887777421 1222 455666777777774 2 378999999999889999999988888
No 32
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=54.26 E-value=45 Score=26.32 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred cceeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCCCCeeEEEecCeEE
Q 029729 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTF 55 (189)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~~~k~s~~~~~~~~ 55 (189)
|.+|-|..|+.-...+......-..+-.++..+|..-..+ .+..++.++|.|
T Consensus 28 pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~nYHw 79 (249)
T PF11675_consen 28 PKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGNYHW 79 (249)
T ss_pred CCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCceEE
Confidence 5689999999876666655544556888999999876654 788888888765
No 33
>PHA03386 P10 fibrous body protein; Provisional
Probab=52.85 E-value=43 Score=22.36 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFIS 169 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~ 169 (189)
+|+..+|.+|++++.- .++ |+ +.|+.|..+-++.++
T Consensus 19 ~KVdaLQ~qV~dv~~n----~~~-LDa~~~qL~~l~tkV~~Iq~ 57 (94)
T PHA03386 19 TKVDALQTQLNGLEED----SQP-LDGLPAQLTELDTKVSDIQS 57 (94)
T ss_pred hHHHHHHHHHHHHHhc----chh-hhhHHHHHHHHHHHHHHHHH
Confidence 7999999999999854 444 44 788888777776654
No 34
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=52.83 E-value=50 Score=20.01 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
.+.|.....-++++.++-.+-.+.+-. +.|.....|..++...-..=.+--+++.|
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 367888888999999999998888888 88888888888877655444333333333
No 35
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.71 E-value=67 Score=20.26 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 127 EISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 127 ~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
+.|.|+-++-+|++.|+-=..=-+.+=+ ...+.|+...+.|...-...+-.-+.|--+|
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4588999999999988753322233333 7788888888888887777776666655554
No 36
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=47.09 E-value=52 Score=18.52 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhHHH-------HHH--HHHhHHHHH
Q 029729 134 VKAQVSEVKGVMMENIEK-------IGG--KRLSYWSIR 163 (189)
Q Consensus 134 ~~~~v~~v~~im~~Ni~~-------il~--e~l~~L~~k 163 (189)
+..+|+..+.-|.+-+++ +++ ..||.|..+
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI~~ 40 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLINE 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 456666666666666654 555 666666544
No 37
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.93 E-value=11 Score=36.19 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.3
Q ss_pred HHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 150 EKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 150 ~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
+.+.+ |+|+.++++|++|++++.+|-..|.++--++
T Consensus 948 ~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~ 985 (993)
T KOG1983|consen 948 QPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKY 985 (993)
T ss_pred hhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhh
Confidence 34455 7999999999999999999999999887776
No 38
>PTZ00046 rifin; Provisional
Probab=46.62 E-value=50 Score=27.77 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCChhhhHHHHHH----HHHHHHHHHHHHHhHHHHHH-HHHhH-HHHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAKV----KAQVSEVKGVMMENIEKIGG-KRLSY-WSIRLRTF 167 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~----~~~v~~v~~im~~Ni~~il~-e~l~~-L~~kt~~L 167 (189)
+|.+++.|+.|+. .++ +...+- +..-..=|+-.-++|+||+- ++||. |.+|=..|
T Consensus 54 DPeMK~Vme~F~r-qTs-QRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL 114 (358)
T PTZ00046 54 DPEMKSVMENFDR-QTS-QRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATL 114 (358)
T ss_pred cHHHHHHHHHHhH-HHH-HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhc
Confidence 6899999999953 332 455444 44444455666678999999 99986 44443333
No 39
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.15 E-value=1.5e+02 Score=23.53 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=5.1
Q ss_pred HHhHHHHHHHHHH
Q 029729 156 RLSYWSIRLRTFI 168 (189)
Q Consensus 156 ~l~~L~~kt~~L~ 168 (189)
.|+.+..|-+.++
T Consensus 221 ~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 221 NLEDLEKKKQELS 233 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344434333
No 40
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=45.61 E-value=77 Score=20.04 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhHHHhcc
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
.|.+|..++.++...|.+.=.=+| ..+|.+-.+-.++.+.|..|+=
T Consensus 18 ~L~~I~~~~~~i~~~ld~~~~ClL-~e~e~i~~~f~~~q~~AssyYL 63 (70)
T PF10372_consen 18 YLEQIEEEISQIIQTLDEDDCCLL-CEFEEIREKFLDIQTLASSYYL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHTT-TT--GG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCceec-hhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444332211111 6788888888888888887753
No 41
>PHA01811 hypothetical protein
Probab=45.44 E-value=28 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.2
Q ss_pred CCeeEEEecCeEEEEEEeC
Q 029729 43 NNKFTYNCDAHTFNYLVDN 61 (189)
Q Consensus 43 ~~k~s~~~~~~~~h~l~~~ 61 (189)
+.-.+....||.+||+-++
T Consensus 4 ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred ccEEEEEEeeEEEEEEcCc
Confidence 3557788899999999864
No 42
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=45.26 E-value=1e+02 Score=21.46 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCCeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHh
Q 029729 42 SNNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVS 91 (189)
Q Consensus 42 ~~~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~ 91 (189)
+.++..+..+++..|+.. ..|.-|+.++.+.. ...+|+ |+.+...|..
