Query 029734
Match_columns 189
No_of_seqs 168 out of 658
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 03:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029734.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029734hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iiea_ a.109.1.1 (A:) Class I 18.2 28 0.002 22.5 1.8 14 49-62 47-60 (75)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 17.2 29 0.0021 21.0 1.6 26 54-80 21-48 (53)
3 d2ce7a1 a.269.1.1 (A:411-603) 17.0 1.2E+02 0.0085 21.3 5.6 32 115-146 144-175 (193)
4 d2di4a1 a.269.1.1 (A:406-607) 16.0 1.3E+02 0.0092 21.2 5.6 33 114-146 142-174 (202)
5 d1riqa1 a.203.1.1 (A:237-457) 15.6 2.1E+02 0.015 21.1 7.3 32 81-112 35-68 (221)
6 d1wa8b1 a.25.3.1 (B:602-695) E 13.4 1.5E+02 0.011 18.3 6.6 27 111-137 17-43 (94)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 12.3 32 0.0023 17.7 0.7 14 27-40 9-22 (27)
8 d1nekd_ f.21.2.2 (D:) Succinat 10.9 37 0.0027 22.7 0.9 32 78-109 53-84 (113)
9 d1m56d_ f.23.8.1 (D:) Bacteria 8.9 1.8E+02 0.013 16.4 3.8 26 67-92 13-38 (42)
10 d1qled_ f.23.8.1 (D:) Bacteria 8.0 2E+02 0.014 16.2 3.8 27 67-93 14-40 (43)
No 1
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.21 E-value=28 Score=22.51 Aligned_cols=14 Identities=14% Similarity=0.646 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHH
Q 029734 49 EKQKWLVYWAVYGS 62 (189)
Q Consensus 49 ~~~~WL~YWivya~ 62 (189)
....|+.||.+|-+
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999998754
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.15 E-value=29 Score=20.97 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhchhhhH
Q 029734 54 LVYWAVYGSFSIAEMFADK--ILCWFPLY 80 (189)
Q Consensus 54 L~YWivya~~~~~E~~~d~--ll~wiP~Y 80 (189)
+.+|-.-|...++ .++|+ ++.|+|+|
T Consensus 21 ~~~~G~a~gl~lv-y~TDWklil~yvPyy 48 (53)
T d2fyuk1 21 ASLWGAVGAVGLV-WATDWRLILDWVPYI 48 (53)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHHTSSSSC
T ss_pred hhhhhhhhheeee-eeehHHHHHhhhhhh
Confidence 4556555555554 45664 67999987
No 3
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.99 E-value=1.2e+02 Score=21.33 Aligned_cols=32 Identities=3% Similarity=0.180 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 029734 115 QARLDQILESVNGEMSQFVSDHQVEFRFVRTL 146 (189)
Q Consensus 115 e~~ID~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (189)
+.++.++++.++++..++++.|+..+..+...
T Consensus 144 d~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~ 175 (193)
T d2ce7a1 144 DEEVKKIVTNCYERAKEIIRKYRKQLDNIVEI 175 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566788888999999999998877765443
No 4
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=16.00 E-value=1.3e+02 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 029734 114 HQARLDQILESVNGEMSQFVSDHQVEFRFVRTL 146 (189)
Q Consensus 114 ~e~~ID~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (189)
.+.++.+.++.++.+..++++.|+..+..+...
T Consensus 142 id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~ 174 (202)
T d2di4a1 142 IDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKK 174 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677788899999999999998877765443
No 5
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=15.64 E-value=2.1e+02 Score=21.13 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHH--HhcCCCcchhHHHhhhhhhhhh
Q 029734 81 HHVKFAFLVW--LQLPSTNGAKYFYMSRLRPFLL 112 (189)
Q Consensus 81 ~~~Kl~fllw--L~~P~t~GA~~lY~~~l~P~l~ 112 (189)
.|+|.+.++- =+.|+..|..|+-++++|.-+.
T Consensus 35 DH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r 68 (221)
T d1riqa1 35 DHLRAITFAISDGVIPSNEGRGYVIRRILRRAMR 68 (221)
T ss_dssp HHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCchHHHHHHHHHHH
Confidence 3455443322 3679999999999999998764
No 6
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.42 E-value=1.5e+02 Score=18.31 Aligned_cols=27 Identities=4% Similarity=0.212 Sum_probs=20.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhh
Q 029734 111 LLRHQARLDQILESVNGEMSQFVSDHQ 137 (189)
Q Consensus 111 l~k~e~~ID~~l~~~~~~~~~~~~~~~ 137 (189)
+.+...+|+..|+.++..+..+...++
T Consensus 17 i~~~~~~i~~~l~~L~~~~~~l~~~W~ 43 (94)
T d1wa8b1 17 IQGNVTSIHSLLDEGKQSLTKLAAAWG 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788888888888888877773
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.29 E-value=32 Score=17.71 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.0
Q ss_pred hhhhccccHHHHHH
Q 029734 27 CSVGTILPVYSTFK 40 (189)
Q Consensus 27 ~~iG~~yPaY~S~k 40 (189)
.+.|..|-||+.+|
T Consensus 9 tl~glf~aayqqyk 22 (27)
T d2e74g1 9 TLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 34677888887765
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=10.89 E-value=37 Score=22.67 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcchhHHHhhhhhh
Q 029734 78 PLYHHVKFAFLVWLQLPSTNGAKYFYMSRLRP 109 (189)
Q Consensus 78 P~Y~~~Kl~fllwL~~P~t~GA~~lY~~~l~P 109 (189)
|+-..+=+++++-+......|-..+-+.+++|
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 44444444555555555567888888888876
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.87 E-value=1.8e+02 Score=16.38 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHh
Q 029734 67 EMFADKILCWFPLYHHVKFAFLVWLQ 92 (189)
Q Consensus 67 E~~~d~ll~wiP~Y~~~Kl~fllwL~ 92 (189)
|..+|.++.|.-....+=++++++|.
T Consensus 13 EKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 13 EKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666766666666666777664
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=8.02 E-value=2e+02 Score=16.25 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHhc
Q 029734 67 EMFADKILCWFPLYHHVKFAFLVWLQL 93 (189)
Q Consensus 67 E~~~d~ll~wiP~Y~~~Kl~fllwL~~ 93 (189)
|...+.++.|.-....+=++++++|.+
T Consensus 14 EkTF~gFi~~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 14 QATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677776666666777777653
Done!