Query 029729
Match_columns 189
No_of_seqs 117 out of 888
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 3.3E-58 1.1E-62 348.7 1.4 184 3-188 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 6E-50 2.1E-54 305.5 11.8 179 5-185 2-192 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 9.5E-41 3.2E-45 254.0 4.4 176 3-183 1-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 1.4E-36 4.6E-41 225.9 14.4 120 3-123 53-172 (173)
5 2vx8_A Nucleoporin-like protei 100.0 3.7E-32 1.3E-36 201.5 12.1 121 3-124 43-163 (169)
6 3bw6_A Synaptobrevin homolog Y 99.9 2E-26 6.8E-31 167.0 13.0 123 4-130 5-144 (144)
7 2nps_A VAMP-4, vesicle-associa 99.8 8.1E-22 2.8E-26 126.6 3.7 66 124-189 3-73 (74)
8 1l4a_A Synaptobrevin; snare, s 99.8 3.2E-21 1.1E-25 125.6 3.1 65 125-189 11-80 (80)
9 1sfc_A VAMP 2, protein (synapt 99.8 2.7E-20 9.1E-25 125.0 7.2 62 128-189 29-95 (96)
10 1n7s_A Vesicle-associated memb 99.8 3.9E-20 1.3E-24 115.2 6.9 58 128-185 3-62 (63)
11 3b5n_A Synaptobrevin homolog 1 99.8 4.2E-20 1.4E-24 114.2 7.0 57 129-185 2-60 (61)
12 3hd7_A Vesicle-associated memb 99.8 1.6E-20 5.4E-25 125.2 4.9 62 128-189 4-70 (91)
13 1gl2_A Endobrevin; membrane pr 99.8 6.6E-20 2.3E-24 114.7 5.8 60 124-183 4-65 (65)
14 2kog_A Vesicle-associated memb 99.7 1.5E-19 5E-24 126.0 -7.3 62 128-189 32-98 (119)
15 1urq_A M-tomosyn isoform; tran 99.7 1E-16 3.6E-21 98.8 6.0 57 129-185 4-62 (63)
16 3zym_A Phosphatidylinositol-bi 97.9 2E-06 6.9E-11 69.2 0.8 52 106-157 243-310 (310)
17 2fh5_A Signal recognition part 97.8 5.3E-05 1.8E-09 56.1 6.8 86 7-94 13-104 (185)
18 3fie_C Fragment of vesicle-ass 97.6 1.8E-08 6.3E-13 55.4 -10.4 27 128-154 8-34 (38)
19 2fz0_A R-snare NYV1P, V-snare 96.0 0.0051 1.7E-07 42.6 3.4 60 28-87 46-114 (149)
20 1w63_Q Adapter-related protein 88.6 5 0.00017 28.4 11.0 48 47-94 49-96 (158)
21 1w63_M Adaptor-related protein 88.5 2.8 9.6E-05 34.6 9.2 90 4-93 1-95 (423)
22 2vgl_M AP-2 complex subunit MU 88.0 7.8 0.00027 32.1 11.7 49 46-94 46-94 (435)
23 2j3t_C Trafficking protein par 87.0 4.1 0.00014 28.5 8.1 86 33-121 46-137 (145)
24 2vgl_S AP-2 complex subunit si 84.4 8.1 0.00028 26.6 11.0 48 47-94 49-96 (142)
25 3tjz_C Coatomer subunit zeta-1 82.8 10 0.00035 26.7 11.7 88 5-93 12-105 (153)
26 1t3j_A Mitofusin 1; coiled coi 80.2 8.2 0.00028 25.0 6.6 44 130-173 37-82 (96)
27 2j3t_D Trafficking protein par 79.1 18 0.00061 27.2 10.6 87 33-122 119-210 (219)
28 3cue_C Transport protein parti 78.1 12 0.0004 26.6 7.6 86 33-121 52-156 (159)
29 3cue_A Transport protein parti 78.0 19 0.00065 27.0 8.9 76 45-121 119-218 (219)
30 2j3w_A Sedlin, trafficking pro 75.5 17 0.00059 25.0 11.6 74 45-121 64-139 (142)
31 1ccd_A Clara cell 17 KD protei 72.8 6.7 0.00023 24.3 4.5 43 112-154 21-63 (77)
32 1utg_A Uteroglobin; steroid bi 70.3 6.6 0.00023 23.8 4.0 42 113-154 20-61 (70)
33 1txp_A HnRNP C, heterogeneous 66.9 5.2 0.00018 19.6 2.3 22 133-158 3-26 (28)
34 1urq_A M-tomosyn isoform; tran 66.3 18 0.00061 21.4 7.0 49 129-177 11-61 (63)
35 3lcn_C MRNA transport factor G 59.7 14 0.00048 18.0 3.2 21 128-148 5-25 (29)
36 1utr_A Uteroglobin; clara cell 56.7 9.5 0.00033 24.7 3.0 42 113-154 41-82 (96)
37 4a4y_A Protein MXIG; protein b 56.1 21 0.00071 23.4 4.5 43 5-59 85-127 (146)
38 2p2u_A HOST-nuclease inhibitor 53.2 59 0.002 23.2 7.3 51 128-178 22-75 (171)
39 1t3j_A Mitofusin 1; coiled coi 52.9 20 0.00068 23.2 4.0 22 133-154 29-50 (96)
40 3hd7_A Vesicle-associated memb 50.5 45 0.0015 21.1 7.0 49 129-177 12-62 (91)
41 1zkr_A Major allergen I polype 50.0 32 0.0011 24.2 5.0 42 113-154 21-63 (153)
42 1sfc_A VAMP 2, protein (synapt 42.7 64 0.0022 20.6 7.0 50 129-178 37-88 (96)
43 2l5g_B Putative uncharacterize 41.7 32 0.0011 18.6 3.0 17 155-171 23-39 (42)
44 3ghg_A Fibrinogen alpha chain; 38.6 39 0.0013 28.8 4.6 15 54-68 32-46 (562)
45 2ygg_A Sodium/hydrogen exchang 36.6 35 0.0012 20.7 3.0 20 135-154 6-25 (70)
46 1n7s_A Vesicle-associated memb 35.1 67 0.0023 18.6 7.0 48 129-176 11-60 (63)
47 1y4m_A HERV-FRD_6P24.1 proviru 33.9 56 0.0019 18.6 3.4 20 129-148 7-26 (53)
48 3hd7_B Syntaxin-1A; membrane p 31.5 1E+02 0.0034 20.1 5.0 55 129-183 21-87 (109)
49 3b5n_A Synaptobrevin homolog 1 31.1 78 0.0027 18.2 7.0 48 129-176 9-58 (61)
50 1pd7_B MAD1; PAH2, SIN3, eukar 30.6 42 0.0014 16.0 2.1 19 147-165 3-23 (26)
51 1r48_A Proline/betaine transpo 30.1 60 0.002 16.5 3.5 23 147-169 4-29 (33)
52 1mof_A Moloney murine leukemia 29.1 74 0.0025 18.2 3.4 21 128-148 8-28 (55)
53 1f5n_A Interferon-induced guan 28.0 77 0.0026 27.4 4.9 42 108-149 434-475 (592)
54 1l4a_A Synaptobrevin; snare, s 26.7 1.1E+02 0.0039 18.6 6.2 48 129-176 22-71 (80)
55 2ch7_A Methyl-accepting chemot 26.4 1.5E+02 0.0052 22.4 6.1 30 155-184 275-304 (309)
56 1l4a_C S-SNAP25 fusion protein 26.2 1.2E+02 0.0042 18.8 7.7 66 114-181 14-81 (83)
57 2nps_A VAMP-4, vesicle-associa 25.8 1.1E+02 0.0038 18.3 6.0 49 129-177 15-65 (74)
58 1gl2_A Endobrevin; membrane pr 25.1 1.1E+02 0.0037 17.8 7.0 47 129-175 16-64 (65)
59 1jth_B Syntaxin 1A; coiled-coi 23.6 1.3E+02 0.0043 18.1 6.7 35 129-163 10-46 (77)
60 2xus_A Breast cancer metastasi 23.6 44 0.0015 18.7 1.7 15 129-143 32-46 (49)
61 1qu7_A Methyl-accepting chemot 23.3 2.3E+02 0.0077 20.9 7.8 48 129-176 175-224 (227)
62 3zx6_A HAMP, methyl-accepting 22.9 2.3E+02 0.0079 22.1 6.6 53 129-181 255-309 (341)
63 3cve_A Homer protein homolog 1 22.8 1.4E+02 0.0046 18.1 6.7 41 129-169 21-67 (72)
