Query 029735
Match_columns 189
No_of_seqs 217 out of 1313
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 03:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 4.8E-34 1.7E-38 218.1 14.0 166 3-172 2-181 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 9E-33 3.1E-37 198.8 8.0 124 8-169 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 5E-32 1.7E-36 193.7 8.6 120 8-165 3-125 (126)
4 1rut_X Flinc4, fusion protein 100.0 2.6E-31 9E-36 202.2 7.2 127 7-171 4-136 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 9.9E-30 3.4E-34 190.4 9.3 124 6-168 4-130 (169)
6 2jtn_A LIM domain-binding prot 100.0 2.8E-29 9.7E-34 190.1 9.9 122 5-165 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 6.6E-27 2.2E-31 160.8 6.2 97 6-140 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 2.5E-25 8.5E-30 158.0 5.8 114 6-171 3-120 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 2.3E-22 8E-27 141.0 6.0 109 7-172 2-113 (114)
10 1x3h_A Leupaxin; paxillin fami 99.8 1.5E-21 5E-26 128.4 4.7 79 54-171 1-79 (80)
11 2cuq_A Four and A half LIM dom 99.8 1.7E-21 5.7E-26 128.1 5.0 79 54-171 1-79 (80)
12 1x63_A Skeletal muscle LIM-pro 99.8 2.1E-21 7.1E-26 128.3 4.7 80 54-171 1-81 (82)
13 2ehe_A Four and A half LIM dom 99.8 9.1E-22 3.1E-26 130.0 2.5 80 54-171 1-81 (82)
14 2dlo_A Thyroid receptor-intera 99.8 1.3E-20 4.5E-25 124.2 5.1 64 107-171 16-80 (81)
15 1a7i_A QCRP2 (LIM1); LIM domai 99.8 4.7E-20 1.6E-24 121.5 4.3 67 2-68 1-67 (81)
16 1x6a_A LIMK-2, LIM domain kina 99.8 1.3E-19 4.5E-24 119.3 4.6 77 55-170 2-80 (81)
17 2egq_A FHL1 protein; LIM domai 99.8 9.4E-20 3.2E-24 118.8 3.4 73 54-164 1-77 (77)
18 2cu8_A Cysteine-rich protein 2 99.8 5.7E-19 2E-23 114.9 6.2 70 2-71 3-73 (76)
19 2d8y_A Eplin protein; LIM doma 99.8 1E-18 3.6E-23 117.5 7.5 72 107-178 16-87 (91)
20 1iml_A CRIP, cysteine rich int 99.8 7.2E-19 2.5E-23 114.4 6.3 60 9-68 1-61 (76)
21 2cu8_A Cysteine-rich protein 2 99.8 1.3E-18 4.5E-23 113.1 6.3 70 102-171 5-75 (76)
22 2dj7_A Actin-binding LIM prote 99.7 2.7E-18 9.1E-23 112.8 6.2 66 6-72 13-78 (80)
23 2dar_A PDZ and LIM domain prot 99.7 8.5E-18 2.9E-22 112.8 7.8 64 107-171 26-89 (90)
24 2d8y_A Eplin protein; LIM doma 99.7 4.7E-18 1.6E-22 114.3 5.9 73 7-79 14-86 (91)
25 2dj7_A Actin-binding LIM prote 99.7 6.3E-18 2.2E-22 111.0 5.8 64 107-171 16-79 (80)
26 2cur_A Skeletal muscle LIM-pro 99.7 7.5E-18 2.6E-22 107.5 5.6 65 6-71 3-67 (69)
27 1a7i_A QCRP2 (LIM1); LIM domai 99.7 4.1E-18 1.4E-22 112.1 4.1 65 106-170 7-71 (81)
28 1x68_A FHL5 protein; four-and- 99.7 5E-18 1.7E-22 110.4 4.4 68 107-174 6-76 (76)
29 1wyh_A SLIM 2, skeletal muscle 99.7 1.1E-17 3.9E-22 107.5 5.9 66 7-72 4-70 (72)
30 1g47_A Pinch protein; LIM doma 99.7 7E-18 2.4E-22 109.8 4.7 69 3-71 6-75 (77)
31 2d8z_A Four and A half LIM dom 99.7 1E-17 3.5E-22 107.1 5.4 66 6-72 3-68 (70)
32 1wyh_A SLIM 2, skeletal muscle 99.7 1.8E-17 6E-22 106.5 6.3 65 107-171 6-71 (72)
33 1x4k_A Skeletal muscle LIM-pro 99.7 1.5E-17 5.1E-22 106.9 5.9 66 7-72 4-70 (72)
34 2dar_A PDZ and LIM domain prot 99.7 1.3E-17 4.6E-22 111.8 5.7 66 6-72 23-88 (90)
35 2d8x_A Protein pinch; LIM doma 99.7 1.7E-17 5.7E-22 106.1 5.8 65 5-70 2-66 (70)
36 1x4k_A Skeletal muscle LIM-pro 99.7 2E-17 6.7E-22 106.3 6.0 65 107-171 6-71 (72)
37 1v6g_A Actin binding LIM prote 99.7 8.6E-18 2.9E-22 110.5 4.1 77 55-170 2-79 (81)
38 2d8z_A Four and A half LIM dom 99.7 2.8E-17 9.6E-22 105.0 6.4 64 107-171 6-69 (70)
39 1iml_A CRIP, cysteine rich int 99.7 1.7E-17 5.9E-22 107.8 5.5 68 107-174 1-69 (76)
40 1nyp_A Pinch protein; LIM doma 99.7 1.1E-17 3.7E-22 105.8 4.1 62 7-69 4-65 (66)
41 1x68_A FHL5 protein; four-and- 99.7 1.5E-17 5.1E-22 108.1 4.9 65 7-71 4-71 (76)
42 2cur_A Skeletal muscle LIM-pro 99.7 3.2E-17 1.1E-21 104.5 6.3 63 107-170 6-68 (69)
43 1nyp_A Pinch protein; LIM doma 99.7 1.4E-17 4.7E-22 105.3 4.3 61 107-168 6-66 (66)
44 1x4l_A Skeletal muscle LIM-pro 99.7 1.3E-17 4.6E-22 107.2 3.8 64 6-69 3-69 (72)
45 1x62_A C-terminal LIM domain p 99.7 2.5E-17 8.5E-22 107.9 4.0 65 6-71 13-77 (79)
46 1g47_A Pinch protein; LIM doma 99.7 4E-17 1.4E-21 106.2 4.6 64 107-170 12-76 (77)
47 1x4l_A Skeletal muscle LIM-pro 99.7 5.7E-17 2E-21 104.2 5.3 63 107-169 6-71 (72)
48 1x63_A Skeletal muscle LIM-pro 99.7 7.1E-17 2.4E-21 106.3 5.9 66 7-72 14-80 (82)
49 1j2o_A FLIN2, fusion of rhombo 99.7 8.8E-17 3E-21 112.5 6.6 67 106-172 3-71 (114)
50 2d8x_A Protein pinch; LIM doma 99.7 1.1E-16 3.9E-21 102.2 6.4 64 107-171 6-69 (70)
51 1x64_A Alpha-actinin-2 associa 99.7 1.9E-16 6.5E-21 105.9 7.8 64 106-170 25-88 (89)
52 1x61_A Thyroid receptor intera 99.7 8.7E-17 3E-21 103.3 5.5 63 6-68 3-66 (72)
53 1x64_A Alpha-actinin-2 associa 99.7 6.5E-17 2.2E-21 108.2 4.8 64 7-71 24-87 (89)
54 1x62_A C-terminal LIM domain p 99.7 5.9E-17 2E-21 106.1 4.5 64 106-170 15-78 (79)
55 2cuq_A Four and A half LIM dom 99.7 1E-16 3.5E-21 105.1 5.6 65 7-72 14-78 (80)
56 1x3h_A Leupaxin; paxillin fami 99.7 1.1E-16 3.7E-21 104.9 5.7 64 7-71 14-77 (80)
57 2ehe_A Four and A half LIM dom 99.7 8.3E-17 2.8E-21 106.0 4.7 65 7-71 14-79 (82)
58 2dlo_A Thyroid receptor-intera 99.6 1.3E-16 4.6E-21 104.8 5.4 65 6-71 13-78 (81)
59 2cor_A Pinch protein; LIM doma 99.6 9.4E-17 3.2E-21 105.1 4.5 64 6-71 13-76 (79)
60 2co8_A NEDD9 interacting prote 99.6 5.4E-17 1.9E-21 107.0 2.9 64 5-68 12-77 (82)
61 2cor_A Pinch protein; LIM doma 99.6 2.6E-16 8.8E-21 103.0 5.8 63 107-171 16-78 (79)
62 3f6q_B LIM and senescent cell 99.6 2.1E-16 7.3E-21 101.2 4.6 62 7-68 10-72 (72)
63 1wig_A KIAA1808 protein; LIM d 99.6 1.9E-16 6.5E-21 102.1 4.2 61 7-68 4-65 (73)
64 2co8_A NEDD9 interacting prote 99.6 2.5E-16 8.6E-21 103.8 4.9 65 105-169 14-80 (82)
65 2l4z_A DNA endonuclease RBBP8, 99.6 2.3E-16 7.8E-21 111.7 4.6 62 7-68 60-123 (123)
66 1b8t_A Protein (CRP1); LIM dom 99.6 4.5E-16 1.6E-20 118.3 6.1 61 8-68 115-175 (192)
67 1wig_A KIAA1808 protein; LIM d 99.6 7.6E-16 2.6E-20 99.2 6.0 63 107-170 6-69 (73)
68 2cup_A Skeletal muscle LIM-pro 99.6 5.6E-16 1.9E-20 105.9 5.6 69 107-175 6-75 (101)
69 1x61_A Thyroid receptor intera 99.6 1.2E-15 4.1E-20 97.9 6.5 61 107-167 6-67 (72)
70 3f6q_B LIM and senescent cell 99.6 5.8E-16 2E-20 99.2 4.4 60 107-166 12-72 (72)
71 2xqn_T Testin, TESS; metal-bin 99.6 7.3E-16 2.5E-20 109.5 5.2 68 107-174 4-71 (126)
72 2iyb_E Testin, TESS, TES; LIM 99.6 4.2E-16 1.5E-20 98.2 3.1 59 8-66 2-64 (65)
73 1m3v_A FLIN4, fusion of the LI 99.6 6.4E-16 2.2E-20 109.3 4.4 68 107-174 6-77 (122)
74 2egq_A FHL1 protein; LIM domai 99.6 8.2E-16 2.8E-20 100.0 4.5 60 7-66 14-77 (77)
75 1x6a_A LIMK-2, LIM domain kina 99.6 1.5E-15 5.3E-20 99.6 5.0 63 7-70 14-78 (81)
76 2l4z_A DNA endonuclease RBBP8, 99.6 1.7E-15 5.9E-20 107.2 5.3 60 107-166 62-123 (123)
77 2l3k_A Rhombotin-2, linker, LI 99.6 1.7E-15 5.8E-20 107.2 5.0 69 107-175 9-79 (123)
78 2jtn_A LIM domain-binding prot 99.6 1.6E-15 5.3E-20 114.4 4.9 67 107-174 61-127 (182)
79 2l3k_A Rhombotin-2, linker, LI 99.6 5.7E-15 1.9E-19 104.5 6.6 69 9-77 9-79 (123)
80 2xjy_A Rhombotin-2; oncoprotei 99.5 8.4E-15 2.9E-19 104.6 5.8 68 107-174 3-74 (131)
81 2iyb_E Testin, TESS, TES; LIM 99.5 4.2E-15 1.4E-19 93.5 3.7 58 107-164 3-64 (65)
82 2rgt_A Fusion of LIM/homeobox 99.5 2.1E-14 7.3E-19 106.9 5.9 67 107-174 7-73 (169)
83 1v6g_A Actin binding LIM prote 99.4 3.2E-14 1.1E-18 93.3 2.6 61 7-68 14-75 (81)
84 1rut_X Flinc4, fusion protein 99.4 4.2E-14 1.4E-18 107.1 3.6 68 107-174 6-77 (188)
85 1zfo_A LAsp-1; LIM domain, zin 98.5 3E-08 1E-12 52.6 1.8 29 8-36 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.5 3.5E-08 1.2E-12 52.3 2.1 28 107-134 4-31 (31)
87 2ysm_A Myeloid/lymphoid or mix 91.4 0.55 1.9E-05 31.5 6.0 96 6-163 5-104 (111)
88 2ct0_A Non-SMC element 1 homol 89.7 0.2 6.9E-06 31.4 2.4 36 2-37 9-44 (74)
89 2kwj_A Zinc finger protein DPF 89.4 0.41 1.4E-05 32.4 3.9 49 107-164 59-109 (114)
90 4ap4_A E3 ubiquitin ligase RNF 84.8 0.7 2.4E-05 31.3 3.1 15 53-67 31-45 (133)
91 2jrp_A Putative cytoplasmic pr 81.1 2.6 8.8E-05 26.7 4.3 27 9-46 3-29 (81)
92 1t1h_A Gspef-atpub14, armadill 79.9 2.5 8.5E-05 25.8 4.0 33 35-68 8-40 (78)
93 4gne_A Histone-lysine N-methyl 79.7 3.5 0.00012 27.5 4.9 41 8-62 15-59 (107)
94 3vk6_A E3 ubiquitin-protein li 79.5 1.7 6E-05 28.7 3.2 31 107-143 38-71 (101)
95 1jjd_A Metallothionein, SMTA; 79.1 1.5 5.2E-05 25.6 2.5 28 136-163 10-38 (55)
96 1jjd_A Metallothionein, SMTA; 78.6 0.93 3.2E-05 26.6 1.5 29 37-65 9-38 (55)
97 2ct0_A Non-SMC element 1 homol 78.0 1.6 5.5E-05 27.1 2.7 30 105-134 14-43 (74)
98 2ecy_A TNF receptor-associated 75.6 2.3 7.9E-05 25.1 2.8 31 36-67 16-46 (66)
99 2djb_A Polycomb group ring fin 74.9 2.6 9E-05 25.4 3.0 34 35-68 15-48 (72)
100 2gvi_A Conserved hypothetical 73.9 0.99 3.4E-05 33.8 1.0 31 35-65 172-202 (204)
101 1g25_A CDK-activating kinase a 72.1 4.6 0.00016 23.6 3.6 33 36-68 4-40 (65)
102 4ap4_A E3 ubiquitin ligase RNF 72.1 5.3 0.00018 26.7 4.4 58 7-67 47-110 (133)
103 2ysl_A Tripartite motif-contai 71.5 3.1 0.00011 24.9 2.8 31 36-67 21-51 (73)
104 2eqg_A Tumor necrosis factor, 70.7 2.1 7.1E-05 23.7 1.5 19 147-165 21-39 (49)
105 1x4j_A Ring finger protein 38; 70.3 2.9 0.0001 25.3 2.4 29 8-36 23-53 (75)
106 2xeu_A Ring finger protein 4; 70.2 2.5 8.7E-05 24.5 2.1 41 8-48 3-57 (64)
107 1chc_A Equine herpes virus-1 r 69.6 2.8 9.7E-05 24.7 2.2 41 6-46 3-51 (68)
108 3lrq_A E3 ubiquitin-protein li 68.2 4.6 0.00016 26.1 3.2 33 36-68 23-55 (100)
109 2ea6_A Ring finger protein 4; 68.1 2.9 9.8E-05 24.6 2.0 29 8-36 15-49 (69)
110 2y43_A E3 ubiquitin-protein li 66.6 4.7 0.00016 25.9 3.0 34 35-68 22-55 (99)
111 2ckl_B Ubiquitin ligase protei 65.9 5.1 0.00018 28.4 3.3 35 34-68 53-87 (165)
112 2ecm_A Ring finger and CHY zin 65.8 4.6 0.00016 22.6 2.5 30 7-36 4-36 (55)
113 2ecl_A Ring-box protein 2; RNF 65.6 3.6 0.00012 25.6 2.2 41 6-46 13-75 (81)
114 1jm7_B BARD1, BRCA1-associated 65.3 4 0.00014 27.2 2.5 31 36-67 23-54 (117)
115 3ng2_A RNF4, snurf, ring finge 64.9 3.1 0.00011 24.7 1.7 42 7-48 9-64 (71)
116 3hcs_A TNF receptor-associated 62.2 6.8 0.00023 27.8 3.4 32 36-68 19-50 (170)
117 3hct_A TNF receptor-associated 62.2 6.8 0.00023 26.1 3.2 32 36-68 19-50 (118)
118 3nw0_A Non-structural maintena 60.6 5.5 0.00019 30.4 2.8 43 103-145 177-229 (238)
119 2yur_A Retinoblastoma-binding 60.6 7.6 0.00026 23.4 3.0 32 36-68 16-48 (74)
120 2gvi_A Conserved hypothetical 60.2 2.5 8.6E-05 31.6 0.8 30 134-163 173-202 (204)
121 2ckl_A Polycomb group ring fin 59.6 7.9 0.00027 25.2 3.1 33 35-68 15-48 (108)
122 1rmd_A RAG1; V(D)J recombinati 59.5 8.7 0.0003 25.3 3.4 33 35-68 23-55 (116)
123 1weo_A Cellulose synthase, cat 58.3 14 0.00049 23.7 3.9 12 7-18 15-26 (93)
124 2kre_A Ubiquitin conjugation f 57.2 11 0.00039 24.4 3.5 34 33-67 27-60 (100)
125 2csy_A Zinc finger protein 183 56.7 8.9 0.0003 23.5 2.8 32 36-68 16-47 (81)
126 2cs3_A Protein C14ORF4, MY039 56.6 7.4 0.00025 24.6 2.3 30 10-39 17-46 (93)
127 2ecv_A Tripartite motif-contai 56.0 9.6 0.00033 23.2 2.9 32 36-68 20-51 (85)
128 3fl2_A E3 ubiquitin-protein li 55.6 11 0.00038 25.1 3.4 33 35-68 52-84 (124)
129 1v9x_A Poly (ADP-ribose) polym 54.7 6.3 0.00022 26.6 2.0 15 8-22 20-34 (114)
130 4ayc_A E3 ubiquitin-protein li 54.7 12 0.0004 25.6 3.5 31 36-67 54-84 (138)
131 2ep4_A Ring finger protein 24; 54.4 8.3 0.00028 23.1 2.4 29 8-36 15-45 (74)
132 2kiz_A E3 ubiquitin-protein li 52.9 12 0.00042 21.9 2.9 29 8-36 14-44 (69)
133 1iym_A EL5; ring-H2 finger, ub 52.9 7.6 0.00026 21.6 1.9 30 7-36 4-36 (55)
134 2ecw_A Tripartite motif-contai 52.7 9.6 0.00033 23.2 2.5 32 36-68 20-51 (85)
135 3ztg_A E3 ubiquitin-protein li 52.7 12 0.0004 23.5 3.0 32 36-68 14-46 (92)
136 2vpb_A Hpygo1, pygopus homolog 52.7 6.6 0.00023 23.6 1.6 31 5-35 5-39 (65)
137 2c2l_A CHIP, carboxy terminus 52.6 15 0.00051 27.9 4.1 36 32-68 205-240 (281)
138 1jm7_A BRCA1, breast cancer ty 51.6 11 0.00038 24.4 2.8 32 36-68 22-53 (112)
139 2dmj_A Poly (ADP-ribose) polym 51.3 5.4 0.00019 26.5 1.2 15 8-22 25-39 (106)
140 2kr4_A Ubiquitin conjugation f 50.5 10 0.00035 23.7 2.4 35 33-68 12-46 (85)
141 2ecn_A Ring finger protein 141 50.3 9.2 0.00031 22.5 2.1 37 8-46 15-59 (70)
142 1z6u_A NP95-like ring finger p 49.9 16 0.00056 25.5 3.6 33 35-68 78-110 (150)
143 2ect_A Ring finger protein 126 49.8 27 0.00092 20.9 4.3 39 107-145 16-64 (78)
144 2d8t_A Dactylidin, ring finger 49.3 12 0.00043 22.1 2.6 28 8-36 15-42 (71)
145 2ct2_A Tripartite motif protei 49.2 19 0.00065 22.0 3.6 33 36-68 16-51 (88)
146 1e4u_A Transcriptional repress 48.4 13 0.00045 22.9 2.6 32 36-67 12-46 (78)
147 2f42_A STIP1 homology and U-bo 48.2 18 0.0006 26.4 3.6 35 33-68 104-138 (179)
148 1wgm_A Ubiquitin conjugation f 47.5 22 0.00074 22.9 3.7 34 33-67 20-54 (98)
