Query 029730
Match_columns 189
No_of_seqs 128 out of 775
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 1.2E-46 2.7E-51 302.9 18.0 173 1-188 40-217 (218)
2 PRK14713 multifunctional hydro 100.0 1.2E-42 2.5E-47 313.2 18.9 171 1-189 357-529 (530)
3 PRK09517 multifunctional thiam 100.0 1.7E-41 3.7E-46 315.9 18.8 169 1-188 583-752 (755)
4 PF03070 TENA_THI-4: TENA/THI- 100.0 5.1E-42 1.1E-46 274.4 12.7 172 1-187 33-209 (210)
5 PTZ00347 phosphomethylpyrimidi 100.0 2.9E-38 6.3E-43 283.2 17.0 166 1-188 50-219 (504)
6 KOG2598 Phosphomethylpyrimidin 99.9 1.1E-22 2.5E-27 174.6 13.3 168 1-187 350-521 (523)
7 PRK05157 pyrroloquinoline quin 97.0 0.045 9.8E-07 45.2 14.2 154 4-187 51-229 (246)
8 TIGR02111 PQQ_syn_pqqC coenzym 96.7 0.12 2.7E-06 42.4 14.4 154 4-186 44-221 (239)
9 COG5424 Pyrroloquinoline quino 96.6 0.22 4.8E-06 40.8 14.9 163 2-186 47-226 (242)
10 PF14518 Haem_oxygenas_2: Iron 89.9 0.95 2.1E-05 31.8 5.3 59 48-106 19-81 (106)
11 CHL00168 pbsA heme oxygenase; 61.1 74 0.0016 26.2 8.4 34 64-102 95-128 (238)
12 PF15565 Imm16: Immunity prote 49.2 31 0.00067 24.8 3.8 39 134-181 13-51 (106)
13 PF12981 DUF3865: Domain of Un 42.2 1.9E+02 0.0041 23.6 10.2 131 41-184 76-225 (231)
14 PF02609 Exonuc_VII_S: Exonucl 40.5 86 0.0019 19.2 5.3 35 132-177 1-35 (53)
15 COG1722 XseB Exonuclease VII s 37.4 1E+02 0.0023 20.9 4.8 36 131-177 11-46 (81)
16 PF05974 DUF892: Domain of unk 35.9 1.3E+02 0.0028 22.8 5.8 68 3-76 10-78 (159)
17 PF01320 Colicin_Pyocin: Colic 35.7 56 0.0012 22.5 3.3 40 124-177 7-46 (85)
18 PRK14067 exodeoxyribonuclease 34.9 1.2E+02 0.0027 20.5 4.9 37 130-177 7-43 (80)
19 PF11455 DUF3018: Protein of 34.2 45 0.00098 21.8 2.5 28 118-145 18-45 (65)
20 TIGR02553 SipD_IpaD_SspD type 32.9 66 0.0014 27.5 3.9 79 101-186 102-207 (308)
21 PRK14068 exodeoxyribonuclease 31.5 1.6E+02 0.0035 19.7 5.0 37 130-177 6-42 (76)
22 PF09539 DUF2385: Protein of u 31.5 94 0.002 21.9 3.9 36 129-175 25-60 (96)
23 PF05210 Sprouty: Sprouty prot 31.2 48 0.001 24.0 2.4 17 89-105 77-93 (108)
24 PRK00977 exodeoxyribonuclease 30.8 1.7E+02 0.0036 19.8 5.0 37 130-177 10-46 (80)
25 PRK14064 exodeoxyribonuclease 30.7 1.7E+02 0.0036 19.6 5.0 37 130-177 6-42 (75)
26 cd00232 HemeO Heme oxygenase c 30.2 2.6E+02 0.0056 21.6 8.9 88 56-146 82-174 (203)
27 TIGR02301 conserved hypothetic 29.6 1.2E+02 0.0026 22.4 4.3 37 128-175 49-85 (121)
28 COG3029 FrdC Fumarate reductas 28.2 1.6E+02 0.0035 21.6 4.7 49 71-131 19-67 (129)
29 PRK14066 exodeoxyribonuclease 28.1 1.9E+02 0.0041 19.3 5.0 36 131-177 5-40 (75)
30 TIGR01834 PHA_synth_III_E poly 27.3 2.4E+02 0.0052 24.3 6.4 53 119-180 233-304 (320)
31 PRK13689 hypothetical protein; 27.0 2E+02 0.0044 19.3 5.3 50 125-176 5-66 (75)
32 TIGR01280 xseB exodeoxyribonuc 26.7 1.9E+02 0.004 18.8 5.0 36 131-177 2-37 (67)
33 PF14118 YfzA: YfzA-like prote 25.9 69 0.0015 22.5 2.4 23 117-139 51-73 (94)
34 PF04117 Mpv17_PMP22: Mpv17 / 24.9 1.3E+02 0.0029 19.1 3.6 30 156-185 5-34 (68)
35 PRK13696 hypothetical protein; 24.1 2.1E+02 0.0045 18.5 4.6 36 117-152 10-52 (62)
36 PRK14069 exodeoxyribonuclease 23.9 2.5E+02 0.0055 19.7 5.0 38 129-177 7-44 (95)
37 PRK14063 exodeoxyribonuclease 23.4 2.4E+02 0.0051 18.8 5.0 37 130-177 5-41 (76)
38 PF06757 Ins_allergen_rp: Inse 22.1 3.3E+02 0.0073 20.9 6.0 50 86-140 104-153 (179)
39 PRK15330 cell invasion protein 21.3 1.3E+02 0.0028 26.1 3.7 50 100-152 129-180 (343)
40 PF13794 MiaE_2: tRNA-(MS[2]IO 20.4 4.4E+02 0.0096 20.9 7.0 107 16-136 25-135 (185)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=1.2e-46 Score=302.89 Aligned_cols=173 Identities=21% Similarity=0.284 Sum_probs=157.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh-HHHHHHHHHHHHHhCCCC---CCCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVEL---SETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~-~~E~~~h~~~~~~~gi~~---~~~~~~p~~~~Y~~ 76 (189)
+|+|||+||.+|+|+++++++|||+.+. +..+...+..+ ..|+.+|+.+++++||+. .+.+|+|+|.+||+
T Consensus 40 YL~QDy~YL~~~~ra~~~~~~ka~~~~~-----~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ 114 (218)
T COG0819 40 YLVQDYLYLVNFARALALLASKAPDLEL-----MEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTR 114 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHH
Confidence 4799999999999999999999999886 66666666554 569999999999999996 35789999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhh
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD-TNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~-~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
||+++ +..|++.++++|++||+|+|.+||+++.... .++++||++||++|+|++|.+.|++++++||+++++.++
T Consensus 115 ym~~~-~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~--- 190 (218)
T COG0819 115 YLLDT-AYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE--- 190 (218)
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH---
Confidence 99998 8999999999999999999999999987532 245899999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|++||+++|++|.+||||||+.