64 2w6b_A RHO guanine nucleotide 22.1 1.2E+02 0.0041 17.3 5.7 37 127-164 8-50 (56)
65 3u8p_A Cytochrome B562 integra 21.2 2E+02 0.0067 22.9 5.6 42 136-177 44-86 (347)
66 4e8u_A Putative uncharacterize 20.7 2.2E+02 0.0075 20.3 5.4 48 112-163 120-170 (172)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=3.3e-58 Score=348.73 Aligned_cols=184 Identities=29% Similarity=0.490 Sum_probs=148.0
Q ss_pred cceeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029729 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (189)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL 82 (189)
.|+|+|||||||++|||||+..+|||..+++.+|+++|++++|+++++|+|+|||++++|++|+||||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 48999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHH
Q 029729 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYW 160 (189)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L 160 (189)
++|+++|...|+ ..+.++.|++++.+|.+.|+++|++|+ +|.+.|+|.+++++|+||++||.+||++||+ |+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999996 445567888988999999999999996 4566799999999999999999999999999 999999
Q ss_pred HHHHHHHHHhHHHhcccchhhhhhc---CCC
Q 029729 161 SIRLRTFISRHKTFGVRGPKCGGKC---GCK 188 (189)
Q Consensus 161 ~~kt~~L~~~s~~f~~~a~~l~r~m---n~k 188 (189)
++||++|+.+|+.|+++|++|+|+| |+|
T Consensus 159 ~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp EETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 887
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=6e-50 Score=305.49 Aligned_cols=179 Identities=21% Similarity=0.351 Sum_probs=116.5
Q ss_pred eeEEEEEEeC--CeeeeeeeccC---CC----HHHHHHHHhcCCCC-CCCeeEEEecCeEEEEEEeCCEEEEEEecCCCC
Q 029729 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (189)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~~~---~~----~~~~~~~vL~ki~~-~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~ 74 (189)
||+|+||||+ ++|||++++.+ |+ |.++++.+|+++++ .++|++++.++|.|||+.++|++|+|||+++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 79999998743 44 89999999999997 789999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 75 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 75 ~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+++||.||++|+++|...|+......+.||++ .+|++.|+++|++|+ +|.+.|+|.+++++|+||++||.+||++||+
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~-~~f~~~l~~~~~~y~-~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~ 159 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF-IEFDTFIQKTKKLYI-DSRARRNLGSINTELQDVQRIMVANIEEVLQ 159 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTT-GGGHHHHHHHHTTTS-CCC-----------------CCEEEHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhccchhccccCCCch-HHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997432233578999 599999999999994 6766799999999999999999999999999
Q ss_pred --HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 155 --KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 155 --e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
|+||.|++||++|+.+|+.|+++|++++|+|
T Consensus 160 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~ 192 (196)
T 2nut_C 160 RGEALSALDSKANNLSSLSKKYRQDAKYLNMRS 192 (196)
T ss_dssp ---------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=9.5e-41 Score=253.99 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=150.2
Q ss_pred cceeEEEEEEeCC----eeeeeeeccC----------CCHHH-HHHHHhcCCCCCCCeeEEEecCeEEE-EEEeCCEEEE
Q 029729 3 QKSLIYAFVARGN----VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (189)
Q Consensus 3 ~~~I~Ya~Iar~~----~iLae~~~~~----------~~~~~-~~~~vL~ki~~~~~k~s~~~~~~~~h-~l~~~~~~~l 66 (189)
+|.|++.+|.+.. .+|+...|.+ ++|.. +++.+++++++ ++|.+++.++|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 4789999999842 5777665533 24555 45799999888 58999999999999 8999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHH
Q 029729 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146 (189)
Q Consensus 67 ~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~ 146 (189)
||||++||+++||.||++|+++|...|++..|....+.. ..| +.|+++|++| ++|.+.|+|.+++++|+||++||.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~ 155 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILH 155 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999755553222222 245 6789999999 578878999999999999999999
Q ss_pred HhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 147 ENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 147 ~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
+||+++|+ |+||.|++||++|+++|+.|+++|+++|+
T Consensus 156 ~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 156 NTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp SSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 99999999999999999999999999986
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=225.94 Aligned_cols=120 Identities=32% Similarity=0.554 Sum_probs=114.8
Q ss_pred cceeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029729 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (189)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL 82 (189)
.|+|+|||||||++|||||+..+|||..+++.+|+++++.++|++++.++|+|||++++|++|+||||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 47899999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcC
Q 029729 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD 123 (189)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~ 123 (189)