149 2e5r_A Dystrobrevin alpha; ZZ 45.5 24 0.00081 20.9 3.3 36 127-164 7-45 (63)
150 2vnf_A ING 4, P29ING4, inhibit 44.7 11 0.00037 22.1 1.7 44 8-64 10-58 (60)
151 2ku3_A Bromodomain-containing 44.3 23 0.00077 21.5 3.2 55 2-67 10-68 (71)
152 2g6q_A Inhibitor of growth pro 44.1 13 0.00044 22.0 1.9 44 8-64 11-59 (62)
153 1uw0_A DNA ligase III; DNA rep 44.1 8.7 0.0003 25.9 1.3 15 8-22 15-29 (117)
154 1wen_A Inhibitor of growth fam 43.5 32 0.0011 20.8 3.8 44 8-64 16-64 (71)
155 2d8s_A Cellular modulator of i 43.5 24 0.00082 21.8 3.3 30 7-36 14-49 (80)
156 2ecg_A Baculoviral IAP repeat- 43.2 13 0.00044 22.4 1.9 29 36-65 26-55 (75)
157 3od8_A Poly [ADP-ribose] polym 43.1 12 0.00043 25.2 2.0 15 8-22 38-52 (116)
158 3l11_A E3 ubiquitin-protein li 42.5 10 0.00035 24.9 1.5 30 36-66 16-45 (115)
159 2l0b_A E3 ubiquitin-protein li 42.3 12 0.0004 23.6 1.7 28 9-36 41-70 (91)
160 3odc_A Poly [ADP-ribose] polym 42.2 7.5 0.00026 26.1 0.8 15 8-22 19-33 (111)
161 2k16_A Transcription initiatio 41.7 16 0.00056 22.1 2.3 50 107-165 19-70 (75)
162 2cs2_A Poly [ADP-ribose] polym 40.5 12 0.0004 26.0 1.5 15 8-22 27-41 (134)
163 1f62_A Transcription factor WS 39.5 16 0.00055 20.3 1.8 45 10-63 2-48 (51)
164 1weu_A Inhibitor of growth fam 39.2 31 0.001 22.1 3.3 44 8-64 36-84 (91)
165 3c6w_A P28ING5, inhibitor of g 38.6 12 0.0004 21.9 1.1 44 8-64 9-57 (59)
166 2d8v_A Zinc finger FYVE domain 38.5 12 0.00042 22.6 1.2 14 54-67 26-39 (67)
167 3knv_A TNF receptor-associated 38.0 8.2 0.00028 26.8 0.4 33 35-68 31-63 (141)
168 2jne_A Hypothetical protein YF 37.0 6.9 0.00024 25.6 -0.1 33 107-146 62-94 (101)
169 2yu4_A E3 SUMO-protein ligase 36.2 28 0.00097 22.0 2.9 33 35-68 7-40 (94)
170 2lri_C Autoimmune regulator; Z 36.0 21 0.00071 21.4 2.0 45 8-64 12-58 (66)
171 3vk6_A E3 ubiquitin-protein li 35.9 12 0.00041 24.6 0.9 52 107-158 2-62 (101)
172 1bor_A Transcription factor PM 35.5 15 0.00051 20.8 1.2 11 107-117 38-48 (56)
173 3j21_V 50S ribosomal protein L 35.2 24 0.00082 21.3 2.2 25 8-32 4-31 (66)
174 2ysj_A Tripartite motif-contai 33.7 24 0.00082 20.1 2.0 32 36-68 21-52 (63)
175 1vq8_U 50S ribosomal protein L 33.4 21 0.00071 21.6 1.6 24 9-32 4-30 (66)
176 2lbz_A Thuricin17, thurincin H 32.6 17 0.00057 17.7 0.9 13 34-46 6-18 (31)
177 1wfh_A Zinc finger (AN1-like) 32.6 26 0.00087 21.0 1.9 11 107-117 16-26 (64)
178 2e6s_A E3 ubiquitin-protein li 31.8 39 0.0014 20.8 2.9 27 10-36 28-56 (77)
179 2e6r_A Jumonji/ARID domain-con 31.3 79 0.0027 20.0 4.4 50 107-165 17-68 (92)
180 3nw0_A Non-structural maintena 30.8 17 0.00059 27.6 1.2 16 4-19 176-191 (238)
181 2lbm_A Transcriptional regulat 30.7 54 0.0019 22.8 3.7 32 36-67 15-51 (142)
182 2bay_A PRE-mRNA splicing facto 30.3 44 0.0015 19.3 2.8 32 36-68 4-36 (61)
183 1x4i_A Inhibitor of growth pro 29.1 43 0.0015 20.2 2.6 49 6-67 4-57 (70)
184 1wev_A Riken cDNA 1110020M19; 28.5 31 0.001 21.8 2.0 53 107-164 17-73 (88)
185 2l5u_A Chromodomain-helicase-D 28.3 47 0.0016 19.2 2.7 46 7-64 10-57 (61)
186 1wfp_A Zinc finger (AN1-like) 28.2 34 0.0012 21.1 2.0 11 107-117 26-36 (74)
187 1wg2_A Zinc finger (AN1-like) 26.9 27 0.00092 20.9 1.3 11 107-117 16-26 (64)
188 3dpl_R Ring-box protein 1; ubi 26.8 38 0.0013 22.2 2.2 13 7-19 36-48 (106)
189 3d00_A Tungsten formylmethanof 26.2 8.4 0.00029 28.4 -1.2 26 34-65 162-187 (191)
190 1pft_A TFIIB, PFTFIIBN; N-term 26.0 32 0.0011 19.0 1.5 11 36-46 25-35 (50)
191 2xb1_A Pygopus homolog 2, B-ce 26.0 47 0.0016 21.7 2.6 52 8-66 3-62 (105)
192 4ic3_A E3 ubiquitin-protein li 25.9 27 0.00091 21.0 1.3 29 36-65 25-54 (74)
193 1fp0_A KAP-1 corepressor; PHD 25.1 66 0.0023 20.4 3.1 44 8-63 25-70 (88)
194 2lo3_A SAGA-associated factor 24.0 21 0.00071 19.5 0.4 14 9-22 18-31 (44)
195 2jny_A Uncharacterized BCR; st 23.4 42 0.0014 20.2 1.8 23 37-62 12-34 (67)
196 2ea5_A Cell growth regulator w 23.0 37 0.0013 20.0 1.5 12 107-118 47-58 (68)
197 2puy_A PHD finger protein 21A; 22.9 1.1E+02 0.0039 17.3 4.3 47 107-165 6-54 (60)
198 1znf_A 31ST zinc finger from X 22.8 36 0.0012 14.6 1.2 12 134-145 2-13 (27)
199 2egp_A Tripartite motif-contai 22.6 38 0.0013 20.1 1.6 11 8-18 12-22 (79)
200 2hf1_A Tetraacyldisaccharide-1 22.4 45 0.0015 20.1 1.8 9 54-62 24-32 (68)
201 3htk_C E3 SUMO-protein ligase 22.2 54 0.0018 25.4 2.6 34 35-68 181-214 (267)
202 2js4_A UPF0434 protein BB2007; 22.0 45 0.0015 20.2 1.7 9 10-18 10-18 (70)
203 2jr6_A UPF0434 protein NMA0874 21.8 48 0.0016 20.0 1.8 9 10-18 10-18 (68)
204 2kvh_A Zinc finger and BTB dom 21.7 28 0.00094 15.2 0.6 12 36-47 4-15 (27)
205 2ds5_A CLPX, ATP-dependent CLP 21.7 72 0.0025 18.0 2.5 29 135-163 13-42 (51)
206 2das_A Zinc finger MYM-type pr 21.6 51 0.0017 19.4 1.8 28 36-63 21-52 (62)
207 1vd4_A Transcription initiatio 21.6 14 0.00048 21.0 -0.7 34 9-46 15-50 (62)
208 3o9x_A Uncharacterized HTH-typ 21.5 49 0.0017 22.0 2.1 41 8-48 2-49 (133)
209 4av1_A Poly [ADP-ribose] polym 21.3 20 0.00068 27.1 0.0 15 8-22 143-157 (223)
210 3o36_A Transcription intermedi 21.2 74 0.0025 22.7 3.1 45 8-64 4-50 (184)
211 1kbe_A Kinase suppressor of RA 21.0 35 0.0012 19.1 1.0 11 9-19 15-25 (49)
212 1ovx_A ATP-dependent CLP prote 21.0 73 0.0025 19.2 2.5 29 135-163 20-49 (67)
213 1v87_A Deltex protein 2; ring- 20.9 36 0.0012 22.0 1.2 13 8-20 25-37 (114)
214 1mm2_A MI2-beta; PHD, zinc fin 20.8 81 0.0028 18.2 2.7 45 107-163 10-56 (61)
215 3asl_A E3 ubiquitin-protein li 20.6 63 0.0022 19.3 2.2 26 11-36 21-48 (70)
216 1lv3_A Hypothetical protein YA 20.2 28 0.00097 21.1 0.5 13 56-68 28-41 (68)
217 1ard_A Yeast transcription fac 20.2 42 0.0014 14.6 1.1 12 134-145 3-14 (29)
218 1paa_A Yeast transcription fac 20.1 39 0.0013 15.0 1.0 12 36-47 3-14 (30)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=4.8e-34 Score=218.05 Aligned_cols=166 Identities=28% Similarity=0.592 Sum_probs=133.4
Q ss_pred cCCCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCc
Q 029735 3 SFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPK 82 (189)
Q Consensus 3 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~ 82 (189)
...++.++|.+|+++|+.++.|.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++++|.......+.
T Consensus 2 ~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~-- 79 (192)
T 1b8t_A 2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGT-- 79 (192)
T ss_dssp CCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCC--
T ss_pred CCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCcccccccccccc--
Confidence 335567899999999987889999999999999999999999998899999999999999999999988643221111
Q ss_pred cccccCccC--------------cCCcccccccCCCCCCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCe
Q 029735 83 TVRVERSAD--------------QVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNY 148 (189)
Q Consensus 83 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~ 148 (189)
...+++|+ ....+.+...+ ++.++|..|+++|.+.+.|.++++.||++||+|..|+++|..+.|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~ 157 (192)
T 1b8t_A 80 -LSTDKGESLGIKYEEGQSHRPTNPNASRMAQKV-GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTL 157 (192)
T ss_dssp -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSE
T ss_pred -EecCCCcccccccccccccCCCCcCcccccccc-CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcc
Confidence 11122222 11111122222 234689999999998888899999999999999999999988889
Q ss_pred eecCCccccHhHHHhhhcCCCCCC
Q 029735 149 VAHEHRLYCRHHHNQLFKQKGNFS 172 (189)
Q Consensus 149 ~~~dg~~yC~~c~~~~~~~k~~~~ 172 (189)
+.+||++||+.||.++|+++|...
T Consensus 158 ~~~~g~~yC~~cy~~~f~~kc~~C 181 (192)
T 1b8t_A 158 ADKDGEIYCKGCYAKNFGPKGFGF 181 (192)
T ss_dssp EEETTEEEEHHHHHHHTCCCCCCC
T ss_pred cccCCEEeCHHHHHHhcCCcCCCC
Confidence 999999999999999999999843
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.98 E-value=9e-33 Score=198.76 Aligned_cols=124 Identities=22% Similarity=0.472 Sum_probs=112.3
Q ss_pred CCCcccCCccccccceEeeCCccccccccccccccccccC--CCeeecCCeeeecccHHHHhhccCCCCCCCCCCCcccc
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKL--SNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR 85 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 85 (189)
.++|.+|+++|.+.+.|.++|+.||++||+|..|+.+|.. ..|+.++|++||+.||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 4789999999986667999999999999999999999963 579999999999999999997
Q ss_pred ccCccCcCCcccccccCCCCCC--CCccCCcccccCce-eeccCccccccCceeCCCCCcCC-CCCeeecCCccccHhHH
Q 029735 86 VERSADQVTNSRVSSMFAGTQD--KCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVIS-PSNYVAHEHRLYCRHHH 161 (189)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~-~~~~~~~dg~~yC~~c~ 161 (189)
+ +|..|+++|.+.+. +.++++.||++||+|..|+++|. +..|+..+|++||..||
T Consensus 65 ---------------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~ 123 (131)
T 2xjy_A 65 ---------------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123 (131)
T ss_dssp ---------------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGH
T ss_pred ---------------------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHH
Confidence 5 89999999997654 68999999999999999999995 45689999999999999
Q ss_pred HhhhcCCC
Q 029735 162 NQLFKQKG 169 (189)
Q Consensus 162 ~~~~~~k~ 169 (189)
.++|++++
T Consensus 124 ~~~~~~~~ 131 (131)
T 2xjy_A 124 YEWTKING 131 (131)
T ss_dssp HHHHHHHC
T ss_pred HHHhhccC
Confidence 99998654
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=5e-32 Score=193.66 Aligned_cols=120 Identities=20% Similarity=0.508 Sum_probs=111.8
Q ss_pred CCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCcccccc
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVE 87 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~ 87 (189)
.++|.+|+++|..++.+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------- 63 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------- 63 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-------------------
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-------------------
Confidence 5789999999987889999999999999999999999998899999999999999999987
Q ss_pred CccCcCCcccccccCCCCCCCCccCCcccccCc-eeeccCcccc--ccCceeCCCCCcCCCCCeeecCCccccHhHHHhh
Q 029735 88 RSADQVTNSRVSSMFAGTQDKCVACKKTVYPIE-KVAVDGTSYH--KACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQL 164 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H--~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~ 164 (189)
++|.+|+++|.+.+ .|.++++.|| ++||+|..|+++|.+..|+..||++||..++.++
T Consensus 64 -------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 64 -------------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp -------------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHS
T ss_pred -------------------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhh
Confidence 89999999999754 4789999999 9999999999999988899999999999888876
Q ss_pred h
Q 029735 165 F 165 (189)
Q Consensus 165 ~ 165 (189)
|
T Consensus 125 f 125 (126)
T 2xqn_T 125 M 125 (126)
T ss_dssp C
T ss_pred c
Confidence 6
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=2.6e-31 Score=202.23 Aligned_cols=127 Identities=21% Similarity=0.520 Sum_probs=111.8
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccC--CCeeecCCeeeecccHHHHhhccCCCCCCCCCCCccc
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKL--SNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTV 84 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 84 (189)
..++|.+|+++|.+.+.|.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---------------- 67 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---------------- 67 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS----------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc----------------
Confidence 46899999999986667999999999999999999999986 589999999999999999997
Q ss_pred cccCccCcCCcccccccCCCCCC--CCccCCcccccCce-eeccCccccccCceeCCCCCcCCC-CCeeecCCccccHhH
Q 029735 85 RVERSADQVTNSRVSSMFAGTQD--KCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISP-SNYVAHEHRLYCRHH 160 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~-~~~~~~dg~~yC~~c 160 (189)
+ +|..|+++|.+.+. +.++++.||++||+|..|+++|.. ..|+..++++||..|
T Consensus 68 ----------------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c 125 (188)
T 1rut_X 68 ----------------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125 (188)
T ss_dssp ----------------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGG
T ss_pred ----------------------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHH
Confidence 5 79999999997664 689999999999999999999964 568899999999999
Q ss_pred HHhhhcCCCCC
Q 029735 161 HNQLFKQKGNF 171 (189)
Q Consensus 161 ~~~~~~~k~~~ 171 (189)
|.++|++++..
