Query 029736
Match_columns 189
No_of_seqs 207 out of 1950
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.6E-24 1.9E-28 144.9 11.4 81 7-88 18-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 6.3E-23 2.1E-27 137.6 9.0 84 8-91 1-85 (91)
3 3s8s_A Histone-lysine N-methyl 99.9 2.4E-22 8.2E-27 139.4 12.1 83 7-90 5-87 (110)
4 1whw_A Hypothetical protein ri 99.9 3E-21 1E-25 130.9 13.3 85 6-91 6-90 (99)
5 2dgo_A Cytotoxic granule-assoc 99.9 4.9E-21 1.7E-25 133.4 14.7 87 5-92 12-98 (115)
6 2lkz_A RNA-binding protein 5; 99.9 2.2E-22 7.5E-27 136.0 7.4 81 8-88 9-94 (95)
7 3md1_A Nuclear and cytoplasmic 99.9 1.9E-21 6.4E-26 127.6 11.6 81 8-89 1-81 (83)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.7E-21 6E-26 128.9 10.8 82 7-89 5-86 (87)
9 2fy1_A RNA-binding motif prote 99.9 4.3E-21 1.5E-25 134.2 13.2 84 6-91 5-88 (116)
10 2x1f_A MRNA 3'-END-processing 99.9 3.1E-21 1.1E-25 130.3 11.9 82 8-90 2-83 (96)
11 2dnz_A Probable RNA-binding pr 99.9 4.1E-21 1.4E-25 129.2 12.2 84 7-91 4-87 (95)
12 2cq0_A Eukaryotic translation 99.9 2.9E-21 9.8E-26 132.0 11.5 86 5-91 12-97 (103)
13 1x5u_A Splicing factor 3B subu 99.9 4.1E-21 1.4E-25 131.6 12.1 87 5-92 12-98 (105)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.1E-21 1E-25 131.6 11.3 86 6-92 10-95 (102)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.3E-26 127.7 10.3 80 7-87 6-85 (85)
16 2e5h_A Zinc finger CCHC-type a 99.9 4.5E-21 1.5E-25 128.8 11.6 82 5-87 13-94 (94)
17 2dgs_A DAZ-associated protein 99.9 6.6E-21 2.3E-25 129.3 12.5 84 6-91 8-91 (99)
18 4f25_A Polyadenylate-binding p 99.9 2.6E-21 9E-26 135.0 10.8 82 6-90 3-84 (115)
19 1x4h_A RNA-binding protein 28; 99.9 7.3E-21 2.5E-25 131.5 12.8 86 5-91 12-103 (111)
20 2cpz_A CUG triplet repeat RNA- 99.9 4.6E-21 1.6E-25 133.6 11.6 84 7-91 24-107 (115)
21 2cqc_A Arginine/serine-rich sp 99.9 4.7E-21 1.6E-25 128.9 11.3 83 5-88 12-94 (95)
22 1x5t_A Splicing factor 3B subu 99.9 4.6E-21 1.6E-25 129.2 10.9 83 8-91 5-88 (96)
23 3p5t_L Cleavage and polyadenyl 99.9 4.7E-22 1.6E-26 132.8 5.9 80 9-89 2-83 (90)
24 2dnm_A SRP46 splicing factor; 99.9 3.5E-21 1.2E-25 131.5 10.1 85 6-91 11-95 (103)
25 2do4_A Squamous cell carcinoma 99.9 9.2E-21 3.2E-25 128.8 12.2 82 7-90 16-97 (100)
26 1x5s_A Cold-inducible RNA-bind 99.9 4E-21 1.4E-25 131.0 10.3 85 6-91 10-94 (102)
27 1u6f_A Tcubp1, RNA-binding pro 99.9 9.7E-21 3.3E-25 136.1 12.8 87 5-92 39-125 (139)
28 2div_A TRNA selenocysteine ass 99.9 4.5E-21 1.5E-25 130.0 10.4 83 6-89 7-94 (99)
29 4f02_A Polyadenylate-binding p 99.9 1.5E-22 5.3E-27 155.5 3.3 142 8-172 15-169 (213)
30 2do0_A HnRNP M, heterogeneous 99.9 2.6E-20 9E-25 129.4 14.2 83 8-92 15-97 (114)
31 3ns6_A Eukaryotic translation 99.8 1.4E-21 4.7E-26 133.2 7.3 81 7-88 5-92 (100)
32 2la6_A RNA-binding protein FUS 99.8 5.5E-21 1.9E-25 129.7 10.1 82 5-87 10-99 (99)
33 2cpf_A RNA binding motif prote 99.8 7.6E-21 2.6E-25 128.7 10.7 83 8-91 5-90 (98)
34 2dgp_A Bruno-like 4, RNA bindi 99.8 6.5E-21 2.2E-25 130.8 10.3 86 6-92 11-99 (106)
35 1oo0_B CG8781-PA, drosophila Y 99.8 7.5E-21 2.6E-25 131.4 10.6 82 8-90 26-107 (110)
36 2cph_A RNA binding motif prote 99.8 1.5E-20 5E-25 129.2 11.9 84 7-91 14-99 (107)
37 1p27_B RNA-binding protein 8A; 99.8 5.8E-21 2E-25 131.0 9.8 81 8-89 23-103 (106)
38 3n9u_C Cleavage and polyadenyl 99.8 9.3E-21 3.2E-25 139.2 11.4 81 7-88 54-136 (156)
39 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.9E-20 1.3E-24 126.3 13.4 84 6-92 13-96 (103)
40 1sjq_A Polypyrimidine tract-bi 99.8 9.6E-21 3.3E-25 129.8 10.3 81 4-91 12-94 (105)
41 2kxn_B Transformer-2 protein h 99.8 5.4E-21 1.9E-25 136.1 9.4 85 5-90 43-127 (129)
42 2jrs_A RNA-binding protein 39; 99.8 8.4E-21 2.9E-25 131.1 10.0 84 5-89 23-106 (108)
43 1wi8_A EIF-4B, eukaryotic tran 99.8 1.8E-20 6E-25 128.3 11.5 82 8-92 15-97 (104)
44 3s7r_A Heterogeneous nuclear r 99.8 1.8E-20 6.3E-25 124.1 11.3 80 5-86 8-87 (87)
45 4a8x_A RNA-binding protein wit 99.8 9.3E-21 3.2E-25 125.5 9.7 82 8-90 4-86 (88)
46 2cpe_A RNA-binding protein EWS 99.8 1.7E-20 5.8E-25 130.2 11.5 85 6-91 13-105 (113)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-20 7.7E-25 127.9 11.9 84 7-92 14-100 (105)
48 2dng_A Eukaryotic translation 99.8 2.1E-20 7.2E-25 127.7 11.7 81 8-91 15-95 (103)
49 2khc_A Testis-specific RNP-typ 99.8 8.1E-21 2.8E-25 132.8 9.7 80 7-87 39-118 (118)
50 2dgx_A KIAA0430 protein; RRM d 99.8 2.8E-20 9.5E-25 125.7 12.1 80 6-89 7-90 (96)
51 3ucg_A Polyadenylate-binding p 99.8 1.8E-20 6.3E-25 124.5 11.0 80 8-89 6-85 (89)
52 1b7f_A Protein (SXL-lethal pro 99.8 2E-21 6.8E-26 142.9 6.9 149 8-174 3-159 (168)
53 2d9p_A Polyadenylate-binding p 99.8 1.6E-20 5.4E-25 128.3 10.8 84 6-92 13-96 (103)