T Consensus 56 ssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t-~na~~q-l~kiY~lYsd 104 (134)
T COG5122 56 SSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRT-VNALFQ-LQKIYSLYSD 104 (134)
T ss_pred CCceEEEEeccEEEEEEEecCCcEEEEEecCCc-hhHHHH-HHHHHHHHHH
Confidence 347777788999888765 57999999994332 233444 4445544443
No 43
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.21 E-value=1.4e+02 Score=22.96 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHHhcCChh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH-HHHHHHhHHHhcccchhhh
Q 029729 108 KEFGPKLKELMQYCVDHPE---EISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSIR-LRTFISRHKTFGVRGPKCG 182 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~~---~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~k-t~~L~~~s~~f~~~a~~l~ 182 (189)
..|...|.++-.++..||. .-.+.+.+-++|++-+..|.+|++.+|-..|+.++.- -....+.-+.|-|.+.++-
T Consensus 40 ~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d 118 (200)
T cd07639 40 RAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLE 118 (200)
T ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHH
Confidence 5577777777666655652 3355667778888888888888888777555555431 1234455556666655543
No 44
>PHA03011 hypothetical protein; Provisional
Probab=43.86 E-value=1e+02 Score=20.95 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTF 167 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L 167 (189)
...+.++.-+||. -.|...-+..++.+...+..+|.|.+.- ..+|.|.+.-.+|
T Consensus 63 ~e~ldeL~~qYN~---L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYNE---LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777853 2478888999999999999999999988 7777776655444
No 45
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.35 E-value=35 Score=27.96 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCChhhhHHHHHHH----HHHHHHHHHHHHhHHHHHH-HHHh--HHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAKVK----AQVSEVKGVMMENIEKIGG-KRLS--YWSIRLR 165 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~~----~~v~~v~~im~~Ni~~il~-e~l~--~L~~kt~ 165 (189)
+|.++++|+.|+. .++ ....+=. ..-..-|+..-++|+|++- ++|| .|.+|.|
T Consensus 34 DPeMK~Vme~F~r-qTs-QRF~EYdErm~~kRqkcKEqcDKeIQKIIlKDKiEKKSladKvE 93 (299)
T PF02009_consen 34 DPEMKSVMENFDR-QTS-QRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKIEKKSLADKVE 93 (299)
T ss_pred cHHHHHHHHHHHH-HHH-HHHHHHHhhhhhhHHHHHHHhccccceeecccchhhhhHHHHHH
Confidence 6899999999953 222 4454433 4445566667778888888 8888 5666654
No 46
>PHA02557 22 prohead core protein; Provisional
Probab=43.25 E-value=1.4e+02 Score=24.13 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHH-HHhcCCh-hhhHHHHHHHHHHHHHHHHHHHhHHHHHH-
Q 029729 78 PMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELM-QYCVDHP-EEISKLAKVKAQVSEVKGVMMENIEKIGG- 154 (189)
Q Consensus 78 af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~-~~yn~~~-~~~dkl~~~~~~v~~v~~im~~Ni~~il~- 154 (189)
+=+||+.+-.+|...-... ........+..+|-.-|+.+. .++-.-| ...|-+..+..+|++-..-...-++...+
T Consensus 89 vd~~l~~~~~eW~~ENk~A-v~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLA-VDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888887643211 111223334345555566655 4443445 34578889999999888877777777766
Q ss_pred -------HHHhHHHHHHHHHHHhHH
Q 029729 155 -------KRLSYWSIRLRTFISRHK 172 (189)
Q Consensus 155 -------e~l~~L~~kt~~L~~~s~ 172 (189)
.|-..+...|.+|.++.+
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtdsQk 192 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTESQK 192 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHHHH
Confidence 444556667777776543
No 47
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=72 Score=26.95 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=30.8
Q ss_pred EEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029729 58 LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 58 l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
...+++.|++++..+.|--.++.||..|.+-|..-|+
T Consensus 60 v~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 60 VYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 3467888888888888888899999999998888665
No 48
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.61 E-value=1.3e+02 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=15.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHH
Q 029729 124 HPEEISKLAKVKAQVSEVKGVMM 146 (189)
Q Consensus 124 ~~~~~dkl~~~~~~v~~v~~im~ 146 (189)
.|+. .+|.++.+||.+++.-|.
T Consensus 85 ~pD~-~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 85 PPDS-SKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHH
Confidence 3443 678888888888876443
No 49
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=42.43 E-value=1.2e+02 Score=21.34 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=48.2
Q ss_pred EEEeCCeeeeeeec--cCCC--------HHH---HHHHHhcCCCCC---C--CeeEEEecCeE-EEEEEeCCEEEEEEec
Q 029729 10 FVARGNVVLAEYTE--FSGN--------FNS---IAYQCLQKLPAS---N--NKFTYNCDAHT-FNYLVDNGYTYCVVAD 70 (189)
Q Consensus 10 ~Iar~~~iLae~~~--~~~~--------~~~---~~~~vL~ki~~~---~--~k~s~~~~~~~-~h~l~~~~~~~l~it~ 70 (189)
.|++.+.+|.+++- .+.. +.- .+..+++...+. + -+.....+++. |.|....++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 47788888877642 2221 222 334444432221 1 24455667874 5677778888888887
Q ss_pred ---CCCCcccHHHHHHHHHHHHHhhhC
Q 029729 71 ---ESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 71 ---~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
......-.-.|..+|+..|.....
