Query 029730
Match_columns 189
No_of_seqs 128 out of 775
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:47:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibx_A TENA, HP1287, putative 100.0 3.1E-47 1.1E-51 307.2 13.3 173 1-188 44-221 (221)
2 3mvu_A TENA family transcripti 100.0 1E-46 3.6E-51 305.2 13.9 171 1-188 46-226 (226)
3 3no6_A Transcriptional activat 100.0 2.7E-47 9.4E-52 312.6 10.2 172 1-188 59-237 (248)
4 4fn6_A Thiaminase-2, thiaminas 100.0 2.4E-46 8.2E-51 303.6 11.7 172 1-188 40-218 (229)
5 2qcx_A Transcriptional activat 100.0 8.7E-44 3E-48 294.1 19.0 172 1-188 67-242 (263)
6 2f2g_A SEED maturation protein 100.0 1E-43 3.5E-48 286.2 17.3 176 1-188 43-220 (221)
7 1wwm_A Hypothetical protein TT 100.0 1.5E-43 5.1E-48 279.8 16.6 157 1-186 34-190 (190)
8 1z72_A Transcriptional regulat 100.0 1.4E-43 4.8E-48 286.2 16.4 168 1-187 53-224 (225)
9 3rm5_A Hydroxymethylpyrimidine 100.0 2E-43 6.9E-48 318.1 18.1 172 1-187 371-548 (550)
10 1rtw_A Transcriptional activat 100.0 2.3E-43 7.8E-48 284.3 15.5 170 1-188 39-208 (220)
11 2gm8_A TENA homolog/THI-4 thia 100.0 7E-44 2.4E-48 287.6 11.8 168 1-188 48-220 (221)
12 1udd_A Transcriptional regulat 100.0 2.1E-42 7.2E-47 279.7 12.2 168 1-188 42-214 (226)
13 2qzc_A Transcriptional activat 100.0 2.9E-42 1E-46 276.6 10.6 162 1-188 44-209 (214)
14 2a2m_A Hypothetical protein BT 100.0 5.8E-40 2E-44 270.5 14.1 163 1-188 87-251 (258)
15 3oql_A TENA homolog; transcrip 100.0 4.9E-31 1.7E-35 217.1 7.6 171 1-188 58-247 (262)
16 1rcw_A CT610, CADD; iron, DI-i 99.9 1.5E-26 5E-31 186.3 8.6 165 1-188 43-221 (231)
17 3dde_A TENA/THI-4 protein, dom 99.8 1.4E-20 4.8E-25 152.6 9.6 167 1-187 44-219 (239)
18 3hlx_A Pyrroloquinoline-quinon 99.8 8.4E-20 2.9E-24 149.9 10.0 164 2-187 47-227 (258)
19 3bjd_A Putative 3-oxoacyl-(acy 99.7 1.8E-16 6E-21 134.6 10.7 165 1-187 145-324 (332)
20 3b5o_A CADD-like protein of un 98.2 1.3E-05 4.5E-10 64.4 11.3 157 11-184 50-224 (244)
21 2veb_A Protoglobin; hemoprotei 60.7 19 0.00064 27.7 5.8 49 133-188 143-191 (195)
22 3l9k_W Dynein intermediate cha 47.9 25 0.00085 19.7 3.4 23 126-148 9-31 (38)
23 1wzd_A Heme oxygenase; electro 46.1 31 0.0011 26.3 5.0 86 64-152 99-187 (215)
24 1we1_A Heme oxygenase 1; oxido 44.3 45 0.0015 26.1 5.8 18 64-81 95-112 (240)
25 1wov_A Heme oxygenase 2; HOMO 40.7 50 0.0017 26.0 5.6 18 64-81 94-111 (250)
26 2jpq_A UPF0352 protein VP2129; 39.9 77 0.0026 20.7 5.4 49 126-176 6-66 (83)
27 2gyq_A YCFI, putative structur 39.9 1.1E+02 0.0039 22.6 11.3 71 3-79 21-92 (173)
28 1vp7_A Exodeoxyribonuclease VI 39.6 63 0.0022 22.0 5.1 39 128-177 28-66 (100)
29 2juw_A UPF0352 protein SO_2176 38.5 80 0.0027 20.5 5.4 49 126-176 6-66 (80)
30 2q32_A Heme oxygenase 2, HO-2; 38.4 68 0.0023 25.4 6.1 23 59-81 118-141 (264)
31 2ko2_A Reticulon-4; NOGO, memb 35.1 25 0.00084 23.0 2.4 47 98-146 12-61 (79)
32 2gs4_A Protein YCIF; stress pr 34.6 1.3E+02 0.0046 22.0 11.8 90 3-98 14-105 (166)
33 2jrx_A UPF0352 protein YEJL; h 32.9 79 0.0027 20.7 4.5 50 125-176 5-66 (83)
34 1unk_A Colicin E7; immunity pr 32.9 47 0.0016 22.0 3.5 39 124-176 7-46 (87)
35 3hiu_A Uncharacterized protein 31.8 1.4E+02 0.0047 22.0 6.4 58 3-65 11-70 (166)
36 3u43_A Colicin-E2 immunity pro 30.9 63 0.0021 21.7 3.9 38 124-175 7-44 (94)
37 2jr2_A UPF0352 protein CPS_261 28.0 1.2E+02 0.0042 19.4 5.0 48 126-176 6-65 (76)
38 1j02_A Heme oxygenase 1; alpha 27.1 63 0.0022 25.7 4.1 23 59-81 98-121 (267)
39 1xkp_A Putative membrane-bound 26.4 1.7E+02 0.0058 23.0 6.4 51 117-176 182-233 (246)
40 2juz_A UPF0352 protein HI0840; 25.8 94 0.0032 20.2 3.9 49 126-176 6-66 (80)
41 3ogh_B Protein YCIE; iron-bind 24.1 1.9E+02 0.0064 21.4 6.0 56 3-63 14-71 (171)
42 2vj4_A Protein MXIC, MXIC; sec 22.4 62 0.0021 26.3 3.2 27 117-143 135-161 (294)
43 2ov9_A Hypothetical protein; r 21.4 1.3E+02 0.0043 23.0 4.7 20 128-147 23-42 (216)
No 1
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=100.00 E-value=3.1e-47 Score=307.19 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=158.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh-HHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~-~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||++|+|++|++++|+|++++ +..+...+..+ .+|+.+|+.+++.+||+.+ ..+|+|+|++|++
T Consensus 44 YL~QD~~yl~~~~r~~a~~~aka~~~~~-----~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~aY~~ 118 (221)
T 3ibx_A 44 YIIQDYLYLLEYAKVFALGVVKACDEAV-----MREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTS 118 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHH-----HHHHHHHHHHHHSCTTSHHHHHHHHTTCCHHHHHHCCCCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCCHHHHHHHH
Confidence 3789999999999999999999999887 88888877665 5799999999999999863 4689999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhh
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
||+++ +.+|+++++++||+||+|+|.+||+++..... ..+++|++||++|+||+|.+.|++++++||++++.+++
T Consensus 119 ~l~~~-a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~--- 194 (221)
T 3ibx_A 119 YMLAE-GFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSK--- 194 (221)
T ss_dssp HHHHH-HHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCH---
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---
Confidence 99998 88899999999999999999999999875422 34789999999999999999999999999999988888
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 195 ------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 221 (221)
T 3ibx_A 195 ------QEIEKLKEIFITTSEYEYLFWDMAYQS 221 (221)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999975
No 2
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=100.00 E-value=1e-46 Score=305.20 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=156.3
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhH-HHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH-DEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~-~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||.+|+|+++++++|+|++++ +.++...+..+. +|+++|+.+++++||+.+ ..+++|+|++|++
T Consensus 46 YL~QD~~yl~~~~r~~a~~~aka~~~~~-----~~~~~~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~aY~~ 120 (226)
T 3mvu_A 46 YLQQDYVFLIHFSRAWALAVVKSETHSE-----MLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLAYTR 120 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSHHH-----HHHHHHHHHHHHTTHHHHHHHHHHHTTCCHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCCHHHHHHHH
Confidence 4789999999999999999999999887 888888777765 599999999999999863 5689999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHH-----HHHh-hc
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIAN-----RLLE-KA 150 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld-----~~~~-~~ 150 (189)
||+++ +.+|+++++++||+||+|+|.+||+++... +.++||++||++|+||+|.++|++++++|| +++. .+
T Consensus 121 ~l~~~-a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~--~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~ 197 (226)
T 3mvu_A 121 FVLEA-GYSGDLLDLLAALAPCVMGYGEIGKRLTAE--ATSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFT 197 (226)
T ss_dssp HHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHHHH--CSCSTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcchHHHHHcCCHHHHHHHHHHHHHHCchhHHHHhhhcc
Confidence 99998 888999999999999999999999998643 236899999999999999999999999999 8877 77
Q ss_pred chhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 151 SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
++ +++++|+++|+++|+||++||||||+.