T Consensus 126 ~~~~~~~~~~~ 136 (188)
T 1rut_X 126 RPTALINGHLN 136 (188)
T ss_dssp CCTTTC-----
T ss_pred HHHHhcccccc
Confidence 99999999864
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=9.9e-30 Score=190.44 Aligned_cols=124 Identities=23% Similarity=0.483 Sum_probs=108.8
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCcccc
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVR 85 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|.+|+++|.+.++|.++|+.||++||+|..|+++|.+.. +.++|++||+.||.++++
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-----------------
Confidence 34689999999998766899999999999999999999998776 489999999999999998
Q ss_pred ccCccCcCCcccccccCCCCCCCCccCCcccccCce-eeccCccccccCceeCCCCCcCCC-CCee-ecCCccccHhHHH
Q 029735 86 VERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISP-SNYV-AHEHRLYCRHHHN 162 (189)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~-~~~~-~~dg~~yC~~c~~ 162 (189)
++|..|+++|.+.+. +.++++.||++||+|..|+++|.. ..|+ ..||++||..||.
T Consensus 66 ---------------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 66 ---------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp ---------------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred ---------------------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHH
Confidence 899999999998775 479999999999999999999985 3454 4689999999999
Q ss_pred hhhcCC
Q 029735 163 QLFKQK 168 (189)
Q Consensus 163 ~~~~~k 168 (189)
++++..
T Consensus 125 ~~~~~~ 130 (169)
T 2rgt_A 125 TAKQGG 130 (169)
T ss_dssp HHHHCC
T ss_pred HHhhcc
Confidence 998653
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=2.8e-29 Score=190.06 Aligned_cols=122 Identities=23% Similarity=0.510 Sum_probs=107.8
Q ss_pred CCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCccc
Q 029735 5 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTV 84 (189)
Q Consensus 5 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 84 (189)
....++|.+|+++|...+.+.++|+.||+.||+|..|+++|.+..| .++|++||..||.++|+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc----------------
Confidence 3456899999999987677899999999999999999999987765 79999999999999997
Q ss_pred cccCccCcCCcccccccCCCCCCCCccCCcccccCce-eeccCccccccCceeCCCCCcCCC-CCee-ecCCccccHhHH
Q 029735 85 RVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISP-SNYV-AHEHRLYCRHHH 161 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~-~~~~-~~dg~~yC~~c~ 161 (189)
++|..|+++|.+.+. +.+.++.||++||+|..|+++|.. ..|+ ..+|++||..||
T Consensus 120 ----------------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy 177 (182)
T 2jtn_A 120 ----------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177 (182)
T ss_dssp ----------------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHH
T ss_pred ----------------------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHH
Confidence 899999999997664 478999999999999999999985 3455 568999999999
Q ss_pred Hhhh
Q 029735 162 NQLF 165 (189)
Q Consensus 162 ~~~~ 165 (189)
.++.
T Consensus 178 ~~~~ 181 (182)
T 2jtn_A 178 ETAK 181 (182)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8763
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=6.6e-27 Score=160.78 Aligned_cols=97 Identities=25% Similarity=0.579 Sum_probs=89.1
Q ss_pred CCCCCcccCCccccc-cceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCccc
Q 029735 6 GTTQKCKACEKTVYL-VDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTV 84 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 84 (189)
...++|.+|+++|.. ++.|.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---------------- 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---------------- 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----------------
Confidence 457899999999975 678999999999999999999999988889999999999999999887
Q ss_pred cccCccCcCCcccccccCCCCCCCCccCCcccccCc-eeeccCccccccCceeCCCC
Q 029735 85 RVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIE-KVAVDGTSYHKACFRCTHGG 140 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~ 140 (189)
++|..|+++|.+++ .|.++++.||++||+|..|+
T Consensus 67 ----------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 ----------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ----------------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ----------------------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 89999999999654 58999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=2.5e-25 Score=158.04 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=99.6
Q ss_pred CCCCCcccCCccccccceEeeCCcccccccccccccccccc--CCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCcc
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLK--LSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKT 83 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 83 (189)
...++|.+|+++|.+.+.|.++++.||++||+|..|+++|. +..|+.++|++||..||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--------------- 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---------------
Confidence 35789999999998777799999999999999999999997 3579999999999999999997
Q ss_pred ccccCccCcCCcccccccCCCCCC--CCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHH
Q 029735 84 VRVERSADQVTNSRVSSMFAGTQD--KCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHH 161 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~ 161 (189)
+ +|..|+++|.+.+ +++.++ .+|.++.|+.+|++|||..||
T Consensus 68 -----------------------~~~~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~ 110 (122)
T 1m3v_A 68 -----------------------NSGAGGSGGHMGSGGD-VMVVGE-------------PTLMGGEFGDEDERLITRLEN 110 (122)
T ss_dssp -----------------------CCCSSSCSSCCSCCEE-SSSSSS-------------SSCCSCTTCCTTCCCCEECTT
T ss_pred -----------------------CCCccccCCCCcCchh-eEEcCC-------------cCCCCCccEecCCEeEccCcc
Confidence 5 8999999998755 566553 357778899999999999999
Q ss_pred HhhhcCCCCC
Q 029735 162 NQLFKQKGNF 171 (189)
Q Consensus 162 ~~~~~~k~~~ 171 (189)
.+++.++++-
T Consensus 111 ~~~~~~~g~~ 120 (122)
T 1m3v_A 111 TQFDAANGID 120 (122)
T ss_dssp TTTTCCSCCC
T ss_pred hhchhhcCCC
Confidence 9999887763
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=2.3e-22 Score=140.99 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccC--CCeeecCCeeeecccHHHHhhccCCCCCCCCCCCccc
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKL--SNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKTV 84 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 84 (189)
+.++|.+|+++|.+.+.|.++++.||++||+|+.|+++|.+ ..|+.++|++||+.||.++|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~---------------- 65 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG---------------- 65 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT----------------
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC----------------
Confidence 56899999999987668999999999999999999999975 579999999999999999998
Q ss_pred cccCccCcCCcccccccCCCCCCCCccCCcccccCceeeccCccccccCceeCCCCCc-CCCCCeeecCCccccHhHHHh
Q 029735 85 RVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCV-ISPSNYVAHEHRLYCRHHHNQ 163 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~-l~~~~~~~~dg~~yC~~c~~~ 163 (189)
++|..|.. ++.+. |..+ |.++.|+.+|++|||..|+.+
T Consensus 66 ----------------------~~c~~c~~----~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 66 ----------------------SGGHMGSG----GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp ----------------------SCCSSCBS----CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred ----------------------cccCcCCC----CceeE---------------cCCccCCCCeeEEcCCEeecchhhhc
Confidence 56665541 11111 2344 556679999999999999999
Q ss_pred hhcCCCCCC
Q 029735 164 LFKQKGNFS 172 (189)
Q Consensus 164 ~~~~k~~~~ 172 (189)
+.++.++.+
T Consensus 105 ~~~~~g~~~ 113 (114)
T 1j2o_A 105 FDAANGIDD 113 (114)
T ss_dssp CCCTTSSCC
T ss_pred cccccCCCC
Confidence 888777643
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.5e-21 Score=128.39 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=73.1
Q ss_pred CCeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCcccccCceeeccCccccccC
Q 029735 54 EGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKAC 133 (189)
Q Consensus 54 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~C 133 (189)
+|++||++||.++++ ++|..|+++|.+ +.|.++++.||++|
T Consensus 1 gg~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~~-~~v~a~~~~~H~~C 41 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS--------------------------------------PKCGGCNRPVLE-NYLSAMDTVWHPEC 41 (80)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------------CBCTTTCCBCCS-SCEEETTEEECTTT
T ss_pred CCCccchhHHhhhcC--------------------------------------CccccCCCeecc-eeEEECCCeEecCc
Confidence 478999999988876 899999999997 55899999999999
Q ss_pred ceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 134 FRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 134 f~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
|+|..|+++|..+.|+.++|++||+.||.++|+++|..
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 99999999999888999999999999999999999974
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=1.7e-21 Score=128.12 Aligned_cols=79 Identities=19% Similarity=0.438 Sum_probs=73.2
Q ss_pred CCeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCcccccCceeeccCccccccC
Q 029735 54 EGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKAC 133 (189)
Q Consensus 54 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~C 133 (189)
+|++||++||.++++ ++|..|+++|.+. .|.++++.||++|
T Consensus 1 gg~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~~-~v~a~~~~~H~~C 41 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA--------------------------------------PRCARCSKTLTQG-GVTYRDQPWHREC 41 (80)
T ss_dssp CCCCSCCCCCCCCSS--------------------------------------CCCTTTCCCCCSC-CEESSSSEECTTT
T ss_pred CCcEEcHHHHccccC--------------------------------------CcCCCCCCEecCc-EEEECCchhhhhh
Confidence 578999999998876 8999999999864 6899999999999
Q ss_pred ceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 134 FRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 134 f~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
|+|..|+++|.+..|+.++|++||+.||.++|+++|+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 99999999998888999999999999999999999975
No 12
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2.1e-21 Score=128.26 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=73.5
Q ss_pred CCeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCcccccCce-eeccCcccccc
Q 029735 54 EGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEK-VAVDGTSYHKA 132 (189)
Q Consensus 54 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~g~~~H~~ 132 (189)
++.+||++||.++++ ++|.+|+++|.+.+. |.++++.||++
T Consensus 1 ~~~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~ 42 (82)
T 1x63_A 1 GSSGSSGKCTTREDS--------------------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKD 42 (82)
T ss_dssp CCSCCCCCCCSCCCS--------------------------------------CBCSSSCCBCCSSSCEEECSSCEEETT
T ss_pred CCCcCchhHHccccC--------------------------------------CcCccCCcccccCceEEEECccccccc
Confidence 367999999988876 899999999997664 78999999999
Q ss_pred CceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 133 CFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 133 Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
||+|..|+++|..+.|+.++|++||+.||.++|++++..
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 999999999999888999999999999999999999875
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.1e-22 Score=130.03 Aligned_cols=80 Identities=16% Similarity=0.440 Sum_probs=73.1
Q ss_pred CCeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCccccc-CceeeccCcccccc
Q 029735 54 EGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYP-IEKVAVDGTSYHKA 132 (189)
Q Consensus 54 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~-~~~v~~~g~~~H~~ 132 (189)
+|++||+.||.++++ ++|..|+++|.+ ...+.++++.||++
T Consensus 1 ~g~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~ 42 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA--------------------------------------NTCAECQQLIGHDSRELFYEDRHFHEG 42 (82)
T ss_dssp CCCCCCCCCCCCCCS--------------------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTT
T ss_pred CCceechhHhCcccC--------------------------------------CcCccCCCccccCcEEEEeCCcccccc
Confidence 588999999998887 899999999994 34468899999999
Q ss_pred CceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 133 CFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 133 Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
||+|..|+++|.+..|+.++|+|||+.||.++|+++|..
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 999999999999888999999999999999999999974
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=1.3e-20 Score=124.18 Aligned_cols=64 Identities=17% Similarity=0.468 Sum_probs=58.5
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeec-CCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAH-EHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~-dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|.+ ..|.++++.||++||+|..|+++|.+..|+.. +|+|||+.||.++|+++|..
T Consensus 16 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 16 EKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 899999999995 46899999999999999999999998778765 79999999999999999974
No 15
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=4.7e-20 Score=121.50 Aligned_cols=67 Identities=27% Similarity=0.699 Sum_probs=58.0
Q ss_pred CcCCCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 2 ASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 2 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
|+|.+..++|.+|+++|..++.+.++++.||++||+|..|+++|....|+.+++++||..||.++++
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 6778889999999999988889999999999999999999999998889999999999999999998
No 16
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.3e-19 Score=119.29 Aligned_cols=77 Identities=19% Similarity=0.397 Sum_probs=69.0
Q ss_pred CeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCcccccCceeeccCccccccCc
Q 029735 55 GVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACF 134 (189)
Q Consensus 55 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 134 (189)
+.+||+.||.++++ ++|..|+++|. .+.|.++++.||++||
T Consensus 2 ~~~yC~~~y~~~~~--------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF 42 (81)
T 1x6a_A 2 SSGSSGKDYWGKFG--------------------------------------EFCHGCSLLMT-GPFMVAGEFKYHPECF 42 (81)
T ss_dssp CCCCCCCCSSCCSS--------------------------------------CBCTTTCCBCC-SCCBCCTTCCBCTTSC
T ss_pred CCccchhHHhhhcC--------------------------------------CcCccCCCCcC-ceEEEECCceeccccC
Confidence 67999999998887 89999999999 4558999999999999
Q ss_pred eeCCCCCcCCC-CCee-ecCCccccHhHHHhhhcCCCC
Q 029735 135 RCTHGGCVISP-SNYV-AHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 135 ~C~~C~~~l~~-~~~~-~~dg~~yC~~c~~~~~~~k~~ 170 (189)
+|..|+++|.. ..|+ ..+|+|||+.||.++|+++++
T Consensus 43 ~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 43 ACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp BCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 99999999975 5576 589999999999999998875
No 17
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.4e-20 Score=118.82 Aligned_cols=73 Identities=23% Similarity=0.554 Sum_probs=66.1
Q ss_pred CCeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCccccc----CceeeccCccc
Q 029735 54 EGVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYP----IEKVAVDGTSY 129 (189)
Q Consensus 54 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~----~~~v~~~g~~~ 129 (189)
++++||++||.++++ ++|++|+++|.+ .+.+.++++.|
T Consensus 1 g~~~yC~~cy~~~~~--------------------------------------~~C~~C~~~I~~~g~~~~~~~a~~~~~ 42 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA--------------------------------------KKCAGCKNPITGFGKGSSVVAYEGQSW 42 (77)
T ss_dssp CCSSCCTTCCCSCCC--------------------------------------CCCSSSCCCCCCCSSCCCEEEETTEEE
T ss_pred CCCeEchhHhchhhC--------------------------------------ccCcccCCcccCCCCCceeEEECccee
Confidence 478999999998876 899999999995 35689999999
Q ss_pred cccCceeCCCCCcCCCCCeeecCCccccHhHHHhh
Q 029735 130 HKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQL 164 (189)
Q Consensus 130 H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~ 164 (189)
|++||+|..|+++|.+..|+.++|+|||+.||.++
T Consensus 43 H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 43 HDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp ETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 99999999999999988899999999999999763
No 18
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=5.7e-19 Score=114.85 Aligned_cols=70 Identities=30% Similarity=0.723 Sum_probs=65.0
Q ss_pred CcCCCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeec-ccHHHHhhccC
Q 029735 2 ASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCK-PHFDQLFKMTG 71 (189)
Q Consensus 2 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~~~~~~ 71 (189)
++|+...++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+.+++++||. .||.++|+++|
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhccccc
Confidence 56788899999999999888999999999999999999999999988899999999999 79999998655
No 19
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1e-18 Score=117.50 Aligned_cols=72 Identities=39% Similarity=0.834 Sum_probs=68.0
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCCCChh
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHE 178 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~~~~~ 178 (189)
++|..|+++|.+.+.|.++++.||++||+|..|+++|..+.|+.+||++||+.||.++|+++|+++.++++.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~ 87 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSG 87 (91)
T ss_dssp CBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCC
T ss_pred CcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCC
Confidence 799999999998888999999999999999999999998889999999999999999999999999988764
No 20
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=7.2e-19 Score=114.37 Aligned_cols=60 Identities=33% Similarity=0.843 Sum_probs=57.1
Q ss_pred CCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeec-ccHHHHhh
Q 029735 9 QKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCK-PHFDQLFK 68 (189)
Q Consensus 9 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~~~ 68 (189)
|+|.+|+++|..++.|.++|+.||++||+|..|+++|.+..|+.++|++||. .||.++++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 5799999999878999999999999999999999999988999999999999 69999998
No 21
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.3e-18 Score=113.14 Aligned_cols=70 Identities=30% Similarity=0.600 Sum_probs=63.9
Q ss_pred CCCCCCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccH-hHHHhhhcCCCCC
Q 029735 102 FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR-HHHNQLFKQKGNF 171 (189)
Q Consensus 102 ~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~-~c~~~~~~~k~~~ 171 (189)
|.+..++|..|+++|.+.+.|.++++.||++||+|..|+++|....|+.+|+++||+ .||.++|+++|..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 344458999999999988889999999999999999999999988899999999999 7999999999964
No 22
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.7e-18 Score=112.83 Aligned_cols=66 Identities=29% Similarity=0.619 Sum_probs=60.4
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
.+.++|.+|+++|+.++.|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|+
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 457899999999988899999999999999999999999985 799999999999999999996664
No 23
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=8.5e-18 Score=112.78 Aligned_cols=64 Identities=20% Similarity=0.425 Sum_probs=59.9
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|. .+.|.++++.||++||+|..|+++|....|+.++|++||+.||.++|+++|..