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~ 107 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALC 107 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHcc
Confidence 455566688999999999988663
No 50
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.17 E-value=62 Score=21.37 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKG 143 (189)
Q Consensus 129 dkl~~~~~~v~~v~~ 143 (189)
+|+..++.+|++++.
T Consensus 18 ~KVdalQ~~V~~l~~ 32 (87)
T PHA03395 18 DKVDALQAAVDDVRA 32 (87)
T ss_pred hHHHHHHHHHHHHHh
Confidence 789999999999864
No 51
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=41.62 E-value=29 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=21.6
Q ss_pred EecCeEEEEEEeCCEEEEEEecCCCC
Q 029729 49 NCDAHTFNYLVDNGYTYCVVADESSG 74 (189)
Q Consensus 49 ~~~~~~~h~l~~~~~~~l~it~~~~~ 74 (189)
+++|++|-|-..+++.++|||+-.+-
T Consensus 237 ~i~g~ly~y~~~~~v~i~c~chg~~~ 262 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEVRIVCVCHGSFL 262 (284)
T ss_pred eeeEEEEEecCCCeEEEEEEecCCCC
Confidence 46789998866789999999998764
No 52
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.31 E-value=1.7e+02 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
.++..++.++++++.-..+.+.++..
T Consensus 282 P~v~~l~~~i~~l~~~l~~e~~~~~~ 307 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLNAEIKKVTS 307 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999988888888777765
No 53
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=40.55 E-value=73 Score=18.33 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHh
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISR 170 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~ 170 (189)
+.+..+...|.+++++.. .|...+. +.|+.+....+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~-~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFL-DLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999988855 7777776 6677777666655544
No 54
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.26 E-value=1.7e+02 Score=22.42 Aligned_cols=74 Identities=14% Similarity=0.283 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHHHhcCCh---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH-HHHHHHhHHHhcccchh
Q 029729 107 NKEFGPKLKELMQYCVDHP---EEISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSIR-LRTFISRHKTFGVRGPK 180 (189)
Q Consensus 107 ~~~F~~~l~~~~~~yn~~~---~~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~k-t~~L~~~s~~f~~~a~~ 180 (189)
+..|...|.++-.++.+|| ..-.+....-+++..-+.+|.+|++.++-+.|+..+.. -....+.-+.|-+.+.+
T Consensus 39 ~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~ 116 (200)
T cd07603 39 NSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDD 116 (200)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3667888888877775554 23355677778888888888888888877555543321 12233344445444443
No 55
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=37.54 E-value=80 Score=18.12 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.8
Q ss_pred HHhHHHHHH---HHHhHHHHHHHHHHHh
Q 029729 146 MENIEKIGG---KRLSYWSIRLRTFISR 170 (189)
Q Consensus 146 ~~Ni~~il~---e~l~~L~~kt~~L~~~ 170 (189)
.+||+.=++ +.|..|+.|-+.|.++
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555 6677777776666543
No 56
>PHA01750 hypothetical protein
Probab=37.46 E-value=1e+02 Score=19.18 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 029729 133 KVKAQVSEVK 142 (189)
Q Consensus 133 ~~~~~v~~v~ 142 (189)
.+..++++++
T Consensus 46 NL~~ei~~~k 55 (75)
T PHA01750 46 NLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 57
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=36.71 E-value=54 Score=19.73 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhcCCCC-CCCeeEEEecCeEEEEEE--eCCEEEEEEecCC
Q 029729 26 GNFNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLV--DNGYTYCVVADES 72 (189)
Q Consensus 26 ~~~~~~~~~vL~ki~~-~~~k~s~~~~~~~~h~l~--~~~~~~l~it~~~ 72 (189)
.+|+.+...+=+++.. ..-|..|+.+|.-++-+. .+|-.|+|...+.
T Consensus 9 ~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp SSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred cCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 5788888888888875 347788888886665443 3788899986653
No 58
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=36.45 E-value=83 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCChhhhHHHHH----HHHHHHHHHHHHHHhHHHHHH-HHHhH-HHHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAK----VKAQVSEVKGVMMENIEKIGG-KRLSY-WSIRLRTF 167 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~----~~~~v~~v~~im~~Ni~~il~-e~l~~-L~~kt~~L 167 (189)
+|.+++.|+.|+. .++ +...+ .+..-..=|+-.-++|+||+- ++||. |.+|=..|
T Consensus 57 DPeMK~Vm~nF~r-qTs-QRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEKeL~ekf~tL 117 (353)
T TIGR01477 57 DPEMKSVMEQFDR-QTS-QRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEKELTEKFSTL 117 (353)
T ss_pred cHHHHHHHHHHhH-HHH-HHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHHHHHHhhhhc
Confidence 6889999998853 232 44443 344444455666678999988 88886 44443333
No 59
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=35.35 E-value=95 Score=18.15 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHhHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISRHK 172 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~s~ 172 (189)
+.+..+...+.+++++.. .|...++ +.|+.+....+.....-.
T Consensus 12 ~~l~~l~~~i~~l~~l~~-~i~~~v~~Q~~~ld~i~~~~d~~~~~~~ 57 (66)
T smart00397 12 EELEQLEKSIGELKQIFL-DMGTELEEQGEQLDRIEDNVDDADVNLK 57 (66)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 678899999999999866 6666665 777777777666555433
No 60
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=34.53 E-value=2.2e+02 Score=22.18 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=37.2
Q ss_pred cchhHHHHHHHHH--hcCCh---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 029729 108 KEFGPKLKELMQY--CVDHP---EEISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSI 162 (189)
Q Consensus 108 ~~F~~~l~~~~~~--yn~~~---~~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~ 162 (189)
..|...|.++=.+ +++|| +.-.+++.+..+|.....+..+|+..++.-.|+.++.
