Query 029733
Match_columns 189
No_of_seqs 102 out of 386
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wqb_A Aptotoxin VII; spider'S 33.9 15 0.00053 21.5 1.1 16 160-175 17-32 (32)
2 3e4h_A VARV peptide F; cycloti 22.0 33 0.0011 20.0 1.1 15 163-177 13-27 (29)
3 2ki9_A Cannabinoid receptor 2; 21.5 11 0.00038 21.3 -1.1 14 146-159 12-25 (33)
4 2lq4_p Lysophosphatidic acid r 15.9 36 0.0012 23.6 0.3 12 164-175 33-44 (80)
5 1mct_I Trypsin inhibitor A; co 15.5 55 0.0019 18.9 1.0 13 160-172 15-27 (28)
6 2fqa_A Violacin 1, violacin A; 15.3 47 0.0016 19.1 0.6 10 163-172 17-26 (27)
7 2a1i_A DNA excision repair pro 14.1 17 0.00057 28.6 -2.0 16 105-120 113-129 (146)
8 1e8p_A Endoglucanase, dockerin 13.0 61 0.0021 20.8 0.8 18 152-169 3-21 (46)
9 2jwo_A RAG-2, V(D)J recombinat 12.4 59 0.002 23.1 0.6 12 159-170 12-23 (82)
10 2lam_A Cyclotide CTER M; insec 11.9 77 0.0027 18.4 0.9 11 163-173 17-27 (29)
No 1
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=33.92 E-value=15 Score=21.47 Aligned_cols=16 Identities=50% Similarity=1.045 Sum_probs=13.6
Q ss_pred ccCCCCeeeeeeeehh
Q 029733 160 QCCPGCICDVSICLDQ 175 (189)
Q Consensus 160 ~~~~~~~~~~~~~~~~ 175 (189)
-||.|=.||.|.|-.|
T Consensus 17 pccsglkcdgsechpq 32 (32)
T 1wqb_A 17 PCCSGLKCDGSECHPQ 32 (32)
T ss_dssp CBCTTCEESSSBEECC
T ss_pred ccccCccccCcccCCC
Confidence 3899999999999754
No 2
>3e4h_A VARV peptide F; cyclotide, circular proteins, cystine knot, cyclization, plant protein, knottin, plant defense; 1.80A {Viola arvensis} SCOP: g.3.3.1 PDB: 2jwm_A 1nb1_A 1znu_A 2kuk_A 2jue_A* 1n1u_A 1orx_A
Probab=21.96 E-value=33 Score=20.02 Aligned_cols=15 Identities=27% Similarity=0.906 Sum_probs=12.3
Q ss_pred CCCeeeeeeeehhhh
Q 029733 163 PGCICDVSICLDQTL 177 (189)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (189)
|||.|...+|-...|
T Consensus 13 ~GCsC~~~vC~~NsL 27 (29)
T 3e4h_A 13 AGCSCSWPVCTRNGV 27 (29)
T ss_dssp TTCEEETTEEEBTTB
T ss_pred CCCEeCCCeeeeccc
Confidence 899999999976543
No 3
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=21.52 E-value=11 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=10.5
Q ss_pred hhheeeccCCcccc
Q 029733 146 YLCKFLCWPPFQLL 159 (189)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (189)
-..+++||-||+..
T Consensus 12 v~~F~icW~P~~i~ 25 (33)
T 2ki9_A 12 LAVLLICWFPVLAL 25 (33)
T ss_dssp HHHHTTTSSHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 35678999998754
No 4
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=15.90 E-value=36 Score=23.57 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=9.9
Q ss_pred CCeeeeeeeehh
Q 029733 164 GCICDVSICLDQ 175 (189)
Q Consensus 164 ~~~~~~~~~~~~ 175 (189)
.||||.+.|.+-
T Consensus 33 ncicdiencsnm 44 (80)
T 2lq4_p 33 NCICDIENCSNM 44 (80)
T ss_dssp CSSCCCCCCCSS
T ss_pred hhhccccccccc
Confidence 589999999753
No 5
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=15.52 E-value=55 Score=18.93 Aligned_cols=13 Identities=38% Similarity=1.142 Sum_probs=10.0
Q ss_pred ccCCCCeeeeeee
Q 029733 160 QCCPGCICDVSIC 172 (189)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (189)
.|.++|+|....|
T Consensus 15 DCl~~C~C~~G~C 27 (28)
T 1mct_I 15 DCMAKCICVAGHC 27 (28)
T ss_dssp GSSTTCCEETTEE
T ss_pred ccccCCEeccccc
Confidence 5788999977665
No 6
>2fqa_A Violacin 1, violacin A; cystine knot, beta sheet, beta turns, plant protein; NMR {Viola odorata}
Probab=15.26 E-value=47 Score=19.07 Aligned_cols=10 Identities=40% Similarity=1.404 Sum_probs=8.7
Q ss_pred CCCeeeeeee
Q 029733 163 PGCICDVSIC 172 (189)
Q Consensus 163 ~~~~~~~~~~ 172 (189)
|||.|...+|
T Consensus 17 ~GCsC~~~vC 26 (27)
T 2fqa_A 17 PRCSCSYPVC 26 (27)
T ss_dssp TTEEEETTEE
T ss_pred CCceeCCccc
Confidence 6999988887
No 7
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=14.06 E-value=17 Score=28.64 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.9
Q ss_pred HHHHHHhhhhhh-hhHH
Q 029733 105 FITFLAWCLIEV-HYVH 120 (189)
Q Consensus 105 ~~ll~AWsitEI-RY~y 120 (189)
+++++|||.-|. ||-=
T Consensus 113 ~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE 129 (146)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHH
Confidence 568899999999 9964
No 8
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=12.96 E-value=61 Score=20.80 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=14.0
Q ss_pred ccCCccccccCCCCe-eee
Q 029733 152 CWPPFQLLQCCPGCI-CDV 169 (189)
Q Consensus 152 ~~~~~~~~~~~~~~~-~~~ 169 (189)
||.--+|..||.+|- |+|
T Consensus 3 C~~~~lGY~CC~~~~~c~V 21 (46)
T 1e8p_A 3 CWAQSQGYNCCNNPSSTKV 21 (46)
T ss_dssp CGGGGTTCEECSCGGGSCE
T ss_pred cchhhcCcCccCCCCCceE
Confidence 788889999999972 443
No 9
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=12.43 E-value=59 Score=23.15 Aligned_cols=12 Identities=42% Similarity=1.351 Sum_probs=9.6
Q ss_pred cccCCCCeeeee
Q 029733 159 LQCCPGCICDVS 170 (189)
Q Consensus 159 ~~~~~~~~~~~~ 170 (189)
.+||++|..|+.
T Consensus 12 I~Cc~~c~~dvn 23 (82)
T 2jwo_A 12 ITCCPTCDVDIN 23 (82)
T ss_dssp SCSSTTCCCCTT
T ss_pred EEecCccccCcc
Confidence 479999988864
No 10
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=11.94 E-value=77 Score=18.43 Aligned_cols=11 Identities=45% Similarity=1.377 Sum_probs=9.5
Q ss_pred CCCeeeeeeee
Q 029733 163 PGCICDVSICL 173 (189)
Q Consensus 163 ~~~~~~~~~~~ 173 (189)
|||.|...+|-
T Consensus 17 ~GCsC~~~vC~ 27 (29)
T 2lam_A 17 PDCSCSWPICM 27 (29)
T ss_dssp TTCEEETTEEE
T ss_pred CCcccCCCeEc
Confidence 69999998884
Done!