Query 029733
Match_columns 189
No_of_seqs 102 out of 386
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 4.7E-43 1E-47 298.6 8.4 165 3-185 4-169 (221)
2 KOG3187 Protein tyrosine phosp 100.0 2.6E-36 5.6E-41 256.9 10.6 165 3-185 4-169 (223)
3 COG5198 Ptpl Protein tyrosine 100.0 3.3E-29 7.1E-34 207.0 9.4 140 6-155 4-144 (209)
4 PF04387 PTPLA: Protein tyrosi 100.0 2.1E-30 4.6E-35 211.8 1.8 113 55-185 1-114 (164)
5 PF14333 DUF4389: Domain of un 58.6 60 0.0013 23.5 6.7 50 10-59 14-64 (80)
6 PF01151 ELO: GNS1/SUR4 family 33.9 2.1E+02 0.0046 24.5 7.4 121 2-127 28-169 (250)
7 PTZ00251 fatty acid elongase; 25.4 4.8E+02 0.01 23.1 8.7 123 2-127 51-189 (272)
8 PF10825 DUF2752: Protein of u 25.1 30 0.00064 23.1 0.5 9 160-168 10-18 (52)
9 PF12156 ATPase-cat_bd: Putati 20.8 25 0.00054 25.9 -0.7 20 159-178 26-45 (88)
10 TIGR00597 rad10 DNA repair pro 19.0 19 0.00041 28.2 -1.7 15 105-119 96-111 (112)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=4.7e-43 Score=298.57 Aligned_cols=165 Identities=24% Similarity=0.349 Sum_probs=149.5
Q ss_pred CCCCccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhc
Q 029733 3 HQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWC 82 (189)
Q Consensus 3 ~~~~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~ 82 (189)
+.++++|.||++||++|++||+++|++++.++..+|+ +++|+++++.++++|++|++||+|+++|+||||+.+|++||+
T Consensus 4 ~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~ 82 (221)
T PLN02838 4 FGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIG 82 (221)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHH
Confidence 3457899999999999999999999999999988773 568999999999999999999999999999999999999999
Q ss_pred cceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCCcccccc
Q 029733 83 GRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQC 161 (189)
Q Consensus 83 sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~~~~~~~ 161 (189)
||++++|+|++..|++++++.++.|++|||++|+ |||||+++++. |. .|.++.|+| |..++.-.|-
T Consensus 83 sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~--~~---~p~~L~WLR--Yt~FivLYPl------ 149 (221)
T PLN02838 83 SRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAF--GF---APSWLLWLR--YSTFLLLYPT------ 149 (221)
T ss_pred HHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhc--CC---CcHHHHHHH--Hhccceecch------
Confidence 9999999999999999999999999999999999 99999998652 21 499999999 9999999998
Q ss_pred CCCCeeeeeeeehhhhhhhHhhhC
Q 029733 162 CPGCICDVSICLDQTLLTYAQATG 185 (189)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~ 185 (189)
|..+|.=+-+.-|||+++++
T Consensus 150 ----Gi~~E~~~i~~al~~~~~~~ 169 (221)
T PLN02838 150 ----GITSEVGLIYIALPYMKASE 169 (221)
T ss_pred ----HHHHHHHHHHHhchhhhccc
Confidence 77666666677788888765
No 2
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=256.94 Aligned_cols=165 Identities=23% Similarity=0.322 Sum_probs=147.8
Q ss_pred CCCCccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhc
Q 029733 3 HQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWC 82 (189)
Q Consensus 3 ~~~~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~ 82 (189)
+.+.+++.||++||.+|++||++++..+...+..+|+.+++||++++.++++|++|++|++|+.+|+|||++++|++||.