T Consensus 26 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 26 PMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 89999999997 45689999999999999999999999888999999999999999999999974
No 24
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=4.7e-18 Score=114.27 Aligned_cols=73 Identities=45% Similarity=1.023 Sum_probs=66.7
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCC
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEG 79 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 79 (189)
..++|.+|+++|.+.+.|.++++.||++||+|..|+++|....|+.+++++||..||.++++++|+.+..|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~ 86 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGS 86 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCC
Confidence 4679999999998778999999999999999999999999888999999999999999999998887666643
No 25
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=6.3e-18 Score=111.02 Aligned_cols=64 Identities=17% Similarity=0.514 Sum_probs=60.2
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|...+.|.++++.||++||+|..|+++|.+ .|+.+||+|||+.||.++|+++|..
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 789999999998888999999999999999999999985 6899999999999999999999974
No 26
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=7.5e-18 Score=107.48 Aligned_cols=65 Identities=20% Similarity=0.540 Sum_probs=59.6
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||..||.++++++|
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 67 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCC
Confidence 45789999999996 678999999999999999999999998899999999999999999998544
No 27
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.71 E-value=4.1e-18 Score=112.08 Aligned_cols=65 Identities=32% Similarity=0.703 Sum_probs=57.7
Q ss_pred CCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCC
Q 029735 106 QDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 106 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
.++|..|+++|.+.+.+.+.++.||++||+|..|+++|....|+.+++++||+.||.++|+++|.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCccc
Confidence 48999999999888889999999999999999999999988899999999999999999999998
No 28
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=5e-18 Score=110.37 Aligned_cols=68 Identities=16% Similarity=0.463 Sum_probs=63.0
Q ss_pred CCCccCCccccc---CceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCC
Q 029735 107 DKCVACKKTVYP---IEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~---~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~ 174 (189)
++|..|+++|.+ .+.|.++++.||++||+|..|+++|....|+.+||+|||+.||.++|+++|..++|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~sg 76 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSSG 76 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCCC
Confidence 799999999995 35689999999999999999999999888999999999999999999999997765
No 29
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1.1e-17 Score=107.45 Aligned_cols=66 Identities=27% Similarity=0.619 Sum_probs=60.4
Q ss_pred CCCCcccCCcccccc-ceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 7 TTQKCKACEKTVYLV-DQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
..++|.+|+++|.++ +.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 467999999999874 789999999999999999999999988999999999999999999996653
No 30
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=7e-18 Score=109.82 Aligned_cols=69 Identities=25% Similarity=0.584 Sum_probs=61.0
Q ss_pred cCCCCCCCcccCCccccccc-eEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 3 SFAGTTQKCKACEKTVYLVD-QLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 3 ~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
+.....++|.+|+++|.+++ .+.++|+.||++||+|..|+++|.++.|+.++|++||+.||.++++++|
T Consensus 6 ~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C 75 (77)
T 1g47_A 6 ANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75 (77)
T ss_dssp CSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC-
T ss_pred ccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhccc
Confidence 44556789999999998544 5789999999999999999999998899999999999999999998655
No 31
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1e-17 Score=107.11 Aligned_cols=66 Identities=24% Similarity=0.568 Sum_probs=60.0
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||..||.++++++|+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 35689999999996 6779999999999999999999999888999999999999999999986553
No 32
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.8e-17 Score=106.54 Aligned_cols=65 Identities=25% Similarity=0.523 Sum_probs=60.9
Q ss_pred CCCccCCcccccC-ceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPI-EKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~-~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|.+. +.+.++++.||++||+|..|+++|..+.|+.++|++||+.||.++|+++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 7999999999975 5678999999999999999999999888999999999999999999999975
No 33
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.5e-17 Score=106.89 Aligned_cols=66 Identities=20% Similarity=0.585 Sum_probs=60.3
Q ss_pred CCCCcccCCcccccc-ceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 7 TTQKCKACEKTVYLV-DQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
..++|.+|+++|.++ ..|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 467999999999875 489999999999999999999999988999999999999999999996653
No 34
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.3e-17 Score=111.83 Aligned_cols=66 Identities=29% Similarity=0.600 Sum_probs=60.7
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||..||.++|+++|+
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 35688999999995 8899999999999999999999999988999999999999999999997664
No 35
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.7e-17 Score=106.14 Aligned_cols=65 Identities=22% Similarity=0.507 Sum_probs=59.7
Q ss_pred CCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhcc
Q 029735 5 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMT 70 (189)
Q Consensus 5 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~ 70 (189)
+++.++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||..||.+++++.
T Consensus 2 s~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 2 SSGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 356789999999996 68899999999999999999999999889999999999999999999743
No 36
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2e-17 Score=106.32 Aligned_cols=65 Identities=23% Similarity=0.543 Sum_probs=60.9
Q ss_pred CCCccCCcccccCc-eeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIE-KVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|.+.+ .+.++++.||++||+|..|+++|..+.|+.+||++||+.||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 79999999999864 578999999999999999999999888999999999999999999999975
No 37
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=8.6e-18 Score=110.55 Aligned_cols=77 Identities=18% Similarity=0.398 Sum_probs=66.6
Q ss_pred CeeeecccHHHHhhccCCCCCCCCCCCccccccCccCcCCcccccccCCCCCCCCccCCcccccCceeeccCccccccCc
Q 029735 55 GVLYCKPHFDQLFKMTGSLDKSFEGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACF 134 (189)
Q Consensus 55 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 134 (189)
..+||+.||.++++ ++|..|+++|.+ +.|.++++.||++||
T Consensus 2 ~~~yC~~dy~~~~~--------------------------------------~~C~~C~~~I~~-~~v~a~~~~wH~~CF 42 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG--------------------------------------TRCFSCDQFIEG-EVVSALGKTYHPDCF 42 (81)
T ss_dssp CCCCCCSCGGGSCC--------------------------------------CBCTTTCCBCCS-CCEEETTEEECTTTS
T ss_pred CCCcchHHHHhHhC--------------------------------------CcCccccCEecc-ceEEECCceeCccCC
Confidence 46899999999987 899999999994 568999999999999
Q ss_pred eeCCCCCcCCCCCeeecCC-ccccHhHHHhhhcCCCC
Q 029735 135 RCTHGGCVISPSNYVAHEH-RLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 135 ~C~~C~~~l~~~~~~~~dg-~~yC~~c~~~~~~~k~~ 170 (189)
+|..|+++|..+.++..++ .+||..||.++++..++
T Consensus 43 ~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~s 79 (81)
T 1v6g_A 43 VCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGPS 79 (81)
T ss_dssp SCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCCC
T ss_pred ccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCCC
Confidence 9999999998766666555 57999999988877654
No 38
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2.8e-17 Score=105.03 Aligned_cols=64 Identities=27% Similarity=0.524 Sum_probs=59.9
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|.+ +.|.++++.||++||+|..|+++|....|+.+|+++||+.||.++|+++|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 789999999986 4589999999999999999999999888999999999999999999999974
No 39
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.7e-17 Score=107.79 Aligned_cols=68 Identities=29% Similarity=0.595 Sum_probs=62.7
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccH-hHHHhhhcCCCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR-HHHNQLFKQKGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~-~c~~~~~~~k~~~~~~ 174 (189)
++|..|+++|..++.|.++++.||++||+|..|+++|..+.|+.+||.+||+ .||.++|+++|..+.+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~ 69 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGG 69 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCC
Confidence 4799999999977889999999999999999999999988899999999999 6999999999986543
No 40
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=1.1e-17 Score=105.82 Aligned_cols=62 Identities=26% Similarity=0.539 Sum_probs=58.0
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhc
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKM 69 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 69 (189)
..++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 4678999999997 8899999999999999999999999988999999999999999999874
No 41
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.5e-17 Score=108.11 Aligned_cols=65 Identities=17% Similarity=0.411 Sum_probs=58.6
Q ss_pred CCCCcccCCccccc---cceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 7 TTQKCKACEKTVYL---VDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 7 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
..++|.+|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+.+++++||..||.++++++|
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C 71 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDIS 71 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcC
Confidence 46799999999973 378999999999999999999999998889999999999999999988433
No 42
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.2e-17 Score=104.52 Aligned_cols=63 Identities=19% Similarity=0.509 Sum_probs=59.2
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
++|..|+++|.+ +.|.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+++|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 799999999985 468999999999999999999999988899999999999999999999985
No 43
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=1.4e-17 Score=105.33 Aligned_cols=61 Identities=25% Similarity=0.404 Sum_probs=57.6
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQK 168 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k 168 (189)
++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+||.+||+.||.++|++|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 78999999999 56689999999999999999999999888999999999999999999986
No 44
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.3e-17 Score=107.15 Aligned_cols=64 Identities=14% Similarity=0.409 Sum_probs=58.5
Q ss_pred CCCCCcccCCccccc---cceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhc
Q 029735 6 GTTQKCKACEKTVYL---VDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKM 69 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 69 (189)
...++|.+|+++|.+ .++|.++++.||++||+|..|+++|.+..|+.+++++||..||.++++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 457899999999974 3689999999999999999999999988999999999999999998874
No 45
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2.5e-17 Score=107.87 Aligned_cols=65 Identities=18% Similarity=0.406 Sum_probs=59.4
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
...++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||..||.+++++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34679999999997 578999999999999999999999988889999999999999999998654
No 46
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4e-17 Score=106.21 Aligned_cols=64 Identities=31% Similarity=0.566 Sum_probs=58.0
Q ss_pred CCCccCCcccccCce-eeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCC
Q 029735 107 DKCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
++|.+|+++|.+.+. +.++|+.||++||+|..|+++|..+.|+.+||++||+.||.++|+++|.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 899999999986554 5799999999999999999999988899999999999999999999986
No 47
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.7e-17 Score=104.17 Aligned_cols=63 Identities=11% Similarity=0.459 Sum_probs=58.1
Q ss_pred CCCccCCccccc---CceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCC
Q 029735 107 DKCVACKKTVYP---IEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKG 169 (189)
Q Consensus 107 ~~C~~C~~~I~~---~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~ 169 (189)
++|..|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+.++|++||..||.++|+|++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 799999999996 355789999999999999999999998889999999999999999999875
No 48
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.1e-17 Score=106.31 Aligned_cols=66 Identities=27% Similarity=0.594 Sum_probs=60.1
Q ss_pred CCCCcccCCccccccc-eEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 7 TTQKCKACEKTVYLVD-QLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
..++|.+|+++|.+++ .|.++++.||++||+|..|+++|....|+.+++++||+.||.++++++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 3679999999998655 58999999999999999999999988999999999999999999987664
No 49
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=8.8e-17 Score=112.45 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=61.3
Q ss_pred CCCCccCCcccccCceeeccCccccccCceeCCCCCcCCC--CCeeecCCccccHhHHHhhhcCCCCCC
Q 029735 106 QDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISP--SNYVAHEHRLYCRHHHNQLFKQKGNFS 172 (189)
Q Consensus 106 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~--~~~~~~dg~~yC~~c~~~~~~~k~~~~ 172 (189)
.++|.+|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.+||+|||+.||.++|+++|...
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSC
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcC
Confidence 3799999999998777899999999999999999999985 479999999999999999999998744
No 50
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.1e-16 Score=102.21 Aligned_cols=64 Identities=23% Similarity=0.454 Sum_probs=59.0
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|.+ +.|.++++.||++||+|..|+++|....|+.++|++||+.||.++|+++...
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~s 69 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSS 69 (70)
T ss_dssp SBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSCC
T ss_pred CcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCCC
Confidence 789999999985 5589999999999999999999999988899999999999999999988653
No 51
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.9e-16 Score=105.92 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=59.4
Q ss_pred CCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCC
Q 029735 106 QDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 106 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
.++|..|+++|.+ +.+.++++.||++||+|..|+++|....|+.+||++||+.||.++|++|+.
T Consensus 25 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3789999999997 558999999999999999999999988899999999999999999999974
No 52
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.7e-17 Score=103.29 Aligned_cols=63 Identities=22% Similarity=0.569 Sum_probs=57.7
Q ss_pred CCCCCcccCCcccccc-ceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 6 GTTQKCKACEKTVYLV-DQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
...++|.+|+++|.++ ..+.++++.||++||+|..|+++|.+..|+.+++++||..||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 3568999999999864 48999999999999999999999988889999999999999999985
No 53
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=6.5e-17 Score=108.23 Aligned_cols=64 Identities=28% Similarity=0.533 Sum_probs=58.8
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
..++|.+|+++|. +++|.++++.||++||+|..|+++|....|+.+++++||+.||.++|++++
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 4578999999997 588999999999999999999999988889999999999999999998654
No 54
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.9e-17 Score=106.06 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=59.2
Q ss_pred CCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCC
Q 029735 106 QDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 106 ~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
.++|..|+++|.+ +.|.++++.||++||+|..|+++|....|+.+|+++||+.||.++|++++.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3799999999996 468999999999999999999999877799999999999999999999975
No 55
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1e-16 Score=105.07 Aligned_cols=65 Identities=26% Similarity=0.568 Sum_probs=59.6
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCC
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 72 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~ 72 (189)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|+
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 4689999999996 5789999999999999999999999888999999999999999999996664
No 56
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.1e-16 Score=104.94 Aligned_cols=64 Identities=23% Similarity=0.611 Sum_probs=59.1
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.++.|+.+++++||+.||.++++++|
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C 77 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSC
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCC
Confidence 3679999999997 588999999999999999999999998889999999999999999999555
No 57
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-17 Score=106.02 Aligned_cols=65 Identities=20% Similarity=0.550 Sum_probs=59.1
Q ss_pred CCCCcccCCccccc-cceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 7 TTQKCKACEKTVYL-VDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 7 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
..++|.+|+++|.+ +..+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++++|
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C 79 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCC
Confidence 46799999999973 567889999999999999999999998899999999999999999998655
No 58
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.3e-16 Score=104.78 Aligned_cols=65 Identities=26% Similarity=0.516 Sum_probs=58.6
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeec-CCeeeecccHHHHhhccC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSF-EGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~~~~ 71 (189)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.. ++++||..||.++|+++|
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C 78 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSS
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcC
Confidence 45789999999997 678999999999999999999999988788876 799999999999999655
No 59
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=9.4e-17 Score=105.12 Aligned_cols=64 Identities=25% Similarity=0.479 Sum_probs=57.4
Q ss_pred CCCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccC
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTG 71 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 71 (189)
...++|.+|+++|. ++.|.++|+.||++||+|..|+++|.+.. +.+++++||..||.++|+|.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSS
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCC
Confidence 34689999999997 78899999999999999999999998765 599999999999999998644
No 60
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=5.4e-17 Score=107.01 Aligned_cols=64 Identities=33% Similarity=0.800 Sum_probs=58.1
Q ss_pred CCCCCCcccCCccccccceEeeCCccccccccccccccccccCCCee--ecCCeeeecccHHHHhh
Q 029735 5 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYC--SFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 5 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~cy~~~~~ 68 (189)
.++.++|.+|+++|+.++.|.++++.||++||+|..|+++|....|+ ++++++||+.||.++++
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 44578999999999888899999999999999999999999988887 47999999999988875
No 61
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.6e-16 Score=103.01 Aligned_cols=63 Identities=17% Similarity=0.372 Sum_probs=57.4
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF 171 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~ 171 (189)
++|..|+++|. ++.|.++++.||++||+|..|+++|.... +.+||++||+.||.++|+|+++.