T Consensus 198 ~~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 226 (226)
T 3mvu_A 198 SS---------PRWSRLCQTFHTATELEVGFWQMGLTP 226 (226)
T ss_dssp GS---------HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred Ch---------HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77 899999999999999999999999974
No 3
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=100.00 E-value=2.7e-47 Score=312.64 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=157.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh-HHHHHHHHHHHHHhCCCC----CCCCcchhhHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVEL----SETVPQKANQVYC 75 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~-~~E~~~h~~~~~~~gi~~----~~~~~~p~~~~Y~ 75 (189)
+|+|||+||.+|+|++|++++|||++++ +..+.+.+..+ .+|+++|+.+++++||+. ...+++|+|++||
T Consensus 59 YL~QD~~YL~~far~~a~a~aka~~~~~-----~~~~~~~~~~~~~~E~~lh~~~~~~~gi~~~~~~~~~~~~p~~~aYt 133 (248)
T 3no6_A 59 YLRADASYLKEFTNIYAMLIPKMSSMED-----VKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYI 133 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSCHHH-----HHHHHHHHHHHHTCCCHHHHHHHHHTTSCHHHHCCSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcCCCHHHHHHH
Confidence 4799999999999999999999999987 88888877664 679999999999999985 3468999999999
Q ss_pred HHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchh
Q 029730 76 RFLESLMSPE-VDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDD 153 (189)
Q Consensus 76 ~~l~~~~a~~-~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~ 153 (189)
+||+++ +.+ |+++++++||+||+|+|.+||+++..... .+++||++||++|+ |+|.+.|++++++||++++.+++
T Consensus 134 ~~ll~~-a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~-~ef~~~v~~~~~~ld~~~~~~s~- 210 (248)
T 3no6_A 134 KHMYFN-AFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS-TEMDELVDVFDQLMDRLTKHCSE- 210 (248)
T ss_dssp HHHHHH-HHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH-HHTHHHHHHHHHHHHHHTTTCCH-
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCH-
Confidence 999998 777 99999999999999999999999864322 24789999999999 99999999999999999999988
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 154 LIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 154 ~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 211 --------~~~~~l~~~F~~a~~lE~~Fwd~ay~~ 237 (248)
T 3no6_A 211 --------TEKKEIKENFLQSTIHERHFFNMAYIN 237 (248)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999975
No 4
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=100.00 E-value=2.4e-46 Score=303.56 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=157.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh-HHHHHHHHHHHHHhCCCCC----CCCcchhhHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL-HDEIAWFKKEASKWGVELS----ETVPQKANQVYC 75 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~-~~E~~~h~~~~~~~gi~~~----~~~~~p~~~~Y~ 75 (189)
+|+|||+||.+|+|++|++++|+|++++ +..+.+.+..+ .+|+.+|+.+++.+||+.+ ..+++|+|++|+
T Consensus 40 YL~QDy~yl~~~~r~~a~~~aka~~~~~-----~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~~~~~p~~~aY~ 114 (229)
T 4fn6_A 40 YLQADAAYLKEFTNLYALLIPKMNSMND-----VKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYI 114 (229)
T ss_dssp HHHHHHHTHHHHHHHHHHHSTTCCSHHH-----HHHHHHHHHHHHSCCCHHHHHHHHHHTSCHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcCCCHHHHHHH
Confidence 4789999999999999999999999987 88888877664 6799999999999999863 458999999999
Q ss_pred HHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchh
Q 029730 76 RFLESLMSPE-VDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDD 153 (189)
Q Consensus 76 ~~l~~~~a~~-~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~ 153 (189)
+||+++ +.+ |+++++++||+||+|+|.+||+++..... .++++|++||++|+ |+|.+.|++++++||++++.+++
T Consensus 115 ~~l~~~-a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~-~~f~~~v~~~~~~ld~~~~~~~~- 191 (229)
T 4fn6_A 115 KHMYFQ-AHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYS-TEMDDIINVFESLMNKLAESMSD- 191 (229)
T ss_dssp HHHHHH-HHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTTCCTTSTHHHHHHHHT-TTTHHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHH-HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCH-
Confidence 999998 777 99999999999999999999999875432 14689999999999 99999999999999999999988
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 154 LIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 154 ~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 192 --------~~~~~~~~~F~~a~~lE~~Fwd~a~~~ 218 (229)
T 4fn6_A 192 --------KELEQVKQVFLESCIHERRFFNMAMTL 218 (229)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999975
No 5
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=100.00 E-value=8.7e-44 Score=294.10 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=158.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||.+|+|+++.+++|+|++++ +..+...+.. +..|+.+|+.+++++||+.+ +.+|+|+|++|++
T Consensus 67 YL~QDy~yL~~f~r~la~a~aka~~~~~-----~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~l~~~~~~pat~aYt~ 141 (263)
T 2qcx_A 67 YVLQDSYYLTHFAKVQSFGAAYAKDLYT-----TGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSFTS 141 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHHHHH
Confidence 4799999999999999999999999987 8888887766 46699999999999999863 5789999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhc
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 156 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~ 156 (189)
||+++ +.+|+++++++||+||+|+|.++|+++..... ++++|++||++|++++|.+.|++++++||++++.+++
T Consensus 142 ~l~~~-a~~g~~~~~laAl~pC~w~Y~~ig~~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~---- 215 (263)
T 2qcx_A 142 HMYRS-VLSGNFAEILAALLPCYWLYYEVGEKLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTE---- 215 (263)
T ss_dssp HHHHH-HTTTCHHHHHHHHHHHHHHHHHHHHHHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCH----
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH----
Confidence 99998 88999999999999999999999999875433 3689999999999999999999999999999988888
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 157 GKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 157 ~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|.++|+++|+||++||||||++
T Consensus 216 -----~~~~~l~~~F~~a~~lE~~Fwd~a~~~ 242 (263)
T 2qcx_A 216 -----EVRAKMKENFVISSYYEYQFWGMAYRK 242 (263)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999975
No 6
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=100.00 E-value=1e-43 Score=286.17 Aligned_cols=176 Identities=65% Similarity=1.093 Sum_probs=156.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHh
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 80 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~ 80 (189)
+|+|||+||++|+|+++.+++|+|++++. .+++..+...+..+.+|+.+|+.+++++||+..+.+|+|+|++|++||++
T Consensus 43 yL~QDy~yl~~f~r~~a~~~~ka~~~~~~-~~~~~~l~~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~p~~~aY~~~l~~ 121 (221)
T 2f2g_A 43 WLGQDYLFVRRFVPFVASVLIRACKDSGE-SSDMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLED 121 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCCCHHHHHHHHHHHH
Confidence 37899999999999999999999998741 33467777777667889999999999999998667899999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccc
Q 029730 81 LMSPEVDYTVAITVFWAIEAVYQESFAHCLE--PDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGK 158 (189)
Q Consensus 81 ~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~--~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~ 158 (189)
+.+.+|+++++++||+||+|+|.++|+++.. ... +++|++||++|+|++|.+.|+++++++|++++.+++
T Consensus 122 ~~~~~~~~~~~~aAl~pc~~~Y~~i~~~l~~~~~~~--~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~------ 193 (221)
T 2f2g_A 122 LMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKT--PVELTGACHRWGNDGFKQYCSSVKNIAERCLENASG------ 193 (221)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHHTS--SSCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCH------
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH------
Confidence 5257899999999999999999999998854 222 248999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 159 AGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 159 ~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|.++|+++|+||++||||||++
T Consensus 194 ---~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2f2g_A 194 ---EVLGEAEDVLVRVLELEVAFWEMSRGG 220 (221)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999975
No 7
>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3
Probab=100.00 E-value=1.5e-43 Score=279.75 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=142.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHh
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 80 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~ 80 (189)
+|+|||+||.+|+|++|++++|||+.+ +..+...+..+.+| +.+++++||+. +.+++|+|++||+||++
T Consensus 34 Yl~QD~~yL~~f~r~~a~~~~ka~~~~------~~~~~~~~~~~~~E----~~~~~~~gi~~-~~~~~p~~~aY~~~l~~ 102 (190)
T 1wwm_A 34 WLQQDYPFVEALYRYQVGLLLEAPQAH------RAPLVQALMATVEE----LDWLLLQGASP-SAPVHPVRAGYIALLEE 102 (190)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHH----HHHHHTTTCCS-SSCCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCChHH------HHHHHHHHHHHHHH----HHHHHHcCCCC-CCCCCHHHHHHHHHHHH
Confidence 378999999999999999999999764 67777777666667 67888899997 67899999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccccc
Q 029730 81 LMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAG 160 (189)
Q Consensus 81 ~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~ 160 (189)
+ +. |+++++++|++||+|+|.+||+++.+ +++||++||++|+||+|.+.|+++++++|++++..++