T Consensus 191 ------~~~~~l~~iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 191 ------EELEKLKQIFLTASRFELAFWDMAYRL 217 (218)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999974
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=1.2e-42 Score=313.16 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=155.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhh-hhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~-~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~ 79 (189)
+|+|||+||.+|+|+++++++|+++.++ +..+...+. .+..|+++|+.+++++|++ .+++|+|++|++||+
T Consensus 357 Yl~QD~~yL~~~~r~~a~~~aka~~~e~-----~~~~~~~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aY~~~l~ 428 (530)
T PRK14713 357 YLAQDALYLNGYSRALARLAALAPDPAE-----QVFWAQSAQACLEVESELHRSWLGDRDAD---TAPSPVTLAYTDFLL 428 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCcc---CCCChHHHHHHHHHH
Confidence 4899999999999999999999999887 777766554 4678999999999999873 678999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccc
Q 029730 80 SLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP-DTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGK 158 (189)
Q Consensus 80 ~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~-~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~ 158 (189)
++ +.+|+++++++||+||+|+|.++|+++... ..+++++|++||++|++|+|.++|+++++++|++++.+++
T Consensus 429 ~~-a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~------ 501 (530)
T PRK14713 429 AR-AAGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP------ 501 (530)
T ss_pred HH-HhcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH------
Confidence 98 899999999999999999999999998642 1234689999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhCCC
Q 029730 159 AGDDVLKKAEVELIRVLEHEVEFWNMSRGTA 189 (189)
Q Consensus 159 ~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~~ 189 (189)
+++++|+++|+++|+||++||||||+++
T Consensus 502 ---~~~~~~~~~F~~a~~~E~~Fwd~A~~~~ 529 (530)
T PRK14713 502 ---AERAAMARAFLTACRYELEFFDQARRRA 529 (530)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999986
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.7e-41 Score=315.88 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=154.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhh-hhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM-AGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~-~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~ 79 (189)
+|+|||+||.+|+|++|++++|||+.++ +..+...+ ..+..|+++|+.+++++|+. .+++|+|++|++||+
T Consensus 583 YL~QD~~YL~~yar~~a~~~aka~~~~~-----~~~~~~~~~~~~~~E~~~h~~~~~~~~~~---~~~~p~~~aYt~~l~ 654 (755)
T PRK09517 583 YIDQDAQYLRQYSRALARLSSIAPDSHA-----QVEWAQSAAECIVVEAELHRSYLSGKEAP---SAPSPVTMAYTDFLI 654 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCcC---CCCChHHHHHHHHHH
Confidence 4899999999999999999999999876 66666654 45788999999999999863 678999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhcccc
Q 029730 80 SLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKA 159 (189)
Q Consensus 80 ~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~ 159 (189)
++ +.+|+|+++++||+||+|+|.++|+++.+.. ..++||++||++|++|+|.++|+++++++|++++++++
T Consensus 655 ~~-a~~g~~~~~laAllPC~w~Y~~ig~~l~~~~-~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~------- 725 (755)
T PRK09517 655 AR-TYTEDYVVGVAAVLPCYWLYAEIGLMLAEQN-HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP------- 725 (755)
T ss_pred HH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH-------
Confidence 98 8999999999999999999999999986432 23678999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 160 GDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 160 ~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 726 --~~~~~l~~~F~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 726 --EQRVDAARAFLSASVHEREFFDQATRH 752 (755)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999975
No 4
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=100.00 E-value=5.1e-42 Score=274.45 Aligned_cols=172 Identities=21% Similarity=0.299 Sum_probs=154.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHH-hhhhhhHHHHHHHHHHHHHhCCCCCC---CCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVIL-GGMAGLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~-~~~~~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~~Y~~ 76 (189)
+|+||++||.+|+|+++.+++|+|+++. +..+. .....+.+|+++|+.+++++||+.++ .+|+|+|++|++
T Consensus 33 Yl~QD~~yl~~~~r~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~ 107 (210)
T PF03070_consen 33 YLIQDYHYLKHFARALALLASKAPDPEE-----QRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATRAYTD 107 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhccCcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHH
Confidence 3789999999999999999999999986 53444 44456788999999999999999753 789999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCC-CCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhh
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPD-TNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~-~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
||.++ +.+|+++++++|++||+|+|.++|+++.+.. .+.+++|++||+.|++|+|.+.|+++.+++|+++..+++
T Consensus 108 ~l~~~-a~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~--- 183 (210)
T PF03070_consen 108 FLLSL-AQTGSLAEGLAALLPCEWIYAEIGKRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASD--- 183 (210)
T ss_dssp HHHHH-HHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHH---
T ss_pred HHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCH---
Confidence 99998 8899999999999999999999999886422 246789999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
+++++|+++|+++|++|++|||+||+
T Consensus 184 ------~~~~~~~~~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 184 ------EERERLEEIFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999985
No 5
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=2.9e-38 Score=283.17 Aligned_cols=166 Identities=11% Similarity=0.135 Sum_probs=143.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhh-hhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA-GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~-~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~ 79 (189)
+|+|||+||++|+|+++++++|+|+.++ +..+...+. .+++|..+|+.+++. .+..+++|+|++|++||+
T Consensus 50 Yl~QD~~Yl~~~~r~~a~~~~ka~~~~~-----~~~~~~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~ 120 (504)
T PTZ00347 50 YIAQDTLYLNGYIRILSYCITKSDVTAT-----GGGLLELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLL 120 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHH
Confidence 4799999999999999999999999876 666666554 467788999999743 234678999999999999
Q ss_pred hhcCCCCCH--HHHHHHHHHHHHHHHHHHhhccCCC-CCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhc
Q 029730 80 SLMSPEVDY--TVAITVFWAIEAVYQESFAHCLEPD-TNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 156 (189)
Q Consensus 80 ~~~a~~~~~--~~~laal~pc~w~Y~~~~~~~~~~~-~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~ 156 (189)
++ +..|++ +++++||+||+|+|.++|+++.... .++++||++||++|++|+|.++|+++++++|+++. .