++|+++|...|+ ..|.+++||+++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999996 5678899999998999999999999974
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.98 E-value=3.7e-32 Score=201.46 Aligned_cols=121 Identities=31% Similarity=0.550 Sum_probs=108.0
Q ss_pred cceeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029729 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (189)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL 82 (189)
.|.|+|+||+||++|||||++.++||..+++.+|+++++.++|.+++.++|+|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 38899999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccccchhHHHHHHHHHhcCC
Q 029729 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124 (189)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~yn~~ 124 (189)
++|+++|...|+ ..|.++.+|+++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999997 45666789999779999999999999654
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.94 E-value=2e-26 Score=167.04 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=98.9
Q ss_pred ceeEEEEEEeC----CeeeeeeeccC----------CCH-HHHHHHHhcCCCCCCCeeEEEecCeEEEEE-EeCCEEEEE
Q 029729 4 KSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCV 67 (189)
Q Consensus 4 ~~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l-~~~~~~~l~ 67 (189)
|.|+|++|+|+ .++|+++++.+ ++| ..+++.+++|++++ +|++++.++|+|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 56778779998 58999998865 455 67899999999984 999999999999999 789999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccccchhHHHHHHHHHhcCChhhhHH
Q 029729 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISK 130 (189)
Q Consensus 68 it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~yn~~~~~~dk 130 (189)
|||++||+++||.||++|+++|...|+...|.+ .++++ ...| +.|.+.|++| +||.+.|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 999999999999999999999999997443554 33221 2344 7899999999 67877664
No 7
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.84 E-value=8.1e-22 Score=126.64 Aligned_cols=66 Identities=30% Similarity=0.388 Sum_probs=58.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 124 HPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 124 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
+|.+.|+|.+++.+|+||++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|+| |+||
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~ 73 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKI 73 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555699999999999999999999999999 9999999999999999999999999999999 9886
No 8
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.82 E-value=3.2e-21 Score=125.63 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 125 PEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 125 ~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
|.+.|+|.+++.+|+||++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|+| |+||
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444599999999999999999999999999 9999999999999999999999999999999 9986
No 9
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.82 E-value=2.7e-20 Score=125.03 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
.|+|.+++.+|+||++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|+| |+||
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~ 95 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 499999999999999999999999999 9999999999999999999999999999999 9996
No 10
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.81 E-value=3.9e-20 Score=115.23 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
.|+|.+++.+|++|++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|+|
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999 9999999999999999999999999999987
No 11
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.81 E-value=4.2e-20 Score=114.25 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
|+|.+++.+|+||++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|+|
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999 9999999999999999999999999999987
No 12
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.81 E-value=1.6e-20 Score=125.18 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
.|++.+++++|+||++||.+||+++|+ |+||.|++||++|+++|..|+++|++++|+| |+||
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~ 70 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 70 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999999999 8774
No 13
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=6.6e-20 Score=114.70 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=50.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhh
Q 029729 124 HPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGG 183 (189)
Q Consensus 124 ~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r 183 (189)
+|.+.|+|.+++.+|+||++||.+||++||+ |+||.|++||++|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555699999999999999999999999999 99999999999999999999999999987
No 14
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.67 E-value=1.5e-19 Score=125.96 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc---CCCC
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC---GCKI 189 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m---n~k~ 189 (189)
.|++.+++.+|+||++||.+||+++|+ |+||.|++||++|+.+|..|+++|++++|+| |+|+
