BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029733
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7SY06|HADC_DANRE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase OS=Danio rerio GN=ptplad1 PE=2 SV=2
Length = 359
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K +LF YN +Q G WI + +L S TF + ++++ Q A +EV++ A
Sbjct: 144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
VG++ +GV F+Q GR V + +Q+ P +F F W IE+
Sbjct: 204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIEI 253
>sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2
Length = 254
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%)
Query: 11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
YL YN + AGW+V L+ L+ S + S + + QT A LE++H A+GI+
Sbjct: 41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100
Query: 71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
PS V L +Q R + +VQ S+ + +AW + E+
Sbjct: 101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146
>sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 2 OS=Pongo abelii GN=PTPLB PE=2 SV=1
Length = 255
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
YL YN + AGW+V L+ L+ S + S + + QT A LE++H A+GI+
Sbjct: 42 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 101
Query: 71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
PS V L Q R + +VQ S+ + +AW + E+
Sbjct: 102 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 147
>sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 2 OS=Homo sapiens GN=PTPLB PE=1 SV=1
Length = 254
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
YL YN + AGW+V L+ L+ S + S + + QT A LE++H A+GI+
Sbjct: 41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100
Query: 71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
PS V L Q R + +VQ S+ + +AW + E+
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146
>sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 2 OS=Mus musculus GN=Ptplb PE=2 SV=1
Length = 254
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
YL YN + AGW+V L+ L+ S + S + QT A LE++H A+GI+
Sbjct: 41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100
Query: 71 PSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
PS V L Q R + +VQ S+ + +AW + E+
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEI 146
>sp|Q8K2C9|HACD3_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 3 OS=Mus musculus GN=ptplad1 PE=1 SV=2
Length = 362
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K YLF YN +Q G WI + +L +S TF + ++++ Q A +E ++ A
Sbjct: 147 KGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAA 206
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+G+ + V +Q+ GR + + ++Q+ +F F +W IE+
Sbjct: 207 IGVTSTPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEI 256
>sp|Q9P035|HACD3_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 3 OS=Homo sapiens GN=PTPLAD1 PE=1 SV=2
Length = 362
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K YLF YN +Q G WI + +L +S TF + ++++ Q A +E ++ A
Sbjct: 147 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 206
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+G+ S V +Q GR + + ++Q+ +F F W IE+
Sbjct: 207 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 256
>sp|Q5NVQ2|PTAD1_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 3 OS=Pongo abelii GN=PTPLAD1 PE=2 SV=1
Length = 364
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K YLF YN +Q G WI + +L +S TF + ++++ Q A +E ++ A
Sbjct: 149 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 208
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+G+ S V +Q GR + + ++Q+ +F F W IE+
Sbjct: 209 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEI 258
>sp|Q9N1R5|HACD1_SHEEP Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 1 OS=Ovis aries GN=PTPLA PE=2 SV=1
Length = 288
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 15 YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
YN AGW+V ++ + + G + S + + QT A LE+VH +GI+P+ V
Sbjct: 79 YNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 138
Query: 75 WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+ +Q R + I +Q+ S+ + +AW + E+
Sbjct: 139 LVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEI 180
>sp|Q9QY80|HACD1_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 1 OS=Mus musculus GN=Ptpla PE=2 SV=1
Length = 281
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 15 YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
YN AGW+V ++ + + G + S + + QT A LEVVH +GI+P+ V
Sbjct: 72 YNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIVPTSV 131
Query: 75 WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+ +Q R + I +Q+ S+ + ++W + E+
Sbjct: 132 LVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEI 173
>sp|A7YY55|HACD3_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 3 OS=Bos taurus GN=PTPLAD1 PE=2 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K YLF YN +Q G WI + +L +S TF + ++++ Q A +E ++ A
Sbjct: 147 KGYLFMYNLVQFLGFSWIFVNMTVRFFILGKESFYDTFHTVADMMYFCQMLAAVESINAA 206
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+G+ S V Q GR + + ++Q+ +F F W +E+
Sbjct: 207 IGVTKSPVVPSLFQLLGRNFILFIIFGTMEEMQNKAVVFFVFYIWSTVEI 256
>sp|Q4W1W1|HACD1_CANFA Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 1 OS=Canis familiaris GN=PTPLA PE=2 SV=1
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 15 YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
YN AGW+V ++ + + G + S + + QT A LE+VH +GI+P+ V
Sbjct: 40 YNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 99