T Consensus 40 ~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK 99 (215)
T cd07642 40 EQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLK 99 (215)
T ss_pred HHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4577777777665 55555 2345678888888888888888888887744444443
No 61
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.51 E-value=53 Score=27.10 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMM 146 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~ 146 (189)
+.|..++.+++.|+.+|.
T Consensus 230 ~eL~~iqaqL~tvks~m~ 247 (372)
T COG3524 230 DELIVIQAQLDTVKSVMN 247 (372)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778999999999999993
No 62
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.30 E-value=73 Score=25.95 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+|.++++|+.+|. ++-.|..+..+--++.++.|.+|=.|.-+
T Consensus 57 DpEmK~iid~~n~--eaikkyqqT~~~f~e~~e~~~k~~~K~k~ 98 (295)
T TIGR01478 57 DPELKEIIDKLNE--EAIKKYQETHDPYEQLQELVEKNRTKSTG 98 (295)
T ss_pred cHHHHHHHHHHhH--HHhhhhhhhcchHHHHHHHHHhcCCcccc
Confidence 5888888888853 44567777777788888888877766665
No 63
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.87 E-value=2.3e+02 Score=22.08 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHH----hcCCh---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHhHHHhcccch
Q 029729 108 KEFGPKLKELMQY----CVDHP---EEISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWS-IRLRTFISRHKTFGVRGP 179 (189)
Q Consensus 108 ~~F~~~l~~~~~~----yn~~~---~~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~-~kt~~L~~~s~~f~~~a~ 179 (189)
..|...|+++-++ ..+|| +...+.+.+-++|.+-+.+|.+|++..|-..|+..+ +--....+.=+.|-+.+.
T Consensus 40 ~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~ 119 (215)
T cd07601 40 QALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASN 119 (215)
T ss_pred HHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 5577777777544 43444 233566777888888899999999888875555544 222233344445555544
Q ss_pred hhhh
Q 029729 180 KCGG 183 (189)
Q Consensus 180 ~l~r 183 (189)
+...
T Consensus 120 ~~d~ 123 (215)
T cd07601 120 DHDG 123 (215)
T ss_pred HHHH
Confidence 4433
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.79 E-value=58 Score=22.85 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIG 153 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il 153 (189)
...+..++.+|.|+|+.+..-|+.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36789999999999999999888764
No 65
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=2e+02 Score=22.73 Aligned_cols=46 Identities=15% Similarity=0.006 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
++..+...+.--+++ .+=-|+++. -..++|.++|....+.|+.|..
T Consensus 72 e~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~Fai 119 (236)
T KOG3003|consen 72 EKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAI 119 (236)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 333344433 4445555555555555555443
No 66
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=33.26 E-value=99 Score=17.72 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIG 153 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il 153 (189)
..+..+.+-+.++|+.|.+.+..+-
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~~ 32 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKETR 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888877654
No 67
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.97 E-value=2.2e+02 Score=21.77 Aligned_cols=51 Identities=4% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH------HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 132 AKVKAQVSEVKGVMMENIEKIGG------KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 132 ~~~~~~v~~v~~im~~Ni~~il~------e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
.++..++.+.+.-|. .+...++ +.|++|-.-...|.........+++.+.+
T Consensus 39 a~L~~e~~~L~~q~~-s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 39 AQLAEEITDLRKQLK-SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554 2244444 67777777777777777777777766655
No 68
>PTZ00370 STEVOR; Provisional
Probab=30.96 E-value=53 Score=26.77 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 111 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+|.++++|+.+|. ++-.|..+..+--++.++.|.+|=.|.-+
T Consensus 56 DpemK~i~d~~n~--eaikkyqqT~~~f~e~~e~~~k~~~K~k~ 97 (296)
T PTZ00370 56 DPELKEIIDKMNE--EAIKKYQQTHDPYEQLKEVVEKNGTKYTG 97 (296)
T ss_pred cHHHHHHHHHHhH--HHhhhhhhhcchHHHHHHHHHhcCCcccc
Confidence 4677777777642 33455666666666666666666544443
No 69
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.98 E-value=2.2e+02 Score=22.56 Aligned_cols=55 Identities=7% Similarity=-0.051 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 131 LAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 131 l~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
+..+..+++..+.-...+..+.-. ...+.+..++.+|.............+-.++
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555 6666666777777766666666555554443
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.95 E-value=2.6e+02 Score=21.56 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 029729 131 LAKVKAQVS 139 (189)
Q Consensus 131 l~~~~~~v~ 139 (189)
+..+.++.+
T Consensus 109 l~~~~~~~~ 117 (206)
T PRK10884 109 LNNIDNTWN 117 (206)
T ss_pred HHHHHhHHH
Confidence 333333333
No 71
>PF13077 DUF3909: Protein of unknown function (DUF3909)
Probab=29.33 E-value=74 Score=20.83 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred EecCeEEEEEE-eCCEEEEEEecCCC--CcccHHHHHHH
Q 029729 49 NCDAHTFNYLV-DNGYTYCVVADESS--GRQIPMAFLER 84 (189)
Q Consensus 49 ~~~~~~~h~l~-~~~~~~l~it~~~~--~~~~af~fL~~ 84 (189)
..++...+... -+|++++.|+-..- .-.--|+||++
T Consensus 70 drdgi~lym~aeidg~~~vsvsy~edalhlqelfqflee 108 (108)
T PF13077_consen 70 DRDGIDLYMHAEIDGVCYVSVSYSEDALHLQELFQFLEE 108 (108)
T ss_pred cccceeEEEEeeeccEEEEEEeechhhHHHHHHHHHhhC
Confidence 33555443333 37999998874333 33446777653
No 72
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.28 E-value=77 Score=19.31 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHhHHHhcccch
Q 029729 155 KRLSYWSIRLRTFISRHKTFGVRGP 179 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~~f~~~a~ 179 (189)
+||..|+.+-++....+...+..++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 73
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=29.08 E-value=2.7e+02 Score=21.53 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHhcCCh---------hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 029729 108 KEFGPKLKELMQYCVDHP---------EEISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYW 160 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~---------~~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L 160 (189)
..|...|.++-.+|..++ ....+...+-++|++=+.+|.++.+..|-..|+..