54 2cqd_A RNA-binding region cont 99.8 6.5E-20 2.2E-24 127.9 14.1 82 7-90 16-97 (116)
55 2dhg_A TRNA selenocysteine ass 99.8 2.1E-20 7.2E-25 127.8 10.8 85 5-91 6-92 (104)
56 2rs2_A Musashi-1, RNA-binding 99.8 2.4E-20 8.3E-25 128.9 11.1 84 5-90 22-105 (109)
57 3ulh_A THO complex subunit 4; 99.8 3.4E-20 1.2E-24 127.4 11.4 79 7-87 28-106 (107)
58 1fxl_A Paraneoplastic encephal 99.8 3.3E-21 1.1E-25 141.3 6.5 149 8-174 2-158 (167)
59 2dh8_A DAZ-associated protein 99.8 1.8E-20 6.1E-25 128.4 9.8 84 6-91 14-97 (105)
60 2ywk_A Putative RNA-binding pr 99.8 2.6E-20 8.9E-25 125.3 10.3 80 7-88 15-94 (95)
61 2cq3_A RNA-binding protein 9; 99.8 1.1E-19 3.8E-24 124.0 13.4 84 5-91 12-95 (103)
62 2dis_A Unnamed protein product 99.8 4.6E-20 1.6E-24 127.1 11.6 84 7-91 7-94 (109)
63 2dgv_A HnRNP M, heterogeneous 99.8 4.1E-20 1.4E-24 123.6 10.9 82 7-91 7-88 (92)
64 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.4E-20 2.2E-24 134.4 12.3 84 7-91 38-121 (156)
65 3ex7_B RNA-binding protein 8A; 99.8 2.6E-20 9E-25 131.6 9.7 84 8-92 22-105 (126)
66 1s79_A Lupus LA protein; RRM, 99.8 1.7E-20 5.7E-25 128.6 8.2 78 8-88 11-88 (103)
67 1p1t_A Cleavage stimulation fa 99.8 1.9E-20 6.4E-25 128.0 8.4 83 8-91 8-90 (104)
68 2mss_A Protein (musashi1); RNA 99.8 1.3E-20 4.5E-25 121.3 7.0 75 10-86 1-75 (75)
69 2cqp_A RNA-binding protein 12; 99.8 2.1E-20 7.2E-25 126.5 8.3 80 8-88 15-94 (98)
70 2ek1_A RNA-binding protein 12; 99.8 1.2E-20 4E-25 127.0 7.0 80 8-88 15-94 (95)
71 2kn4_A Immunoglobulin G-bindin 99.8 8.1E-20 2.8E-24 133.9 12.1 83 8-91 70-152 (158)
72 1x4e_A RNA binding motif, sing 99.8 5.2E-21 1.8E-25 126.2 4.9 79 8-87 5-83 (85)
73 1x4a_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 124.6 12.3 81 7-91 21-101 (109)
74 2dgw_A Probable RNA-binding pr 99.8 1.4E-19 4.8E-24 120.8 11.6 81 5-89 7-87 (91)
75 2m2b_A RNA-binding protein 10; 99.8 2.3E-20 8E-25 133.0 8.2 83 8-91 23-110 (131)
76 2jwn_A Embryonic polyadenylate 99.8 9.6E-20 3.3E-24 128.4 11.2 81 8-90 36-116 (124)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1E-19 3.5E-24 130.6 11.5 80 6-86 61-140 (140)
78 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-20 6.6E-25 127.4 7.2 80 7-89 18-98 (100)
79 2cqg_A TDP-43, TAR DNA-binding 99.8 2.7E-19 9.2E-24 122.1 12.8 82 7-91 14-95 (103)
80 1x4b_A Heterogeneous nuclear r 99.8 8.9E-20 3E-24 127.2 10.6 82 8-91 27-108 (116)
81 2jvr_A Nucleolar protein 3; RN 99.8 6.2E-20 2.1E-24 127.3 9.6 82 3-89 23-105 (111)
82 2cq4_A RNA binding motif prote 99.8 4.8E-20 1.6E-24 128.2 9.1 80 8-89 25-104 (114)
83 2kt5_A RNA and export factor-b 99.8 1.9E-19 6.4E-24 127.0 12.2 81 7-89 34-114 (124)
84 1l3k_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 142.1 6.2 155 5-172 10-171 (196)
85 2wbr_A GW182, gawky, LD47780P; 99.8 9.7E-20 3.3E-24 120.1 9.7 73 8-87 7-79 (89)
86 3md3_A Nuclear and cytoplasmic 99.8 1.1E-20 3.9E-25 138.3 5.8 148 9-173 1-156 (166)
87 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-20 5.6E-25 121.4 5.8 76 9-86 1-76 (77)
88 2cpi_A CCR4-NOT transcription 99.8 8E-20 2.7E-24 126.6 9.7 82 8-90 15-102 (111)
89 2hvz_A Splicing factor, argini 99.8 1.5E-19 5.3E-24 122.9 10.7 77 9-91 1-77 (101)
90 2lea_A Serine/arginine-rich sp 99.8 3.3E-20 1.1E-24 133.1 7.4 83 8-91 47-129 (135)
91 2ki2_A SS-DNA binding protein 99.8 8.6E-21 3E-25 126.4 4.1 79 9-89 2-80 (90)
92 1x4d_A Matrin 3; structural ge 99.8 8.8E-20 3E-24 124.6 9.1 77 8-90 15-93 (102)
93 3r27_A HnRNP L, heterogeneous 99.8 2.4E-19 8.1E-24 121.7 11.0 76 8-89 21-97 (100)
94 2cpy_A RNA-binding protein 12; 99.8 6.9E-20 2.4E-24 127.6 8.4 83 5-90 12-95 (114)
95 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-19 5.5E-24 126.5 10.2 78 8-91 31-109 (119)
96 1x4c_A Splicing factor, argini 99.8 7.4E-19 2.5E-23 121.1 13.4 78 7-92 14-96 (108)
97 2err_A Ataxin-2-binding protei 99.8 1.5E-19 5.1E-24 124.9 9.8 82 5-89 26-107 (109)
98 1wg5_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 123.4 10.0 81 6-89 13-94 (104)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.8E-19 6.3E-24 133.2 10.6 83 8-91 72-154 (165)
100 2fc9_A NCL protein; structure 99.8 4.5E-19 1.5E-23 120.6 11.7 81 6-91 13-93 (101)
101 2nlw_A Eukaryotic translation 99.8 1.8E-19 6E-24 123.7 9.7 79 8-89 15-100 (105)
102 3tyt_A Heterogeneous nuclear r 99.8 5.4E-20 1.8E-24 140.8 7.8 162 8-176 4-195 (205)
103 1x5o_A RNA binding motif, sing 99.8 2.6E-19 8.8E-24 124.4 10.6 81 7-89 24-112 (114)
104 2hgl_A HNRPF protein, heteroge 99.8 8.4E-20 2.9E-24 131.1 8.2 81 5-88 41-124 (136)
105 3q2s_C Cleavage and polyadenyl 99.8 8.5E-20 2.9E-24 141.9 8.8 81 7-88 67-149 (229)
106 2cq1_A PTB-like protein L; RRM 99.8 4.7E-19 1.6E-23 120.9 11.4 77 8-91 15-93 (101)