T Consensus 16 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ss 78 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPSS 78 (79)
T ss_dssp CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSCC
T ss_pred CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCCC
Confidence 79999999999 45589999999999999999999999874 58999999999999999998764
No 62
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.63 E-value=2.1e-16 Score=101.23 Aligned_cols=62 Identities=26% Similarity=0.726 Sum_probs=56.8
Q ss_pred CCCCcccCCccccccce-EeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 7 TTQKCKACEKTVYLVDQ-LTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
..++|.+|+++|..++. +.++|+.||++||+|..|+++|.++.|+.++|++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46799999999987774 689999999999999999999988889999999999999999874
No 63
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.9e-16 Score=102.10 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=56.0
Q ss_pred CCCCcccCCccccccceEeeCCcccccccccccccccccc-CCCeeecCCeeeecccHHHHhh
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLK-LSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|. +..|+.+++++||..||.++++
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4689999999996 58899999999999999999999998 6689999999999999998875
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.5e-16 Score=103.80 Aligned_cols=65 Identities=28% Similarity=0.681 Sum_probs=58.3
Q ss_pred CCCCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCee--ecCCccccHhHHHhhhcCCC
Q 029735 105 TQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYV--AHEHRLYCRHHHNQLFKQKG 169 (189)
Q Consensus 105 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~--~~dg~~yC~~c~~~~~~~k~ 169 (189)
+.++|.+|+++|+..+.|.++++.||++||+|..|+++|....|+ .+||++||+.||.++|+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 348999999999988888999999999999999999999998887 47999999999999887643
No 65
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=111.73 Aligned_cols=62 Identities=21% Similarity=0.537 Sum_probs=56.1
Q ss_pred CCCCcccCCccccccceEeeCCcccccccccccccccccc--CCCeeecCCeeeecccHHHHhh
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLK--LSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
..++|.+|+++|...+.|.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3578999999998666799999999999999999999997 3579999999999999999874
No 66
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.62 E-value=4.5e-16 Score=118.31 Aligned_cols=61 Identities=30% Similarity=0.788 Sum_probs=57.8
Q ss_pred CCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC
T ss_pred CCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC
Confidence 4679999999987889999999999999999999999988899999999999999999998
No 67
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.6e-16 Score=99.24 Aligned_cols=63 Identities=13% Similarity=0.325 Sum_probs=56.9
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCC-CCCeeecCCccccHhHHHhhhcCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVIS-PSNYVAHEHRLYCRHHHNQLFKQKGN 170 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~-~~~~~~~dg~~yC~~c~~~~~~~k~~ 170 (189)
++|..|+++|.+ +.|.++++.||++||+|..|+++|. +..|+..++++||..||.++++.+-.
T Consensus 6 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~~ 69 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDSG 69 (73)
T ss_dssp CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSCC
T ss_pred CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccccc
Confidence 899999999997 5589999999999999999999998 56788999999999999998876544
No 68
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.6e-16 Score=105.88 Aligned_cols=69 Identities=20% Similarity=0.439 Sum_probs=62.8
Q ss_pred CCCccCCccccc-CceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCCC
Q 029735 107 DKCVACKKTVYP-IEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLD 175 (189)
Q Consensus 107 ~~C~~C~~~I~~-~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~~ 175 (189)
++|.+|+++|.. .+.+.++++.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~ 75 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKA 75 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCB
T ss_pred CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCc
Confidence 799999999985 566899999999999999999999988889999999999999999999999865443
No 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=1.2e-15 Score=97.92 Aligned_cols=61 Identities=21% Similarity=0.423 Sum_probs=56.1
Q ss_pred CCCccCCcccccCc-eeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcC
Q 029735 107 DKCVACKKTVYPIE-KVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQ 167 (189)
Q Consensus 107 ~~C~~C~~~I~~~~-~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~ 167 (189)
++|.+|+++|.+.+ .+.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 79999999999754 58899999999999999999999877899999999999999999954
No 70
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.60 E-value=5.8e-16 Score=99.17 Aligned_cols=60 Identities=33% Similarity=0.657 Sum_probs=55.9
Q ss_pred CCCccCCcccccCce-eeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhc
Q 029735 107 DKCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFK 166 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~ 166 (189)
++|.+|+++|.+.+. +.+.++.||++||+|..|+++|..+.|+.+||++||+.||.++||
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 799999999998776 579999999999999999999988889999999999999999985
No 71
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=109.46 Aligned_cols=68 Identities=13% Similarity=0.306 Sum_probs=63.2
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~ 174 (189)
++|.+|+++|.+++.+.++|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..+..
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~ 71 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHN 71 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCS
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCC
Confidence 78999999999877789999999999999999999999888999999999999999999999986544
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.59 E-value=4.2e-16 Score=98.17 Aligned_cols=59 Identities=24% Similarity=0.620 Sum_probs=54.0
Q ss_pred CCCcccCCccccc-cceEeeCCcccc--ccccccccccccccCCCeeecCCeeee-cccHHHH
Q 029735 8 TQKCKACEKTVYL-VDQLTADNKVYH--KACFRCHHCKGTLKLSNYCSFEGVLYC-KPHFDQL 66 (189)
Q Consensus 8 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~ 66 (189)
+++|.+|+++|.+ ++.|.++|+.|| ++||+|+.|+++|.+..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999987 478999999999 999999999999998899999999999 8998754
No 73
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6.4e-16 Score=109.30 Aligned_cols=68 Identities=15% Similarity=0.377 Sum_probs=61.5
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCC--CCeeecCCccccHhHHHhhhcC--CCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISP--SNYVAHEHRLYCRHHHNQLFKQ--KGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~--~~~~~~dg~~yC~~c~~~~~~~--k~~~~~~ 174 (189)
++|..|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~ 77 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGH 77 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSC
T ss_pred CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCC
Confidence 799999999998777899999999999999999999973 5689999999999999999999 8875543
No 74
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.2e-16 Score=99.97 Aligned_cols=60 Identities=20% Similarity=0.572 Sum_probs=54.6
Q ss_pred CCCCcccCCccccc----cceEeeCCccccccccccccccccccCCCeeecCCeeeecccHHHH
Q 029735 7 TTQKCKACEKTVYL----VDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQL 66 (189)
Q Consensus 7 ~~~~C~~C~~~I~~----~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (189)
..++|++|+++|.+ .+.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 46899999999973 3789999999999999999999999988899999999999999753
No 75
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.5e-15 Score=99.62 Aligned_cols=63 Identities=22% Similarity=0.481 Sum_probs=56.2
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccC-CCee-ecCCeeeecccHHHHhhcc
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKL-SNYC-SFEGVLYCKPHFDQLFKMT 70 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~cy~~~~~~~ 70 (189)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.. ..|. .+++++||+.||.+++++.
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~ 78 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGP 78 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTT
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCC
Confidence 4678999999997 888999999999999999999999975 5677 5899999999999999843
No 76
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=107.20 Aligned_cols=60 Identities=15% Similarity=0.411 Sum_probs=55.6
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCC--CCCeeecCCccccHhHHHhhhc
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVIS--PSNYVAHEHRLYCRHHHNQLFK 166 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~--~~~~~~~dg~~yC~~c~~~~~~ 166 (189)
++|.+|+++|.+.+.+.++++.||++||+|..|+++|. +..|+.++|++||+.||.++||
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 79999999999877789999999999999999999997 3579999999999999999986
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.57 E-value=1.7e-15 Score=107.25 Aligned_cols=69 Identities=22% Similarity=0.446 Sum_probs=60.6
Q ss_pred CCCccCCcccccCce-eeccCccccccCceeCCCCCcCCC-CCeeecCCccccHhHHHhhhcCCCCCCCCC
Q 029735 107 DKCVACKKTVYPIEK-VAVDGTSYHKACFRCTHGGCVISP-SNYVAHEHRLYCRHHHNQLFKQKGNFSQLD 175 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~-v~~~g~~~H~~Cf~C~~C~~~l~~-~~~~~~dg~~yC~~c~~~~~~~k~~~~~~~ 175 (189)
++|..|+++|.+.+. +.++++.||+.||+|..|+++|.. ..|+..+|++||..||.++|+++|.++.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCC
Confidence 389999999997554 589999999999999999999954 469999999999999999999999865544
No 78
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.57 E-value=1.6e-15 Score=114.41 Aligned_cols=67 Identities=16% Similarity=0.440 Sum_probs=60.9
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~ 174 (189)
++|..|+++|.+.+.+.++++.||++||+|..|+++|....| .+||++||+.||.++|+++|..+..
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~ 127 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQL 127 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCC
T ss_pred CcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCC
Confidence 799999999998766789999999999999999999998664 7899999999999999999986544
No 79
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.55 E-value=5.7e-15 Score=104.53 Aligned_cols=69 Identities=23% Similarity=0.557 Sum_probs=60.1
Q ss_pred CCcccCCccccccc-eEeeCCcccccccccccccccccc-CCCeeecCCeeeecccHHHHhhccCCCCCCC
Q 029735 9 QKCKACEKTVYLVD-QLTADNKVYHKACFRCHHCKGTLK-LSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 77 (189)
Q Consensus 9 ~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 77 (189)
++|.+|+++|...+ .+.++++.||+.||+|..|+++|. +..|+..++++||..||.++++++|..+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCC
Confidence 48999999998654 679999999999999999999994 4469999999999999999999888655433
No 80
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.53 E-value=8.4e-15 Score=104.58 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCC--CCeeecCCccccHhHHHhhhcC--CCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISP--SNYVAHEHRLYCRHHHNQLFKQ--KGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~--~~~~~~dg~~yC~~c~~~~~~~--k~~~~~~ 174 (189)
+.|..|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.+||+|||+.||.++|++ +|..+..
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~ 74 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDK 74 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCC
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCC
Confidence 789999999998766899999999999999999999963 5699999999999999999999 8875443
No 81
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.53 E-value=4.2e-15 Score=93.54 Aligned_cols=58 Identities=19% Similarity=0.549 Sum_probs=53.3
Q ss_pred CCCccCCcccccC-ceeeccCcccc--ccCceeCCCCCcCCCCCeeecCCcccc-HhHHHhh
Q 029735 107 DKCVACKKTVYPI-EKVAVDGTSYH--KACFRCTHGGCVISPSNYVAHEHRLYC-RHHHNQL 164 (189)
Q Consensus 107 ~~C~~C~~~I~~~-~~v~~~g~~~H--~~Cf~C~~C~~~l~~~~~~~~dg~~yC-~~c~~~~ 164 (189)
++|.+|+++|.+. +.|.++++.|| ++||+|..|+++|.+..|+.+||+||| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 7899999999974 56899999999 999999999999998889999999999 8998765
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.50 E-value=2.1e-14 Score=106.93 Aligned_cols=67 Identities=16% Similarity=0.415 Sum_probs=60.8
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhhcCCCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~~~k~~~~~~ 174 (189)
+.|..|+++|.+.+.+.++|+.||++||+|..|+++|.... +.+||++||+.||.++|+++|..+..
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~ 73 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQL 73 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCC
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccccccccccc
Confidence 78999999999876678999999999999999999999865 47899999999999999999986544
No 83
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=3.2e-14 Score=93.31 Aligned_cols=61 Identities=21% Similarity=0.481 Sum_probs=52.5
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCCCeeecCC-eeeecccHHHHhh
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEG-VLYCKPHFDQLFK 68 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~~~ 68 (189)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|..+.++..++ .+||..||.+++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 3579999999997 78999999999999999999999998776665555 5799999977654
No 84
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.43 E-value=4.2e-14 Score=107.07 Aligned_cols=68 Identities=13% Similarity=0.340 Sum_probs=61.1
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCC--CCeeecCCccccHhHHHhhhcC--CCCCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISP--SNYVAHEHRLYCRHHHNQLFKQ--KGNFSQL 174 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~--~~~~~~dg~~yC~~c~~~~~~~--k~~~~~~ 174 (189)
+.|..|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.+||++||+.||.++|++ +|..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~ 77 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQ 77 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCC
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCC
Confidence 789999999997766899999999999999999999985 5799999999999999999999 6875443
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.53 E-value=3e-08 Score=52.60 Aligned_cols=29 Identities=38% Similarity=0.879 Sum_probs=27.4
Q ss_pred CCCcccCCccccccceEeeCCcccccccc
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 36 (189)
+++|++|++.|+..|.+.++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 56899999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.53 E-value=3.5e-08 Score=52.31 Aligned_cols=28 Identities=50% Similarity=0.949 Sum_probs=26.9
Q ss_pred CCCccCCcccccCceeeccCccccccCc
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACF 134 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 134 (189)
++|+.|++.|++.|++.+.|+.||+.||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 7899999999999999999999999998
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.41 E-value=0.55 Score=31.50 Aligned_cols=96 Identities=18% Similarity=0.363 Sum_probs=55.8
Q ss_pred CCCCCcccCCccccccceEe--eCCccccccccccccccccccCCCeeecCCeeeecccHHHHhhccCCCCCCCCCCCcc
Q 029735 6 GTTQKCKACEKTVYLVDQLT--ADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTPKT 83 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~--~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 83 (189)
.....|..|+..=...+.|. .=++.||..|+.=. +. ....+..+|..|
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~-----~~----~~~~~~W~C~~C--------------------- 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA-----VT----PLKRAGWQCPEC--------------------- 54 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC-----CC----TTTSTTCCCTTT---------------------
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc-----cc----cccccCccCCcC---------------------
Confidence 34567999987632122232 23578888876422 11 123567788877
Q ss_pred ccccCccCcCCcccccccCCCCCCCCccCCcccccCcee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHH
Q 029735 84 VRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHH 161 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~ 161 (189)
..|..|++.-.+...+ ..-++.||..|..- +|.. ...+.-+|..|.
T Consensus 55 -----------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~ 102 (111)
T 2ysm_A 55 -----------------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCKNCR 102 (111)
T ss_dssp -----------------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCHHHH
T ss_pred -----------------------CcccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc----CCCCCcCCcCCc
Confidence 3577888765443333 34467899888632 2321 224677898885
Q ss_pred Hh
Q 029735 162 NQ 163 (189)
Q Consensus 162 ~~ 163 (189)
..
T Consensus 103 ~c 104 (111)
T 2ysm_A 103 IC 104 (111)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.71 E-value=0.2 Score=31.37 Aligned_cols=36 Identities=11% Similarity=0.313 Sum_probs=26.1
Q ss_pred CcCCCCCCCcccCCccccccceEeeCCccccccccc
Q 029735 2 ASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFR 37 (189)
Q Consensus 2 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~ 37 (189)
..|......|..|...|..+.....-+..||..|+.
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~ 44 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVA 44 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHH
T ss_pred hhccCCCCcCcchhhHcccCCccCCCCchhhHHHHH
Confidence 456777889999999997665544455667877763
No 89
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=89.35 E-value=0.41 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCccCCcccccCcee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhh
Q 029735 107 DKCVACKKTVYPIEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQL 164 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~ 164 (189)
..|..|++...+.+.| ..-.+.||..|.. .+|.. ...|.-+|..|-...
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-----ppl~~----~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLN-----PPVAE----PPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSS-----SCCSS----CCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccC-----CCccC----CCCCCeECccccchh
Confidence 4688888765544444 2445789988853 23322 235678899886543
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=84.84 E-value=0.7 Score=31.33 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=8.1
Q ss_pred cCCeeeecccHHHHh
Q 029735 53 FEGVLYCKPHFDQLF 67 (189)
Q Consensus 53 ~~g~~yC~~cy~~~~ 67 (189)
.=|..||..|..+..
T Consensus 31 ~CgH~fc~~Ci~~~~ 45 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSL 45 (133)
T ss_dssp TTCCEEEHHHHHHHH
T ss_pred CCCChhhHHHHHHHH
Confidence 345556666665543
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.08 E-value=2.6 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.548 Sum_probs=16.2
Q ss_pred CCcccCCccccccceEeeCCcccccccccccccccccc
Q 029735 9 QKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLK 46 (189)
Q Consensus 9 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~ 46 (189)
..|+.|+.+|.. .++. +.|..|++.+.
T Consensus 3 ~~CP~C~~~l~~------~~~~-----~~C~~C~~~~~ 29 (81)
T 2jrp_A 3 ITCPVCHHALER------NGDT-----AHCETCAKDFS 29 (81)
T ss_dssp CCCSSSCSCCEE------CSSE-----EECTTTCCEEE
T ss_pred CCCCCCCCcccc------CCCc-----eECccccccCC
Confidence 468888888742 2332 34677777653
No 92
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.89 E-value=2.5 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.2
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 8 ~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 8 YFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred cCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 4788888887754 34457899999999987763
No 93
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.73 E-value=3.5 Score=27.54 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=26.2
Q ss_pred CCCcccCCccccccceEeeC----CccccccccccccccccccCCCeeecCCeeeeccc
Q 029735 8 TQKCKACEKTVYLVDQLTAD----NKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPH 62 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (189)
...|..|+. .++.|.-+ .+.||..|+. |.. ...|..||..|
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 456888883 46665544 2578988764 322 23578888887
No 94
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=79.46 E-value=1.7 Score=28.67 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred CCCccCCcccccCceeeccCccccccCceeC---CCCCcC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCT---HGGCVI 143 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~---~C~~~l 143 (189)
..|+.|..+|...|.. .+|.. |.|. .|.+..