T Consensus 40 ~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F 101 (207)
T cd07636 40 RKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKF 101 (207)
T ss_pred HHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776665444 23346678888899999999999888777444444
No 74
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.84 E-value=2.7e+02 Score=22.76 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHH
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFIS 169 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~ 169 (189)
+|.+...+..+-..-+.++|..+-+ .+++.|...+.+|..
T Consensus 21 ~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 21 RLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTS 62 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444444445555555554 455555555555543
No 75
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=28.81 E-value=1.6e+02 Score=18.74 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhcCCCC--CCCeeEEEecC-eEEEEEE--eCCEEEEEEecCCC
Q 029729 25 SGNFNSIAYQCLQKLPA--SNNKFTYNCDA-HTFNYLV--DNGYTYCVVADESS 73 (189)
Q Consensus 25 ~~~~~~~~~~vL~ki~~--~~~k~s~~~~~-~~~h~l~--~~~~~~l~it~~~~ 73 (189)
-.+|+.+...+-+++.+ ..-+..++.++ ....-+. ++|-.|+|...+.+
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 46899988888888874 56688888877 5544332 57999999876654
No 76
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.18 E-value=1.4e+02 Score=26.80 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHhHHHhcccchhhhhh
Q 029729 138 VSEVKGVMMENIEKIGGKRLSYWSIRLRTFISRHKTFGVRGPKCGGK 184 (189)
Q Consensus 138 v~~v~~im~~Ni~~il~e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~ 184 (189)
=++++.....+|.|.|++.|.++.+--++|...-..|.++-+.++..
T Consensus 353 ~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~ 399 (557)
T PF01763_consen 353 QQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESE 399 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999888888888888888888877776666544
No 77
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=27.86 E-value=68 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHh
Q 029729 141 VKGVMMENIEKIGGKRLSYWSIRLRTFISR 170 (189)
Q Consensus 141 v~~im~~Ni~~il~e~l~~L~~kt~~L~~~ 170 (189)
++..|.+||.+-+.++|....++++.|...
T Consensus 33 i~~~~~~nI~~f~~eklgi~~e~a~~L~~~ 62 (244)
T KOG3109|consen 33 IQLMMRNNIQEFFVEKLGISEEEAEELRES 62 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhHHHHHH
Confidence 467899999999999999999998888754
No 78
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=27.60 E-value=2.9e+02 Score=22.58 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHh
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTF 174 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f 174 (189)
+++..+++.|+++..--.+....+-+ +.|..+....++|+..+...
T Consensus 13 e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L 60 (304)
T PF02646_consen 13 EQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45666777777766666666666555 55555555556666665543
No 79
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=27.28 E-value=51 Score=17.79 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029729 128 ISKLAKVKAQVSEVKGVMM 146 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~ 146 (189)
.|+|..+..++.++-++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 3777788888887777775
No 80
>COG4051 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.26 E-value=2.1e+02 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=20.5
Q ss_pred eCCeeeeeeeccCCC--HHHHHHHHhcCCC
Q 029729 13 RGNVVLAEYTEFSGN--FNSIAYQCLQKLP 40 (189)
Q Consensus 13 r~~~iLae~~~~~~~--~~~~~~~vL~ki~ 40 (189)
++.+|++++++.+|. +..+++..|.-+.