T Consensus 103 ~-a~-~~~~~~~aAl~pc~~~Y~~ig~~l~~----~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~-------- 168 (190)
T 1wwm_A 103 M-GR-LPYAYRVVFFYFLNGLFLEAWAHHVP----EEGPWAELSQHWFAPEFQAVLYDLEVLARGLWEDLDP-------- 168 (190)
T ss_dssp H-HH-SCHHHHHHHHHHHHHHHHHHHHHHSC----SSSHHHHHHHHHSCTTHHHHHHHHHHHHHHHHTTSCH--------
T ss_pred H-cC-CCHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhCCH--------
Confidence 8 67 99999999999999999999999875 3578999999999999999999999999999988777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhh
Q 029730 161 DDVLKKAEVELIRVLEHEVEFWNMSR 186 (189)
Q Consensus 161 ~~~~~~~~~~F~~~~~lE~~FWd~a~ 186 (189)
++ |+++|+++|+||++||||||
T Consensus 169 -~~---~~~~F~~a~~lE~~Fwd~a~ 190 (190)
T 1wwm_A 169 -EV---VRTYLRRILEAEKATWSLLL 190 (190)
T ss_dssp -HH---HHHHHHHHHHHHHHHHHTTC
T ss_pred -HH---HHHHHHHHHHHHHHHHHhhC
Confidence 44 99999999999999999997
No 8
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=100.00 E-value=1.4e-43 Score=286.20 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=151.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||++|+|+++++++|+|++++ +..+...+.. +.+|+.+|+.+++++||+.+ +.+|+|+|++|++
T Consensus 53 YL~QDy~yl~~f~r~~a~~~~ka~~~~~-----~~~~~~~~~~~~~~E~~~~~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 127 (225)
T 1z72_A 53 YLIQDYHFFDAFLSMLGACVAHADKLES-----KLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQD 127 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcCCCHHHHHHHH
Confidence 4789999999999999999999999987 7888877766 56799999999999999874 4789999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhc
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 156 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~ 156 (189)
||+++ +.+|+++++++||+||+|+|.++|++ ... .+.+++|++||++|++++|.+.|+++++++|+++.. ++
T Consensus 128 ~l~~~-a~~~~~~~~~aAl~pc~~~Y~~i~~~-~~~-~~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~~~~-~~---- 199 (225)
T 1z72_A 128 LMYSA-VASSDYAHLLVMLVIAEGLYLDWGSK-DLA-LPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKN-RE---- 199 (225)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHHHHHHTC-SSC-CCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC--CC----
T ss_pred HHHHH-HccCCHHHHHHHHHHHHHHHHHHHHh-hcc-CCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC-CH----
Confidence 99998 88999999999999999999999998 542 344689999999999999999999999999999887 77
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 157 GKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 157 ~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
+++ +|+++|+++|+||++||||||+
T Consensus 200 -----~~~-~~~~~f~~a~~lE~~Fwd~a~~ 224 (225)
T 1z72_A 200 -----DLT-ELQQRWNQAVALELAFFDIGYD 224 (225)
T ss_dssp -----CHH-HHHHHHHHHHHHHHHHTTTTC-
T ss_pred -----HHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 777 9999999999999999999985
No 9
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=318.08 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=157.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHH-HHHHhCC-CC---CCCCcchhhHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKK-EASKWGV-EL---SETVPQKANQVYC 75 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~-~~~~~gi-~~---~~~~~~p~~~~Y~ 75 (189)
+|+|||+||.+|+|++|++++|||++++ +..+...+..+.+|+++|+. +++++|| +. +..+++|+|++|+
T Consensus 371 YL~QD~~yL~~far~~a~a~aka~~~~~-----~~~~~~~~~~i~~E~~~h~~~~~~~~gi~~~~~~~~~~~~p~~~aYt 445 (550)
T 3rm5_A 371 FIEQDYAYLVDYARVHCIAGSKAPCLED-----MEKELVIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPALRAYS 445 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTTTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhcCCCHHHHHHH
Confidence 4799999999999999999999999987 77887777778889999999 6779999 54 3468999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhh
Q 029730 76 RFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL 154 (189)
Q Consensus 76 ~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~ 154 (189)
+||+++ +.+|+++++++||+||+|+|.++|+++..... +.+++|++||++|+||+|.++|+++++++|++++.+++
T Consensus 446 ~~l~~~-a~~g~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~~~-- 522 (550)
T 3rm5_A 446 RYFNDV-SRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPP-- 522 (550)
T ss_dssp HHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHTTTTCCCSCTTSHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTSCG--
T ss_pred HHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH--
Confidence 999998 88899999999999999999999999865322 34689999999999999999999999999999999998
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 155 ~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
+++++|+++|+++|+||++||||||+
T Consensus 523 -------~~~~~l~~~F~~a~~lE~~Fwd~a~~ 548 (550)
T 3rm5_A 523 -------EQLDTLVTIYAEVCELETNFWTAALE 548 (550)
T ss_dssp -------GGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999996
No 10
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=100.00 E-value=2.3e-43 Score=284.30 Aligned_cols=170 Identities=25% Similarity=0.325 Sum_probs=151.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHHh
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 80 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~~ 80 (189)
+|+|||+||.+|+|++|.+++|+|++++ .+.+..+...+..+ |+++|+ ++++||+. +.+|+|+|++||+||++
T Consensus 39 YL~QDy~yl~~f~r~~a~~~~ka~~~~~--~~~~~~l~~~~~~i--E~~lh~--~~~~Gi~~-~~~~~p~t~aY~~~l~~ 111 (220)
T 1rtw_A 39 WLVNDYYFVKNALRFMALLMAKAPDDLL--PFFAESIYYISKEL--EMFEKK--AQELGISL-NGEIDWRAKSYVNYLLS 111 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGH--HHHHHHHHHHHHHH--HHHHHH--HHHTTCCS-SSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHHHH--HHHHHH--HHHCCCCC-CCCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999863 12256676666666 999999 89999998 77899999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccccc
Q 029730 81 LMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAG 160 (189)
Q Consensus 81 ~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~ 160 (189)
+ +.+|+++++++|++||+|+|.++|+++.+... ++++|++||++|+|++|.+.|+++++++|++++.+++
T Consensus 112 ~-a~~~~~~~~laAl~pc~~~Y~~i~~~l~~~~~-~~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~-------- 181 (220)
T 1rtw_A 112 V-ASLGSFLEGFTALYCEEKAYYEAWKWVRENLK-ERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGE-------- 181 (220)
T ss_dssp H-HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCCTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSCH--------
T ss_pred H-HccCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH--------
Confidence 8 88899999999999999999999998864322 3589999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 161 DDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 161 ~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|+++|+++|+||++||||||++
T Consensus 182 -~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 208 (220)
T 1rtw_A 182 -FEKERAREVFKEVSKFELIFWDIAYGG 208 (220)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999974
No 11
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=100.00 E-value=7e-44 Score=287.58 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=151.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||.+|+|++|.+++|+|++++ +..+...+.+ +.+|+++|+.+++++||+.+ +.+|+|+|++||+
T Consensus 48 YL~QDy~yl~~f~r~~a~~~~ka~~~~~-----~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 122 (221)
T 2gm8_A 48 YLLQDYNYLVNFAKALSLAASRAPSVDL-----MKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMA 122 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHHHHH
Confidence 4789999999999999999999999987 8888887766 67799999999999999863 4689999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhh
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
||+++ +.+|+++++++||+||+|+|.++|+++..... .++++|++||++|+|++|.+.|+++++++|++ +
T Consensus 123 ~l~~~-a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~-----~--- 193 (221)
T 2gm8_A 123 YLKST-CALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSS-----G--- 193 (221)
T ss_dssp HHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHTS-----S---
T ss_pred HHHHH-HhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCchHHHHHHHhCCHHHHHHHHHHHHHHHHh-----h---
Confidence 99998 88999999999999999999999998864322 13589999999999999999999999999986 4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|.++|+++|+||++||||||++
T Consensus 194 ------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 220 (221)
T 2gm8_A 194 ------LSAEELWPYFKEASLYELEFWQAAYEG 220 (221)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999975
No 12
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=100.00 E-value=2.1e-42 Score=279.69 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=149.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||.+|+|++|.+++|+ ++++ +..+...+.. +.+|+++|+.+++++||+.+ +.+|+|+|++||+
T Consensus 42 YL~QDy~yl~~f~r~~a~~~~ka-~~~~-----~~~l~~~~~~~i~~E~~lh~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 115 (226)
T 1udd_A 42 YVLQDFNYLVGLTRALAVISSKA-EYPL-----MAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMD 115 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CTTH-----HHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCCHHHHHHHH
Confidence 47899999999999999999999 8887 8888887766 77899999999999999863 4689999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhh
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI 155 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~-~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~ 155 (189)
||+++ +.+|+++++++||+||+|+|.++|+++..... .++++|++||++|+|++|.+.|+++++++|++ +.