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~ 98 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 98 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999999999 7663
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.67 E-value=1e-16 Score=98.80 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhhhhhc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKCGGKC 185 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~m 185 (189)
.+|..++.++++|++||.+||++|++ |+|+.|++||++|..+|..|++.|++|+++|
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999 9999999999999999999999999999986
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.91 E-value=2e-06 Score=69.18 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=31.9
Q ss_pred cccchhHHHHHHHHHhcC----------Ch----hhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHH
Q 029729 106 LNKEFGPKLKELMQYCVD----------HP----EEISKLAKVKAQVSEVKGVMMENIEKIGG--KRL 157 (189)
Q Consensus 106 l~~~F~~~l~~~~~~yn~----------~~----~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l 157 (189)
+...|.....++.++|.. -| ...|.+.+++++|+||++||.+|||++|+ |+|
T Consensus 243 iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 243 IYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 345566666666666521 01 23489999999999999999999999999 876
No 17
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.80 E-value=5.3e-05 Score=56.10 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=61.5
Q ss_pred EEEEEEeCCeeeeeeeccCC----CHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 029729 7 IYAFVARGNVVLAEYTEFSG----NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (189)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~----~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~--~~~~l~it~~~~~~~~af~ 80 (189)
+.+.+.+|++||+.|+.... ....+++.+|-.=.. +..++.+++|..++..++ +++|++|-..-.+-..+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 67889999999999854332 255566666543221 234688899999887765 7999999887777666779
Q ss_pred HHHHHHHHHHhhhC
Q 029729 81 FLERVKDEFVSKYG 94 (189)
Q Consensus 81 fL~~i~~~F~~~~~ 94 (189)
||+.|+..|...|.
T Consensus 91 LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 91 LIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999995
No 18
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=97.64 E-value=1.8e-08 Score=55.43 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
.|++.+++.+|+||++||.+||+++|+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLe 34 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLE 34 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 489999999999999999999999997
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0051 Score=42.65 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=47.3
Q ss_pred HHH-HHHHHhcCCCC-CC---CeeEEE-ecCeEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 029729 28 FNS-IAYQCLQKLPA-SN---NKFTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (189)
Q Consensus 28 ~~~-~~~~vL~ki~~-~~---~k~s~~-~~~~~~h~l~---~~~~~~l~it~~~~~~~~af~fL~~i~~ 87 (189)
|.. +...||+++.| .+ +|.|.. .+||-.+|.. +++.+|+|++..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 544 55788899887 23 344544 3899988876 3578999999999999999999999986
No 20
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.57 E-value=5 Score=28.39 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=41.4
Q ss_pred EEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029729 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 47 s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
.+..+++.|.|..-+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 457788888888889999999999999999999999998888777664
No 21
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.52 E-value=2.8 Score=34.65 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred ceeEEEEEEe--CCeeeeee-ec-cCCC-HHHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccH
Q 029729 4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (189)
Q Consensus 4 ~~I~Ya~Iar--~~~iLae~-~~-~~~~-~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~a 78 (189)
|||...+|.- |..+|+-+ .. ...+ .+..-+.++.+......--.+..+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 5677777765 33666644 22 1222 333334444332211122345778988888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029729 79 MAFLERVKDEFVSKY 93 (189)
Q Consensus 79 f~fL~~i~~~F~~~~ 93 (189)
+.||..+.+-+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888777655
No 22
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=88.04 E-value=7.8 Score=32.07 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=41.9
Q ss_pred eEEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029729 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 46 ~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
-.+..+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567789988888889999999999999999999999998887777664
No 23
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=87.05 E-value=4.1 Score=28.52 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHhcCCCCC---CCeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHH-HHHHhhhCCCCCCC-CCCCcc
Q 029729 33 YQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGKAAT-APANGL 106 (189)
Q Consensus 33 ~~vL~ki~~~---~~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~-~~F~~~~~~~~~~~-~~~~~l 106 (189)
..+.+++.|. ..-.+++.++|..|+.. -.|+=|+.++|+..+ -.-.||.+|. +.|.+....++.-. ..|..