T Consensus 3 ~g~~ivV~~~dk~gae~Y~kIir~al~dL~ 32 (202)
T COG4051 3 SGETIVVECADKSGAEFYRKIIRDALADLK 32 (202)
T ss_pred CCceEEEEecChhhhHHHHHHHHHHHHHhc
Confidence 456899999987764 6677777777544
No 81
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=26.62 E-value=1.4e+02 Score=17.52 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFI 168 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~ 168 (189)
+.|..|.+.|.++++++. .|...++ +-||.|.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~-~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQ-DIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHCHhhHHHHHHHHHHHH
Confidence 678888889998888665 4666666 66666666555443
No 82
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=26.58 E-value=2.3e+02 Score=20.05 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=42.3
Q ss_pred CeEEEEEEeCCE--------EEEEEecCCCCcc-cHHHHHHHHHHHHHhhhCCCCCCCCCCCccccchhH-HHHHHHHHh
Q 029729 52 AHTFNYLVDNGY--------TYCVVADESSGRQ-IPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGP-KLKELMQYC 121 (189)
Q Consensus 52 ~~~~h~l~~~~~--------~~l~it~~~~~~~-~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~-~l~~~~~~y 121 (189)
+++.|....+|+ -|++ .....|++ .+-.+++.|-... + . -. ..+..|.. .|+++.+.+
T Consensus 27 Q~Slhi~~~~g~~~~~~~h~efL~-~~~~DPr~~~~~~L~~~i~~~~----g-~----iv--vyN~sfE~~rL~ela~~~ 94 (130)
T PF11074_consen 27 QFSLHITDNDGIIYKELEHVEFLA-DPGEDPRRELIEALIKAIGSIY----G-S----IV--VYNKSFEKTRLKELAELF 94 (130)
T ss_pred EEEEEEEcCCCcccCchhhHHHhc-cCCCCchHHHHHHHHHHhhhhc----C-e----EE--EechHHHHHHHHHHHHHh
Confidence 467777776663 3444 22344544 3444444444332 1 1 11 22345664 445555554
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHH
Q 029729 122 VDHPEEISKLAKVKAQVSEVKGVMME 147 (189)
Q Consensus 122 n~~~~~~dkl~~~~~~v~~v~~im~~ 147 (189)
|+-.++|..+.+.+-|.......
T Consensus 95 ---p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 95 ---PDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44457788887777776665544
No 83
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.71 E-value=1.9e+02 Score=18.63 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 029729 130 KLAKVKAQVSEVK 142 (189)
Q Consensus 130 kl~~~~~~v~~v~ 142 (189)
-+..++.+++.+.
T Consensus 34 ti~~l~~~~~~i~ 46 (90)
T PF06103_consen 34 TIDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHHhHHHHH
Confidence 3445555555444
No 84
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.48 E-value=1.6e+02 Score=17.66 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 029729 135 KAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 135 ~~~v~~v~~im~~Ni~~il~ 154 (189)
.++|.+.-+-+.+||.++|.
T Consensus 23 n~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444567788888887
No 85
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=4.1e+02 Score=24.71 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHH---HHHHHHHhHHHhcccc
Q 029729 105 GLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSI---RLRTFISRHKTFGVRG 178 (189)
Q Consensus 105 ~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~---kt~~L~~~s~~f~~~a 178 (189)
++-.+|...+++.++... +-....=..+++++++.|-.+....|+.+=+ +++..+-. .-+......+-|+..|
T Consensus 653 alk~q~~~~~~kkLq~~~-~~h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~~K~~~~ka 731 (749)
T KOG0448|consen 653 ALKVQFVNHLKKKLQEFD-DSHTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSRLKFFRSKA 731 (749)
T ss_pred hhHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343556666666665442 1111122345555555555555544444433 22222222 2233334555555555
Q ss_pred hhhhhh
Q 029729 179 PKCGGK 184 (189)
Q Consensus 179 ~~l~r~ 184 (189)
..+.+.
T Consensus 732 ~~l~~e 737 (749)
T KOG0448|consen 732 LKLEYE 737 (749)
T ss_pred HHHHHH
Confidence 555443
No 86
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=24.64 E-value=1.6e+02 Score=17.50 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHhH
Q 029729 138 VSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISRH 171 (189)
Q Consensus 138 v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~s 171 (189)
+++==.-|.++|-.=|+ .|||+|+.--.+|..+|
T Consensus 15 mq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 15 MQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33333344444444444 66666666666665544
No 87
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=24.42 E-value=1.7e+02 Score=20.01 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=22.0
Q ss_pred ecCeEEEEEE-eCCEEEEEEecCCCCc------------ccHHHHHHHHHHHHHhhhC
Q 029729 50 CDAHTFNYLV-DNGYTYCVVADESSGR------------QIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 50 ~~~~~~h~l~-~~~~~~l~it~~~~~~------------~~af~fL~~i~~~F~~~~~ 94 (189)
.+|..||+-. ..|+-.+.-.....+. .-.+.+|+.|.-.|.+.|+
T Consensus 40 lEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~iSP~fr~~F~ 97 (108)
T PF05303_consen 40 LEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSISPLFRKRFG 97 (108)
T ss_dssp TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH-HHHHHHHH
T ss_pred ecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHHCHHHHHHHH
Confidence 4777777644 3565544443322211 3456777777777766663
No 88
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=24.36 E-value=86 Score=22.31 Aligned_cols=23 Identities=4% Similarity=0.199 Sum_probs=18.9
Q ss_pred CCCCCCCeeEEEecCeEEEEEEe
Q 029729 38 KLPASNNKFTYNCDAHTFNYLVD 60 (189)
Q Consensus 38 ki~~~~~k~s~~~~~~~~h~l~~ 60 (189)
+|.|++++..+..++.+|+|+..
T Consensus 13 kIyPG~G~~fVR~DGkvf~Fcss 35 (131)
T PRK14891 13 EIEPGTGTMFVRKDGTVLHFVDS 35 (131)
T ss_pred cccCCCCcEEEecCCCEEEEecH
Confidence 67888888888888988888764
No 89
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=23.71 E-value=76 Score=20.71 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHHHHHHH-HHHHHHHHHHhHHHHHH
Q 029729 130 KLAKVKAQ-VSEVKGVMMENIEKIGG 154 (189)
Q Consensus 130 kl~~~~~~-v~~v~~im~~Ni~~il~ 154 (189)
.+..+.+. =.||.++|.++|.-+|.