T Consensus 116 ~l~~~-a~~~~~~~~laAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~----~~--- 187 (226)
T 1udd_A 116 FMLAT-AYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSS----GH--- 187 (226)
T ss_dssp HHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHTHHHHTTCSCHHHHHHHHGGGSHHHHHHHHHHHHHHHTS----CS---
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhCCHHHHHHHHHHHHHHHhC----ch---
Confidence 99998 88999999999999999999999999863211 13589999999999999999999999999986 31
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+++++|.++|+++|+||++||||||++
T Consensus 188 ------~~~~~~~~~f~~a~~lE~~Fwd~a~~~ 214 (226)
T 1udd_A 188 ------SGYDRLRRIFITGSKFELAFWEMAWRG 214 (226)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 246789999999999999999999964
No 13
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=100.00 E-value=2.9e-42 Score=276.63 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=146.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVYCR 76 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y~~ 76 (189)
+|+|||+||++|+|++|.+++|| ++++ +..+...+.. +.+|+++|+.+++++||+.+ +.+|+|+|++|++
T Consensus 44 Yl~QDy~yl~~f~r~~a~~~~ka-~~~~-----~~~~~~~~~~~i~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~t~aY~~ 117 (214)
T 2qzc_A 44 YLIQDGKYVEDMLRALLIASSKG-PIDK-----VTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYAYTR 117 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CHHH-----HHHHHHHHTCC--CHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhCCCChHHHHHHH
Confidence 37899999999999999999999 8877 8888887776 67899999999999999863 4689999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcchhhhc
Q 029730 77 FLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIM 156 (189)
Q Consensus 77 ~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~ 156 (189)
||+++ +.+ +++++++|++||+|+|.++|+++.+. ++++|++||++|+|++|.+.|+++++++|++ +
T Consensus 118 ~l~~~-a~~-~~~~~~aAl~pc~~~Y~~ig~~l~~~---~~~~y~~Wi~~y~~~~f~~~v~~~~~lld~~-----~---- 183 (214)
T 2qzc_A 118 HLYYY-ANL-DWNKFLVAWTPCMFGYSIVGDYVIDS---PNEVYKTWASFYASTEYKKRIEAILYALDEV-----S---- 183 (214)
T ss_dssp HHHHH-HHH-CHHHHHHHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHSHHHHHHHHHHHHHHTTS-----C----
T ss_pred HHHHH-Hhc-CHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHhCCHHHHHHHHHHHHHHHhC-----c----
Confidence 99998 777 99999999999999999999998753 3589999999999999999999999999986 3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 157 GKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 157 ~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
++++ +.++|+++|+||++||||||++
T Consensus 184 -----~~~~-~~~~f~~a~~~E~~Fwd~a~~~ 209 (214)
T 2qzc_A 184 -----ITED-LLNIFINSVRFEIGFWDASLRK 209 (214)
T ss_dssp -----CCHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----cHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 4677 9999999999999999999964
No 14
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=100.00 E-value=5.8e-40 Score=270.51 Aligned_cols=163 Identities=11% Similarity=0.017 Sum_probs=144.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCC-CCcchhhHHHHHHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE-TVPQKANQVYCRFLE 79 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~-~~~~p~~~~Y~~~l~ 79 (189)
+|+|||+||.+|+|++|++++|||+ ++ +..+...+..+.+ ++|+.+++++||+.+. .+++|+|++||+||+
T Consensus 87 YL~QDy~yL~~far~~a~a~aka~~-~~-----~~~~~~~~~~~~~--~lh~~~~~~~Gi~~~~~~~~~pat~aYt~~ll 158 (258)
T 2a2m_A 87 LMVQDGYYCFRGRDDYATAATCAQD-ET-----LREFFKAKAKSYD--EYNETYHQTWHLREASGLIPGTDIKDYADYEA 158 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSS-HH-----HHHHHHHHHHHHH--HHHHHHHHTSCBCCGGGBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc-HH-----HHHHHHHHHHHHH--HHHHHHHHHcCCCHHHccCCCHHHHHHHHHHH
Confidence 4799999999999999999999999 76 7777776666554 9999999999999754 688999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhh-hhCChhHHHHHHHHHHHHHHHHhhcchhhhccc
Q 029730 80 SLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQ-RWGNDGFGQYCHSLKKIANRLLEKASDDLIMGK 158 (189)
Q Consensus 80 ~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~-~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~ 158 (189)
++ +.+|+++++++||+||+|+|.+||+++..... ++++|++||+ +|+|+ +.|++++++||++++..
T Consensus 159 ~~-a~~g~~~~~laAl~pC~~~Y~eig~~l~~~~~-~~~~Y~~WI~~~Y~~~---~~v~~~~~lld~~~~~~-------- 225 (258)
T 2a2m_A 159 YV-AGSLASPYMCVVMLPCEYLWPWIANFLDGYTP-TNSLYRFWIEWNGGTP---NGAYQMGNMLEQYRDKI-------- 225 (258)
T ss_dssp HH-HHHSCTHHHHHHHHHHHHHHHHHHHHHGGGSC-TTSTTHHHHHHHCSCC---HHHHHHHHHHHTTGGGS--------
T ss_pred HH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHhccCCH---HHHHHHHHHHHHHHhhc--------
Confidence 98 78899999999999999999999999875322 3589999999 99999 89999999999986432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 159 AGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 159 ~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
.+++|+++|+++|+||++||||||+.