T Consensus 38 k~Cp~C~~~V~rVe~~-~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 38 KMCPGCSDPVQRIEQC-TRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp CBCTTTCCBCSEEEEE-EGGGC-----CCCCCCCCCCCCC
T ss_pred CCCcCcCCeeeeeEEe-ccCCE-----EECCCCCCHHHHh
Confidence 6899999999876643 34555 3454 466554
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=79.06 E-value=1.5 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=20.9
Q ss_pred eCCCCCcCCCCCeeecCCcccc-HhHHHh
Q 029735 136 CTHGGCVISPSNYVAHEHRLYC-RHHHNQ 163 (189)
Q Consensus 136 C~~C~~~l~~~~~~~~dg~~yC-~~c~~~ 163 (189)
|..|+..++...-+.+||+.|| +.|...
T Consensus 10 C~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 10 CEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp STTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred CCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 5677777776667788899998 777654
No 96
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=78.63 E-value=0.93 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=22.7
Q ss_pred ccccccccccCCCeeecCCeeee-cccHHH
Q 029735 37 RCHHCKGTLKLSNYCSFEGVLYC-KPHFDQ 65 (189)
Q Consensus 37 ~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~ 65 (189)
.|..|+..++...-+.++|++|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46788888877777889999999 677643
No 97
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.04 E-value=1.6 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCCCccCCcccccCceeeccCccccccCc
Q 029735 105 TQDKCVACKKTVYPIEKVAVDGTSYHKACF 134 (189)
Q Consensus 105 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf 134 (189)
....|+.|...|..+..-..-+..||..|+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 347899999999865533445667787776
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.58 E-value=2.3 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=23.2
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
+.|..|...+.+. ....=|..||..|..+.+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALL 46 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHH
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHH
Confidence 6788888877543 335677889999998775
No 99
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.93 E-value=2.6 Score=25.37 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=23.7
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+.+......=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 3678888887764332236778899999877653
No 100
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=73.89 E-value=0.99 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.7
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHH
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQ 65 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 65 (189)
=.+|..|+.......-...+|+++|.+|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4689999999987777788999999999865
No 101
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.15 E-value=4.6 Score=23.62 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=21.1
Q ss_pred cccccccc-cccCCC---eeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKG-TLKLSN---YCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~-~L~~~~---f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|.. .+.+.. ....=|..||..|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH
Confidence 45777776 554332 2345677889999887753
No 102
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=72.07 E-value=5.3 Score=26.73 Aligned_cols=58 Identities=12% Similarity=0.287 Sum_probs=35.8
Q ss_pred CCCCcccCCccccccceEeeCCccccccccccccccccccCC----C--eeecCCeeeecccHHHHh
Q 029735 7 TTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLS----N--YCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~----~--f~~~~g~~yC~~cy~~~~ 67 (189)
....|+.|.+.+........ ..-..=+.|..|...+... . ....=|..||..|..+..
T Consensus 47 ~~~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 110 (133)
T 4ap4_A 47 NANTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 110 (133)
T ss_dssp TCSBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH
T ss_pred hCCCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH
Confidence 34589999998864443221 1223446688887777532 1 234567889999987654
No 103
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.51 E-value=3.1 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=23.0
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
+.|..|...+... ....=|..||..|..+..
T Consensus 21 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 21 VICPICLDILQKP-VTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CBCTTTCSBCSSE-EECTTCCEEEHHHHHHHC
T ss_pred CEeccCCcccCCe-EEcCCCChhhHHHHHHHH
Confidence 6788888877543 334678889999998765
No 104
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.69 E-value=2.1 Score=23.66 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=15.6
Q ss_pred CeeecCCccccHhHHHhhh
Q 029735 147 NYVAHEHRLYCRHHHNQLF 165 (189)
Q Consensus 147 ~~~~~dg~~yC~~c~~~~~ 165 (189)
.|+..+-+|+|.+||+++-
T Consensus 21 F~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHH
T ss_pred eEEEecCccchHHHHHHHh
Confidence 3566899999999998764
No 105
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.28 E-value=2.9 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=13.7
Q ss_pred CCCcccCCccccccceE--eeCCcccccccc
Q 029735 8 TQKCKACEKTVYLVDQL--TADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~--~~~~~~~H~~CF 36 (189)
...|..|...+..++.+ ..=+..||..|+
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 34566666665433322 123444555554
No 106
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=70.21 E-value=2.5 Score=24.46 Aligned_cols=41 Identities=17% Similarity=0.437 Sum_probs=26.8
Q ss_pred CCCcccCCccccccc------eEeeCCcccccccc--------ccccccccccCC
Q 029735 8 TQKCKACEKTVYLVD------QLTADNKVYHKACF--------RCHHCKGTLKLS 48 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~------~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 48 (189)
...|+.|...+.... .+..-|..||..|+ +|-.|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456888888774321 34456677888877 577777777544
No 107
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=69.63 E-value=2.8 Score=24.75 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCCCcccCCccccccceEeeCCcccccccc--------cccccccccc
Q 029735 6 GTTQKCKACEKTVYLVDQLTADNKVYHKACF--------RCHHCKGTLK 46 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF--------~C~~C~~~L~ 46 (189)
.....|+.|...+.....+..=|..||..|+ +|-.|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3456788888887432244445666777776 3667766664
No 108
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=68.20 E-value=4.6 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.569 Sum_probs=23.3
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+........=|..||..|..+.+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 678888887754322245678899999877654
No 109
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.06 E-value=2.9 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=15.4
Q ss_pred CCCcccCCccccccc------eEeeCCcccccccc
Q 029735 8 TQKCKACEKTVYLVD------QLTADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~------~~~~~~~~~H~~CF 36 (189)
...|..|...+.... .+..-|..||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci 49 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHH
Confidence 456777777664221 23334555666665
No 110
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=66.58 E-value=4.7 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=24.2
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+.+......=|..||..|..+...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 3678888888764322236788999999877653
No 111
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=65.86 E-value=5.1 Score=28.39 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.6
Q ss_pred cccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 34 ACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
.=+.|..|...+.+......=|..||..|..+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 34789999888865332236788999999987764
No 112
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.82 E-value=4.6 Score=22.58 Aligned_cols=30 Identities=13% Similarity=0.504 Sum_probs=17.0
Q ss_pred CCCCcccCCccccccc---eEeeCCcccccccc
Q 029735 7 TTQKCKACEKTVYLVD---QLTADNKVYHKACF 36 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~---~~~~~~~~~H~~CF 36 (189)
....|..|...+..++ .+..=+..||..|+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci 36 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCY 36 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHH
Confidence 3457888888774322 22234556666665
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.57 E-value=3.6 Score=25.55 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=27.2
Q ss_pred CCCCCcccCCccccc-----------cc---eEeeCCccccccccc--------ccccccccc
Q 029735 6 GTTQKCKACEKTVYL-----------VD---QLTADNKVYHKACFR--------CHHCKGTLK 46 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~-----------~~---~~~~~~~~~H~~CF~--------C~~C~~~L~ 46 (189)
.....|+.|...+.. ++ .+..-+..||..|+. |-.|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 446678899888843 12 222356778988874 777877764
No 114
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.30 E-value=4 Score=27.24 Aligned_cols=31 Identities=19% Similarity=0.537 Sum_probs=21.3
Q ss_pred cccccccccccCCCeee-cCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLSNYCS-FEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~ 67 (189)
+.|..|...+... ... .=|..||..|..+..
T Consensus 23 ~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 23 LRCSRCTNILREP-VCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp TSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGT
T ss_pred CCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHh
Confidence 6788887777543 333 567888888886654
No 115
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=64.87 E-value=3.1 Score=24.74 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=27.1
Q ss_pred CCCCcccCCcccccc----c--eEeeCCcccccccc--------ccccccccccCC
Q 029735 7 TTQKCKACEKTVYLV----D--QLTADNKVYHKACF--------RCHHCKGTLKLS 48 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~----~--~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 48 (189)
....|+.|...+... + .+..=|..||..|+ +|-.|+..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 456788888877432 1 34445667777777 677777776543
No 116
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=62.17 E-value=6.8 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.0
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
|.|..|...|.+. ....-|..||..|..+.+.
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHH
Confidence 7889998888643 4467889999999987654
No 117
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=62.17 E-value=6.8 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=23.9
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHh
Confidence 7888888887543 4456788999999877653
No 118
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=60.61 E-value=5.5 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCCCCCCccCCcccccCceeeccCccccccCc----------eeCCCCCcCCC
Q 029735 103 AGTQDKCVACKKTVYPIEKVAVDGTSYHKACF----------RCTHGGCVISP 145 (189)
Q Consensus 103 ~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~Cf----------~C~~C~~~l~~ 145 (189)
.+....|..|...|..+.+=.--+..||..|+ +|..|+..+..
T Consensus 177 ~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 33458899999999865321224677888887 56667666554
No 119
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=60.58 E-value=7.6 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=23.5
Q ss_pred cccccccccccCCCeeec-CCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSF-EGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+.+ ..... =|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 678888887754 33444 488999999987764
No 120
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=60.17 E-value=2.5 Score=31.57 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=21.4
Q ss_pred ceeCCCCCcCCCCCeeecCCccccHhHHHh
Q 029735 134 FRCTHGGCVISPSNYVAHEHRLYCRHHHNQ 163 (189)
Q Consensus 134 f~C~~C~~~l~~~~~~~~dg~~yC~~c~~~ 163 (189)
..|..|+-......-...||+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 457778766554444557899999999865
No 121
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=59.60 E-value=7.9 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.2
Q ss_pred ccccccccccccCCCeee-cCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCS-FEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+.+ .... .=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 3778888887754 3343 6788999999877653
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.48 E-value=8.7 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=25.0
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+.+ .....=|..||..|..+...
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh
Confidence 3788999888854 34457889999999987654
No 123
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.33 E-value=14 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=8.5
Q ss_pred CCCCcccCCccc
Q 029735 7 TTQKCKACEKTV 18 (189)
Q Consensus 7 ~~~~C~~C~~~I 18 (189)
..++|..|+..|
T Consensus 15 ~~qiCqiCGD~V 26 (93)
T 1weo_A 15 DGQFCEICGDQI 26 (93)
T ss_dssp SSCBCSSSCCBC
T ss_pred CCCccccccCcc
Confidence 346788887777
No 124
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=57.17 E-value=11 Score=24.42 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=26.9
Q ss_pred ccccccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 33 KACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
+.=|.|..|...+.+ ......|..||..|..+.+
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHH
Confidence 566999999988864 4455689999999987765
No 125
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.69 E-value=8.9 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=22.6
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 577888777754 33456678899999877653
No 126
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.57 E-value=7.4 Score=24.57 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=18.4
Q ss_pred CcccCCccccccceEeeCCccccccccccc
Q 029735 10 KCKACEKTVYLVDQLTADNKVYHKACFRCH 39 (189)
Q Consensus 10 ~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~ 39 (189)
.|.-|.+.+.+..+|.--.-.-|+-||-|+
T Consensus 17 ~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred EeecchhhhccCceeeCCCccCCeeecccc
Confidence 566666666555556555555666666665
No 127
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.00 E-value=9.6 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHH
Confidence 6788888877543 3345678899999877653
No 128
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=55.64 E-value=11 Score=25.15 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=24.1
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+... ....=|..||..|..+.+.
T Consensus 52 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 52 TFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHh
Confidence 37889998887543 3446788899999877653
No 129
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=54.68 E-value=6.3 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=12.1
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|.-++
T Consensus 20 RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 20 RSSCKTCKSVINKEN 34 (114)
T ss_dssp CCBCSSSCCBCCSSS
T ss_pred CCCchhhCCccCCCC
Confidence 368999999997665
No 130
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=54.65 E-value=12 Score=25.65 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=22.4
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
+.|..|...+.. .....=|..||..|..+.+
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHH
Confidence 578888887754 3345677899999987654
No 131
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.36 E-value=8.3 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.563 Sum_probs=14.2
Q ss_pred CCCcccCCccccccceEe--eCCcccccccc
Q 029735 8 TQKCKACEKTVYLVDQLT--ADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~--~~~~~~H~~CF 36 (189)
...|..|...+.....+. .=+..||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci 45 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCL 45 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHH
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHH
Confidence 345777766664333322 23444555554
No 132
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=52.90 E-value=12 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=16.4
Q ss_pred CCCcccCCccccccceE--eeCCcccccccc
Q 029735 8 TQKCKACEKTVYLVDQL--TADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~--~~~~~~~H~~CF 36 (189)
...|..|...+..++.+ ..=+..||..|+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 44 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCV 44 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHH
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHH
Confidence 45688887776443322 223455666665
No 133
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=52.88 E-value=7.6 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=19.0
Q ss_pred CCCCcccCCccccccceEee---CCcccccccc
Q 029735 7 TTQKCKACEKTVYLVDQLTA---DNKVYHKACF 36 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~---~~~~~H~~CF 36 (189)
....|..|...+..++.+.. =+..||..|+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 36 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECV 36 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHH
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHH
Confidence 45679999888865443221 4556777766
No 134
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.73 E-value=9.6 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=23.2
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHH
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHH
Confidence 6788888777543 3455678899999887654
No 135
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=52.71 E-value=12 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=23.6
Q ss_pred cccccccccccCCCeeec-CCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSF-EGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~ 68 (189)
|.|..|...+.+ ..... =|..||..|..+.+.
T Consensus 14 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECSS-CEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHH
Confidence 788999888854 33445 389999999877653
No 136
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=52.66 E-value=6.6 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.506 Sum_probs=19.3
Q ss_pred CCCCCCcccCCccccccc-eEeeC---Cccccccc
Q 029735 5 AGTTQKCKACEKTVYLVD-QLTAD---NKVYHKAC 35 (189)
Q Consensus 5 ~~~~~~C~~C~~~I~~~~-~~~~~---~~~~H~~C 35 (189)
+.....|..|++++.++. +|.-+ .+-||..|
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 344568999999986544 45555 56688765
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=52.65 E-value=15 Score=27.89 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=27.6
Q ss_pred cccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 32 HKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 32 H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
-+.-|.|..|...+.+ ......|..||..|..+...
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 3467899999988854 44556899999999877653
No 138
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.61 E-value=11 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=22.5
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+... ....=|..||..|..+...
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHH
Confidence 5788887777543 3345678899999887764
No 139
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=51.26 E-value=5.4 Score=26.47 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=11.7
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|.-++
T Consensus 25 Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 25 RASCKKCSESIPKDS 39 (106)
T ss_dssp CCBCSSSCCBCCTTC
T ss_pred CCcchhhCCccCCCC
Confidence 358999999996555
No 140
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=50.48 E-value=10 Score=23.70 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=26.5
Q ss_pred ccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 33 KACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.=|.|..|...+.+ ......|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 445899999888854 34456899999999877653
No 141
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.28 E-value=9.2 Score=22.54 Aligned_cols=37 Identities=14% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCCcccCCccccccceEeeCCccccccccc--------ccccccccc
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACFR--------CHHCKGTLK 46 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~--------C~~C~~~L~ 46 (189)
...|..|...+.. .+..=+..||..|+. |-.|+..+.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 4578888887743 444455566666643 555555553
No 142
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=49.94 E-value=16 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=24.6
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHH
Confidence 3788999887754 33456788999999887764
No 143
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.83 E-value=27 Score=20.87 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.3
Q ss_pred CCCccCCcccccCcee--eccCccccccCce--------eCCCCCcCCC
Q 029735 107 DKCVACKKTVYPIEKV--AVDGTSYHKACFR--------CTHGGCVISP 145 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~--------C~~C~~~l~~ 145 (189)
..|..|.+.+.....+ ..-+..||..|+. |-.|...+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 6899998887654432 3567788888863 6666666554
No 144
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.31 E-value=12 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=14.7
Q ss_pred CCCcccCCccccccceEeeCCcccccccc
Q 029735 8 TQKCKACEKTVYLVDQLTADNKVYHKACF 36 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 36 (189)
...|..|...+. ..++..-+..||..|+
T Consensus 15 ~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci 42 (71)
T 2d8t_A 15 VPECAICLQTCV-HPVSLPCKHVFCYLCV 42 (71)
T ss_dssp CCBCSSSSSBCS-SEEEETTTEEEEHHHH
T ss_pred CCCCccCCcccC-CCEEccCCCHHHHHHH
Confidence 346777777663 3333334445555553
No 145
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.16 E-value=19 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=22.6
Q ss_pred cccccccccccCC---CeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLS---NYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~---~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+... .....=|..||..|..+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 6678887777542 22334678899999987764
No 146
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=48.37 E-value=13 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=18.5
Q ss_pred cccccccccccCC--Ceee-cCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLS--NYCS-FEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~--~f~~-~~g~~yC~~cy~~~~ 67 (189)
+.|..|-.++... .+.. .=|..+|..|+.+..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHH
Confidence 4566666666322 2211 246678888887764
No 147
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=48.21 E-value=18 Score=26.38 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=27.8
Q ss_pred ccccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 33 KACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 567999999988864 45567999999999877654
No 148
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=47.47 E-value=22 Score=22.92 Aligned_cols=34 Identities=6% Similarity=-0.187 Sum_probs=26.1
Q ss_pred ccccccccccccccCCCeeecCC-eeeecccHHHHh
Q 029735 33 KACFRCHHCKGTLKLSNYCSFEG-VLYCKPHFDQLF 67 (189)
Q Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~~ 67 (189)
+.=|.|..|...+.+ ......| ..||..|..+.+
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l 54 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHL 54 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHH
Confidence 456899999888854 3445677 999999987765
No 149
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.51 E-value=24 Score=20.91 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=19.3
Q ss_pred ccccccCceeCCCCCc-CCCCCeeec--CCccccHhHHHhh
Q 029735 127 TSYHKACFRCTHGGCV-ISPSNYVAH--EHRLYCRHHHNQL 164 (189)
Q Consensus 127 ~~~H~~Cf~C~~C~~~-l~~~~~~~~--dg~~yC~~c~~~~ 164 (189)
..+|+ ..|..|+.. |.+..|.-. .+.-+|..||.+.