107 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-19 4.2E-24 124.0 8.4 82 5-90 12-93 (102)
108 2db1_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 126.9 8.6 80 6-88 15-97 (118)
109 2krb_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 120.1 6.3 73 8-83 1-80 (81)
110 2dnq_A RNA-binding protein 4B; 99.8 6E-19 2.1E-23 117.5 11.2 78 5-91 5-82 (90)
111 2a3j_A U1 small nuclear ribonu 99.8 3.5E-19 1.2E-23 126.4 10.3 78 8-89 29-110 (127)
112 1nu4_A U1A RNA binding domain; 99.8 2.1E-19 7.1E-24 121.2 8.3 79 8-90 8-90 (97)
113 1wex_A Hypothetical protein (r 99.8 7E-19 2.4E-23 120.7 10.9 78 8-91 15-93 (104)
114 3pgw_A U1-A; protein-RNA compl 99.8 3.3E-19 1.1E-23 141.9 10.7 81 6-90 7-91 (282)
115 1why_A Hypothetical protein ri 99.8 7.6E-19 2.6E-23 118.6 10.9 77 7-90 16-94 (97)
116 1fj7_A Nucleolin RBD1, protein 99.8 2.3E-20 7.9E-25 127.0 3.4 82 7-91 16-97 (101)
117 1iqt_A AUF1, heterogeneous nuc 99.8 7E-20 2.4E-24 117.8 5.3 75 10-86 1-75 (75)
118 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.8E-23 120.3 11.6 78 7-91 24-101 (109)
119 2fc8_A NCL protein; structure 99.8 7.4E-19 2.5E-23 119.6 10.4 82 6-91 13-94 (102)
120 2lmi_A GRSF-1, G-rich sequence 99.8 9.8E-20 3.3E-24 125.4 5.8 82 4-88 7-91 (107)
121 2dgu_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 116.5 13.3 77 8-93 11-87 (103)
122 2la4_A Nuclear and cytoplasmic 99.8 3.9E-19 1.3E-23 120.9 8.3 77 5-88 24-100 (101)
123 2dnn_A RNA-binding protein 12; 99.8 8.3E-19 2.8E-23 121.3 9.8 77 8-88 16-92 (109)
124 2dgt_A RNA-binding protein 30; 99.8 3.7E-18 1.3E-22 114.1 12.5 77 6-91 8-84 (92)
125 3lqv_A PRE-mRNA branch site pr 99.8 1.4E-18 4.8E-23 120.8 10.7 79 7-89 7-85 (115)
126 2jvo_A Nucleolar protein 3; nu 99.8 1.2E-18 4.1E-23 120.2 10.2 77 6-91 29-105 (108)
127 2xnq_A Nuclear polyadenylated 99.8 2.4E-18 8.3E-23 116.4 11.3 74 7-89 21-95 (97)
128 2cpx_A Hypothetical protein FL 99.8 1.5E-19 5.1E-24 125.7 5.4 84 8-92 25-108 (115)
129 2dnp_A RNA-binding protein 14; 99.8 2.8E-18 9.5E-23 114.3 11.4 77 5-90 6-82 (90)
130 1wel_A RNA-binding protein 12; 99.8 9.4E-20 3.2E-24 128.6 4.3 81 7-89 24-104 (124)
131 3nmr_A Cugbp ELAV-like family 99.8 5.4E-20 1.8E-24 135.9 3.1 149 7-173 2-163 (175)
132 2e5j_A Methenyltetrahydrofolat 99.8 8.6E-19 2.9E-23 118.4 8.7 78 7-90 18-95 (97)
133 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.4E-23 113.7 10.2 75 6-87 10-85 (85)
134 2cpj_A Non-POU domain-containi 99.8 1.8E-18 6.1E-23 117.2 9.9 78 6-90 13-90 (99)
135 2xs2_A Deleted in azoospermia- 99.8 2.9E-19 9.9E-24 121.7 6.0 78 8-89 9-86 (102)
136 2j8a_A Histone-lysine N-methyl 99.8 7.7E-19 2.6E-23 123.3 8.2 80 9-89 3-96 (136)
137 2cqh_A IGF-II mRNA-binding pro 99.8 1.4E-18 4.6E-23 116.4 9.0 78 6-91 6-85 (93)
138 1x4f_A Matrin 3; structural ge 99.8 6.1E-19 2.1E-23 122.3 7.2 78 8-91 25-104 (112)
139 2lcw_A RNA-binding protein FUS 99.6 2.5E-20 8.6E-25 130.0 0.0 85 7-92 6-98 (116)
140 2adc_A Polypyrimidine tract-bi 99.8 4.8E-19 1.7E-23 137.3 7.2 153 7-172 33-215 (229)
141 1qm9_A Polypyrimidine tract-bi 99.8 4.6E-19 1.6E-23 134.0 6.7 156 8-172 3-184 (198)
142 2e5g_A U6 snRNA-specific termi 99.8 5.4E-18 1.8E-22 113.8 11.1 77 6-89 6-82 (94)
143 2f3j_A RNA and export factor b 99.8 1.7E-18 5.8E-23 129.6 9.4 80 8-89 88-167 (177)
144 2cq2_A Hypothetical protein LO 99.8 3.4E-18 1.2E-22 118.7 10.2 77 8-91 25-108 (114)
145 1fjc_A Nucleolin RBD2, protein 99.8 1E-18 3.5E-23 117.6 7.3 77 8-90 16-92 (96)
146 2hgm_A HNRPF protein, heteroge 99.8 9.1E-19 3.1E-23 124.0 7.4 80 5-88 39-120 (126)
147 2hgn_A Heterogeneous nuclear r 99.8 2.8E-19 9.5E-24 128.8 4.8 80 6-89 44-123 (139)
148 3md3_A Nuclear and cytoplasmic 99.8 6.6E-18 2.3E-22 123.5 12.0 80 7-87 86-165 (166)
149 2cpd_A Apobec-1 stimulating pr 99.8 1.2E-17 4.2E-22 113.1 12.2 75 8-91 15-91 (99)
150 2i2y_A Fusion protein consists 99.8 2.8E-18 9.6E-23 124.8 9.6 77 7-89 72-148 (150)
151 3smz_A Protein raver-1, ribonu 99.8 1.8E-18 6.2E-23 137.7 8.9 151 8-173 95-253 (284)
152 2dha_A FLJ20171 protein; RRM d 99.8 1.2E-18 4E-23 123.0 6.7 79 7-88 22-104 (123)
153 1wf1_A RNA-binding protein RAL 99.8 4.8E-18 1.6E-22 117.3 9.6 74 8-90 27-101 (110)
154 1fje_B Nucleolin RBD12, protei 99.8 5.9E-20 2E-24 136.2 -0.2 150 4-173 9-163 (175)
155 3pgw_S U1-70K; protein-RNA com 99.8 6.2E-18 2.1E-22 142.7 12.1 81 8-89 102-182 (437)
156 3egn_A RNA-binding protein 40; 99.8 6.3E-19 2.2E-23 127.3 5.2 83 8-91 45-132 (143)
157 2kvi_A Nuclear polyadenylated 99.8 2.3E-18 7.9E-23 116.1 7.5 76 7-91 9-85 (96)
158 1x5p_A Negative elongation fac 99.7 2.5E-17 8.6E-22 111.2 12.3 77 5-90 12-88 (97)
159 2g4b_A Splicing factor U2AF 65 99.7 8.6E-18 2.9E-22 123.9 10.8 80 7-87 93-172 (172)