T Consensus 226 ----~~~~l~~~F~~a~~lE~~Fwd~a~~~ 251 (258)
T 2a2m_A 226 ----DEDKAVEIFNTAMNYELKVFTSSTIL 251 (258)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 25689999999999999999999975
No 15
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=99.97 E-value=4.9e-31 Score=217.08 Aligned_cols=171 Identities=11% Similarity=0.035 Sum_probs=139.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCC-cchHHHHHhhhhhhHHHH---HHHHHHHHHhCCCCC---CCCcchhhHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDS-KGDTEVILGGMAGLHDEI---AWFKKEASKWGVELS---ETVPQKANQV 73 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~-~~~~~~~~~~~~~~~~E~---~~h~~~~~~~gi~~~---~~~~~p~~~~ 73 (189)
+|+|||+||.+|+|++|++++|+++...+. ...+.++. .++..|+ ++|+.+++.+||+.+ ..+++|+|.+
T Consensus 58 Yl~QDy~YL~~far~~Al~~aKa~~~~~~~~~~~~~~l~---~~i~vE~~H~~~~~~f~~~~Gis~eel~~~~~~P~~~a 134 (262)
T 3oql_A 58 YLIGGWPVVEQFAVYMAKNLTKTRFGRHPGEDMARRWLM---RNIRVELNHADYWVNWCAAHDVTLEDLHDQRVAPELHA 134 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHH---HHHHHTTTHHHHHHHHHHTTTCCHHHHHHTCSCGGGGH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCccccCCChHHHHHHHH---HHHHHHHhhHHHHHHHHHHcCCCHHHHhcCCCChHHHH
Confidence 478999999999999999999999863311 11233333 3455565 444578999999974 4789999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHh---------hccCCCCC-CCchHHHHhhhhCChhHHHH-HHHHHHH
Q 029730 74 YCRFLESLMSPEVDYTVAITVFWAIEAVYQESFA---------HCLEPDTN-TPPELQEVCQRWGNDGFGQY-CHSLKKI 142 (189)
Q Consensus 74 Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~---------~~~~~~~~-~~~~y~~WI~~y~~~ef~~~-v~~l~~~ 142 (189)
||+||+++ +.+|+++++++|++ +|+|.+||+ .+...... .++.|.+||+.|+ +|... +.+..++
T Consensus 135 Yt~~ml~~-a~~g~l~e~lAAl~--ya~e~~ig~~s~~~~~g~~~~~~~~~~~~~~~~~w~~~h~--~~D~~H~~e~~~l 209 (262)
T 3oql_A 135 LSHWCWQT-SSSDSLAVAMAATN--YAIEGATGEWSAVVCSTGVYAEAFAEETRKKSMKWLKMHA--QYDDAHPWEALEI 209 (262)
T ss_dssp HHHHHHHH-HHHSCHHHHHHHTT--THHHHHHHHHHHHHHSSSHHHHTSCHHHHHHHHHHHHHHH--TCC-CHHHHHHHH
T ss_pred HHHHHHHH-HccCCHHHHHHHHH--HHHHHHhhhHHHHhhhhHHHhcCCCcccChHHHHHHHHHH--HHHHHhHHHHHHH
Confidence 99999998 88999999999998 999999998 44322112 1567999999999 89999 9999999
Q ss_pred HHHHHhhc-chhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 143 ANRLLEKA-SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 143 ld~~~~~~-~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+|+++.+. ++ +++++|+++|++++++|+.||||||+.
T Consensus 210 i~~l~~~~~~~---------~e~~~~~~a~~~S~~~~~~fld~~y~~ 247 (262)
T 3oql_A 210 ICTLVGNKPSL---------QLQAELRQAVTKSYDYMYLFLERCIQL 247 (262)
T ss_dssp HHHHHCSSCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999877 77 899999999999999999999999963
No 16
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=99.93 E-value=1.5e-26 Score=186.32 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=133.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhh----HHHHHHHHHHHHHhCCCCC---CCCcchhhHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGL----HDEIAWFKKEASKWGVELS---ETVPQKANQV 73 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~----~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~ 73 (189)
+|.|||+||.+|.|++|.+++|+|+++. +..+...+... ..|+++|.++++.+|++.+ +.++.|+|++
T Consensus 43 yl~qdy~yl~~f~~~~a~~~~~~~~~~~-----~~~~~~~i~~e~~~~~~h~~l~~~~~~~~Gi~~~~~~~~~~~p~t~~ 117 (231)
T 1rcw_A 43 YAKDYYLHIKAFPKYLSAIHSRCDDLEA-----RKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEELEAHEPSEAAKA 117 (231)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHHHHHCCCCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHhcCCCCChHHHHHHHHHHcCCCHHHHhcCCCCHHHHH
Confidence 3789999999999999999999999876 66666544332 3469999999999999863 4678999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhH-------HHHHHHHHHHHHHH
Q 029730 74 YCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGF-------GQYCHSLKKIANRL 146 (189)
Q Consensus 74 Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef-------~~~v~~l~~~ld~~ 146 (189)
|++||+++ +.+|++.++++|+++.++++..+.+...+ ..++|.+||+.|+++.| .+-++.+.+++|++
T Consensus 118 y~~~~~~~-~~~~~~~~~laal~~~E~~~~~~~~~~~~----~~~~~~~wi~~~~~~~f~~h~~~d~~h~~~~~~~l~~~ 192 (231)
T 1rcw_A 118 KVATFMRW-CTGDSLAAGVAALYSYESQIPRIAREKIR----GLTEYFGFSNPEDYAYFTEHEEADVRHAREEKALIEML 192 (231)
T ss_dssp HHHHHHHH-HTSSCHHHHHHHHHHHHTTHHHHHHHHHH----HHHHHSCCCSGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCChhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998 89999999999976556666655443321 11355689999999999 67889999999998
Q ss_pred HhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 147 LEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
+. ++++++.++|++++++|+.|||++|..
T Consensus 193 ~~-------------~~~~~~~~~~~~~~~le~~fwd~~~~~ 221 (231)
T 1rcw_A 193 LK-------------DDADKVLEASQEVTQSLYGFLDSFLDP 221 (231)
T ss_dssp CS-------------SCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 63 245689999999999999999999865
No 17
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=99.83 E-value=1.4e-20 Score=152.64 Aligned_cols=167 Identities=9% Similarity=0.057 Sum_probs=134.1
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCC--CCCcchHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCC---CCCcchhhHHH
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKES--DDSKGDTEVILGGMAG-LHDEIAWFKKEASKWGVELS---ETVPQKANQVY 74 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~--~~~~~~~~~~~~~~~~-~~~E~~~h~~~~~~~gi~~~---~~~~~p~~~~Y 74 (189)
+|.|||+||.+|+|+++.+++|+|+.+ . +..+...+.. +..|..+++. ++.+|++.+ ..+|+|+|.+|
T Consensus 44 yl~Qdy~yl~~~~r~la~a~~ka~~~~~~~-----~~~~~~~~~~e~~~e~~~~~~-l~~~G~~~~~~~~~~~~pat~aY 117 (239)
T 3dde_A 44 YMTETYHYTKHNAKNQALVGIMGKDLPGKY-----LSFCFHHAHEEAGHELMALSD-IASIGFDREDVLSSKPLPATETL 117 (239)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCSSCCHHH-----HHHHHHHHHHHTTTHHHHHHH-HHHTTCCHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHH-----HHHHHHHHHHHHChHHHHHHH-HHHhCCCHHHHHhCCCChHHHHH
Confidence 378999999999999999999999987 5 6666664433 4567666666 889999963 46889999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcc
Q 029730 75 CRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLE---PDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKAS 151 (189)
Q Consensus 75 ~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~---~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~ 151 (189)
++||+.+ +..|++.++++++++|+|+| +++..+.. ..-.-++...+|+..|+..+-. -++.++.+||++. .+
T Consensus 118 ~~~l~~~-a~~~~~~~~la~~~~~E~~y-~~~~~~~~~l~~~~~l~~~~~~f~~~h~~~d~~-h~~~~~~~ld~~~--~~ 192 (239)
T 3dde_A 118 IAYLYWI-SATGNPVQRLGYSYWAENVY-GYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAK-HAEEVNEMLHEVC--KT 192 (239)
T ss_dssp HHHHHHH-HHSSCGGGGHHHHHHHHTCH-HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHH-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCcCHHHHHHHHHHHhcchh-HHHHHHHHHHHHc--CC
Confidence 9999998 78899999999999999999 66654321 0111123357999999887754 4578999999875 46
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 152 DDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
+ ++.+++.+..+.++++.+.|++..+.
T Consensus 193 ~---------~~~~~ii~~a~~~~~l~~~~f~~l~~ 219 (239)
T 3dde_A 193 Q---------EDVDSVVAVMENSLVLTARILDDVWK 219 (239)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 89999999999999999999998763
No 18
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=99.81 E-value=8.4e-20 Score=149.87 Aligned_cols=164 Identities=7% Similarity=-0.087 Sum_probs=127.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhH------HHHHHHHHHHHHhCCCCC---CCC-cchhh
Q 029730 2 QGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLH------DEIAWFKKEASKWGVELS---ETV-PQKAN 71 (189)
Q Consensus 2 l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~------~E~~~h~~~~~~~gi~~~---~~~-~~p~~ 71 (189)
++|||.|+.+|.|.+|.+++|+|+++. ++.++..+.... +|+++|..+++.+|++.+ +.+ +.|+|
T Consensus 47 v~qdy~Yl~~f~r~~A~i~ak~~d~e~-----rr~l~~ni~~eeg~~~~~~hiel~~~fa~alGis~eel~~~~~~~P~t 121 (258)
T 3hlx_A 47 VANRFYYQTTIPLKDAAIMANCPDAQT-----RRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGV 121 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHH-----HHHHHHHHHHHHCSSSSCHHHHHHHHHHHHTTCCHHHHHTCCSCCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHhcccCCccHHHHHHHHHHHcCCCHHHHhhCCCCCcHH
Confidence 689999999999999999999999876 777776543322 678999999999999963 455 69999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHH-------HHHHH
Q 029730 72 QVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSL-------KKIAN 144 (189)
Q Consensus 72 ~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l-------~~~ld 144 (189)
+.|++.+.+. +.+|++.++++|+++|.++=.-...++. .-++|..||+.++.+.|..-+.+. .+++
T Consensus 122 ~~~vdaY~~~-a~~~s~~e~vAA~L~E~~~p~i~~~r~~-----~~~~~y~~i~~~~l~yF~~h~~~a~~D~~hal~~v- 194 (258)
T 3hlx_A 122 RFAVDAYLNF-ARRACWQEAACSSLTELFAPQIHQSRLD-----SWPQHYPWIKEEGYFFFRSRLSQANRDVEHGLALA- 194 (258)
T ss_dssp HHHHHHHHHH-HHHSCHHHHHHGGGGGGTHHHHHHHHHH-----HHHHHCTTSCGGGGHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHhh-----cHHHhCCCCChhHHHHHHHHhhcccccHHHHHHHH-
Confidence 9888777776 6778999999999965543111111221 135677899999999998877555 4454
Q ss_pred HHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 145 RLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
+..-.++ ++++++.+++..+|+++|.|||.+|.
