Query 029733
Match_columns 189
No_of_seqs 102 out of 386
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029733.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029733hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v89a1 g.50.1.2 (A:1414-1487) 25.2 8.5 0.00062 25.2 0.4 12 159-170 4-15 (74)
2 d1rmka_ g.3.6.1 (A:) Conotoxin 24.4 9.8 0.00072 20.8 0.5 18 155-172 12-30 (31)
3 d1n1ua_ g.3.3.1 (A:) Kalata B1 20.0 16 0.0012 19.7 0.9 15 162-176 12-26 (29)
4 d1x61a1 g.39.1.3 (A:8-34) Thyr 16.9 16 0.0012 19.2 0.4 8 162-169 1-8 (27)
5 d2a1ia1 c.52.1.20 (A:99-227) D 12.9 8.8 0.00064 27.8 -2.0 15 105-119 96-111 (129)
6 d1qjla_ g.46.1.1 (A:) Metallot 9.6 47 0.0034 17.5 0.8 16 157-172 11-26 (28)
7 d1z60a1 g.49.1.2 (A:328-386) T 8.5 49 0.0036 20.6 0.7 9 158-166 51-59 (59)
8 d1dl0a_ g.3.6.2 (A:) J-atracot 7.8 65 0.0048 17.8 1.0 10 160-169 15-24 (37)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 7.7 1.1E+02 0.0079 15.9 1.8 15 102-116 6-20 (27)
10 d1nbja_ g.3.3.2 (A:) Cycloviol 7.1 73 0.0053 17.0 0.9 12 163-174 16-27 (30)
No 1
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.24 E-value=8.5 Score=25.23 Aligned_cols=12 Identities=42% Similarity=1.351 Sum_probs=9.8
Q ss_pred cccCCCCeeeee
Q 029733 159 LQCCPGCICDVS 170 (189)
Q Consensus 159 ~~~~~~~~~~~~ 170 (189)
..||+||..|..
T Consensus 4 i~Cc~~C~vd~N 15 (74)
T d2v89a1 4 ITCCPTCDVDIN 15 (74)
T ss_dssp SCCSTTCCCCTT
T ss_pred eEecCCcccCcc
Confidence 369999998865
No 2
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=24.42 E-value=9.8 Score=20.82 Aligned_cols=18 Identities=44% Similarity=1.187 Sum_probs=12.6
Q ss_pred Ccccc-ccCCCCeeeeeee
Q 029733 155 PFQLL-QCCPGCICDVSIC 172 (189)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~ 172 (189)
|--|| -||||=+|..-.|
T Consensus 12 pi~gfiyccpglicgpfvc 30 (31)
T d1rmka_ 12 PILGFVYCCPGLICGPFVC 30 (31)
T ss_dssp CTTCCCEESTTCCBCSSSB
T ss_pred eeeeeeeeCCCccccceee
Confidence 34444 4999999987666
No 3
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=20.00 E-value=16 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=12.2
Q ss_pred CCCCeeeeeeeehhh
Q 029733 162 CPGCICDVSICLDQT 176 (189)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (189)
-|||.|.-.||-...
T Consensus 12 tpgctcswpictrn~ 26 (29)
T d1n1ua_ 12 TPGATCSWPVCTRNG 26 (29)
T ss_dssp STTCEEETTEEEETT
T ss_pred CCCceeecceecccc
Confidence 489999999997554
No 4
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.88 E-value=16 Score=19.24 Aligned_cols=8 Identities=63% Similarity=1.190 Sum_probs=6.4
Q ss_pred CCCCeeee
Q 029733 162 CPGCICDV 169 (189)
Q Consensus 162 ~~~~~~~~ 169 (189)
|.||+-|+
T Consensus 1 cggcgedv 8 (27)
T d1x61a1 1 CGGCGEDV 8 (27)
T ss_dssp CSSSCSCC
T ss_pred CCCccccc
Confidence 78998775
No 5
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.91 E-value=8.8 Score=27.80 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhh-hhH
Q 029733 105 FITFLAWCLIEV-HYV 119 (189)
Q Consensus 105 ~~ll~AWsitEI-RY~ 119 (189)
.++++|||.-|. ||-
T Consensus 96 ~TLilaws~eEaa~Yl 111 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYL 111 (129)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHH
Confidence 568899999999 994
No 6
>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}
Probab=9.55 E-value=47 Score=17.47 Aligned_cols=16 Identities=31% Similarity=0.858 Sum_probs=10.7
Q ss_pred cccccCCCCeeeeeee
Q 029733 157 QLLQCCPGCICDVSIC 172 (189)
Q Consensus 157 ~~~~~~~~~~~~~~~~ 172 (189)
||-.|-.||.|....|
T Consensus 11 ngckcgsgcsctegnc 26 (28)
T d1qjla_ 11 NGCKCGSGCSCTEGNC 26 (28)
T ss_dssp TTCCTTSCCCCBTTBC
T ss_pred cCcccCCCccccCCcc
Confidence 5666777777766555
No 7
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.54 E-value=49 Score=20.62 Aligned_cols=9 Identities=67% Similarity=1.641 Sum_probs=5.7
Q ss_pred ccccCCCCe
Q 029733 158 LLQCCPGCI 166 (189)
Q Consensus 158 ~~~~~~~~~ 166 (189)
-+-.||||+
T Consensus 51 ~lh~CpgCl 59 (59)
T d1z60a1 51 SLHSCPGCI 59 (59)
T ss_dssp TSCSSSTTC
T ss_pred hhcCCCCCC
Confidence 455677774
No 8
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=7.78 E-value=65 Score=17.84 Aligned_cols=10 Identities=50% Similarity=1.557 Sum_probs=6.1
Q ss_pred ccCCCCeeee
Q 029733 160 QCCPGCICDV 169 (189)
Q Consensus 160 ~~~~~~~~~~ 169 (189)
-||||=.|..
T Consensus 15 pccpgtscka 24 (37)
T d1dl0a_ 15 PCCPGTSCKA 24 (37)
T ss_dssp CCCTTEEEEE
T ss_pred CCCCCCceec
Confidence 3677766653
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.66 E-value=1.1e+02 Score=15.87 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=10.7
Q ss_pred hhhHHHHHHhhhhhh
Q 029733 102 PSLFITFLAWCLIEV 116 (189)
Q Consensus 102 ~~v~~ll~AWsitEI 116 (189)
|...+.++.||++-+
T Consensus 6 wv~llvvftwsiamv 20 (27)
T d2e74h1 6 WVALLVVFTWSIAMV 20 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeE
Confidence 345667889998765
No 10
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=7.14 E-value=73 Score=17.01 Aligned_cols=12 Identities=33% Similarity=1.121 Sum_probs=9.7
Q ss_pred CCCeeeeeeeeh
Q 029733 163 PGCICDVSICLD 174 (189)
Q Consensus 163 ~~~~~~~~~~~~ 174 (189)
-||.|....|-+
T Consensus 16 lgc~c~~kvcyn 27 (30)
T d1nbja_ 16 LGCSCSNRVCYN 27 (30)
T ss_dssp TTCEEETTEEES
T ss_pred ecccccCceeec
Confidence 389999888865
Done!