T Consensus 7 ~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 7 GVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 34454 556666543 443333211 2345799999874
No 150
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.75 E-value=11 Score=22.11 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=28.7
Q ss_pred CCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...| .|+++- .+++|.-.+ ..||..|.. |... ..++.||..|..
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccC
Confidence 4456 798875 467776665 458988865 3221 247889998854
No 151
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.30 E-value=23 Score=21.54 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=33.7
Q ss_pred CcCCCCCCCcccCCccc--cccceEee--CCccccccccccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 2 ASFAGTTQKCKACEKTV--YLVDQLTA--DNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 2 ~~~~~~~~~C~~C~~~I--~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
-+-......|..|++.= ..++.|.- =++.||..|..=. .+.+|..||..|..+..
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----------~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----------YIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----------SCCSSCCCCHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----------cCCCCCcCCccCcCcCc
Confidence 34445567899998763 22334433 3357888775421 13467899999987654
No 152
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.12 E-value=13 Score=22.02 Aligned_cols=44 Identities=23% Similarity=0.521 Sum_probs=29.1
Q ss_pred CCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...| .|+++- .+++|.-.+ .-||..|.. |... ..++.||..|..
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCccc
Confidence 4457 798875 467776665 668988765 3221 247889998853
No 153
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=44.09 E-value=8.7 Score=25.94 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.0
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|.-++
T Consensus 15 RA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGV 29 (117)
T ss_dssp CEECTTSSCEECTTC
T ss_pred CccchhhCcccCCCC
Confidence 458999999997665
No 154
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=43.53 E-value=32 Score=20.83 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=29.3
Q ss_pred CCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...| .|+++- .+++|.-.+ ..||..|.. |... ..++.||..|..
T Consensus 16 ~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 64 (71)
T ss_dssp CCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTSS
T ss_pred CCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCCc
Confidence 4568 698875 467776665 568988865 3221 247899999964
No 155
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.47 E-value=24 Score=21.83 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=19.0
Q ss_pred CCCCcccCCccccccceEee-C-----Ccccccccc
Q 029735 7 TTQKCKACEKTVYLVDQLTA-D-----NKVYHKACF 36 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~-~-----~~~~H~~CF 36 (189)
....|..|......++.+.. - ...||..|+
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 35689999877654443322 1 267888886
No 156
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.17 E-value=13 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.2
Q ss_pred cccccccccccCCCeeecCCee-eecccHHH
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVL-YCKPHFDQ 65 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~ 65 (189)
+.|..|...+.+..+ ..=|.. +|..|..+
T Consensus 26 ~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~ 55 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEA 55 (75)
T ss_dssp HSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH
T ss_pred CCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC
Confidence 467777766654333 344566 89998854
No 157
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=43.10 E-value=12 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=11.7
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|..++
T Consensus 38 RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 38 RASCKKCSESIPKDS 52 (116)
T ss_dssp CCBCTTTCCBCCTTS
T ss_pred CccCcccCCccCCCC
Confidence 468999999996554
No 158
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=42.52 E-value=10 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHH
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQL 66 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (189)
|.|..|...+.. .....=|..||..|..+.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHH
Confidence 677888777643 333456777888887544
No 159
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=42.33 E-value=12 Score=23.62 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=12.4
Q ss_pred CCcccCCccccccceE--eeCCcccccccc
Q 029735 9 QKCKACEKTVYLVDQL--TADNKVYHKACF 36 (189)
Q Consensus 9 ~~C~~C~~~I~~~~~~--~~~~~~~H~~CF 36 (189)
..|..|...+..++.+ ..=+..||..|+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 3466666555433322 123344554444
No 160
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=42.17 E-value=7.5 Score=26.07 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=11.8
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|.-++
T Consensus 19 Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQ 33 (111)
T ss_dssp CCBCTTTCCBCCTTC
T ss_pred CccccccCCCccCCc
Confidence 468999999996554
No 161
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=41.73 E-value=16 Score=22.13 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCccCCcccccCceee--ccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhh
Q 029735 107 DKCVACKKTVYPIEKVA--VDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLF 165 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~--~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~ 165 (189)
..|..|+++-.+..+|. .-..-||..|.. .++. ...++..||..|..++-
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-----~~~~----~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAA----PPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-----CSSC----CCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-----CCcc----CCCCCCEEChhccCchh
Confidence 56999988764333343 234567877642 1111 11246788999976653
No 162
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.53 E-value=12 Score=26.03 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.0
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|..|++.|.-++
T Consensus 27 RA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 27 RSTCKGCMEKIEKGQ 41 (134)
T ss_dssp CCBCSSSCCBCCTTS
T ss_pred CccchhcCCcccCCC
Confidence 368999999997665
No 163
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.50 E-value=16 Score=20.32 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=25.7
Q ss_pred CcccCCccccccceEee--CCccccccccccccccccccCCCeeecCCeeeecccH
Q 029735 10 KCKACEKTVYLVDQLTA--DNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHF 63 (189)
Q Consensus 10 ~C~~C~~~I~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (189)
.|..|++.-..++.|.- =++.||..|.. -+|.. ..++..||..|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~-----p~l~~----~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLR-----PALYE----VPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHC-----TTCCS----CCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCC-----CCcCC----CCCCcEECcCcc
Confidence 47888876433344433 33568887743 12321 235688898874
No 164
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.20 E-value=31 Score=22.14 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=28.4
Q ss_pred CCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...| .|+++- .+++|.-.+ .-||..|.. |... ..+++||..|..
T Consensus 36 ~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~~ 84 (91)
T 1weu_A 36 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 84 (91)
T ss_dssp CBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTCC
T ss_pred CcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCccC
Confidence 3457 898876 466666555 457987764 3221 247889999854
No 165
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.59 E-value=12 Score=21.93 Aligned_cols=44 Identities=23% Similarity=0.525 Sum_probs=28.7
Q ss_pred CCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...| .|+++- .+++|.-.+ .-||..|.. |... ..++.||..|-.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccC
Confidence 4456 798875 467776666 568988765 3221 236789988853
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.48 E-value=12 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=11.3
Q ss_pred CCeeeecccHHHHh
Q 029735 54 EGVLYCKPHFDQLF 67 (189)
Q Consensus 54 ~g~~yC~~cy~~~~ 67 (189)
++.+||..||.+.-
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 56799999997653
No 167
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=37.99 E-value=8.2 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.524 Sum_probs=25.7
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=|.|..|...|... ....=|..||..|..+...
T Consensus 31 ~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 31 KYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred CcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 47899999888543 5567889999999987653
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.95 E-value=6.9 Score=25.62 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=19.5
Q ss_pred CCCccCCcccccCceeeccCccccccCceeCCCCCcCCCC
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPS 146 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf~C~~C~~~l~~~ 146 (189)
..|+.|++++. .+.+-|.. =|-|..|+..++..
T Consensus 62 a~CPdC~q~Le---vLkACGAv----dYFC~~chgLiSKk 94 (101)
T 2jne_A 62 ALCPDCHQPLQ---VLKACGAV----DYFCQHGHGLISKK 94 (101)
T ss_dssp EECTTTCSBCE---EEEETTEE----EEEETTTTEEECTT
T ss_pred ccCcchhhHHH---HHHHhcCc----chhhccCCceeecc
Confidence 57888888874 35554421 14577777666543
No 169
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.24 E-value=28 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.2
Q ss_pred ccccccccccccCCCeee-cCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCS-FEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 68 (189)
=|.|..|...+.+ .... ..|..||..|..+.+.
T Consensus 7 ~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 7 GFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred EeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 3889999888864 4445 5899999999877654
No 170
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=36.03 E-value=21 Score=21.38 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCCcccCCccccccceEee--CCccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTA--DNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...|..|++ .++.|.- =++.||..|+. -+|. .+-++..||..|..
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~-----P~l~----~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTHCAAAFHWRCHF-----PAGT----SRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSC---CTTCEECSSSCCEECHHHHC-----TTTC----CCCSSSCCCTTTTT
T ss_pred CCCcCCCCC---CCeEEECCCCCCceecccCC-----CccC----cCCCCCEECccccC
Confidence 457999986 3454432 44678887742 2232 23467899999953
No 171
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.94 E-value=12 Score=24.63 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCCccCCcccccCceeeccCccccccCc---------eeCCCCCcCCCCCeeecCCccccH
Q 029735 107 DKCVACKKTVYPIEKVAVDGTSYHKACF---------RCTHGGCVISPSNYVAHEHRLYCR 158 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v~~~g~~~H~~Cf---------~C~~C~~~l~~~~~~~~dg~~yC~ 158 (189)
-.|..|+.||..-.++..-...|..+|. .|..|..++..-.....++...|.
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~ 62 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS 62 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence 3589999999765566666666666666 477788877653344455555565
No 172
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.54 E-value=15 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=7.8
Q ss_pred CCCccCCcccc
Q 029735 107 DKCVACKKTVY 117 (189)
Q Consensus 107 ~~C~~C~~~I~ 117 (189)
..|+.|.+.+.
T Consensus 38 ~~CP~Cr~~~~ 48 (56)
T 1bor_A 38 MQCPICQAPWP 48 (56)
T ss_dssp SSCSSCCSSSS
T ss_pred CCCCcCCcEee
Confidence 56777877765
No 173
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.21 E-value=24 Score=21.27 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=18.0
Q ss_pred CCCcccCCccccccc---eEeeCCcccc
Q 029735 8 TQKCKACEKTVYLVD---QLTADNKVYH 32 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~---~~~~~~~~~H 32 (189)
...|.-|+.+|+++. +|..+|+.|+
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 467888999998875 3555666665
No 174
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.69 E-value=24 Score=20.13 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=23.7
Q ss_pred cccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
+.|..|...+.+ .....=|..||..|..+.+.
T Consensus 21 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 678888887754 33446788899999887764
No 175
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=33.37 E-value=21 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCcccCCccccccc---eEeeCCcccc
Q 029735 9 QKCKACEKTVYLVD---QLTADNKVYH 32 (189)
Q Consensus 9 ~~C~~C~~~I~~~~---~~~~~~~~~H 32 (189)
..|.-|+.+|+++. +|..+|+.|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 56888888888775 3455666665
No 176
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=32.65 E-value=17 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.3
Q ss_pred ccccccccccccc
Q 029735 34 ACFRCHHCKGTLK 46 (189)
Q Consensus 34 ~CF~C~~C~~~L~ 46 (189)
.|+.|+.|...|-
T Consensus 6 sclvcaacsvell 18 (31)
T 2lbz_A 6 SCLVCAACSVELL 18 (31)
T ss_dssp GGGGGGGCCSCSG
T ss_pred HHHHHHHhHHHHH
Confidence 5889999987763
No 177
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.59 E-value=26 Score=21.02 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=8.4
Q ss_pred CCCccCCcccc
Q 029735 107 DKCVACKKTVY 117 (189)
Q Consensus 107 ~~C~~C~~~I~ 117 (189)
.+|..|++.+.
T Consensus 16 ~rC~~C~kkvg 26 (64)
T 1wfh_A 16 NRCTVCRKRVG 26 (64)
T ss_dssp CCCTTTCCCCC
T ss_pred CcChhhCCccC
Confidence 68888888764
No 178
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.81 E-value=39 Score=20.77 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=12.0
Q ss_pred CcccCCccccccceEee--CCcccccccc
Q 029735 10 KCKACEKTVYLVDQLTA--DNKVYHKACF 36 (189)
Q Consensus 10 ~C~~C~~~I~~~~~~~~--~~~~~H~~CF 36 (189)
.|..|++.-..++.|.- =++.||..|+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl 56 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCL 56 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCcccccccc
Confidence 35555554323333322 2245666553
No 179
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.28 E-value=79 Score=20.00 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCCccCCcccccCcee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhh
Q 029735 107 DKCVACKKTVYPIEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLF 165 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~ 165 (189)
..|..|++.-....+| ..-.+.||..|+. .+|.. +..|.-||..|-.+..
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~~----~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLPE----IPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCSS----CCSSCCCCHHHHHHHH
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCccc----CCCCCcCCccCcCccc
Confidence 5799998875433333 2345779988753 23321 2356789999977654
No 180
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=30.78 E-value=17 Score=27.64 Aligned_cols=16 Identities=13% Similarity=0.600 Sum_probs=10.0
Q ss_pred CCCCCCCcccCCcccc
Q 029735 4 FAGTTQKCKACEKTVY 19 (189)
Q Consensus 4 ~~~~~~~C~~C~~~I~ 19 (189)
|.+....|..|...|.
T Consensus 176 ~~~~i~~C~iC~~iv~ 191 (238)
T 3nw0_A 176 YPDAVKICNICHSLLI 191 (238)
T ss_dssp CTTTCCBCTTTCSBCS
T ss_pred cCCCCCcCcchhhHHh
Confidence 3344566777777764
No 181
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=30.66 E-value=54 Score=22.83 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=20.2
Q ss_pred cccccccccccCC---Ce--eecCCeeeecccHHHHh
Q 029735 36 FRCHHCKGTLKLS---NY--CSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 36 F~C~~C~~~L~~~---~f--~~~~g~~yC~~cy~~~~ 67 (189)
+.|+.|+..+... .. ...-+...|..|+....
T Consensus 15 i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~ 51 (142)
T 2lbm_A 15 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYM 51 (142)
T ss_dssp CBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHH
T ss_pred CEecCCCCccccccccchhcCCCccccccHHHHHHHh
Confidence 6788888877421 12 22356788999986543
No 182
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=30.27 E-value=44 Score=19.32 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.8
Q ss_pred cccccccccccCCCeee-cCCeeeecccHHHHhh
Q 029735 36 FRCHHCKGTLKLSNYCS-FEGVLYCKPHFDQLFK 68 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 68 (189)
|.|..++..+.+. ... .+|..|+..+..+.+.
T Consensus 4 ~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~ 36 (61)
T 2bay_A 4 MLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVK 36 (61)
T ss_dssp CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHH
T ss_pred EEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHH
Confidence 7888888888643 455 7999999999877653
No 183
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.09 E-value=43 Score=20.18 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=31.1
Q ss_pred CCCCCcccCCccccccceEeeCC-----ccccccccccccccccccCCCeeecCCeeeecccHHHHh
Q 029735 6 GTTQKCKACEKTVYLVDQLTADN-----KVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLF 67 (189)
Q Consensus 6 ~~~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 67 (189)
.....|. |+++- .+++|.-++ .-||..|.. |... ..+..||..|-....
T Consensus 4 ~~~~yC~-C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 4 GSSGYCI-CNQVS-YGEMVGCDNQDCPIEWFHYGCVG-------LTEA----PKGKWYCPQCTAAMK 57 (70)
T ss_dssp SCCCCST-TSCCC-CSSEECCSCTTCSCCCEEHHHHT-------CSSC----CSSCCCCHHHHHHHH
T ss_pred CCCeEEE-cCCCC-CCCEeEeCCCCCCccCCcccccc-------cCcC----CCCCEECCCCCcccc
Confidence 3445675 88874 467776665 457987754 3221 257899999976543
No 184
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.47 E-value=31 Score=21.82 Aligned_cols=53 Identities=19% Similarity=0.384 Sum_probs=31.7
Q ss_pred CCCccCCccccc--Ccee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhh
Q 029735 107 DKCVACKKTVYP--IEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQL 164 (189)
Q Consensus 107 ~~C~~C~~~I~~--~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~ 164 (189)
..|..|++.-.. ...| ..-++.||..|+. -+|........+|.-||..|-.+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccchh
Confidence 579999876432 2333 2446889988752 233311112356788999997654
No 185
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.33 E-value=47 Score=19.25 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=27.9
Q ss_pred CCCCcccCCccccccceEeeC--CccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 7 TTQKCKACEKTVYLVDQLTAD--NKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 7 ~~~~C~~C~~~I~~~~~~~~~--~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
....|..|++. ++.|.-. .+.||..|..= +|. ...++..||..|..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p-----~l~----~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDP-----DME----KAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCT-----TCC----SCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCC-----CCC----CCCCCceECccccc
Confidence 34679999873 5555333 35688776431 222 13467899999864
No 186
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.25 E-value=34 Score=21.08 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.5
Q ss_pred CCCccCCcccc
Q 029735 107 DKCVACKKTVY 117 (189)
Q Consensus 107 ~~C~~C~~~I~ 117 (189)
.+|..|++.+.