T Consensus 195 -l~~~~t~---------e~q~~a~~a~~~~~~~lw~~lDa~~~ 227 (258)
T 3hlx_A 195 -KAYCDSA---------EKQNRMLEILQFKLDILWSMLDAMTM 227 (258)
T ss_dssp -HHHCCSH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222355 89999999999999999999998874
No 19
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=99.67 E-value=1.8e-16 Score=134.58 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=123.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhhccCCCCCCcchHHHHHh----hhhhhHHH---HHHHHHHHHHhCCCCC--CCCcchhh
Q 029730 1 MQGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG----GMAGLHDE---IAWFKKEASKWGVELS--ETVPQKAN 71 (189)
Q Consensus 1 ~l~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~----~~~~~~~E---~~~h~~~~~~~gi~~~--~~~~~p~~ 71 (189)
++.|||+|+..|++.++.+++|+|+++. +..+.. -.+..+.| .++|..+++.+|++.+ ..++.|++
T Consensus 145 yl~Qdy~yl~~f~~~lA~~~a~~~~~~~-----r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~~~~~~~~p~~ 219 (332)
T 3bjd_A 145 FLRHQWFRTFRLYRDAADLLVNLTDVDE-----AAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEADFQAVSTMPEE 219 (332)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCCSHHH-----HHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCCTTCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChhHhcccCCHHH
Confidence 3789999999999999999999999875 555544 22233456 8999999999999964 35668999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHH----HHHHHHHHHHhhccCCCC-C-CCchHHHHhhhhCChhHHHHHHHHHHHHHH
Q 029730 72 QVYCRFLESLMSPEVDYTVAITVFW----AIEAVYQESFAHCLEPDT-N-TPPELQEVCQRWGNDGFGQYCHSLKKIANR 145 (189)
Q Consensus 72 ~~Y~~~l~~~~a~~~~~~~~laal~----pc~w~Y~~~~~~~~~~~~-~-~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~ 145 (189)
..|++++..+ +.+|++.+++++++ ||.|+|.++++.+...+. + ..++|++||+.-....+..+ ..++++
T Consensus 220 ~~~v~~~~~~-~~~~~~~~alaal~~~E~~~p~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~~H~~~~~----~~ll~~ 294 (332)
T 3bjd_A 220 IAYLNNRARA-FRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGLSEDQAEYYKVHISLVPPRAKREW----QLIARR 294 (332)
T ss_dssp HHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC---CTTH----HHHHTT
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCcccchHHHHHHHHhHHHHHHHH----HHHHHh
Confidence 9999999998 78999999999999 999999999887754222 2 23789999999776554444 225554
Q ss_pred HHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhC
Q 029730 146 LLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 187 (189)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~ 187 (189)
.. ++ +..+.+..+-.+.+++++.|||..|.
T Consensus 295 ~~---~~---------~~q~~~~~a~~~~l~~~~~f~D~l~~ 324 (332)
T 3bjd_A 295 IP---DV---------QFQNAFLTSLSQHFRVERAYYDAIWE 324 (332)
T ss_dssp TT---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 22 33345555556666999999998874
No 20
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=98.23 E-value=1.3e-05 Score=64.36 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHH----------HHHHHHHH-HhCCCCCCCCcchhhHHHHHHHH
Q 029730 11 EFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEI----------AWFKKEAS-KWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 11 ~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~----------~~h~~~~~-~~gi~~~~~~~~p~~~~Y~~~l~ 79 (189)
.|.|.++-+.+++++.-.. ...-.+......++.+|+ .+|+++++ .+|++..+.+|.|+|+.+++-|.
T Consensus 50 ~F~ryL~~l~~~~~~~l~~-~~~~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~~~p~~sT~~~idt~~ 128 (244)
T 3b5o_A 50 IFPKELVGFTELARRKALG-AGWNGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKNTMPSVATSKLLRTVL 128 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccc-ccchHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCccccCCCchHHHHHHHHH
Confidence 3477778888877663000 000111222234677775 59999999 99999988899999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCCCCchHHHHhhhhCChhHHHHHHHHHHHHHHHHhhcch
Q 029730 80 SLMSPEVDYTVAITVFWAIEAV-------YQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASD 152 (189)
Q Consensus 80 ~~~a~~~~~~~~laal~pc~w~-------Y~~~~~~~~~~~~~~~~~y~~WI~~y~~~ef~~~v~~l~~~ld~~~~~~~~ 152 (189)
+.+ +.++..++.|+...+.+ |.++-+.+.+. .-+..-..+.+.|..+.=.+=.+.+.++++.. ++.
T Consensus 129 ~lc--s~d~~~aLGA~yatE~iaipe~~ly~~li~gL~~~--~~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~---~~~ 201 (244)
T 3b5o_A 129 SLF--DRQVDYVLGATYAIEATSIPELTLIVKLVEWLHEG--AIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAY---IQP 201 (244)
T ss_dssp HHH--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHHHHC-------CHHHHHHHTT---CCG
T ss_pred HHh--CCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCchhHHHHHHHHhhhhHHHHHHHHHHHHHHH---Hhh
Confidence 984 77889999998766554 55555555432 22233446667675421122333455555533 233
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 029730 153 DLIMGKAGDDVLKKAEVELIRVLEHEVEFWNM 184 (189)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ 184 (189)
++..++.+-+++++.....||+.
T Consensus 202 ---------eef~~~~~G~~~~Lda~~~fWdg 224 (244)
T 3b5o_A 202 ---------EEFGEFAAGFRAMIDAMQVWWQE 224 (244)
T ss_dssp ---------GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999985
No 21
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=60.67 E-value=19 Score=27.70 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHhhhhhhCC
Q 029730 133 GQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 188 (189)
Q Consensus 133 ~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~a~~~ 188 (189)
..++.-+..++-+..++... .+++.++|.+++.++|-|...+|..+|..
T Consensus 143 ia~i~~i~~~i~~~l~~~~~-------~~~~~~~~~~A~~K~~~l~val~~~~Y~~ 191 (195)
T 2veb_A 143 VAFIYPITATMKPFLARKGH-------TPEEVEKMYQAWFKATTLQVALWSYPYVK 191 (195)
T ss_dssp HHTHHHHHHTTHHHHTSSSC-------CHHHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34555555555555543332 12788999999999999999999999964
No 22
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=47.89 E-value=25 Score=19.67 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.9
Q ss_pred hhCChhHHHHHHHHHHHHHHHHh
Q 029730 126 RWGNDGFGQYCHSLKKIANRLLE 148 (189)
Q Consensus 126 ~y~~~ef~~~v~~l~~~ld~~~~ 148 (189)
-..|++|..++++-.++++++..