T Consensus 14 ~~~~l~~~~s~ev~e~m~~~v~~llG 39 (86)
T PF05542_consen 14 RIQQLSEPASPEVLEAMKQHVSGLLG 39 (86)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHc
Confidence 34444443 35799999999999887
No 90
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=3.1e+02 Score=22.23 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHhHHHhcccchh
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISRHKTFGVRGPK 180 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~s~~f~~~a~~ 180 (189)
+|.+|.+-+..+|+.. =.+..=|+ ++|+.|.+|++.+...-..=-+++++
T Consensus 219 NL~qis~~lg~LK~mA-~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMA-LDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 3445555555555433 34455555 99999999999998655444444443
No 91
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=23.14 E-value=2.2e+02 Score=24.99 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhHHHHHH------HHHhHHHHHHHHHHHh
Q 029729 137 QVSEVKGVMMENIEKIGG------KRLSYWSIRLRTFISR 170 (189)
Q Consensus 137 ~v~~v~~im~~Ni~~il~------e~l~~L~~kt~~L~~~ 170 (189)
++..++++|.+-+.++-+ ++|+.|.+|-+.|...
T Consensus 424 d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~ 463 (489)
T KOG3684|consen 424 DLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTAS 463 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665 7888888888888754
No 92
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=23.03 E-value=4.5e+02 Score=23.29 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
..+..+...++++-.+..+|-..+=+ .-.+.|.+.++.|......|+-...+++.
T Consensus 468 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk~~~~~~~~ 524 (554)
T PRK15041 468 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQ 524 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 34455555555555555555555544 55667778888888888888766665543
No 93
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.00 E-value=3.5e+02 Score=20.70 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=31.8
Q ss_pred cchhHHHHHHHHHhcCChh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 029729 108 KEFGPKLKELMQYCVDHPE---EISKLAKVKAQVSEVKGVMMENIEKIGGKRLS 158 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~~---~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~ 158 (189)
..|...|.+...++..||. ...+....-+++..-+.+|.++++.++-+.|.
T Consensus 40 ~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~ 93 (200)
T cd07637 40 KLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLH 93 (200)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777766655542 22455666667777777777777766664444
No 94
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.82 E-value=3.6e+02 Score=20.73 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHHhcCCh---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH-HHHHHHHhHHHhcccc
Q 029729 108 KEFGPKLKELMQYCVDHP---EEISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSI-RLRTFISRHKTFGVRG 178 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~---~~~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~-kt~~L~~~s~~f~~~a 178 (189)
..|...|.++..++..|+ ....+.+.+-++|++-+.+|.++++..|-..|...+. --....+.-+.|-+.|
T Consensus 40 ~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s 114 (200)
T cd07638 40 KQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVS 114 (200)
T ss_pred HHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567777777766554443 2345667788888888899999988877744433321 1122334444554444
No 95
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.71 E-value=1.9e+02 Score=17.44 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWS 161 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~ 161 (189)
.++.+|.++|..++.-...-=++.-. +|||.+.
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56666667766666544443344333 6666654
No 96
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.41 E-value=6.3e+02 Score=23.82 Aligned_cols=53 Identities=8% Similarity=-0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhHHH---HHH---HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 133 KVKAQVSEVKGVMMENIEK---IGG---KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 133 ~~~~~v~~v~~im~~Ni~~---il~---e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
.++.+++..-....++|.. .++ +.|+.+....++|+..+.+++..=+.+||..
T Consensus 225 ~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L 283 (806)
T PF05478_consen 225 DIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDL 283 (806)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555 344 6777777777788888888877777777765
No 97
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.34 E-value=2.7e+02 Score=25.07 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 124 HPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 124 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
-|. .+++...++.|++++.-=.+|...+.+ +.++.|....+......+.|++
T Consensus 187 Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 187 LPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred cCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 478888999988888843355556667 8888777776665555555443
No 98
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.30 E-value=2.6e+02 Score=19.00 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHhHH
Q 029729 155 KRLSYWSIRLRTFISRHK 172 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~ 172 (189)
++++.|..+-..|...-.
T Consensus 86 ~~~~~l~~~i~~l~~~~~ 103 (116)
T cd04769 86 DKKQEIRAQITELQQLLA 103 (116)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 99
>PHA02979 hypothetical protein; Provisional
Probab=22.27 E-value=1.5e+02 Score=20.61 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=22.7
Q ss_pred CeeEEEecCeEEEEEEeCCEEEEEEecCCCC
Q 029729 44 NKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (189)
Q Consensus 44 ~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~ 74 (189)
-+.....++|.|-.-....+..+|||.++.+
T Consensus 60 i~LimD~ndYs~e~gN~SnfiiiCI~Sdd~G 90 (140)
T PHA02979 60 IKLIMDANDYSFETGNSSNFIIICICSDDCG 90 (140)
T ss_pred eeeEEecccceEEeCCcccEEEEEEeccccc
Confidence 4555566778876655568889999988875
No 100
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=21.95 E-value=1.6e+02 Score=16.39 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHH--HHHhHHHHHHH
Q 029729 143 GVMMENIEKIGG--KRLSYWSIRLR 165 (189)
Q Consensus 143 ~im~~Ni~~il~--e~l~~L~~kt~ 165 (189)
+.+.+|-..||. +.|+.+.++-+
T Consensus 10 eLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 10 ELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 445666666666 55555555543
No 101
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=21.94 E-value=1.2e+02 Score=22.09 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=23.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHH
Q 029729 64 TYCVVADESSGRQIPMAFLERVKDEF 89 (189)
Q Consensus 64 ~~l~it~~~~~~~~af~fL~~i~~~F 89 (189)
.++.||.++||......||..+.+..