Query: 75 WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+ +Q R + I +Q+ S+ + +AW + E+
Sbjct: 100 IVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI 141
>sp|B0YJ81|HACD1_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 1 OS=Homo sapiens GN=PTPLA PE=1 SV=1
Length = 288
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 15 YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
Y+ AGW+V ++ + + G + S + + QT A LE+VH +GI+P+ V
Sbjct: 79 YDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSV 138
Query: 75 WLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+ +Q R + I +Q+ S+ + +AW + E+
Sbjct: 139 IVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI 180
>sp|Q5ZM57|HACD_CHICK Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase OS=Gallus gallus GN=PTPLAD1 PE=2 SV=1
Length = 362
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
K YL YN +Q G WI + +L S TF + ++++ QT A +E+++
Sbjct: 147 KGYLIMYNLVQFLGFSWIFVNMTVRLFILGKDSFYDTFHTIADMMYFCQTLALMEILNSL 206
Query: 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
+G++ S + +Q GR V + ++Q +F F W +IE+
Sbjct: 207 IGLVRSPLIPAVIQVFGRNFILFVVLGSLEEMQSKAVVFFLFYFWSIIEL 256
>sp|A2AKM2|HACD4_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 4 OS=Mus musculus GN=Ptplad2 PE=2 SV=2
Length = 232
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 5 RQPIKLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEV 62
R +YLF Y +Q G WI+A + S+A TF + G ++ + Q+ + LE+
Sbjct: 13 RYRKNVYLFIYYLIQFCGHSWILANMTVRFFSFGKDSMADTFYAIGLVMRVCQSISLLEL 72
Query: 63 VHGAVGILPSGVWLPFMQWCGRT--LFFLVTACEIVQVQDHPSLFITFLAWCLIE-VHYV 119
+H +GI + ++ F+Q R LF ++T+ E +VQ+ + + F+ W L++ V Y
Sbjct: 73 LHIYIGIESNQLFPRFLQLTERVIILFGVITSQE--EVQEKCVVCVLFILWNLLDMVRYT 130
Query: 120 HSTIS 124
+S +S
Sbjct: 131 YSMLS 135
>sp|Q5VWC8|HACD4_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 4 OS=Homo sapiens GN=PTPLAD2 PE=1 SV=1
Length = 232
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 11 YLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
YLF Y +Q G WI + S+ TF + G ++ + Q+ + LE++H VG
Sbjct: 19 YLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLCQSVSLLELLHIYVG 78
Query: 69 ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIE-VHYVHSTIS 124
I + + F+Q R + V +VQ+ + + F+ W L++ V Y +S +S
Sbjct: 79 IESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFVFWNLLDMVRYTYSMLS 135
>sp|O17040|HACD_CAEEL Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase hpo-8 OS=Caenorhabditis elegans GN=hpo-8
PE=3 SV=2
Length = 218
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 8 IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
++ YL YN LQ GW + + L + + + S + I QTAA LEV+H V
Sbjct: 3 VQTYLVAYNVLQILGWSAILVKTVLGLANGLTWPQLYESVEFELKIFQTAAILEVIHAIV 62
Query: 68 GILPSGVWLPFMQWCGRTLF 87
G++ S V MQ R +
Sbjct: 63 GLVRSPVGTTAMQVTSRVVL 82
>sp|Q5ZEJ0|PAS2B_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase PASTICCINO 2B OS=Oryza sativa subsp.
japonica GN=PAS2B PE=2 SV=1
Length = 221
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 9 KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
+LYL YN GW ++ ++ LL + A +A+ + QTAAFLE++HG VG
Sbjct: 10 RLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEA-VYAAVERPLQFAQTAAFLEILHGLVG 68
Query: 69 ILPSGV 74
++ S V
Sbjct: 69 LVRSPV 74
>sp|Q7XSZ4|PAS2A_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase PASTICCINO 2A OS=Oryza sativa subsp.
japonica GN=PAS2A PE=2 SV=2
Length = 221
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 9 KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
+LYL YN GW ++ ++ LL + A +A+ + QTAAFLE++HG VG
Sbjct: 10 RLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEA-VYAAVERPLQFAQTAAFLEILHGLVG 68
Query: 69 ILPSGV 74
++ S V
Sbjct: 69 LVRSPV 74
>sp|Q8VZB2|PAS2_ARATH Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2
PE=1 SV=1
Length = 221
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 9 KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
++YL YN + AGW +++ ++ L T + + + + + QTAA LE++HG VG
Sbjct: 10 RVYLTLYNWIVFAGWAQVLYLAITTLKET-GYENVYDAIEKPLQLAQTAAVLEILHGLVG 68
Query: 69 ILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV 116
++ S V Q R +V+ H + ++W + E+
Sbjct: 69 LVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEI 116
>sp|Q0P5C7|HACD4_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]
dehydratase 4 OS=Bos taurus GN=PTPLAD2 PE=2 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 11 YLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
YLF Y +Q G WI + S+ TF + G ++ + Q+ + LE++H VG
Sbjct: 19 YLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMQLCQSISLLELLHIYVG 78
Query: 69 ILPSGVWLPFMQWCGR--TLFFLVTACEIVQVQDHPSLFITFLAWCLIE-VHYVHSTIS 124
I + + +Q R LF ++T+ E +VQ+ + + F+ L++ V Y +S +S
Sbjct: 79 IESNHLLPRILQLTERIIVLFMVITSQE--EVQEKYVVCVLFIFRNLLDMVRYTYSMLS 135
>sp|Q6LMF5|FTSW_PHOPR Lipid II flippase FtsW OS=Photobacterium profundum GN=ftsW PE=3
SV=1
Length = 411
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 35 LSTKSIAGTFASAGEIIWI-LQTAAFLEVVHGAVGILPS-GVWLPFMQWCGRTLFFLVTA 92
L + + G F + G W QT L V A+G++P+ G+ LP + + G +LF + TA
Sbjct: 315 LQSGQLFGGFLACGFSFWFAFQT---LVNVGAAIGMVPTKGLTLPLISYGGSSLFIMATA 371
Query: 93 CEIVQVQDH 101
I+ DH
Sbjct: 372 VGILLRIDH 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,757,218
Number of Sequences: 539616
Number of extensions: 2537088
Number of successful extensions: 6258
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6234
Number of HSP's gapped (non-prelim): 29
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)