T Consensus 9 I~~S~~F~~F~~rsskviERAL~ 31 (38)
T 3l9k_W 9 IILSENFQRFVVRAGRVIERALS 31 (38)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999998753
No 23
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=46.07 E-value=31 Score=26.31 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCCcchhhHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCchHHHHhhhhCChhHHHHHHHHH
Q 029730 64 ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLE---PDTNTPPELQEVCQRWGNDGFGQYCHSLK 140 (189)
Q Consensus 64 ~~~~~p~~~~Y~~~l~~~~a~~~~~~~~laal~pc~w~Y~~~~~~~~~---~~~~~~~~y~~WI~~y~~~ef~~~v~~l~ 140 (189)
..+|+|++..|++++..+ +...+....++.++.-+-+=.--|+-+.+ +.-..+..=-.+...+..++=...-+..+
T Consensus 99 ~~~~~~a~~~yv~~i~~~-~~~~~p~~~lg~~Yv~YeG~~~GGq~i~~~~~~~l~l~~~g~~f~~~~~~~~~~~~~~~fr 177 (215)
T 1wzd_A 99 RITASPAVIDYVNRLEEI-RDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYR 177 (215)
T ss_dssp HCCCCHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGCGGGCCTTCSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcCcccceeeecCCcCCHHHHHHHHH
Confidence 457899999999999875 32221333344333332221111222211 00001111113334444333456677778
Q ss_pred HHHHHHHhhcch
Q 029730 141 KIANRLLEKASD 152 (189)
Q Consensus 141 ~~ld~~~~~~~~ 152 (189)
..+|++ ..++
T Consensus 178 ~~Ld~~--~~~~ 187 (215)
T 1wzd_A 178 EKLNNL--ELSD 187 (215)
T ss_dssp HHHHTC--CCCH
T ss_pred HHHhcC--CCCH
Confidence 888875 4455
No 24
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1
Probab=44.28 E-value=45 Score=26.05 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCcchhhHHHHHHHHhh
Q 029730 64 ETVPQKANQVYCRFLESL 81 (189)
Q Consensus 64 ~~~~~p~~~~Y~~~l~~~ 81 (189)
..+|+|++..|+.++..+
T Consensus 95 ~~~p~~a~~~yv~~i~~i 112 (240)
T 1we1_A 95 EVKISAAGQAYVDRVRQV 112 (240)
T ss_dssp HCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 357889999999999876
No 25
>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A*
Probab=40.73 E-value=50 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.6
Q ss_pred CCCcchhhHHHHHHHHhh
Q 029730 64 ETVPQKANQVYCRFLESL 81 (189)
Q Consensus 64 ~~~~~p~~~~Y~~~l~~~ 81 (189)
..+|+|++..|+.++..+
T Consensus 94 ~~~p~~a~~~yv~~i~~i 111 (250)
T 1wov_A 94 IIQPTPCAKIYVDRLKTI 111 (250)
T ss_dssp HCCCCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 457889999999999886
No 26
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=39.88 E-value=77 Score=20.72 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=33.7
Q ss_pred hhCChhHHHHHHHHHHHHHHHHhhcchhh------------hccccchHHHHHHHHHHHHHHH
Q 029730 126 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 126 ~y~~~ef~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
-|+++.+.+...++...+++. +++.|. ....-.+.+|+.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jpq_A 6 KYTDEQVEKILAEVALVLEKH--AASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFAQALM 66 (83)
T ss_dssp CSCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 488899999999999998874 333221 1111234788889999988764
No 27
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=39.86 E-value=1.1e+02 Score=22.60 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=51.5
Q ss_pred hhhHHHH-HHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHH
Q 029730 3 GQDYIFV-REFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLE 79 (189)
Q Consensus 3 ~QD~~YL-~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~~Y~~~l~ 79 (189)
.+|.++. +...+++-..+.++.+|+- ...|...+....+-++.-+.+++.+|.++.. ...|+....+.-..
T Consensus 21 L~Diy~aE~q~~~aL~~~~~~a~~p~L-----k~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~-~~c~am~gli~e~~ 92 (173)
T 2gyq_A 21 LRDIYYAEQQITKALPKMIEQATNRDL-----SQGLTSHLEETQKQIERLDQVFKKLGQKPSG-VNCPAIDGLIKEAD 92 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTCCSCS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHH
Confidence 4678888 4788999999999999775 5556665656666778888889999988742 34466666665543
No 28
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=39.57 E-value=63 Score=21.97 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 029730 128 GNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177 (189)
Q Consensus 128 ~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~l 177 (189)
....|.+...+|..+|+++-..- -.++...+.|.+++.|
T Consensus 28 ~~~sFEeal~eLEeIV~~LE~ge-----------l~LEesl~lyeeG~~L 66 (100)
T 1vp7_A 28 LPQDFETALAELESLVSAMENGT-----------LPLEQSLSAYRRGVEL 66 (100)
T ss_dssp BCCSHHHHHHHHHHHHHHHHTTC-----------SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHH
Confidence 34579999999999999984322 2355556666666554
No 29
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=38.52 E-value=80 Score=20.51 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=33.8
Q ss_pred hhCChhHHHHHHHHHHHHHHHHhhcchhh------------hccccchHHHHHHHHHHHHHHH
Q 029730 126 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 126 ~y~~~ef~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
-|+++.+.+...++...+++. +++.|. ....-.+.+|+.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (80)
T 2juw_A 6 KYSNTQVESLIAEILVVLEKH--KAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFAKALA 66 (80)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 488899999999999998874 333321 1111234788889999988764
No 30
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*
Probab=38.36 E-value=68 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCC-CCCCcchhhHHHHHHHHhh
Q 029730 59 GVEL-SETVPQKANQVYCRFLESL 81 (189)
Q Consensus 59 gi~~-~~~~~~p~~~~Y~~~l~~~ 81 (189)
|-+. +..+|+|++..|+.++..+
T Consensus 118 G~~w~~~~~p~~a~~~yv~~i~~i 141 (264)
T 2q32_A 118 GENWEEQVQAPKAAQKYVERIHYI 141 (264)
T ss_dssp CTTGGGGCCCCHHHHHHHHHHHHH
T ss_pred CCCccccCCCChHHHHHHHHHHHH
Confidence 5543 2467899999999999876
No 31
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=35.08 E-value=25 Score=23.00 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhccCCCCCCCchHHHHhhh---hCChhHHHHHHHHHHHHHHH
Q 029730 98 IEAVYQESFAHCLEPDTNTPPELQEVCQR---WGNDGFGQYCHSLKKIANRL 146 (189)
Q Consensus 98 c~w~Y~~~~~~~~~~~~~~~~~y~~WI~~---y~~~ef~~~v~~l~~~ld~~ 146 (189)
.+++|..+.+.+.. +..++||+.+++. -+.+...+.++.....+|..
T Consensus 12 sfRiYk~vlqavqK--td~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~ 61 (79)
T 2ko2_A 12 GMRIYKGVIQAIQK--SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNST 61 (79)
T ss_dssp -CTHHHHTHHHHHC--TTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCCCccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 46788888877754 3457899999984 35677777777777777643
No 32
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=34.63 E-value=1.3e+02 Score=21.98 Aligned_cols=90 Identities=9% Similarity=0.030 Sum_probs=59.3
Q ss_pred hhhHHHH-HHHHHHHHHHHhhccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHH-hCCCCCCCCcchhhHHHHHHHHh
Q 029730 3 GQDYIFV-REFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASK-WGVELSETVPQKANQVYCRFLES 80 (189)
Q Consensus 3 ~QD~~YL-~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~-~gi~~~~~~~~p~~~~Y~~~l~~ 80 (189)
.+|.++. +...+++-..+.++.+|+- ...|...+....+-+..-+.+++. +|.++.. ...|+....+.-...
T Consensus 14 L~D~y~aE~q~~~al~~~~~~a~~p~L-----k~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~-~~c~am~gli~e~~~ 87 (166)
T 2gs4_A 14 LSDTYSAEKQLTRALAKLARATSNEKL-----SQAFHAHLEETHGQIERIDQVVESESNLKIKR-MKCVAMEGLIEEANE 87 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHH
Confidence 4677787 4788899999999999775 555666565666677888889998 9988742 345677766665544
Q ss_pred hcCCCCCHHHHHHHHHHH
Q 029730 81 LMSPEVDYTVAITVFWAI 98 (189)
Q Consensus 81 ~~a~~~~~~~~laal~pc 98 (189)
+....++-...=+++..+
T Consensus 88 ~~~~~~~~~vlda~li~a 105 (166)
T 2gs4_A 88 VIESTEKNEVRDAALIAA 105 (166)
T ss_dssp HHTSCCCHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHH
Confidence 422333433334444333
No 33
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=32.94 E-value=79 Score=20.66 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred hhhCChhHHHHHHHHHHHHHHHHhhcchhh------------hccccchHHHHHHHHHHHHHHH
Q 029730 125 QRWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 125 ~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
.-|+++.+.+...++...+++. +++.|. ....-.+.+|+.+.+.|.+++.