T Consensus 121 ~~-a~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~---- 192 (504)
T PTZ00347 121 AS-GNADTLGPSVVIAAVIPCARLYAWVGQELTNEVELTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---P---- 192 (504)
T ss_pred HH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---h----
Confidence 98 889999 9999999999999999999986421 23468999999999999999999999999999863 3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 157 GKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 157 ~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++++++|+++|+||++||||||++
T Consensus 193 -----~~~~~~~~~F~~~~~~E~~Fw~~Ay~~ 219 (504)
T PTZ00347 193 -----GEFSEVAQAYRRAMELEYDFFDSFGYC 219 (504)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 577889999999999999999999974
No 6
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.89 E-value=1.1e-22 Score=174.56 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=144.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELS---ETVPQKANQVYCRF 77 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~~ 77 (189)
++.|||+||.+|+|+++..++|+|+.++ +.--..-...+.+|+..|.+.+.++|++.. +-+++|++++|.+|
T Consensus 350 ~l~qdy~ylIn~ara~~v~g~ks~~i~~-----ie~~~~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry 424 (523)
T KOG2598|consen 350 YLEQDYLYLINYARAHGVAGSKSPTIED-----IEKEAVIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRY 424 (523)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcHHH-----HHHHhHHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHH
Confidence 3789999999999999999999999875 222222223567899999999999999873 22448999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhc
Q 029730 78 LESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEP-DTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 156 (189)
Q Consensus 78 l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~-~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~ 156 (189)
+..+ ++.|.|.++..|+.| |..+-..+... ..+..++|++|+++|++.++.+.++...+.++...+..++
T Consensus 425 ~~d~-~~~g~~~~l~~a~~p----y~~~l~~lk~~~~as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p---- 495 (523)
T KOG2598|consen 425 INDT-GRRGNWQELVIALNP----YVFALDKLKDEITASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP---- 495 (523)
T ss_pred hhhh-hcccChhhhhhhhch----hhHHHHHHHhhcccCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH----
Confidence 9998 999999999999999 76666666532 2345689999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 157 GKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 157 ~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
++.+.+..||.++|++|..||+.++.
T Consensus 496 -----e~~~~l~~i~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 496 -----EKLQTLVTIFARVTEFETLFWTTALE 521 (523)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999875
No 7
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=97.00 E-value=0.045 Score=45.18 Aligned_cols=154 Identities=8% Similarity=-0.007 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHH--------HHHHHHHHHHHhCCCCC---CC-Ccchhh
Q 029730 4 QDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHD--------EIAWFKKEASKWGVELS---ET-VPQKAN 71 (189)
Q Consensus 4 QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~--------E~~~h~~~~~~~gi~~~---~~-~~~p~~ 71 (189)
|=|.|-..+.+-.|-++|++|+.+. .+.+++-+ +.. =++++..+....|++-+ +. ...|.|
T Consensus 51 nrYyyq~~~P~kdaaI~S~c~D~e~-----Rr~w~~ri--~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~t 123 (246)
T PRK05157 51 NRFYYQINIPLKDAAILSNCPDRET-----RREWRQRI--LDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGV 123 (246)
T ss_pred HhchhhccchHHHHHHHHcCCCHHH-----HHHHHHHH--HHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHH
Confidence 3467777888889999999999875 55444421 112 26899999999999853 33 477999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhC--Chh----HHH-------HHHH
Q 029730 72 QVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG----FGQ-------YCHS 138 (189)
Q Consensus 72 ~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~--~~e----f~~-------~v~~ 138 (189)
+..++-.... +...+|.+++++++. +.-==.|-+ ..-..|-+.|. +++ |.. -|+.
T Consensus 124 r~aVday~~~-~r~~~~~eavas~lt-E~~~P~I~~----------~ri~gl~~~Y~~~~~e~l~yF~~h~~~a~~Dveh 191 (246)
T PRK05157 124 RFAVDAYVNF-ARRAPWLEAVASSLT-ELFAPQIHQ----------ERLAGWPEHYPWIDPEGLAYFRSRLTQAPRDVEH 191 (246)
T ss_pred HHHHHHHHHH-HccCCHHHHHHHHHH-HHhhhHHHH----------HHHHHHHHHCCCCCHHHHHHHHHHhhccchhHHH
Confidence 9999888887 688899999998876 442111111 11222333322 222 111 1112
Q ss_pred HHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 139 LKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 139 l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
..+++-+.+ .++ ++++++.++-...|..=|.|+|.-|.