160 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 121.9 12.3 77 8-89 46-124 (164)
161 1wg1_A KIAA1579 protein, homol 99.7 7.7E-18 2.6E-22 111.7 9.5 75 7-89 4-78 (88)
162 1whx_A Hypothetical protein ri 99.7 7.2E-18 2.5E-22 116.8 9.5 75 8-89 10-84 (111)
163 2e44_A Insulin-like growth fac 99.7 5E-18 1.7E-22 114.2 8.5 77 8-89 15-92 (96)
164 2qfj_A FBP-interacting repress 99.7 1.1E-17 3.7E-22 127.7 11.4 81 8-89 125-205 (216)
165 2yh0_A Splicing factor U2AF 65 99.7 1.4E-17 4.6E-22 125.5 11.4 84 6-90 112-195 (198)
166 2dnl_A Cytoplasmic polyadenyla 99.7 8.8E-18 3E-22 116.8 9.4 78 6-87 6-86 (114)
167 3beg_B Splicing factor, argini 99.7 9.2E-18 3.1E-22 117.0 8.6 75 7-89 15-94 (115)
168 3zzy_A Polypyrimidine tract-bi 99.7 2.8E-17 9.4E-22 116.6 10.8 77 8-90 28-107 (130)
169 2cjk_A Nuclear polyadenylated 99.7 7.8E-18 2.7E-22 123.5 8.1 80 8-89 87-166 (167)
170 3d2w_A TAR DNA-binding protein 99.7 3.2E-17 1.1E-21 109.2 10.1 75 7-90 10-85 (89)
171 1l3k_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 123.2 11.1 83 8-92 104-186 (196)
172 4f02_A Polyadenylate-binding p 99.7 2.6E-17 9E-22 126.2 10.5 79 8-89 103-181 (213)
173 2qfj_A FBP-interacting repress 99.7 2.4E-17 8.1E-22 125.8 10.1 159 8-173 28-194 (216)
174 2diu_A KIAA0430 protein; struc 99.7 2.7E-17 9.1E-22 109.5 8.7 76 5-91 6-86 (96)
175 2hzc_A Splicing factor U2AF 65 99.7 3.5E-17 1.2E-21 108.0 8.9 71 7-85 5-86 (87)
176 2yh0_A Splicing factor U2AF 65 99.7 1.3E-17 4.5E-22 125.6 7.3 157 8-173 4-183 (198)
177 1b7f_A Protein (SXL-lethal pro 99.7 6.1E-17 2.1E-21 118.7 10.3 79 7-86 88-168 (168)
178 2g4b_A Splicing factor U2AF 65 99.7 7.6E-18 2.6E-22 124.2 5.4 141 8-173 4-163 (172)
179 2e5i_A Heterogeneous nuclear r 99.7 1.6E-16 5.3E-21 112.1 11.9 75 9-90 26-103 (124)
180 1wf0_A TDP-43, TAR DNA-binding 99.7 3.4E-17 1.2E-21 108.5 7.7 76 8-91 5-80 (88)
181 2pe8_A Splicing factor 45; RRM 99.7 1.6E-16 5.3E-21 109.1 10.8 80 8-88 8-93 (105)
182 2cjk_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 119.2 8.7 147 8-173 3-155 (167)
183 1fxl_A Paraneoplastic encephal 99.7 1E-16 3.5E-21 117.2 10.2 78 8-86 88-167 (167)
184 2bz2_A Negative elongation fac 99.7 9.3E-17 3.2E-21 112.9 9.0 76 6-90 37-112 (121)
185 2ghp_A U4/U6 snRNA-associated 99.7 1.7E-17 5.9E-22 132.5 5.8 155 7-173 116-280 (292)
186 3nmr_A Cugbp ELAV-like family 99.7 1.4E-16 4.7E-21 117.5 9.7 79 7-87 94-175 (175)
187 2voo_A Lupus LA protein; RNA-b 99.7 2E-16 6.7E-21 119.9 10.6 79 8-89 109-187 (193)
188 1fje_B Nucleolin RBD12, protei 99.7 3.8E-16 1.3E-20 115.5 9.4 76 8-89 99-174 (175)
189 2ghp_A U4/U6 snRNA-associated 99.7 5.3E-16 1.8E-20 123.9 10.6 81 7-89 209-291 (292)
190 3u1l_A PRE-mRNA-splicing facto 99.6 3.4E-16 1.2E-20 121.9 8.6 77 7-90 133-230 (240)
191 3smz_A Protein raver-1, ribonu 99.6 1.5E-15 5E-20 120.8 11.1 83 7-91 183-266 (284)
192 3pgw_A U1-A; protein-RNA compl 99.6 2.4E-15 8.2E-20 119.5 11.2 74 8-87 207-281 (282)
193 2dit_A HIV TAT specific factor 99.6 8E-15 2.7E-19 101.5 12.0 81 4-89 11-102 (112)
194 3v4m_A Splicing factor U2AF 65 99.6 4.2E-15 1.4E-19 101.9 9.8 80 8-88 5-96 (105)
195 3tyt_A Heterogeneous nuclear r 99.6 2E-15 6.7E-20 115.4 8.0 75 8-85 123-203 (205)
196 1jmt_A Splicing factor U2AF 35 99.6 9.8E-16 3.4E-20 104.9 5.5 72 13-86 20-103 (104)
197 3sde_A Paraspeckle component 1 99.6 7.8E-15 2.7E-19 115.7 9.7 131 7-168 21-159 (261)
198 2adc_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 112.8 10.2 75 8-88 151-227 (229)
199 1qm9_A Polypyrimidine tract-bi 99.6 5.7E-15 1.9E-19 111.4 8.2 75 8-88 120-196 (198)
200 3sde_A Paraspeckle component 1 99.6 1E-14 3.5E-19 115.0 9.8 81 8-89 96-179 (261)
201 3ue2_A Poly(U)-binding-splicin 99.6 1.8E-14 6.1E-19 100.7 8.9 80 8-88 20-108 (118)
202 3tht_A Alkylated DNA repair pr 99.5 4.9E-14 1.7E-18 115.1 10.1 73 8-87 18-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.4E-13 8.4E-18 92.2 9.1 75 8-90 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.4 1.2E-12 4E-17 90.9 7.3 76 8-88 7-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 5E-11 1.7E-15 78.5 9.1 72 8-89 7-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 4.2E-11 1.4E-15 83.5 8.7 74 8-87 18-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.1 3.2E-10 1.1E-14 87.0 8.5 68 20-88 141-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 3.3E-10 1.1E-14 74.9 6.7 70 8-87 15-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.7 2.2E-07 7.7E-12 62.8 9.2 73 7-86 20-97 (117)
210 2i2y_A Fusion protein consists 98.1 9.8E-08 3.4E-12 68.6 -3.0 123 46-173 9-137 (150)
211 2kn4_A Immunoglobulin G-bindin 97.9 5.8E-07 2E-11 65.0 -1.7 130 37-173 2-139 (158)
212 1wey_A Calcipressin 1; structu 97.9 0.00014 4.9E-09 48.7 9.1 74 8-88 5-83 (104)