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 4455555552 34577788999777655 579999999998754 3568999999 67777332233211 12222
Q ss_pred ccchhHHHHHHHHHh
Q 029729 107 NKEFGPKLKELMQYC 121 (189)
Q Consensus 107 ~~~F~~~l~~~~~~y 121 (189)
+..|+..++.+++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 256898888888654
No 24
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=84.35 E-value=8.1 Score=26.65 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=41.3
Q ss_pred EEEecCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029729 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (189)
Q Consensus 47 s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~ 94 (189)
.+..+++.|.|..-+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 457788888888889999999999999999999999998888877563
No 25
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=82.81 E-value=10 Score=26.68 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=60.2
Q ss_pred eeEEEEEEe--CCeeeeeeeccC-CCH---HHHHHHHhcCCCCCCCeeEEEecCeEEEEEEeCCEEEEEEecCCCCcccH
Q 029729 5 SLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (189)
Q Consensus 5 ~I~Ya~Iar--~~~iLae~~~~~-~~~---~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~~~~~~~l~it~~~~~~~~a 78 (189)
||.+.+|.. |.++|+-|-... ... ....+.+.+++.+.+. -.+.++++.+.|..-.++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 566666654 558888764321 121 1122233333333222 356779999989888999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029729 79 MAFLERVKDEFVSKY 93 (189)
Q Consensus 79 f~fL~~i~~~F~~~~ 93 (189)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888777
No 26
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=80.16 E-value=8.2 Score=25.05 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHH
Q 029729 130 KLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKT 173 (189)
Q Consensus 130 kl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~ 173 (189)
-...+..+|++|+.-|.+-|+.+=. .+||.+..++.-|..-|.-
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~ 82 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3568889999999999999988877 8888777777766665543
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=79.14 E-value=18 Score=27.16 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=58.5
Q ss_pred HHHhcCCCCC---CCeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccc
Q 029729 33 YQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLN 107 (189)
Q Consensus 33 ~~vL~ki~~~---~~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~ 107 (189)
..+-.++.|. ..-.+++.+.|..|+.. -.|+-|+.++++. ..-.-.||.+|.+.|.+....++.-. ..|.. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 4445566653 24467788999877654 5799999999986 44567899999988877433233221 12222 2
Q ss_pred cchhHHHHHHHHHhc
Q 029729 108 KEFGPKLKELMQYCV 122 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn 122 (189)
..|+..++.+++.+.
T Consensus 196 ~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 196 ELFDQNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 669999999998774
No 28
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=78.13 E-value=12 Score=26.61 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHhcCCCCC---CCeeEEEecCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHhhhCCCC-----CCCC-
Q 029729 33 YQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKD-EFVSKYGGGK-----AATA- 101 (189)
Q Consensus 33 ~~vL~ki~~~---~~k~s~~~~~~~~h~l~-~~~~~~l~it~~~~~~~~af~fL~~i~~-~F~~~~~~~~-----~~~~- 101 (189)
+.+.+++.|. +.-.+++.+.|..|+.. -.|+-|++++|+..+ -.-.+|.+|.. .|.+-...++ .-..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 5556667663 34556777889877655 479999999997744 45578999997 7776221222 1101
Q ss_pred --------CCCccccchhHHHHHHHHHh
Q 029729 102 --------PANGLNKEFGPKLKELMQYC 121 (189)
Q Consensus 102 --------~~~~l~~~F~~~l~~~~~~y 121 (189)
.+.. +..|+..|+++++.+
T Consensus 130 ~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred cccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1222 155888888887654
No 29
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=78.04 E-value=19 Score=27.02 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=48.0
Q ss_pred eeEEEecCeEEEE-EEeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhhCCCCCC-C
Q 029729 45 KFTYNCDAHTFNY-LVDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGGKAA-T 100 (189)
Q Consensus 45 k~s~~~~~~~~h~-l~~~~~~~l~it~~~~~~----------------------~~af~fL~~i~~~F~~~~~~~~~~-~ 100 (189)
-..+..+.|..|+ ..-.|+=|++++++..+. .-.-.||.+|...|.+....+..- .