T Consensus 26 ~RC~~C~kkvg 36 (74)
T 1wfp_A 26 TRCLSCNKKVG 36 (74)
T ss_dssp CBCSSSCCBCT
T ss_pred ccchhhcCccc
Confidence 67888887764
No 187
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.86 E-value=27 Score=20.92 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.8
Q ss_pred CCCccCCcccc
Q 029735 107 DKCVACKKTVY 117 (189)
Q Consensus 107 ~~C~~C~~~I~ 117 (189)
.+|..|++.+.
T Consensus 16 ~rC~~C~kkvg 26 (64)
T 1wg2_A 16 NRCFSCNKKVG 26 (64)
T ss_dssp CSCTTTCCCCT
T ss_pred CcChhhCCccc
Confidence 68999988764
No 188
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=26.77 E-value=38 Score=22.15 Aligned_cols=13 Identities=15% Similarity=0.700 Sum_probs=9.4
Q ss_pred CCCCcccCCcccc
Q 029735 7 TTQKCKACEKTVY 19 (189)
Q Consensus 7 ~~~~C~~C~~~I~ 19 (189)
....|+.|...+.
T Consensus 36 ~~d~CaIC~~~~~ 48 (106)
T 3dpl_R 36 VVDNCAICRNHIM 48 (106)
T ss_dssp CSCCCSSSCSCTT
T ss_pred CCCCCccCChhHh
Confidence 4567888887774
No 189
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=26.24 E-value=8.4 Score=28.40 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=20.8
Q ss_pred cccccccccccccCCCeeecCCeeeecccHHH
Q 029735 34 ACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQ 65 (189)
Q Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 65 (189)
.=.+|..|+...... |+.+|.+|+.+
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTT
T ss_pred CCEECCcCCCChhhC------CCcCCccccCC
Confidence 456799999887644 88999999854
No 190
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.97 E-value=32 Score=18.98 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.9
Q ss_pred ccccccccccc
Q 029735 36 FRCHHCKGTLK 46 (189)
Q Consensus 36 F~C~~C~~~L~ 46 (189)
+.|..|+..+.
T Consensus 25 lvC~~CG~v~~ 35 (50)
T 1pft_A 25 IVCAKCGYVIE 35 (50)
T ss_dssp EEESSSCCBCC
T ss_pred EECcccCCccc
Confidence 45555555553
No 191
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.96 E-value=47 Score=21.70 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=32.0
Q ss_pred CCCcccCCcccccc-ceEeeC---CccccccccccccccccccCCCee----ecCCeeeecccHHHH
Q 029735 8 TQKCKACEKTVYLV-DQLTAD---NKVYHKACFRCHHCKGTLKLSNYC----SFEGVLYCKPHFDQL 66 (189)
Q Consensus 8 ~~~C~~C~~~I~~~-~~~~~~---~~~~H~~CF~C~~C~~~L~~~~f~----~~~g~~yC~~cy~~~ 66 (189)
.-.|+.|+++..++ +++.-. ..-||..|. .|....+. ..+++++|..|..+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV-------glt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECT-------GMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT-------TCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccC-------CcCHHHHHhhccCCCCCEECccccCcC
Confidence 35699999997443 455554 456787763 23222221 235789999997643
No 192
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=25.94 E-value=27 Score=20.95 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=17.6
Q ss_pred cccccccccccCCCeeecCCee-eecccHHH
Q 029735 36 FRCHHCKGTLKLSNYCSFEGVL-YCKPHFDQ 65 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~ 65 (189)
+.|..|...+.+..+ ..=|.. +|..|..+
T Consensus 25 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 25 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEA 54 (74)
T ss_dssp TBCTTTSSSBCCEEE-ETTCCBCCCHHHHTT
T ss_pred CCCCCCCCCCCCEEE-cCCCChhHHHHhhhc
Confidence 467777766644332 344566 88888754
No 193
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.07 E-value=66 Score=20.43 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCcccCCccccccceEee--CCccccccccccccccccccCCCeeecCCeeeecccH
Q 029735 8 TQKCKACEKTVYLVDQLTA--DNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHF 63 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (189)
...|..|++. ++.|.- =.+.||..|+. -+|. ....|..+|..|.
T Consensus 25 ~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~-----PpL~----~~P~g~W~C~~C~ 70 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQCEFCFHLDCHL-----PALQ----DVPGEEWSCSLCH 70 (88)
T ss_dssp SSCCSSSCSS---SCCEECTTSSCEECTTSSS-----TTCC----CCCSSSCCCCSCC
T ss_pred CCcCcCcCCC---CCEEECCCCCCceecccCC-----CCCC----CCcCCCcCCcccc
Confidence 4579999863 454433 33568887742 1232 2346788999986
No 194
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.98 E-value=21 Score=19.48 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.4
Q ss_pred CCcccCCccccccc
Q 029735 9 QKCKACEKTVYLVD 22 (189)
Q Consensus 9 ~~C~~C~~~I~~~~ 22 (189)
..|..|++||.-..
T Consensus 18 RvC~~CgkPi~lsA 31 (44)
T 2lo3_A 18 RVCEKCGKPLALTA 31 (44)
T ss_dssp EECTTTCCEEETTT
T ss_pred hhhcccCCcchHHH
Confidence 46999999996433
No 195
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.43 E-value=42 Score=20.17 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=10.3
Q ss_pred ccccccccccCCCeeecCCeeeeccc
Q 029735 37 RCHHCKGTLKLSNYCSFEGVLYCKPH 62 (189)
Q Consensus 37 ~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (189)
.|-.|+.+|. |...+|.++|..|
T Consensus 12 ~CP~ck~~L~---~~~~~g~LvC~~c 34 (67)
T 2jny_A 12 ACPKDKGPLR---YLESEQLLVNERL 34 (67)
T ss_dssp BCTTTCCBCE---EETTTTEEEETTT
T ss_pred CCCCCCCcCe---EeCCCCEEEcCCC
Confidence 4444444442 2223455555554
No 196
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.05 E-value=37 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=9.7
Q ss_pred CCCccCCccccc
Q 029735 107 DKCVACKKTVYP 118 (189)
Q Consensus 107 ~~C~~C~~~I~~ 118 (189)
..|+.|..+|..
T Consensus 47 ~~CP~CR~~i~~ 58 (68)
T 2ea5_A 47 QQCPMCRQFVQE 58 (68)
T ss_dssp SSCTTTCCCCCC
T ss_pred CCCCCCCcchhc
Confidence 579999988864
No 197
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.86 E-value=1.1e+02 Score=17.31 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCCccCCcccccCcee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHhhh
Q 029735 107 DKCVACKKTVYPIEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLF 165 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~~~ 165 (189)
..|..|++. ++.| ..-.+.||..|.. .+|.. ...|.-+|..|-.+..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLD-----PPLKT----IPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSS-----SCCSS----CCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCC-----CCcCC----CCCCceEChhccChhh
Confidence 678889874 3333 3445788987753 22322 2346789999976554
No 198
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.83 E-value=36 Score=14.61 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=8.1
Q ss_pred ceeCCCCCcCCC
Q 029735 134 FRCTHGGCVISP 145 (189)
Q Consensus 134 f~C~~C~~~l~~ 145 (189)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 567778776654
No 199
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=22.64 E-value=38 Score=20.07 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=7.2
Q ss_pred CCCcccCCccc
Q 029735 8 TQKCKACEKTV 18 (189)
Q Consensus 8 ~~~C~~C~~~I 18 (189)
...|+.|...+
T Consensus 12 ~~~C~IC~~~~ 22 (79)
T 2egp_A 12 EVTCPICLELL 22 (79)
T ss_dssp CCEETTTTEEC
T ss_pred CCCCcCCCccc
Confidence 34677777665
No 200
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.44 E-value=45 Score=20.07 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=4.7
Q ss_pred CCeeeeccc
Q 029735 54 EGVLYCKPH 62 (189)
Q Consensus 54 ~g~~yC~~c 62 (189)
++.++|..|
T Consensus 24 ~~~LiC~~c 32 (68)
T 2hf1_A 24 KDELICKGD 32 (68)
T ss_dssp TTEEEETTT
T ss_pred CCEEEcCCC
Confidence 455555554
No 201
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.21 E-value=54 Score=25.44 Aligned_cols=34 Identities=3% Similarity=0.020 Sum_probs=24.7
Q ss_pred ccccccccccccCCCeeecCCeeeecccHHHHhh
Q 029735 35 CFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFK 68 (189)
Q Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 68 (189)
=|+|..|...+....-...=|..||+.|..+.+.
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence 3889999988854322235688999999977653
No 202
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.98 E-value=45 Score=20.20 Aligned_cols=9 Identities=22% Similarity=0.833 Sum_probs=4.2
Q ss_pred CcccCCccc
Q 029735 10 KCKACEKTV 18 (189)
Q Consensus 10 ~C~~C~~~I 18 (189)
.|+.|+.++
T Consensus 10 ~CP~ck~~L 18 (70)
T 2js4_A 10 VCPVCKGRL 18 (70)
T ss_dssp BCTTTCCBE
T ss_pred ECCCCCCcC
Confidence 344454443
No 203
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.79 E-value=48 Score=19.96 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.3
Q ss_pred CcccCCccc
Q 029735 10 KCKACEKTV 18 (189)
Q Consensus 10 ~C~~C~~~I 18 (189)
.|+.|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 455555443
No 204
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.72 E-value=28 Score=15.24 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.2
Q ss_pred cccccccccccC
Q 029735 36 FRCHHCKGTLKL 47 (189)
Q Consensus 36 F~C~~C~~~L~~ 47 (189)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 567788777643
No 205
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=21.66 E-value=72 Score=18.00 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=15.6
Q ss_pred eeCCCCCcCCCC-CeeecCCccccHhHHHh
Q 029735 135 RCTHGGCVISPS-NYVAHEHRLYCRHHHNQ 163 (189)
Q Consensus 135 ~C~~C~~~l~~~-~~~~~dg~~yC~~c~~~ 163 (189)
+|+.|+++-..- ....-.|...|..|-..
T Consensus 13 ~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 13 YCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred EecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 567777655432 22223456678777543
No 206
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=21.64 E-value=51 Score=19.41 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=15.9
Q ss_pred cccccccccccCCCeee-c--CCeeeec-ccH
Q 029735 36 FRCHHCKGTLKLSNYCS-F--EGVLYCK-PHF 63 (189)
Q Consensus 36 F~C~~C~~~L~~~~f~~-~--~g~~yC~-~cy 63 (189)
..|+.|+++|..+.+.. + .-++||. .|.
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHHH
Confidence 46777888886554322 2 4466763 443
No 207
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.61 E-value=14 Score=21.03 Aligned_cols=34 Identities=24% Similarity=0.636 Sum_probs=18.9
Q ss_pred CCcccCCccccccceEeeCCccccc--ccccccccccccc
Q 029735 9 QKCKACEKTVYLVDQLTADNKVYHK--ACFRCHHCKGTLK 46 (189)
Q Consensus 9 ~~C~~C~~~I~~~~~~~~~~~~~H~--~CF~C~~C~~~L~ 46 (189)
-.|..|++.......+. ..|. .=|+|..|++.+.
T Consensus 15 ~~C~~C~k~F~~~~~l~----~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhH----hhcCCCCCEECCCCCCccc
Confidence 35778877664322221 2232 3477888877664
No 208
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.46 E-value=49 Score=21.97 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCcccCCccc-ccc---ceEeeCCccc--c-ccccccccccccccCC
Q 029735 8 TQKCKACEKTV-YLV---DQLTADNKVY--H-KACFRCHHCKGTLKLS 48 (189)
Q Consensus 8 ~~~C~~C~~~I-~~~---~~~~~~~~~~--H-~~CF~C~~C~~~L~~~ 48 (189)
+.+|+.|++.. ..+ ..+...|..+ . .....|..|+..+-+.
T Consensus 2 ~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred CcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 45799998752 111 2356677654 3 2689999999987554
No 209
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=21.31 E-value=20 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=0.0
Q ss_pred CCCcccCCccccccc
Q 029735 8 TQKCKACEKTVYLVD 22 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~ 22 (189)
-..|.+|++.|.-++
T Consensus 143 Ra~Ck~C~~kI~Kge 157 (223)
T 4av1_A 143 RSTCKGCMEKIEKGQ 157 (223)
T ss_dssp ---------------
T ss_pred CccccccCCccCCCC
Confidence 467999999996554
No 210
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.20 E-value=74 Score=22.74 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=27.4
Q ss_pred CCCcccCCccccccceEee--CCccccccccccccccccccCCCeeecCCeeeecccHH
Q 029735 8 TQKCKACEKTVYLVDQLTA--DNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFD 64 (189)
Q Consensus 8 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (189)
...|..|+.. ++.|.- -.+.||..|.. -+|. ....|..+|..|..
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~-----p~l~----~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHV-----PTLT----NFPSGEWICTFCRD 50 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSS-----SCCS----SCCSSCCCCTTTSC
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccC-----CCCC----CCCCCCEECccccC
Confidence 4568899853 555433 34678887732 1222 23467899999864
No 211
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=20.97 E-value=35 Score=19.08 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=7.1
Q ss_pred CCcccCCcccc
Q 029735 9 QKCKACEKTVY 19 (189)
Q Consensus 9 ~~C~~C~~~I~ 19 (189)
..|..|++.|.
T Consensus 15 t~C~~C~k~i~ 25 (49)
T 1kbe_A 15 QVCNVCQKSMI 25 (49)
T ss_dssp CCCSSSCCSSC
T ss_pred cCccccCceeE
Confidence 55777766663
No 212
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=20.95 E-value=73 Score=19.19 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=15.7
Q ss_pred eeCCCCCcCCCC-CeeecCCccccHhHHHh
Q 029735 135 RCTHGGCVISPS-NYVAHEHRLYCRHHHNQ 163 (189)
Q Consensus 135 ~C~~C~~~l~~~-~~~~~dg~~yC~~c~~~ 163 (189)
+|+.|+++-..- ....-.|...|..|-..
T Consensus 20 ~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 20 YCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred EecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 466777655432 22223456678777543
No 213
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=20.89 E-value=36 Score=22.02 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=9.5
Q ss_pred CCCcccCCccccc
Q 029735 8 TQKCKACEKTVYL 20 (189)
Q Consensus 8 ~~~C~~C~~~I~~ 20 (189)
...|+.|...+..
T Consensus 25 ~~~C~ICl~~~~~ 37 (114)
T 1v87_A 25 EEDCIICMEKLAV 37 (114)
T ss_dssp SCEETTTTEETTS
T ss_pred CCcCccCChhhcC
Confidence 3579999888743
No 214
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.84 E-value=81 Score=18.17 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCccCCcccccCcee--eccCccccccCceeCCCCCcCCCCCeeecCCccccHhHHHh
Q 029735 107 DKCVACKKTVYPIEKV--AVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQ 163 (189)
Q Consensus 107 ~~C~~C~~~I~~~~~v--~~~g~~~H~~Cf~C~~C~~~l~~~~~~~~dg~~yC~~c~~~ 163 (189)
..|..|++. ++.| ..-.+.||..|.. .+|.. ..+|.-+|..|..+
T Consensus 10 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-----ppl~~----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDG---GELLCCDTCPSSYHIHCLN-----PPLPE----IPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCC---SSCBCCSSSCCCBCSSSSS-----SCCSS----CCSSCCCCTTTTTT
T ss_pred CcCCCCCCC---CCEEEcCCCCHHHcccccC-----CCcCc----CCCCccCChhhcCc
Confidence 578888863 3333 2345678887752 12321 23467788888544
No 215
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.61 E-value=63 Score=19.33 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=12.6
Q ss_pred cccCCccccccceEeeC--Ccccccccc
Q 029735 11 CKACEKTVYLVDQLTAD--NKVYHKACF 36 (189)
Q Consensus 11 C~~C~~~I~~~~~~~~~--~~~~H~~CF 36 (189)
|..|++.-..++.|.-. ++.||..|+
T Consensus 21 C~~C~~~~~~~~ll~CD~C~~~yH~~Cl 48 (70)
T 3asl_A 21 CHLCGGRQDPDKQLMCDECDMAFHIYCL 48 (70)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEEGGGS
T ss_pred CcCCCCcCCCCCEEEcCCCCCceecccC
Confidence 45556543333444322 255776664
No 216
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.21 E-value=28 Score=21.08 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=6.0
Q ss_pred eeee-cccHHHHhh
Q 029735 56 VLYC-KPHFDQLFK 68 (189)
Q Consensus 56 ~~yC-~~cy~~~~~ 68 (189)
++|| +.|-..-++
T Consensus 28 rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 28 RPFCSKRCQLIDLG 41 (68)
T ss_dssp CSSSSHHHHHHHHS
T ss_pred CcccCHHHHhhhHH
Confidence 4555 355444433
No 217
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.20 E-value=42 Score=14.61 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=8.1
Q ss_pred ceeCCCCCcCCC
Q 029735 134 FRCTHGGCVISP 145 (189)
Q Consensus 134 f~C~~C~~~l~~ 145 (189)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 567777776654
No 218
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.09 E-value=39 Score=14.95 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=8.5
Q ss_pred cccccccccccC
Q 029735 36 FRCHHCKGTLKL 47 (189)
Q Consensus 36 F~C~~C~~~L~~ 47 (189)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 577888777654
Done!