Query 029734
Match_columns 189
No_of_seqs 168 out of 658
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_C Fibrinogen gamma chain; 35.0 60 0.0021 29.1 5.7 33 107-139 25-57 (411)
2 2l9u_A Receptor tyrosine-prote 30.2 23 0.00079 21.3 1.4 22 1-22 8-29 (40)
3 4hkr_A Calcium release-activat 24.6 2.5E+02 0.0086 23.0 7.2 22 99-120 165-186 (214)
4 1m1j_C Fibrinogen gamma chain; 22.0 1.8E+02 0.006 26.0 6.3 29 107-135 25-53 (409)
5 3at7_A Alginate-binding flagel 19.0 3.2E+02 0.011 22.7 7.1 40 96-136 194-233 (283)
6 1iie_A Protein (HLA-DR antigen 17.2 64 0.0022 22.3 1.8 14 49-62 47-60 (75)
7 3caz_A BAR protein; thermo-aci 16.1 4E+02 0.014 21.9 6.7 26 125-150 172-197 (294)
8 3ghg_B Fibrinogen beta chain; 15.9 3.4E+02 0.012 24.6 6.8 31 107-137 82-112 (461)
9 3h6p_C ESAT-6-like protein ESX 12.4 3.2E+02 0.011 18.1 4.5 57 111-167 18-78 (96)
10 1yfs_A Alanyl-tRNA synthetase; 11.7 6.3E+02 0.022 22.9 7.3 21 92-112 285-305 (465)
No 1
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.00 E-value=60 Score=29.14 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=25.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhhHH
Q 029734 107 LRPFLLRHQARLDQILESVNGEMSQFVSDHQVE 139 (189)
Q Consensus 107 l~P~l~k~e~~ID~~l~~~~~~~~~~~~~~~~~ 139 (189)
|+-+|.|+|+.+|+-|+.+...+.++-..-...
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~ 57 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEV 57 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHH
Confidence 566899999999999999998887665554433
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=30.16 E-value=23 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=17.4
Q ss_pred CchhhhHHHHHHHhhhhhhHHH
Q 029734 1 MALSGEVGLRLLLCPIGSNIVV 22 (189)
Q Consensus 1 ~~~~~~~gl~lll~~~~~n~v~ 22 (189)
|+++..+||..+|.-+++.|+.
T Consensus 8 malt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEE
Confidence 5777888999888888877753
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=24.60 E-value=2.5e+02 Score=22.96 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=13.1
Q ss_pred hhHHHhhhhhhhhhhchHHHHH
Q 029734 99 AKYFYMSRLRPFLLRHQARLDQ 120 (189)
Q Consensus 99 A~~lY~~~l~P~l~k~e~~ID~ 120 (189)
|-..|++.+..-..++.+.|++
T Consensus 165 a~hFYrsL~~hk~e~~~~~i~e 186 (214)
T 4hkr_A 165 AIHFYRSLVSHKYEVTVSGIRE 186 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555555544
No 4
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.03 E-value=1.8e+02 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=21.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029734 107 LRPFLLRHQARLDQILESVNGEMSQFVSD 135 (189)
Q Consensus 107 l~P~l~k~e~~ID~~l~~~~~~~~~~~~~ 135 (189)
|+-+|.|+|..+|+-+..+...+.++-..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ 53 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNS 53 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 55678999999999998887666555443
No 5
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=19.00 E-value=3.2e+02 Score=22.68 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=27.0
Q ss_pred CcchhHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 029734 96 TNGAKYFYMSRLRPFLLRHQARLDQILESVNGEMSQFVSDH 136 (189)
Q Consensus 96 t~GA~~lY~~~l~P~l~k~e~~ID~~l~~~~~~~~~~~~~~ 136 (189)
..|+.-+|. .++|++.+..+.+++-++.....+.+.+..+
T Consensus 194 l~G~~~vy~-~L~~ll~~~d~~L~~~i~~~~~~~~~~l~~~ 233 (283)
T 3at7_A 194 FEGAKKIVD-LFRPLVVKDNRAFADKVDANFDTVFKTLAKY 233 (283)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHh
Confidence 467777887 5999998777766666655555555544444
No 6
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=17.20 E-value=64 Score=22.30 Aligned_cols=14 Identities=14% Similarity=0.646 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHH
Q 029734 49 EKQKWLVYWAVYGS 62 (189)
Q Consensus 49 ~~~~WL~YWivya~ 62 (189)
....|+.||.+|-+
T Consensus 47 ~FEsWM~~WLLFeM 60 (75)
T 1iie_A 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35789999998754
No 7
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=16.11 E-value=4e+02 Score=21.86 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 029734 125 VNGEMSQFVSDHQVEFRFVRTLFMKT 150 (189)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~k~ 150 (189)
+-..|.++...|-+-++-+.+++-..
T Consensus 172 iInkMnkll~n~~riineaasavwst 197 (294)
T 3caz_A 172 LIQKMETVWKKHVSIFAEAASAVWST 197 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666554444444443333
No 8
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=15.89 E-value=3.4e+02 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=23.8
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 029734 107 LRPFLLRHQARLDQILESVNGEMSQFVSDHQ 137 (189)
Q Consensus 107 l~P~l~k~e~~ID~~l~~~~~~~~~~~~~~~ 137 (189)
|+-+|.|+|+.+|+-|+.+...+.++-.+-.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts 112 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSS 112 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhH
Confidence 5667899999999999888887766644433
No 9
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=12.38 E-value=3.2e+02 Score=18.09 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=37.8
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 029734 111 LLRHQARLDQILESVNGEMSQFVSDHQ----VEFRFVRTLFMKTVALVNQTVKEIIHPVPT 167 (189)
Q Consensus 111 l~k~e~~ID~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 167 (189)
+.....+|+..++.++..+..+...++ ...+-........+....+.|.+.......
T Consensus 18 i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~~ 78 (96)
T 3h6p_C 18 MAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHES 78 (96)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888999998888887774 355556666667777777777776554433
No 10
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=11.70 E-value=6.3e+02 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.1
Q ss_pred hcCCCcchhHHHhhhhhhhhh
Q 029734 92 QLPSTNGAKYFYMSRLRPFLL 112 (189)
Q Consensus 92 ~~P~t~GA~~lY~~~l~P~l~ 112 (189)
++|+..|..|+-++++|.-+.
T Consensus 285 v~PsN~GrGYVLRRilRRavr 305 (465)
T 1yfs_A 285 VIPSNEGRGYVIRRILRRAMR 305 (465)
T ss_dssp CCCCSBHHHHHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHH
Confidence 578999999999999987765
Done!