T Consensus 5 SKYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jrx_A 5 SRYSDEQVEQLLAELLNVLEKH--KAPTDLSLMVLGNMVTNLINTSIAPAQRQAIANSFARALQ 66 (83)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 3588999999999999999874 333321 1111133678888888888764
No 34
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=32.88 E-value=47 Score=22.04 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=25.8
Q ss_pred hhhhCChhHHHHHHHHHHHHHHHHhh-cchhhhccccchHHHHHHHHHHHHHHH
Q 029730 124 CQRWGNDGFGQYCHSLKKIANRLLEK-ASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 124 I~~y~~~ef~~~v~~l~~~ld~~~~~-~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
|..|+-.||-++|+.+...- . .+. ++...+...|.+.++
T Consensus 7 i~DYTE~EFl~fv~~i~~~~-----~~~~e---------~~~d~lv~hF~~ite 46 (87)
T 1unk_A 7 ISDYTEAEFVQLLKEIEKEN-----VAATD---------DVLDVLLEHFVKITE 46 (87)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-----HSSCC---------HHHHHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHhCC-----CCCCh---------hHHHHHHHHHHHhcC
Confidence 56788888887777766441 1 233 455778888888765
No 35
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=31.80 E-value=1.4e+02 Score=22.02 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=42.6
Q ss_pred hhhHHHH-HHHHHHHHHHHhh-ccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCCCC
Q 029730 3 GQDYIFV-REFVAFAASVLVK-AWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSET 65 (189)
Q Consensus 3 ~QD~~YL-~~y~r~~a~~~~k-a~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~ 65 (189)
.||.++. +...+++-..+.+ +.+|+- ...|...+.....-++.-+.+++.+|.++...
T Consensus 11 L~Diy~aE~Q~~~aL~~ma~~~a~~peL-----k~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~ 70 (166)
T 3hiu_A 11 LQDAYAMEKEAETMMAAMASRIEHYPEL-----KRRIEQHVEETQQQSAGVQRCLELLNGSIPTA 70 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 3677777 4778888888887 777764 55566666666677888888999999987543
No 36
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=30.88 E-value=63 Score=21.73 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=22.5
Q ss_pred hhhhCChhHHHHHHHHHHHHHHHHhhcchhhhccccchHHHHHHHHHHHHHH
Q 029730 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 175 (189)
Q Consensus 124 I~~y~~~ef~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~ 175 (189)
|+.|+-.||-++|+.+... ...++ ++...+...|.+.+
T Consensus 7 i~DyTe~Efi~lv~~I~~~-----~~~~E---------~e~d~ll~~fe~it 44 (94)
T 3u43_A 7 ISDYTEAEFLEFVKKICRA-----EGATE---------EDDNKLVREFERLT 44 (94)
T ss_dssp GGGSBHHHHHHHHHHHHHT-----CCSSH---------HHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHhc-----CCCCH---------HHHHHHHHHHHHhC
Confidence 5667767776666666541 11233 56666777777665
No 37
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=28.03 E-value=1.2e+02 Score=19.42 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=33.6
Q ss_pred hhCChhHHHHHHHHHHHHHHHHhhcchhh------------hccccchHHHHHHHHHHHHHHH
Q 029730 126 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 126 ~y~~~ef~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
-|+++.+.+...++...+++. +++.|. .. .-.+.+|+.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGN~vTnlln-~V~~~qR~~iAe~Fa~AL~ 65 (76)
T 2jr2_A 6 KYSNERVEKIIQDLLDVLVKE--EVTPDLALMCLGNAVTNIIA-QVPESKRVAVVDNFTKALK 65 (76)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 488899999999999998874 333321 11 1234788888889988764
No 38
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*
Probab=27.06 E-value=63 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.1
Q ss_pred CCCC-CCCCcchhhHHHHHHHHhh
Q 029730 59 GVEL-SETVPQKANQVYCRFLESL 81 (189)
Q Consensus 59 gi~~-~~~~~~p~~~~Y~~~l~~~ 81 (189)
|-+. +..+|+|++..|+.++..+
T Consensus 98 G~~w~~~~~p~~a~~~yv~~i~~i 121 (267)
T 1j02_A 98 GPHWQEAIPYTPATQHYVKRLHEV 121 (267)
T ss_dssp CTTGGGTSCCCHHHHHHHHHHHHH
T ss_pred CCCccccCCCChHHHHHHHHHHHH
Confidence 5553 2567899999999999876
No 39
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=26.44 E-value=1.7e+02 Score=23.00 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=33.6
Q ss_pred CchHHHHhhhhCChhHHHHHHHHHHHH-HHHHhhcchhhhccccchHHHHHHHHHHHHHHH
Q 029730 117 PPELQEVCQRWGNDGFGQYCHSLKKIA-NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 117 ~~~y~~WI~~y~~~ef~~~v~~l~~~l-d~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
...|..|++.|+..+|...++.+.+-+ ..+....+. -...++..++...-.
T Consensus 182 ~~~~~~~~~~yg~~~~~~vl~fL~~AL~~DL~S~~pS---------i~~~~L~~lls~L~~ 233 (246)
T 1xkp_A 182 YAIWSDLQXRFPNGDIDSVILFLQXALSADLQSQQSG---------SGREXLGIVISDLQX 233 (246)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHCCCS---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhcCCC---------CCHHHHHHHHHHHHH
Confidence 357999999999999999999886654 344433322 344555555544433
No 40
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=25.77 E-value=94 Score=20.17 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=34.2
Q ss_pred hhCChhHHHHHHHHHHHHHHHHhhcchhh------------hccccchHHHHHHHHHHHHHHH
Q 029730 126 RWGNDGFGQYCHSLKKIANRLLEKASDDL------------IMGKAGDDVLKKAEVELIRVLE 176 (189)
Q Consensus 126 ~y~~~ef~~~v~~l~~~ld~~~~~~~~~~------------~~~~~~~~~~~~~~~~F~~~~~ 176 (189)
-|+++.+.+...++...+++. +++.|. ....-.+.+++.+.+.|.+++.
T Consensus 6 KYsd~qvE~ll~eli~VLEKH--~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~ 66 (80)
T 2juz_A 6 KYSDAQLSAIVNDMIAVLEKH--KAPVDLSLIALGNMASNLLTTSVPQTQCEALAQAFSNSLI 66 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHHHTTSSCSTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 488999999999999999875 333321 1111234678888889988764
No 41
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=24.06 E-value=1.9e+02 Score=21.40 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=41.0
Q ss_pred hhhHHHH-HHHHHHHHHHHhh-ccCCCCCCcchHHHHHhhhhhhHHHHHHHHHHHHHhCCCCC
Q 029730 3 GQDYIFV-REFVAFAASVLVK-AWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63 (189)
Q Consensus 3 ~QD~~YL-~~y~r~~a~~~~k-a~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~ 63 (189)
.||.++. +...+++-..+.+ +.+|+- ...|...+.....-++.-+.+++.+|.++.
T Consensus 14 L~Diy~aE~Q~~~aL~~ma~~~a~~peL-----k~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~ 71 (171)
T 3ogh_B 14 LRDAHAMEKQAESMLESMASRIDNYPEL-----RARIEQHLSETKNQIVQLETILDRNDISRS 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3677777 4778888889888 567764 555666666666677888888898988763
No 42
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=22.42 E-value=62 Score=26.34 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=23.4
Q ss_pred CchHHHHhhhhCChhHHHHHHHHHHHH
Q 029730 117 PPELQEVCQRWGNDGFGQYCHSLKKIA 143 (189)
Q Consensus 117 ~~~y~~WI~~y~~~ef~~~v~~l~~~l 143 (189)
...|++||+.|+..++...++.+..-+
T Consensus 135 ~~ly~~w~~~yg~~~r~~v~~Fl~~aL 161 (294)
T 2vj4_A 135 TDQYIEWLGNFGFNHRHTIVNFVEQSL 161 (294)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 468999999999999999999887655
No 43
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5
Probab=21.39 E-value=1.3e+02 Score=22.96 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 029730 128 GNDGFGQYCHSLKKIANRLL 147 (189)
Q Consensus 128 ~~~ef~~~v~~l~~~ld~~~ 147 (189)
.+++|..+++.+++++|...
T Consensus 23 ~~~~~~~~~~~~r~l~d~~~ 42 (216)
T 2ov9_A 23 DGSAVDRATDAARRVVDALL 42 (216)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHh
Confidence 68999999999999999764
Done!