T Consensus 4 ~l~~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~ 83 (223)
T KOG3187|consen 4 ELGMLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVS 83 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeec
Confidence 45678999999999999999999999999999999988989999999999999999999999999999999999999999
Q ss_pred cceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCCcccccc
Q 029733 83 GRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQC 161 (189)
Q Consensus 83 sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~~~~~~~ 161 (189)
||++++|++++..|+++.++++..++.+|+++|| |||||++++++. .|+++.|+| |--+++--|-
T Consensus 84 sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~------~p~~l~wlR--Yt~Fi~LYP~------ 149 (223)
T KOG3187|consen 84 SRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV------LPKLLTWLR--YTLFILLYPI------ 149 (223)
T ss_pred ccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC------CchhhhHhh--hhhheeeecc------
Confidence 9999999999999999999999999999999999 999999999752 799999999 9999999988
Q ss_pred CCCCeeeeeeeehhhhhhhHhhhC
Q 029733 162 CPGCICDVSICLDQTLLTYAQATG 185 (189)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~ 185 (189)
|+.+|-=.=.-.+++++.+|
T Consensus 150 ----Gi~~E~l~i~~al~~~~~~~ 169 (223)
T KOG3187|consen 150 ----GITSELLTLYAALPAAGETE 169 (223)
T ss_pred ----eehhhHHHHHHHHHHhcccc
Confidence 55444322333456665544
No 3
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=206.97 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=126.0
Q ss_pred CccchhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHhhhhcccccccccchhhhhccce
Q 029733 6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT 85 (189)
Q Consensus 6 ~l~~~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHa~lGLVrS~v~tT~~QV~sRl 85 (189)
.++-.||-+||.+++.+|.+++.+....+...++++ +|++......++|++|++|+.|+.+|.|+|+++||.|||.||+
T Consensus 4 ~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl 82 (209)
T COG5198 4 ALPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRL 82 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Confidence 455689999999999999999998888887788877 6888999999999999999999999999999999999999999
Q ss_pred eeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccCCCCchhhhhhhhhhheeeccCC
Q 029733 86 LFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPP 155 (189)
Q Consensus 86 ~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt~~p~i~~~~r~~~~~~~~~~~~ 155 (189)
+++|||+++.-.+-+++.+..+.+|||++|+ ||.||+|++ +| .|.+++++| |-.+..-.|-
T Consensus 83 ~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~l---ng----~p~~l~~lR--YNlFlilyPi 144 (209)
T COG5198 83 FIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRL---NG----IPNTLRVLR--YNLFLILYPI 144 (209)
T ss_pred HHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHh---cC----Cchhhhhhh--hhhhhhhcch
Confidence 9999999776666569999999999999999 999999999 44 599999999 7776666665
No 4
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=99.96 E-value=2.1e-30 Score=211.75 Aligned_cols=113 Identities=27% Similarity=0.364 Sum_probs=105.0
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhccceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhcccCccC
Q 029733 55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRSTWGNVT 133 (189)
Q Consensus 55 Qt~AvLEIlHa~lGLVrS~v~tT~~QV~sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~~~g~lt 133 (189)
|++|++||+|+++|+||||+.+|++||+||++++|++++..|+++.++++.+|++|||++|+ |||||++++++
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~------ 74 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLG------ 74 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcC------
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999953
Q ss_pred CCCchhhhhhhhhhheeeccCCccccccCCCCeeeeeeeehhhhhhhHhhhC
Q 029733 134 PKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATG 185 (189)
Q Consensus 134 ~~p~i~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (189)
-.|.++.|+| |..++.--|- |..+|.-+-+.-+++.++++
T Consensus 75 ~~p~~L~WLR--Ys~FivLYPl----------G~~~E~~~~~~al~~~~~~~ 114 (164)
T PF04387_consen 75 IVPYWLTWLR--YSAFIVLYPL----------GILSELLLIYRALPYIKETK 114 (164)
T ss_pred CCchHHHHHH--HhhHhhccch----------HHHHHHHHHHHhCcccccCC
Confidence 4599999999 9999999999 78888877788888877664
No 5
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=58.58 E-value=60 Score=23.47 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=37.9
Q ss_pred hhHhHHhHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHH-HHHHH
Q 029733 10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWIL-QTAAF 59 (189)
Q Consensus 10 ~YL~lYN~vq~~gWs~IL~~~l~~l~~~g~~~~~y~~v~~~l~~~-Qt~Av 59 (189)
.+.++++.++++.|..+++..+..++++...+..++-.....++. |..+.