T Consensus 192 al~~~l~~~--~t~---------e~q~~al~al~~k~d~Lw~~LDai~~ 229 (246)
T PRK05157 192 GLAYVLDHA--TTR---------EQQERALEALQFKLDVLWSMLDALYM 229 (246)
T ss_pred HHHHHHHHc--CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 233 78889999999999999999997653
No 8
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=96.69 E-value=0.12 Score=42.39 Aligned_cols=154 Identities=10% Similarity=0.051 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh------HHHHHHHHHHHHHhCCCCC---CC-CcchhhHH
Q 029730 4 QDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL------HDEIAWFKKEASKWGVELS---ET-VPQKANQV 73 (189)
Q Consensus 4 QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~------~~E~~~h~~~~~~~gi~~~---~~-~~~p~~~~ 73 (189)
|=|.|-..+.+-.|-+.+++|+++. ++.+++-+..- ..=+++...+....|++.+ +. ...|.|+.
T Consensus 44 nrYyyq~~iP~kdAAi~s~c~D~e~-----Rr~wl~ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trf 118 (239)
T TIGR02111 44 NRYYYQANIPLKDAAILARCPDPQL-----RRIWRQRILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRF 118 (239)
T ss_pred HhhhhhhcccHHHHHHHHcCCCHHH-----HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHH
Confidence 4477777888889999999999875 55555422110 0126889999999999853 23 34799987
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhh--CChh----HHHHHHHH-HHH----
Q 029730 74 YCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW--GNDG----FGQYCHSL-KKI---- 142 (189)
Q Consensus 74 Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y--~~~e----f~~~v~~l-~~~---- 142 (189)
.++=.... +...+|.++++|++. +.-==+|-+. .-..|.+.| .+++ |..-..+- ++.
T Consensus 119 aVday~~f-~r~~~~~eavasslT-E~f~P~I~~~----------ri~gl~~~Y~~~~~e~l~yF~~r~~qa~rd~e~~l 186 (239)
T TIGR02111 119 AVDAYVHF-VREKSLLEAIASSLT-ELFAPQIHSE----------RVAGMLQHYDFIDDAALAYFRKRLTQAPRDVEFGL 186 (239)
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHH-HHHhHHHHHH----------HHHhHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 77766666 677899999999765 4321112111 111222222 2222 22211111 111
Q ss_pred ---HHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029730 143 ---ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 186 (189)
Q Consensus 143 ---ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~ 186 (189)
++.+ .++ ++.+++.++-...|..=|.|.|.-|
T Consensus 187 ~~~l~~~---~t~---------e~Q~~~l~al~fk~dvLw~~LDal~ 221 (239)
T TIGR02111 187 DYVLDHA---TTR---------EKQEAALEALTFKCDVLWAQLDALY 221 (239)
T ss_pred HHHHHHc---CCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 133 6788899999999999999988655
No 9
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=96.57 E-value=0.22 Score=40.76 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=102.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhh----hhhH--HHHHHHHHHHHHhCCCCC---CCCcchhhH
Q 029730 2 QGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM----AGLH--DEIAWFKKEASKWGVELS---ETVPQKANQ 72 (189)
Q Consensus 2 l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~----~~~~--~E~~~h~~~~~~~gi~~~---~~~~~p~~~ 72 (189)
++.=|+|+++|.+.++.+++|+++.+. .+..+.-+ ++.. +=+++-..+...+|++.+ +..|.|.++
T Consensus 47 vi~~~~~~k~~p~~lSail~rcdd~~~-----r~~~leni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~~ 121 (242)
T COG5424 47 VINRYYYQKNFPLYLSAILARCDDDDV-----RREWLENIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPSTR 121 (242)
T ss_pred HHhhhHHHHhhhHHHHHHHhcCCcHhH-----HHHHHHHHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHHH
Confidence 345578999999999999999999875 33333321 1111 237778888889999973 356999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChh-----HH---HHHHHHHHHHH
Q 029730 73 VYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDG-----FG---QYCHSLKKIAN 144 (189)
Q Consensus 73 ~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~e-----f~---~~v~~l~~~ld 144 (189)
.=+..-... +...++.+++++++.-+..=-. ...+. ...-+.|..|++ ..+-. +. .=+.+..+++.
T Consensus 122 ~av~~~~~~-a~~~s~~~~~aslyt~El~apr---i~~~k-i~gl~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv~ 195 (242)
T COG5424 122 FAVDTWVRF-ATEKSWLEGAASLYTYELVAPR---ISVEK-ISGLPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIVL 195 (242)
T ss_pred HHHHHHHHH-hcchhHHHHHHHHHHHHhhccH---HHHHH-ccCchhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999888887 7888999999999876655222 22111 011122223332 11111 11 22334444555
Q ss_pred HHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029730 145 RLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR 186 (189)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~ 186 (189)
+++.. - |..+++.++-.++...=|.|=|..+
T Consensus 196 ~~~~t--~---------E~~~~~~~~~~~~~D~lw~fLda~~ 226 (242)
T COG5424 196 ELAGT--R---------ELQDQVLDALQKSLDVLWLFLDARM 226 (242)
T ss_pred HHHhc--h---------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 2 5667788888888888787776554
No 10
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=89.93 E-value=0.95 Score=31.84 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCC----CCCcchhhHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 029730 48 IAWFKKEASKWGVELS----ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESF 106 (189)
Q Consensus 48 ~~~h~~~~~~~gi~~~----~~~~~p~~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~ 106 (189)
..+|+++++.+|++.+ .....|.+.++.+.+...+....++..++.++..-+..-..+.