213 2dhx_A Poly (ADP-ribose) polym 97.8 0.00057 1.9E-08 45.6 11.7 70 7-86 7-81 (104)
214 1uw4_A UPF3X; nonsense mediate 97.7 0.00046 1.6E-08 45.3 9.7 79 9-87 2-86 (91)
215 1whv_A Poly(A)-specific ribonu 97.7 0.0001 3.4E-09 48.7 6.4 54 8-70 16-69 (100)
216 3ctr_A Poly(A)-specific ribonu 97.4 0.00016 5.4E-09 48.0 4.4 54 9-71 7-60 (101)
217 1wwh_A Nucleoporin 35, nucleop 97.1 0.0033 1.1E-07 43.1 8.2 71 7-86 23-94 (119)
218 2l08_A Regulator of nonsense t 97.0 0.0033 1.1E-07 41.6 7.2 80 8-87 9-94 (97)
219 3pq1_A Poly(A) RNA polymerase; 96.2 0.003 1E-07 53.3 3.3 56 8-69 53-108 (464)
220 3p3d_A Nucleoporin 53; structu 95.6 0.034 1.2E-06 38.6 6.3 77 8-87 7-97 (132)
221 3pgw_S U1-70K; protein-RNA com 94.9 3.8E-05 1.3E-09 64.6 -12.8 24 149-172 146-170 (437)
222 3d45_A Poly(A)-specific ribonu 92.7 0.29 9.8E-06 41.8 7.1 56 8-72 440-495 (507)
223 2lea_A Serine/arginine-rich sp 92.1 0.014 4.9E-07 40.6 -1.5 104 51-173 5-116 (135)
224 1rk8_A CG8781-PA, CG8781-PA pr 87.0 0.012 4.1E-07 42.4 -5.4 116 55-172 11-140 (165)
225 2g0c_A ATP-dependent RNA helic 74.9 10 0.00034 22.9 5.8 68 10-87 2-75 (76)
226 2diu_A KIAA0430 protein; struc 56.2 2.6 9E-05 27.5 0.2 25 148-172 47-72 (96)
227 4e8u_A Putative uncharacterize 32.1 1.2E+02 0.004 21.8 5.7 57 9-68 13-81 (172)
228 3ts2_A Protein LIN-28 homolog 31.4 7.4 0.00025 27.3 -0.7 28 23-58 2-29 (148)
229 3mfb_A Uncharacterized protein 30.2 85 0.0029 22.2 4.7 37 20-56 3-42 (157)
230 4eyt_A Telomerase associated p 27.7 1.2E+02 0.0042 19.3 9.6 56 7-70 11-66 (129)
231 1fme_A FSD-EY peptide; beta-BE 22.7 52 0.0018 15.5 1.6 12 21-32 14-25 (28)
232 3fut_A Dimethyladenosine trans 22.3 83 0.0028 24.0 3.8 31 9-40 111-141 (271)
233 1xn9_A 30S ribosomal protein S 20.4 1.8E+02 0.0062 18.7 6.0 48 18-66 28-80 (101)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=144.95 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
++++|||+|||+++++++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++.|||. .|.|+.|+|+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999998 999999999998
Q ss_pred CC
Q 029736 87 GQ 88 (189)
Q Consensus 87 ~~ 88 (189)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=137.60 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G-~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
+++|||+|||+++++++|+++|++|| .|.+|+|++|+.++++||||||+|.+.++|++|++.+++.+.++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999886544899999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 77544
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=139.39 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+||++.+++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|++|++.|||. .|.|+.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-SVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 3889999999999999999999999999999999999999999999999999999999999999998 999999999998
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3e-21 Score=130.89 Aligned_cols=85 Identities=31% Similarity=0.364 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 34789999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=4.9e-21 Score=133.36 Aligned_cols=87 Identities=23% Similarity=0.391 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.|++. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345789999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 029736 85 LSGQDKNT 92 (189)
Q Consensus 85 ~~~~~~~~ 92 (189)
+++.....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876444
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=136.00 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCC--eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc---eeeCCeEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGR--VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI---VTLYNRTLR 82 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~--i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~---~~~~g~~l~ 82 (189)
=.+|||+|||+.+|+++|+++|++||. +.+|++++|+.++++||||||+|.+.++|++|++.||+. +.|+|++|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 478999999999999999999999995 678999999999999999999999999999999999986 359999999
Q ss_pred EEecCC
Q 029736 83 FALSGQ 88 (189)
Q Consensus 83 v~~~~~ 88 (189)
|++++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=1.9e-21 Score=127.64 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
+.+|||+|||+.+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|||. .++|+.|+|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-eeCCcEEEEEecC
Confidence 368999999999999999999999999999999999899999999999999999999999999998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
+.