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~ 198 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSM 198 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCT
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3456678887665 445799999999987633 446799999998888733222211 1
Q ss_pred CCCCccccchhHHHHHHHHHh
Q 029729 101 APANGLNKEFGPKLKELMQYC 121 (189)
Q Consensus 101 ~~~~~l~~~F~~~l~~~~~~y 121 (189)
..+.. ...|+..++.+++.+
T Consensus 199 ~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 199 EMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TSCCC-CHHHHHHHHHHHHHH
T ss_pred CCccc-cHHHHHHHHHHHHhc
Confidence 11222 155888888777654
No 30
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=75.50 E-value=17 Score=25.05 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=49.4
Q ss_pred eeEEEecCeEEEE-EEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccccchhHHHHHHHHHh
Q 029729 45 KFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYC 121 (189)
Q Consensus 45 k~s~~~~~~~~h~-l~~~~~~~l~it~~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~y 121 (189)
..+...++|..|+ ..-.|+=|+.++++. ...-.-.||.+|.+.|.+... ++.-. ..|.. ...|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 4555667886665 445799999999873 234566899999988887543 33221 12222 256899999988776
No 31
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=72.83 E-value=6.7 Score=24.33 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 112 ~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+.....++.|+.+|...+...++++-++....-=..||.++|+
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~ 63 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTE 63 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456777889888888889999999999888888888888886
No 32
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=70.28 E-value=6.6 Score=23.84 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
.....++.|+.+|...+...++++-++....-=+.||.++|+
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 61 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTE 61 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456677889888888889999999999888888888888876
No 33
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=66.89 E-value=5.2 Score=19.55 Aligned_cols=22 Identities=9% Similarity=0.477 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHh
Q 029729 133 KVKAQVSEVKGVMMENIEKIGG--KRLS 158 (189)
Q Consensus 133 ~~~~~v~~v~~im~~Ni~~il~--e~l~ 158 (189)
.++.++.++| .+||.+|+ |+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3455555544 46677776 5543
No 34
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.31 E-value=18 Score=21.44 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhccc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVR 177 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~ 177 (189)
.++..+...+.+-.+-+.+.-++|=. ++-+.|...++..+.+|..++++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888889999998877 99999999999999999987653
No 35
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=59.72 E-value=14 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029729 128 ISKLAKVKAQVSEVKGVMMEN 148 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~N 148 (189)
.+|+.-++..|+|-++|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999998776
No 36
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=56.69 E-value=9.5 Score=24.65 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029729 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~ 154 (189)
.....++.||.+|...+...++++-+++....=+.||.++|+
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~ 82 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTE 82 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 355667789888887888999999999888888888888876
No 37
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=56.12 E-value=21 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=30.3
Q ss_pred eeEEEEEEeCCeeeeeeeccCCCHHHHHHHHhcCCCCCCCeeEEEecCeEEEEEE
Q 029729 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (189)
Q Consensus 5 ~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~vL~ki~~~~~k~s~~~~~~~~h~l~ 59 (189)
-|+|..|+++. +|.+++..|. ++.-+.+--++++++..||.-.
T Consensus 85 giiyltiskdn--icqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccCc----------EeeccccccceeecceEeehhc
Confidence 48888888875 5788876653 3333335568899999999854
No 38
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=53.17 E-value=59 Score=23.17 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHhHHHhcccc
Q 029729 128 ISKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIRLRTFISRHKTFGVRG 178 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~kt~~L~~~s~~f~~~a 178 (189)
..+|..++.++.++...|.+-|+.|=+ ..+.-|....+.|...=..|...-
T Consensus 22 lr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 22 LAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999998 889999999999988776665443
No 39
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.90 E-value=20 Score=23.22 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 029729 133 KVKAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 133 ~~~~~v~~v~~im~~Ni~~il~ 154 (189)
+++++++.|-.=+-.-+|....
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~ 50 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQK 50 (96)
T ss_dssp ------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444444444
No 40
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.49 E-value=45 Score=21.08 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhccc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVR 177 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~ 177 (189)
+.+..++.-+.+.-+-+.++=+++=+ ++-+.|...|.....+|+..+++
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777877777766 88889999999999999887765
No 41
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=49.95 E-value=32 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHH-HHHHHHHHhHHHHHH
Q 029729 113 KLKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKIGG 154 (189)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~v~-~v~~im~~Ni~~il~ 154 (189)
.....++.|+.+|.......++++-++ ....-=..||.++|+
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLe 63 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLD 63 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 456677889888888889999999999 555555666666665
No 42
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.72 E-value=64 Score=20.62 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRG 178 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a 178 (189)
+.+..++.-+.+..+-+.+.=++|=+ ++=+.|...|.....+|...++..