T Consensus 19 ~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 19 PELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIY 81 (106)
T ss_dssp HHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHH
Confidence 5788999999999974 1245688999999888763445677889999887777644443
No 11
>CHL00168 pbsA heme oxygenase; Provisional
Probab=61.06 E-value=74 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCCcchhhHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 029730 64 ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVY 102 (189)
Q Consensus 64 ~~~~~p~~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y 102 (189)
..+|+|+++.|++.+.++ +.+ .+.+++|- |+-.|
T Consensus 95 ~~~p~pa~~~Yv~rI~~~-~~~--~P~~LvAH--~YvrY 128 (238)
T CHL00168 95 IIEPSPATKIYVDRIHKI-SAK--KPELLIAH--AYTRY 128 (238)
T ss_pred cCCCChHHHHHHHHHHHH-hhc--ChHHHHHH--HHHHH
Confidence 467899999999999997 543 34433331 56666
No 12
>PF15565 Imm16: Immunity protein 16
Probab=49.23 E-value=31 Score=24.82 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 029730 134 QYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 181 (189)
Q Consensus 134 ~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~F 181 (189)
+-++...+.+++++...+. +.+..+..+|-..+..|.+|
T Consensus 13 ~e~e~Fe~~L~~l~~~~d~---------~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 13 EECEEFEEALNELAKYPDN---------DVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHHhcCCH---------hHHHHHHHHhcCccchHHHH
Confidence 3467888888888888887 78888888888888887776
No 13
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=42.23 E-value=1.9e+02 Score=23.63 Aligned_cols=131 Identities=11% Similarity=0.201 Sum_probs=69.2
Q ss_pred hhhhHHHHH----------HHHHHHHH-hCCCCCCCCcchhhHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-------H
Q 029730 41 MAGLHDEIA----------WFKKEASK-WGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAV-------Y 102 (189)
Q Consensus 41 ~~~~~~E~~----------~h~~~~~~-~gi~~~~~~~~p~~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~-------Y 102 (189)
+.++.+|+. +++.-+.. +|.+..+..|+++|+....=++.+ ... +-...+-++++.+-. -
T Consensus 76 ~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L-~t~-~~s~vlGa~YAtE~~AIpEl~ll 153 (231)
T PF12981_consen 76 QRNINEEMGEGCGKISHYVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLAL-FTW-DSSEVLGACYATEAAAIPELQLL 153 (231)
T ss_dssp HHHHHHHTTTTTTT--HHHHHHHHHHHHHS---TT----HHHHHHHHHHHHH-CTS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCCCCCCcchHHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHH-hCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777776 56665555 898888889999999999888887 322 224445555444322 2
Q ss_pred HHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHh
Q 029730 103 QESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEF 181 (189)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~F 181 (189)
.+|-.++..++. +-+...-+|-+.|-++-=++-.+.++..++..-.. . +++...++=|+.+...=..|
T Consensus 154 ~ei~~~la~rk~~~~~~s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~--e---------~q~~~f~~Gf~~mI~~m~~w 222 (231)
T PF12981_consen 154 YEIVNELAQRKGLHNSWSQLDFYDWHLDGTEQEHKDGLRQFLASYIDT--E---------EQMPLFKDGFLAMIDIMEDW 222 (231)
T ss_dssp HHHHTTT---HHHHH------HHHHHCS----HHHHHHHHHHHTT--G--G---------G-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCcchhhhHHHHHhcchHHHHHHHHHHHHHHHHcCc--c---------hhHHHHHHHHHHHHHHHHHH
Confidence 233333322100 00111125667777766677777888888754211 1 46778888999999988889
Q ss_pred hhh
Q 029730 182 WNM 184 (189)
Q Consensus 182 Wd~ 184 (189)
|+.
T Consensus 223 W~~ 225 (231)
T PF12981_consen 223 WKE 225 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 14
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=40.52 E-value=86 Score=19.17 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 132 FGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 132 f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
|.+...++..+++++-..- -.++...+.|.+++.+
T Consensus 1 fEe~~~~Le~Iv~~Le~~~-----------~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGE-----------LSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT------------S-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 6788889999999884322 2466666677766654
No 15
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=37.39 E-value=1e+02 Score=20.92 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+....+..+|.++-.. . -.++....+|.+...|
T Consensus 11 sfE~~l~eLE~IV~~LE~G--e---------l~Le~sl~~~erG~~L 46 (81)
T COG1722 11 SFEEALAELEEIVESLESG--E---------LPLEEALKEFERGMAL 46 (81)
T ss_pred hHHHHHHHHHHHHHHHHcC--c---------ccHHHHHHHHHHHHHH
Confidence 7999999999999988322 2 3566677777777655
No 16
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=35.92 E-value=1.3e+02 Score=22.83 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=44.7
Q ss_pred hhhHHHH-HHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHH
Q 029730 3 GQDYIFV-REFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCR 76 (189)
Q Consensus 3 ~QD~~YL-~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~ 76 (189)
.||.++. +...+++...+.++.+|+- ...|...+....+-+..-+.+++.+|.++.. .+.++...-+.