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=128.90 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||..+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.||+. .++|+.|+|.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEec
Confidence 3789999999999999999999999999999999999889999999999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 9
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=134.21 Aligned_cols=84 Identities=23% Similarity=0.469 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
+..++|||+|||.++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK-SLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC-BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 348999999999999999999999999999999999997 9999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976543
No 10
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=3.1e-21 Score=130.25 Aligned_cols=82 Identities=27% Similarity=0.470 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.|||. .++|+.|+|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEcC
Confidence 789999999999999999999999999999999999989999999999999999999999999998 9999999999997
Q ss_pred CCC
Q 029736 88 QDK 90 (189)
Q Consensus 88 ~~~ 90 (189)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 753
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=129.21 Aligned_cols=84 Identities=23% Similarity=0.505 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-ELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEEc
Confidence 3799999999999999999999999999999999999989999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77543
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=132.00 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF-GYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 344799999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 029736 85 LSGQDKN 91 (189)
Q Consensus 85 ~~~~~~~ 91 (189)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9977543
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=131.57 Aligned_cols=87 Identities=43% Similarity=0.756 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|++. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI-KLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC-BCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 344799999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 029736 85 LSGQDKNT 92 (189)
Q Consensus 85 ~~~~~~~~ 92 (189)
++......
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99876443
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=131.56 Aligned_cols=86 Identities=37% Similarity=0.571 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 029736 86 SGQDKNT 92 (189)
Q Consensus 86 ~~~~~~~ 92 (189)
++.....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875443
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.4e-21 Score=127.65 Aligned_cols=80 Identities=40% Similarity=0.625 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.||+. .++|+.|+|+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 4899999999999999999999999999999999999889999999999999999999999999998 999999999987
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=128.78 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK-QLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 445789999999999999999999999999999999999989999999999999999999999999998 9999999999
Q ss_pred ecC
Q 029736 85 LSG 87 (189)
Q Consensus 85 ~~~ 87 (189)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-21 Score=129.27 Aligned_cols=84 Identities=18% Similarity=0.420 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++ |++. .|.|+.|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH-DIMGKKVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC-BSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC-EECCeEEEEEE
Confidence 347999999999999999999999999999999999999999999999999999999999999 9998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976543
No 18
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.6e-21 Score=135.02 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+++++++|+++|++||.|.+|+|++++ +.+||||||+|.+.++|++|++.|++. .|+|+.|+|.+
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~-~~~g~~i~V~~ 79 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGR 79 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 346789999999999999999999999999999999985 458999999999999999999999998 99999999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
+....
T Consensus 80 a~~~~ 84 (115)
T 4f25_A 80 FKSRK 84 (115)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.3e-21 Score=131.54 Aligned_cols=86 Identities=27% Similarity=0.392 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcC------CceeeCC
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS------GIVTLYN 78 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~------g~~~~~g 78 (189)
+...++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++|++.|| +. .|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~-~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL-KLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE-ESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc-EEcC
Confidence 3447899999999999999999999999999999999999999999999999999999999999999 87 9999
Q ss_pred eEEEEEecCCCCC
Q 029736 79 RTLRFALSGQDKN 91 (189)
Q Consensus 79 ~~l~v~~~~~~~~ 91 (189)
+.|+|.++.....
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999976543
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=4.6e-21 Score=133.57 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 102 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF-QIGMKRLKVQLK 102 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEEc
Confidence 3689999999999999999999999999999999999889999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 77543
No 21
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=128.86 Aligned_cols=83 Identities=25% Similarity=0.406 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 444789999999999999999999999999999999999989999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 029736 85 LSGQ 88 (189)
Q Consensus 85 ~~~~ 88 (189)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.6e-21 Score=129.22 Aligned_cols=83 Identities=31% Similarity=0.588 Sum_probs=79.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE-EEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~-~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||+.+++++|+++|++||.|..+ +|++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 83 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ-YLCNRPITVSYA 83 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC-EETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEEe
Confidence 8999999999999999999999999999999 99999889999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
.....
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 77543
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=4.7e-22 Score=132.84 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G--~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||. .|+|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-CSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-eeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999998 999999999988
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
.+.