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888888888777 999999999999999998876653
No 43
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.73 E-value=32 Score=18.58 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHHHHhH
Q 029729 155 KRLSYWSIRLRTFISRH 171 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s 171 (189)
++|..|..|-..|...|
T Consensus 23 ~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 23 QQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44555555555555444
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.61 E-value=39 Score=28.76 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=7.5
Q ss_pred EEEEEEeCCEEEEEE
Q 029729 54 TFNYLVDNGYTYCVV 68 (189)
Q Consensus 54 ~~h~l~~~~~~~l~i 68 (189)
.|-|+.++++-++|=
T Consensus 32 ~WPfCaDeDwGvkCP 46 (562)
T 3ghg_A 32 DWPFCSDEDWNYKCP 46 (562)
T ss_dssp CCCBCCSSSBTTEEE
T ss_pred CCCcccccccCCCCC
Confidence 344445555555553
No 45
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=36.62 E-value=35 Score=20.67 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 029729 135 KAQVSEVKGVMMENIEKIGG 154 (189)
Q Consensus 135 ~~~v~~v~~im~~Ni~~il~ 154 (189)
..+++++++|+..|+.++=+
T Consensus 6 ~~~~e~ir~IL~~NLykiRq 25 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQ 25 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998865
No 46
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=35.12 E-value=67 Score=18.60 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
+.+..++.-+-+..+-+.+.=++|=. ++=+.|...|.....+|...++
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777666 8888888888888888877654
No 47
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=33.86 E-value=56 Score=18.60 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029729 129 SKLAKVKAQVSEVKGVMMEN 148 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~N 148 (189)
+.+..+++++.-+.++..+|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999888
No 48
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=31.49 E-value=1e+02 Score=20.10 Aligned_cols=55 Identities=7% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHH----------HhHHHhcccchhhhh
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFI----------SRHKTFGVRGPKCGG 183 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~----------~~s~~f~~~a~~l~r 183 (189)
+.+.++.+.+.|+.+++.+==..+-+ +-||.+....++-. ..|..+++++++.++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 56788888888888776543333333 44444444333222 234456666666544
No 49
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=31.12 E-value=78 Score=18.19 Aligned_cols=48 Identities=6% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
+.+..++.-+.+.-+-+.+.=++|=. ++=+.|...|.....+|...++
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666667777776655 7777888888888888877654
No 50
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=30.65 E-value=42 Score=16.03 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=13.0
Q ss_pred HhHHHHHH--HHHhHHHHHHH
Q 029729 147 ENIEKIGG--KRLSYWSIRLR 165 (189)
Q Consensus 147 ~Ni~~il~--e~l~~L~~kt~ 165 (189)
.||+.+|+ +=||..+.+++
T Consensus 3 ~nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 3 MNIQMLLEAADYLERREREAE 23 (26)
T ss_dssp CSTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 37888888 77776665543
No 51
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=30.08 E-value=60 Score=16.49 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=12.7
Q ss_pred HhHHHHHH---HHHhHHHHHHHHHHH
Q 029729 147 ENIEKIGG---KRLSYWSIRLRTFIS 169 (189)
Q Consensus 147 ~Ni~~il~---e~l~~L~~kt~~L~~ 169 (189)
+||+.-++ +.+..|..|.+.|..
T Consensus 4 Dnie~~iedi~~ei~~l~~kr~~l~~ 29 (33)
T 1r48_A 4 DNIEQKIDDIDHEIADLQAKRTRLVQ 29 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 45555555 556666555555443
No 52
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=29.13 E-value=74 Score=18.24 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029729 128 ISKLAKVKAQVSEVKGVMMEN 148 (189)
Q Consensus 128 ~dkl~~~~~~v~~v~~im~~N 148 (189)
.+.|..+++++.-+.++..+|
T Consensus 8 ~~si~~l~~ql~sla~vvlQN 28 (55)
T 1mof_A 8 EKSISNLEKSLTSLSEVVLQN 28 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999998888
No 53
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.97 E-value=77 Score=27.37 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhH
Q 029729 108 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI 149 (189)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni 149 (189)
..|...+.++...|+..|...-+-..+-++.-.-+..+.+.|
T Consensus 434 ~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~i 475 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI 475 (592)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence 457777788888886555212333344444444444444444
No 54
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=26.69 E-value=1.1e+02 Score=18.60 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
+.+..++.-+.+..+-+.+.=++|=. ++=+.|...|.....+|...++
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~r 71 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544 6666666666666666655543
No 55
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=26.41 E-value=1.5e+02 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.009 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHhHHHhcccchhhhhh
Q 029729 155 KRLSYWSIRLRTFISRHKTFGVRGPKCGGK 184 (189)
Q Consensus 155 e~l~~L~~kt~~L~~~s~~f~~~a~~l~r~ 184 (189)
...+.+...++++...+..+...+.+|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~ 304 (309)
T 2ch7_A 275 ARLQEISASTEEVTSRVQTIRENVQMLKEI 304 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555543
No 56
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=26.17 E-value=1.2e+02 Score=18.81 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhh
Q 029729 114 LKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKC 181 (189)
Q Consensus 114 l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l 181 (189)
++..+.+. .+ ...+.......-+++.+++....+..+.. |+|+......+.+...-+.=.+..+.|
T Consensus 14 l~~~~~~~-~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 14 IQQQCNQV-TD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444443 22 33577888888999999999999999999 999999999998887766555544443
No 57
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=25.84 E-value=1.1e+02 Score=18.28 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhccc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVR 177 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~ 177 (189)
+.+..++.-+.+.-+-+.+.=++|=. ++=+.|...|.....+|...++.