T Consensus 10 L~d~y~aE~q~~~~l~~~~~~a~~~~L-----~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~-~~c~~~~gl~~ 78 (159)
T PF05974_consen 10 LRDLYSAEKQLLKALPKLAEAASSPEL-----KAALEEHLEETEQQIERLEQIFEALGADPSA-EKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C-HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-CcchHHHHHHH
Confidence 3677777 4788899999999999764 5555555555666677888899999988742 33345444443
No 17
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=35.69 E-value=56 Score=22.53 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=23.4
Q ss_pred hhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 124 I~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
|..|+-.||-++|+.+...- ..++ +....+...|.+.+.+
T Consensus 7 i~dyTE~EFl~~v~~i~~~~-----~~~e---------e~~d~lv~hF~~iteH 46 (85)
T PF01320_consen 7 ISDYTESEFLEFVKEIFNAE-----LKTE---------EEHDELVDHFEKITEH 46 (85)
T ss_dssp GGGSBHHHHHHHHHHHHHTC-----SSSC---------HHHHHHHHHHHHHH--
T ss_pred HHHhhHHHHHHHHHHHHcCC-----CCCH---------HHHHHHHHHHHHcCCC
Confidence 45677777766666554321 1223 5777788888887764
No 18
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.90 E-value=1.2e+02 Score=20.48 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..- -.++...+.|.+++.|
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~-----------l~Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGD-----------LPLEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 579999999999999884322 2355556666666554
No 19
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=34.18 E-value=45 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.8
Q ss_pred chHHHHhhhhCChhHHHHHHHHHHHHHH
Q 029730 118 PELQEVCQRWGNDGFGQYCHSLKKIANR 145 (189)
Q Consensus 118 ~~y~~WI~~y~~~ef~~~v~~l~~~ld~ 145 (189)
-|-+-||+...+|+|.+-+..-..+|.+
T Consensus 18 RPVqiWVPDtr~p~F~~E~rRQs~lva~ 45 (65)
T PF11455_consen 18 RPVQIWVPDTRRPEFAAECRRQSRLVAQ 45 (65)
T ss_pred CcceeeCCCCCChHHHHHHHHHHHHHhc
Confidence 4677899999999999999999988875
No 20
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=32.94 E-value=66 Score=27.50 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=42.3
Q ss_pred HHHHHHhhccCCCCCCCchHHHHhhhhCC--hhHHHHHHHHHHHHHHHHhhcchhhhccccc----------hHHHHHHH
Q 029730 101 VYQESFAHCLEPDTNTPPELQEVCQRWGN--DGFGQYCHSLKKIANRLLEKASDDLIMGKAG----------DDVLKKAE 168 (189)
Q Consensus 101 ~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~--~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~----------~~~~~~~~ 168 (189)
.|.++|..+... -.+.-.+.++.|++ ..|.++++.+-+++-++..-.++ |.|| ...+.++.
T Consensus 102 S~aelw~~Is~~---I~~Ik~dYldvYa~lvk~YTd~yQ~fn~~lSkls~~Isa----G~DGn~VkFd~~~lk~~l~~~~ 174 (308)
T TIGR02553 102 QDDPIWDMLSDV---IGKIGDSYLGVYENVVEGYTDFYQAFSDILSKMQDWISP----GKDGNNVKLDVGKLKALLQQLI 174 (308)
T ss_pred cHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCCCCeeeeCHHHHHHHHHHHH
Confidence 577777766421 12333344455543 45566666666666666555555 4444 22444445
Q ss_pred HHHHH---------------HHHHHHHhhhhhh
Q 029730 169 VELIR---------------VLEHEVEFWNMSR 186 (189)
Q Consensus 169 ~~F~~---------------~~~lE~~FWd~a~ 186 (189)
+-|.. ...-|..||..-+
T Consensus 175 ~Ky~~~~~~~pa~~~~~i~~~s~~Ea~~W~keL 207 (308)
T TIGR02553 175 DHLPNQINSFPAQSDGGMQLPKEADARRWRKEL 207 (308)
T ss_pred HHhccCccCCccccccccccCcHHHHHHHHHHh
Confidence 44541 2346788997644
No 21
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.50 E-value=1.6e+02 Score=19.69 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..- -.++...+.|.++..|
T Consensus 6 ~sfEeal~~Le~IV~~LE~gd-----------l~Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDNET-----------VSLEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 479999999999999884332 2466666677766654
No 22
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=31.50 E-value=94 Score=21.94 Aligned_cols=36 Identities=6% Similarity=0.050 Sum_probs=25.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHH
Q 029730 129 NDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 175 (189)
Q Consensus 129 ~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 175 (189)
+++=+.|=+.+.++||. +..++ ..+.+|...|.+.-
T Consensus 25 ~~~~~~WR~~M~~Ll~~--E~p~~---------~rR~rl~~aFN~GY 60 (96)
T PF09539_consen 25 GNEDQYWRDRMQALLDA--EAPDE---------ARRARLIAAFNRGY 60 (96)
T ss_pred CCCcchHHHHHHHHHHh--cCCCH---------HHHHHHHHHHHHHH
Confidence 34444566688888884 34445 78999999998864
No 23
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=31.22 E-value=48 Score=23.95 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029730 89 TVAITVFWAIEAVYQES 105 (189)
Q Consensus 89 ~~~laal~pc~w~Y~~~ 105 (189)
..+|+.++||.|.|.=+
T Consensus 77 L~~LSl~~PCL~CY~Pl 93 (108)
T PF05210_consen 77 LALLSLFLPCLCCYPPL 93 (108)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 45678889999999853
No 24
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.79 E-value=1.7e+02 Score=19.78 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..- -.++...+.|.+++.|
T Consensus 10 ~sfEea~~~LEeIv~~LE~~~-----------l~Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLESGD-----------LPLEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 569999999999999884322 2456666677666654
No 25
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.66 E-value=1.7e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..- -.++...+.|.+++.|
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~-----------l~Leesl~~ye~G~~L 42 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGS-----------ASLEDSLDMYQKGIEL 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 469999999999999884332 2355666666666554
No 26