T Consensus 81 ~~~ 83 (90)
T 3p5t_L 81 NKL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=131.55 Aligned_cols=85 Identities=31% Similarity=0.491 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-ELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-CBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 34799999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 976543
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.2e-21 Score=128.77 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 93 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM-TIKENIIKVAIS 93 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEC
Confidence 47899999999999999999999999999999999997 8999999999999999999999999997 999999999999
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
++..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7754
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-21 Score=131.01 Aligned_cols=85 Identities=22% Similarity=0.503 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK-SVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-CTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 34799999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 977544
No 27
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=136.10 Aligned_cols=87 Identities=24% Similarity=0.415 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF-NILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE-ECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 344689999999999999999999999999999999999989999999999999999999999999998 9999999999
Q ss_pred ecCCCCCC
Q 029736 85 LSGQDKNT 92 (189)
Q Consensus 85 ~~~~~~~~ 92 (189)
+++....+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876444
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=130.04 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE-EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE----
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVV-DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT---- 80 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~-~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~---- 80 (189)
...++|||+|||+.+++++|+++|++||.|. .|++++++.+++++|||||+|.+.++|++|++.||+. .+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-PLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS-EESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC-ccCCCCccee
Confidence 3489999999999999999999999999999 9999999999999999999999999999999999998 999999
Q ss_pred EEEEecCCC
Q 029736 81 LRFALSGQD 89 (189)
Q Consensus 81 l~v~~~~~~ 89 (189)
|+|.+++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998765
No 29
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=1.5e-22 Score=155.50 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=111.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+++. .+.|+.|++.++.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-~~~g~~i~~~~~~ 93 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-VIKGKPVRIMWSQ 93 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-hcCCccccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999998 9999999999875
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCC---CCCCC-CCCCCCCCCCCCCCCccc--------cCCCCccccC
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEIS---HHSMR-ISGTRHYSSEEPPPPGVT--------HESNGYETHL 155 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~Gy~~~~ 155 (189)
....... .....+.|.++|.. +++.. +. +.+.+... ...+|||.|.
T Consensus 94 ~~~~~~~--------------~~~~~l~v~nl~~~~t~~~l~~~F~--------~~G~i~~~~i~~d~~~~~g~~fV~f~ 151 (213)
T 4f02_A 94 RDPSLRK--------------SGVGNIFIKNLDKSIDNKALYDTFS--------AFGNILSCKVVCDENGSKGYGFVHFE 151 (213)
T ss_dssp CCTHHHH--------------HCTTEEEEESCCTTCCHHHHHHHHG--------GGSCEEEEEEEEETTEEEEEEEEEES
T ss_pred ccccccc--------------cccccceECCcccccHHHHHHHHHh--------hcCCeEEEEeeccCCCCceEEEEEeC
Confidence 4321110 11146788888871 11110 00 11111100 1237899999
Q ss_pred CCcccccc-ccccCcccC
Q 029736 156 NVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 156 ~~~~~~~a-~~~~g~~~~ 172 (189)
+.++++.| ..|+|..|+
T Consensus 152 ~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 152 TQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp SHHHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHHhCCCEEC
Confidence 99999999 789999988
No 30
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=129.36 Aligned_cols=83 Identities=31% Similarity=0.470 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+++
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 92 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ-LLFDRPMHVKMDE 92 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC-EeCCCEEEEEEcc
Confidence 7899999999999999999999999999999999997 6999999999999999999999999998 9999999999987
Q ss_pred CCCCC
Q 029736 88 QDKNT 92 (189)
Q Consensus 88 ~~~~~ 92 (189)
.....
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 64433
No 31
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1.4e-21 Score=133.21 Aligned_cols=81 Identities=31% Similarity=0.369 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCC------CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC-e
Q 029736 7 SGCNVYIGNLDE------KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN-R 79 (189)
Q Consensus 7 ~~~~l~V~nL~~------~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g-~ 79 (189)
..++|||+|||. ++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|||. .|.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-RLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-BSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-ccCCCe
Confidence 378999999999 9999999999999999999999999999999999999999999999999999998 9999 9
Q ss_pred EEEEEecCC
Q 029736 80 TLRFALSGQ 88 (189)
Q Consensus 80 ~l~v~~~~~ 88 (189)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 32
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=129.71 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~--------~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~ 76 (189)
+...++|||+|||+++++++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++.|||. .+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~-~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-BS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC-Ee
Confidence 344799999999999999999999999999999 999999999999999999999999999999999998 99
Q ss_pred CCeEEEEEecC
Q 029736 77 YNRTLRFALSG 87 (189)
Q Consensus 77 ~g~~l~v~~~~ 87 (189)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-21 Score=128.66 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCC---CCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKE---TDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~---~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
.++|||+|||+.+++++|+++|++||.|..|.++.++. +++++|||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 83 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH-TVDGHKLEVR 83 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC-EETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEE
Confidence 78999999999999999999999999999999998876 6689999999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 029736 85 LSGQDKN 91 (189)
Q Consensus 85 ~~~~~~~ 91 (189)
+++....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9977543
No 34
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=6.5e-21 Score=130.81 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee---CCeEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL---YNRTLR 82 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~---~g~~l~ 82 (189)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.||+. .+ .|+.|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCceEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 76 889999
Q ss_pred EEecCCCCCC
Q 029736 83 FALSGQDKNT 92 (189)
Q Consensus 83 v~~~~~~~~~ 92 (189)
|.++......
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999875443
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=7.5e-21 Score=131.41 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.|||. .|+|+.|+|.++.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDWCF 104 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEEcc
Confidence 578999999999999999999999999999999999999999999999999999999999999998 9999999999987
Q ss_pred CCC
Q 029736 88 QDK 90 (189)
Q Consensus 88 ~~~ 90 (189)
...