T Consensus 25 ~~ilit~kG~P~~~tr~~l~~L~~~~ 50 (160)
T cd00223 25 NCILITGKGYPDRATRRFLRRLHEEL 50 (160)
T ss_pred CEEEEEcCCcCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999875
No 102
>PRK00807 50S ribosomal protein L24e; Validated
Probab=21.93 E-value=1.3e+02 Score=17.66 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=16.0
Q ss_pred CCCCCCCeeEEEecCeEEEEEE
Q 029729 38 KLPASNNKFTYNCDAHTFNYLV 59 (189)
Q Consensus 38 ki~~~~~k~s~~~~~~~~h~l~ 59 (189)
+|.|++++..+..|+.+|+|+.
T Consensus 10 ~I~pg~G~~~vr~Dgkv~~Fcs 31 (52)
T PRK00807 10 EIEPGTGKMYVKKDGTILYFCS 31 (52)
T ss_pred eEcCCCCeEEEEeCCcEEEEeC
Confidence 4566667777788888887765
No 103
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.69 E-value=1.6e+02 Score=18.59 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 155 KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
+|||.+++|-|. .+|.-|++..+|+-|
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGR 45 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGR 45 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhh
Confidence 444445444443 233444444444443
No 104
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.44 E-value=4.4e+02 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.2
Q ss_pred EecCCCCcccHHHHHHHHHHHHHh
Q 029729 68 VADESSGRQIPMAFLERVKDEFVS 91 (189)
Q Consensus 68 it~~~~~~~~af~fL~~i~~~F~~ 91 (189)
..+..-|+..+-.+|++-..+|-.
T Consensus 41 ~Se~~e~re~ek~~Led~Yk~~~a 64 (982)
T KOG3691|consen 41 GSEDTEPRETEKERLEDSYKEFGA 64 (982)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhH
Confidence 455666889999999998777744
No 105
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=21.31 E-value=3.2e+02 Score=22.72 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 131 LAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 131 l~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+..++..+.++-+-+.+.|.++++
T Consensus 52 ~Edlk~~~k~~~~k~~e~i~kl~~ 75 (339)
T PF12699_consen 52 LEDLKERAKEAGKKIKEFIKKLIA 75 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.28 E-value=5.4e+02 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
..+..++.++++++.-..+=+++++.
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~ 341 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITK 341 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666655555544
No 107
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.09 E-value=3.5e+02 Score=19.98 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH-HHHHHhHHHhcccch
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGGKRLSYWSIRL-RTFISRHKTFGVRGP 179 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~e~l~~L~~kt-~~L~~~s~~f~~~a~ 179 (189)
...+..++.+|++|+.-..+.|+.+ ++|+....++ ..|..-|+.|.+-+.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~ev--D~Le~~er~aR~rL~eVS~~f~~ysE 76 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEV--DKLEKRERQARQRLAEVSRNFDRYSE 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccCH
Confidence 3668889999999998887777655 5555555444 467888888877664
No 108
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=20.39 E-value=1.4e+02 Score=17.83 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.3
Q ss_pred CCCCCCCeeEEEecCeEEEEEE
Q 029729 38 KLPASNNKFTYNCDAHTFNYLV 59 (189)
Q Consensus 38 ki~~~~~k~s~~~~~~~~h~l~ 59 (189)
+|.|+.++..+..|+-.|+|+.
T Consensus 12 ~I~PG~G~~~Vr~Dgkv~~F~s 33 (54)
T cd00472 12 KIYPGHGKMYVRNDGKVFRFCS 33 (54)
T ss_pred eecCCCccEEEecCCCEEEEEC
Confidence 5777778888888888888875
No 109
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.37 E-value=2.5e+02 Score=18.07 Aligned_cols=15 Identities=7% Similarity=0.408 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKG 143 (189)
Q Consensus 129 dkl~~~~~~v~~v~~ 143 (189)
..|.++..++.+..+
T Consensus 35 ~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 35 QQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 110
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.29 E-value=2e+02 Score=16.96 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=6.0
Q ss_pred HHHHHHHHHh
Q 029729 112 PKLKELMQYC 121 (189)
Q Consensus 112 ~~l~~~~~~y 121 (189)
..|++++.-|
T Consensus 18 ~eI~~~l~l~ 27 (65)
T PF09278_consen 18 EEIRELLELY 27 (65)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 4566666555
No 111
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.25 E-value=2.4e+02 Score=17.78 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhccc
Q 029729 134 VKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVR 177 (189)
Q Consensus 134 ~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~ 177 (189)
+...-.+.+..+.+|..++|. +.|..|......|...-......
T Consensus 35 i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 35 IEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677888888899999 88888888888777766555443
No 112
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.22 E-value=4.9e+02 Score=21.36 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG-KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~-e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
..+|..+..++++.+.++..|-.--=- ..++.+..+++++..-.......|......|
T Consensus 137 vq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!