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=30.15 E-value=2.6e+02 Score=21.59 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHhCCCCC--CCCcchhhHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCchHHHHhhhhCCh
Q 029730 56 SKWGVELS--ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLE---PDTNTPPELQEVCQRWGND 130 (189)
Q Consensus 56 ~~~gi~~~--~~~~~p~~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~---~~~~~~~~y~~WI~~y~~~ 130 (189)
+.+|.+.. ..+|.|++ .|.+++... . ..+...++.+++.-+-+=..-|+.+.. .....+..=-.|...|+.+
T Consensus 82 ~~lg~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~lg~~YV~egs~l~GG~~i~~~l~~~~~~~~~~~~f~~~~g~~ 158 (203)
T cd00232 82 AYLGGSDWRVREPPLPAA-AYAARLREI-A-EENPALLLGHAYVRYGADLSGGQVLAKIAQRALLLEGKGLAFYAFHGIA 158 (203)
T ss_pred HHHhCCCccccCCCChHH-HHHHHHHHH-H-hcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCccCccccCCCcC
Confidence 34566542 23455677 999988775 3 456777777777666432211222211 0001111122455566534
Q ss_pred hHHHHHHHHHHHHHHH
Q 029730 131 GFGQYCHSLKKIANRL 146 (189)
Q Consensus 131 ef~~~v~~l~~~ld~~ 146 (189)
+=...-+.....+|++
T Consensus 159 ~~~~~w~~f~~~l~~~ 174 (203)
T cd00232 159 DRGLFKREFREALDAL 174 (203)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4455566667777764
No 27
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=29.56 E-value=1.2e+02 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHH
Q 029730 128 GNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 175 (189)
Q Consensus 128 ~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 175 (189)
.+++=+.|=+.+.++||. +..++ ..+.+|...|.+.-
T Consensus 49 ~~~~~~~WR~~M~~Ll~a--E~p~~---------~rR~rl~~aFNrGY 85 (121)
T TIGR02301 49 GSKGDDYWRSRMQALIDA--ETADE---------ERRARMTAAFNRGY 85 (121)
T ss_pred CCCcchHHHHHHHHHHHh--hCCCh---------hHHHHHHHHHHHHH
Confidence 334445566788888884 34444 78999999998864
No 28
>COG3029 FrdC Fumarate reductase subunit C [Energy production and conversion]
Probab=28.17 E-value=1.6e+02 Score=21.65 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChh
Q 029730 71 NQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDG 131 (189)
Q Consensus 71 ~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~e 131 (189)
-.-|.-||++- + .++-++|-|..+ -.|-.... +.++.++.|++.-.+|-
T Consensus 19 l~fYr~yMlRE-~------T~ip~vwF~l~L--i~gl~al~---~gp~~~~~fldFl~NPv 67 (129)
T COG3029 19 LPFYRFYMLRE-A------TAIPAVWFSLEL--IYGLFALG---SGPEAWQGFLDFLANPV 67 (129)
T ss_pred CcHHHHHHHHH-h------hhHHHHHHHHHH--HHHHHHHc---cCchHHHHHHHHhcCCe
Confidence 34688899885 3 345566666333 22323322 22578999999999884
No 29
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.07 E-value=1.9e+02 Score=19.32 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+...+|..+|.++-..- -.++...+.|.+++.|
T Consensus 5 ~fEeal~~LE~IV~~LE~g~-----------l~Leesl~lyeeG~~L 40 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGE-----------LSLDDSLKAFEEGVKH 40 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 59999999999999884322 2355666666666554
No 30
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.32 E-value=2.4e+02 Score=24.35 Aligned_cols=53 Identities=9% Similarity=-0.023 Sum_probs=34.0
Q ss_pred hHHHHhhhh--------CChhHHHHHHHHHH-----------HHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 029730 119 ELQEVCQRW--------GNDGFGQYCHSLKK-----------IANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179 (189)
Q Consensus 119 ~y~~WI~~y--------~~~ef~~~v~~l~~-----------~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~ 179 (189)
.|..||+.. +|++|.+...++.+ ++++....++- ..+..|.++..+..+||.
T Consensus 233 ~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~e~~L~~Lnl---------PTRsElDe~~krL~ELrR 303 (320)
T TIGR01834 233 LYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIVEALLKMLNL---------PTRSELDEAHQRIQQLRR 303 (320)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHH
Confidence 477777654 67888776655443 44444444443 566777778888877776
Q ss_pred H
Q 029730 180 E 180 (189)
Q Consensus 180 ~ 180 (189)
+
T Consensus 304 ~ 304 (320)
T TIGR01834 304 E 304 (320)
T ss_pred H
Confidence 4
No 31
>PRK13689 hypothetical protein; Provisional
Probab=26.98 E-value=2e+02 Score=19.31 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=34.5
Q ss_pred hhhCChhHHHHHHHHHHHHHHHHhhcchh------------hhccccchHHHHHHHHHHHHHHH
Q 029730 125 QRWGNDGFGQYCHSLKKIANRLLEKASDD------------LIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 125 ~~y~~~ef~~~v~~l~~~ld~~~~~~~~~------------~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
.-|+++.+.+...++...+++. +++.| ...+.-.+++|+.+.+.|.+++.
T Consensus 5 SKYsd~qvE~il~el~~VLeKH--~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKH--KAPTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFARALQ 66 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 3588999999999999999874 33322 11112245788889999988764
No 32
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=26.74 E-value=1.9e+02 Score=18.81 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 131 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 131 ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
.|.+...++..+|.++-..- -.++...+.|.+++.|
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~-----------l~Leesl~lyeeG~~L 37 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGD-----------LALEEALNLFERGMAL 37 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 38888999999999874322 2355666666666654
No 33
>PF14118 YfzA: YfzA-like protein
Probab=25.90 E-value=69 Score=22.51 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=18.5
Q ss_pred CchHHHHhhhhCChhHHHHHHHH
Q 029730 117 PPELQEVCQRWGNDGFGQYCHSL 139 (189)
Q Consensus 117 ~~~y~~WI~~y~~~ef~~~v~~l 139 (189)
.+++.+|+..|.+|.|.=..--.