T Consensus 15 ~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 15 NQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666677666655 88888999999999999887664
No 58
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.07 E-value=1.1e+02 Score=17.84 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFG 175 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~ 175 (189)
..+..++.-+.+.-+-+.+.=++|=. ++=+.|...|.....+|+..+
T Consensus 16 ~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 16 SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666666666655 777777888888777777654
No 59
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=23.60 E-value=1.3e+02 Score=18.10 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHH
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIR 163 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~k 163 (189)
+.+.+|.+.|.|+.+++.+==..|.+ +-||.+...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~n 46 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 46 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56888899999988886654444444 555554443
No 60
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.59 E-value=44 Score=18.72 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVKG 143 (189)
Q Consensus 129 dkl~~~~~~v~~v~~ 143 (189)
++|++++.++++|+.
T Consensus 32 ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 32 ERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 789999999999864
No 61
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=23.34 E-value=2.3e+02 Score=20.90 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcc
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGV 176 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~ 176 (189)
..+..+...++++..+..++-..+=+ ...+.|...++.|......|+-
T Consensus 175 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~L~~~a~~L~~~v~~Fk~ 224 (227)
T 1qu7_A 175 RGIDQVGLAVAEMDRVTQQNAALVEQSAAAAAALEEQASRLTEAVAVFRI 224 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555666666666666555555 6666777777777777777753
No 62
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.87 E-value=2.3e+02 Score=22.15 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHhHHHhcccchhh
Q 029729 129 SKLAKVKAQVSEVKGVMMENIEKIGG--KRLSYWSIRLRTFISRHKTFGVRGPKC 181 (189)
Q Consensus 129 dkl~~~~~~v~~v~~im~~Ni~~il~--e~l~~L~~kt~~L~~~s~~f~~~a~~l 181 (189)
..+..+...++++..+..++-..+=+ ...+.|.+.++.|......|+-....+
T Consensus 255 ~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki~~~~~ 309 (341)
T 3zx6_A 255 RGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQ 309 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 34555556666666666666555555 666677777777777777776555443
No 63
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.84 E-value=1.4e+02 Score=18.14 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHhHHHHHH---HHHhHHHHHHHHHHH
Q 029729 129 SKLAKVKAQVSEVK---GVMMENIEKIGG---KRLSYWSIRLRTFIS 169 (189)
Q Consensus 129 dkl~~~~~~v~~v~---~im~~Ni~~il~---e~l~~L~~kt~~L~~ 169 (189)
+++..++.++++.+ +-....+..+++ .||+.|.+--+.|+.
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78889999999886 556677788887 888888888777764
No 64
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.11 E-value=1.2e+02 Score=17.28 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHhHHHHHH
Q 029729 127 EISKLAKVKAQVSEVKGVMMENIEKIGG------KRLSYWSIRL 164 (189)
Q Consensus 127 ~~dkl~~~~~~v~~v~~im~~Ni~~il~------e~l~~L~~kt 164 (189)
-+|.+..++.+|.+++.- .+-+.+.|+ .+||.++.|.
T Consensus 8 lVDtVYaLkDqV~eL~qe-~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQD-NKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888877763 222444444 6788888776
No 65
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=21.25 E-value=2e+02 Score=22.95 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHHHHH-HHHhHHHHHHHHHHHhHHHhccc
Q 029729 136 AQVSEVKGVMMENIEKIGG-KRLSYWSIRLRTFISRHKTFGVR 177 (189)
Q Consensus 136 ~~v~~v~~im~~Ni~~il~-e~l~~L~~kt~~L~~~s~~f~~~ 177 (189)
.+|++.-+.|..|..++++ ...+.+-+-...|...|.+=++.
T Consensus 44 ad~~~~M~~~a~n~~~~~ka~s~~~~~~~l~~mr~aa~daqk~ 86 (347)
T 3u8p_A 44 ADLEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKA 86 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhhcC
Confidence 4678888999999999999 99999999999999888765543
No 66
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.68 E-value=2.2e+02 Score=20.34 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHH
Q 029729 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKIGG---KRLSYWSIR 163 (189)
Q Consensus 112 ~~l~~~~~~yn~~~~~~dkl~~~~~~v~~v~~im~~Ni~~il~---e~l~~L~~k 163 (189)
.+|.+.++.+ .+- -.|..+.++-..-.+.+.+|+...|+ +.|+.|+.|
T Consensus 120 ~~iG~~Lrk~-gdL---KTv~~i~~E~~rk~~~lv~~L~~~ie~kn~~l~ele~k 170 (172)
T 4e8u_A 120 NIIGENLRKT-GDL---KTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEEL 170 (172)
T ss_dssp SHHHHHHHTT-CEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHc-CCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666654 232 45888899999999999999999999 788877754
Done!