T Consensus 14 ~~~ivl~~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l~~y~~rv~~y 64 (80)
T PF14333_consen 14 PFAIVLSLASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGLSRYIYRVLAY 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999998888777777777666555544 44443
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=33.90 E-value=2.1e+02 Score=24.47 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCCCCc-cchhHhHHhHHHHHHHHHHHHHHHHHHHh----cC-----------Cccchh-hhhhHHHHHHHHHHHHHHhh
Q 029733 2 AHQRQP-IKLYLFGYNSLQAAGWIVAIFMLLSNLLS----TK-----------SIAGTF-ASAGEIIWILQTAAFLEVVH 64 (189)
Q Consensus 2 ~~~~~l-~~~YL~lYN~vq~~gWs~IL~~~l~~l~~----~g-----------~~~~~y-~~v~~~l~~~Qt~AvLEIlH 64 (189)
++..+. -|.-+.+||++|.+.=++.+..++..... +| +.++.. +.++...-++=..=+.|.+=
T Consensus 28 ~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllD 107 (250)
T PF01151_consen 28 KNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLD 107 (250)
T ss_pred hhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 344433 35689999999988777777666633211 11 111111 11222222223334667666
Q ss_pred hhcccccccccchhhhhccceeee---eeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhc
Q 029733 65 GAVGILPSGVWLPFMQWCGRTLFF---LVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRS 127 (189)
Q Consensus 65 a~lGLVrS~v~tT~~QV~sRl~Iv---w~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~ 127 (189)
..+=+.|-+ -.+++++.==..++ |......|. .......+.=+.+-+ -|+||..+..+
T Consensus 108 TvflvLrkK-~lsfLHvYHH~~~~~~~w~~~~~~~~----~~~~~~~~~N~~VH~iMY~YY~l~a~g 169 (250)
T PF01151_consen 108 TVFLVLRKK-QLSFLHVYHHASTLLYCWISYKYGPG----GQIWFIAALNSFVHVIMYSYYFLSALG 169 (250)
T ss_pred HHHHHHhCC-CcchhHHhhhhhhhhhhhheeeeccc----cchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666566666 77788887444444 443333222 122223344567888 99999999765
No 7
>PTZ00251 fatty acid elongase; Provisional
Probab=25.44 E-value=4.8e+02 Score=23.10 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=65.5
Q ss_pred CCCCCcc--chhHhHHhHHHHHHHHHHHHHHHH----HHHhcCC-------ccch-h-hhhhHHHHHHHHHHHHHHhhhh
Q 029733 2 AHQRQPI--KLYLFGYNSLQAAGWIVAIFMLLS----NLLSTKS-------IAGT-F-ASAGEIIWILQTAAFLEVVHGA 66 (189)
Q Consensus 2 ~~~~~l~--~~YL~lYN~vq~~gWs~IL~~~l~----~l~~~g~-------~~~~-y-~~v~~~l~~~Qt~AvLEIlHa~ 66 (189)
++..|.. |.-+.+||++|.+.=++.+...+. .....|- ..+- + ...+...-++=..=+.|.+=..
T Consensus 51 ~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTv 130 (272)
T PTZ00251 51 HGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTF 130 (272)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4566766 889999999999887777766652 2222220 0111 1 2233333333333466666555
Q ss_pred cccccccccchhhhhccceeeeeeEeecccccccchhhHHHHHHhhhhhh-hhHHHHHHhhc
Q 029733 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEV-HYVHSTISYRS 127 (189)
Q Consensus 67 lGLVrS~v~tT~~QV~sRl~Ivw~V~~~~p~~~~~~~v~~ll~AWsitEI-RY~yY~~~ll~ 127 (189)
+=+.|-+ -.++++|.==..+++....... +...........=+.+-+ =|+||.++..+
T Consensus 131 F~VLRKK-qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g 189 (272)
T PTZ00251 131 FLIMGGK-KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFALSEAG 189 (272)
T ss_pred hhhhcCC-CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5455544 5556666544333322222221 112222222344466888 99999999864
No 8
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=25.14 E-value=30 Score=23.15 Aligned_cols=9 Identities=44% Similarity=0.991 Sum_probs=6.5
Q ss_pred ccCCCCeee
Q 029733 160 QCCPGCICD 168 (189)
Q Consensus 160 ~~~~~~~~~ 168 (189)
+-|||||=.
T Consensus 10 ~~CPgCG~t 18 (52)
T PF10825_consen 10 IPCPGCGMT 18 (52)
T ss_pred CCCCCCcHH
Confidence 349999853
No 9
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=20.76 E-value=25 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=11.9
Q ss_pred cccCCCCeeeeeeeehhhhh
Q 029733 159 LQCCPGCICDVSICLDQTLL 178 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ 178 (189)
.-||+||-=+-++=.+.-|-
T Consensus 26 ~FCC~GC~~V~~~i~~~gL~ 45 (88)
T PF12156_consen 26 PFCCPGCQAVYQLIHENGLE 45 (88)
T ss_pred ccccHHHHHHHHHHHHcchH
Confidence 67999996554443333333
No 10
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=18.98 E-value=19 Score=28.23 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhh-hhH
Q 029733 105 FITFLAWCLIEV-HYV 119 (189)
Q Consensus 105 ~~ll~AWsitEI-RY~ 119 (189)
.++++|||.-|. ||-
T Consensus 96 ~TLilaws~eEaa~Yl 111 (112)
T TIGR00597 96 CTLILAWSFEEAARYL 111 (112)
T ss_pred cEEEEECCHHHHHHhh
Confidence 568899999999 993
Done!