T Consensus 51 l~~FteW~t~Y~~p~fN~~Tv~~ 73 (94)
T PF14118_consen 51 LKFFTEWFTPYKSPQFNLFTVFF 73 (94)
T ss_pred CHHHHhhcccccCchhhhHHHHH
Confidence 36899999999999997665543
No 34
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=24.91 E-value=1.3e+02 Score=19.08 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=24.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhh
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMS 185 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a 185 (189)
||++.++-++++++-|..+..--+.||.-+
T Consensus 5 ~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~ 34 (68)
T PF04117_consen 5 EGKSWEEIKEKLKRDYWPTLKASWKFWPPA 34 (68)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 344555788999999999999999999754
No 35
>PRK13696 hypothetical protein; Provisional
Probab=24.13 E-value=2.1e+02 Score=18.52 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=25.7
Q ss_pred CchHHHHhhhhCChhHHHHHHHHH-------HHHHHHHhhcch
Q 029730 117 PPELQEVCQRWGNDGFGQYCHSLK-------KIANRLLEKASD 152 (189)
Q Consensus 117 ~~~y~~WI~~y~~~ef~~~v~~l~-------~~ld~~~~~~~~ 152 (189)
+.-|..-...-.+..|.+++..|. +.|-.++--.++
T Consensus 10 dd~Y~~L~~kk~~~SFSevi~~L~~~~~~~~~~l~~~~Gil~d 52 (62)
T PRK13696 10 DDVYEKLLEIKGDKSFSEVIRELIEKKKGNLDKLMKAFGILSE 52 (62)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhhccHHHHHHHHCCCCH
Confidence 456777777788999999999998 444555544444
No 36
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.88 E-value=2.5e+02 Score=19.73 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 129 NDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 129 ~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
...|.+...+|..+|.++-..- -.++.....|.+++.|
T Consensus 7 ~~sFEeal~~LEeIV~~LEsgd-----------l~LEesl~lyeeGv~L 44 (95)
T PRK14069 7 KISFEDALRELEQIAEKLERQD-----------FSLEESLKAYERGMEL 44 (95)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 4569999999999999884322 2355666666666554
No 37
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.35 E-value=2.4e+02 Score=18.85 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 130 DGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 130 ~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
..|.+...+|..+|+++-..- -.++.....|.+++.|
T Consensus 5 ~sfEeal~~LE~Iv~~LE~~~-----------l~Leesl~lyeeG~~L 41 (76)
T PRK14063 5 LSFEEAISQLEHLVSKLEQGD-----------VPLEEAISYFKEGMEL 41 (76)
T ss_pred cCHHHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHH
Confidence 468999999999999884322 2355556666666554
No 38
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=22.09 E-value=3.3e+02 Score=20.90 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHH
Q 029730 86 VDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLK 140 (189)
Q Consensus 86 ~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~ 140 (189)
.++..=+.+++|-.-+..-.-.++. +++.|+++++.-.|++|++.++.+.
T Consensus 104 ~g~~~di~~~lP~~~l~aL~~~K~~-----~s~~F~~f~~~l~S~ef~~~~~~~~ 153 (179)
T PF06757_consen 104 NGFVDDILALLPRDKLRALYEEKLA-----TSPEFAEFVEALRSPEFQQLYNALW 153 (179)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH-----CCHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3455556777776655443333333 3678999999999999999888654
No 39
>PRK15330 cell invasion protein SipD; Provisional
Probab=21.35 E-value=1.3e+02 Score=26.09 Aligned_cols=50 Identities=6% Similarity=0.007 Sum_probs=30.5
Q ss_pred HHHHHHHhhccCCCCCCCchHHHHhhhhCC--hhHHHHHHHHHHHHHHHHhhcch
Q 029730 100 AVYQESFAHCLEPDTNTPPELQEVCQRWGN--DGFGQYCHSLKKIANRLLEKASD 152 (189)
Q Consensus 100 w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~--~ef~~~v~~l~~~ld~~~~~~~~ 152 (189)
..|.|+|..+... -.++-.+.++.|++ ..|.++++.+-+++-++..-.++
T Consensus 129 iS~aELW~~Is~s---IssIk~dYldvYa~vVk~YTd~yQsfne~lSkls~~Isa 180 (343)
T PRK15330 129 ISDAEIWDMVSQN---ISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLP 180 (343)
T ss_pred ccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4799999887531 12344455555653 45666777777777766655555
No 40
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=20.37 E-value=4.4e+02 Score=20.86 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=55.2
Q ss_pred HHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHH---HHHhCCCCCCCCcchhhHHHHHHHHhhcCCCCCHHHHH
Q 029730 16 AASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKE---ASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAI 92 (189)
Q Consensus 16 ~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~---~~~~gi~~~~~~~~p~~~~Y~~~l~~~~a~~~~~~~~l 92 (189)
++.-+..||+..+ +..+.. + ...|+.-|+.. +.+.|+++. ....|-...+.+|=.++ .-.+|.|.+
T Consensus 25 La~da~~AP~l~~-----r~ala~-m--Aaae~~hf~~L~~~l~~~G~d~~-~am~pf~~~ld~f~~rT--~P~dW~E~L 93 (185)
T PF13794_consen 25 LAEDARMAPTLAD-----RIALAR-M--AAAEFGHFERLEARLAERGVDPE-EAMEPFVGALDAFHART--RPSDWLESL 93 (185)
T ss_dssp HHHHHCC-SSSTT-----HHHHHH-H--HHHHHHHHHHHHHHHHHTT--HH-HHHGGGHHHHHHHHHTT----SSHHHHH
T ss_pred HHHHHhhCcCHHH-----HHHHHH-H--HHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhcC--CCCChHHHH
Confidence 4566788999886 333332 1 23467666664 446788863 23457888888888776 456899987
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhh-CChhHHHHH
Q 029730 93 TVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRW-GNDGFGQYC 136 (189)
Q Consensus 93 aal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y-~~~ef~~~v 136 (189)
+--+.-.-+=.+--+.+.. .-++.-+.-|..- ++....+++
T Consensus 94 vKaYVg~gla~DFy~~va~---~L~~~~r~~v~~vl~~~~~s~f~ 135 (185)
T PF13794_consen 94 VKAYVGDGLAADFYREVAS---GLDPETRALVLDVLADTGHSEFA 135 (185)
T ss_dssp HHHHHHHHHHHHHHHHHCC---CS-HHHHHHHHHHS--HHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHh---cCCHHHHHHHHHHhccccchHHH
Confidence 7555444443332333332 1234445554433 344444443
Done!