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 654
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=129.15 Aligned_cols=84 Identities=18% Similarity=0.406 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecC-CCCCCcceEEEEEeCCHHHHHHHHHHc-CCceeeCCeEEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRD-KETDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~-~~~~~~kg~afV~f~~~~~a~~al~~l-~g~~~~~g~~l~v~ 84 (189)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ +.+++++|||||+|.+.++|++|++.| |+. .|.|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC-BSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC-eECCCEEEEE
Confidence 4789999999999999999999999999999999999 789999999999999999999999999 898 9999999999
Q ss_pred ecCCCCC
Q 029736 85 LSGQDKN 91 (189)
Q Consensus 85 ~~~~~~~ 91 (189)
+++....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987544
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=131.05 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a~ 101 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDWCF 101 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEeec
Confidence 578999999999999999999999999999999999999999999999999999999999999998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 64
No 38
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=139.17 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G--~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
..++|||+|||+++++++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~-~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK-VLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEeEEE
Confidence 368999999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 029736 85 LSGQ 88 (189)
Q Consensus 85 ~~~~ 88 (189)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9864
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.9e-20 Score=126.32 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|++++. .++|||||+|.+.++|++|++.|++. .|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR-KILGKEVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC-CcCCCeEEEEE
Confidence 3479999999999999999999999999999999999853 36899999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 029736 86 SGQDKNT 92 (189)
Q Consensus 86 ~~~~~~~ 92 (189)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875443
No 40
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=129.80 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceeeCCeEE
Q 029736 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG--IVTLYNRTL 81 (189)
Q Consensus 4 ~~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g--~~~~~g~~l 81 (189)
.+...++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++ . .|.|++|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~-~l~Gr~l 84 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTP-VLRGQPI 84 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCc-eECCEEE
Confidence 4555899999999999999999999999999999999875 59999999999999999998864 5 8999999
Q ss_pred EEEecCCCCC
Q 029736 82 RFALSGQDKN 91 (189)
Q Consensus 82 ~v~~~~~~~~ 91 (189)
+|.+++.+..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999876533
No 41
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=5.4e-21 Score=136.14 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~-~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 344789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
++..++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987653
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=131.09 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||..+++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|++.|+|. .|.|+.|+|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF-ELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 344789999999999999999999999999999999999889999999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
+++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98764
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=128.33 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCC-CCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~-~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||+.+++++|+++|++|| |..|.|++++.+ ++++|||||+|.+.++|++|+ .|++. .|.|+.|+|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a 91 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNKRIRVDVA 91 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC-EETTEECEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC-EeCCcEEEEEEc
Confidence 68999999999999999999999999 999999999887 999999999999999999999 89998 999999999999
Q ss_pred CCCCCC
Q 029736 87 GQDKNT 92 (189)
Q Consensus 87 ~~~~~~ 92 (189)
......
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 875443
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.8e-20 Score=124.05 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++ +++. .|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEH-RLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCC-EECCEEEEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999997 5776 8999999998
Q ss_pred ec
Q 029736 85 LS 86 (189)
Q Consensus 85 ~~ 86 (189)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=125.55 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCC-cceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDK-PKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~-~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||. .++|+.|+|+++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-eECCeEEEEEEC
Confidence 68999999999999999999999999999999999877666 8999999999999999999999998 999999999998
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
.+.+
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=130.19 Aligned_cols=85 Identities=32% Similarity=0.441 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE--------EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVV--------DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY 77 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~--------~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~ 77 (189)
...++|||+|||+.+++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++|++.||+. .|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK-DFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-ccC
Confidence 3478999999999999999999999999999 6999999899999999999999999999999999998 999
Q ss_pred CeEEEEEecCCCCC
Q 029736 78 NRTLRFALSGQDKN 91 (189)
Q Consensus 78 g~~l~v~~~~~~~~ 91 (189)
|+.|+|.+++....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999877543
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.2e-20 Score=127.88 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC---eEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN---RTLRF 83 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g---~~l~v 83 (189)
..++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.||+. .+.| +.|+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~V 91 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLVV 91 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEEE
Confidence 37999999999999999999999999999999999997 7999999999999999999999999998 8887 99999
Q ss_pred EecCCCCCC
Q 029736 84 ALSGQDKNT 92 (189)
Q Consensus 84 ~~~~~~~~~ 92 (189)
.++.....+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876443
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.1e-20 Score=127.72 Aligned_cols=81 Identities=28% Similarity=0.473 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++|| |..|.|++++.+++++|||||+|.+.++|++|+ .||+. .|.|+.|+|.++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 91 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA-LLGDRSLRVDIAE 91 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC-EETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC-eECCeEEEEEEec
Confidence 78999999999999999999999997 999999999999999999999999999999999 89998 9999999999997
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=8.1e-21 Score=132.82 Aligned_cols=80 Identities=28% Similarity=0.499 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.||+. .|+|+.|+|+++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~a 117 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF-QVGTKRLKVQLK 117 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC-EETTEECCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEec
Confidence 4689999999999999999999999999999999999989999999999999999999999999998 999999999987
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=125.69 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~----~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
.+.++|||+|||+.+++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||. .|.|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~-~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY-KIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE-EETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC-EECCeEE
Confidence 347899999999999999999 99999999999999998755 899999999999999999999998 9999999
Q ss_pred EEEecCCC
Q 029736 82 RFALSGQD 89 (189)
Q Consensus 82 ~v~~~~~~ 89 (189)
+|+++++.
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99999764
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.8e-20 Score=124.45 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|+ .|++. .+.|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~-~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES-LFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC-EETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC-EECCcEEEEEEcc
Confidence 589999999999999999999999999999999999889999999999999999999999 89998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 52
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=2e-21 Score=142.90 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=112.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|++. .+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-TVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-EeCCcEEEEEecC
Confidence 789999999999999999999999999999999999889999999999999999999999999998 9999999999986
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC---CCC-CCCCCCCCC---CCCCCCccccCCCCccccCCCccc
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH---SMR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNY 160 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~ 160 (189)
+.... .....+.+.++|..-. +.. +.....+.. ......+ .....||+.|.+.+++
T Consensus 82 ~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 82 PGGES----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG-RPRGVAFVRYNKREEA 144 (168)
T ss_dssp CCSST----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC-CEEEEEEEEESSHHHH
T ss_pred CCccc----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC-CcceEEEEEECCHHHH
Confidence 54221 1225678888886111 100 011111000 0000000 0112689999999999
Q ss_pred ccc-ccccCcccCCc
Q 029736 161 DYS-RRVFGATLDSI 174 (189)
Q Consensus 161 ~~a-~~~~g~~~~~~ 174 (189)
..| ..++|..|+..
T Consensus 145 ~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 145 QEAISALNNVIPEGG 159 (168)
T ss_dssp HHHHHHHTTCCCTTC
T ss_pred HHHHHHhcCCEecCC
Confidence 999 78999999753
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=128.29 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ +++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR-IVATKPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 34799999999999999999999999999999999998 8899999999999999999999999998 99999999999
Q ss_pred cCCCCCC
Q 029736 86 SGQDKNT 92 (189)
Q Consensus 86 ~~~~~~~ 92 (189)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9875443
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.5e-20 Score=127.87 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.+++ .|.|+.|+|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~V~~a 93 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKANVNLA 93 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEEEEEc
Confidence 478999999999999999999999999999999999999999999999999999999999999997 599999999999
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
....
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 7643
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=127.80 Aligned_cols=85 Identities=20% Similarity=0.386 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhc-CCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee-eCCeEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQ-AGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT-LYNRTLR 82 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~-~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~-~~g~~l~ 82 (189)
+...++|||+|||+.+++++|+++|++ ||.|..|.|+.++ +++++|||||+|.+.++|++|++.|++. . |+|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeEE
Confidence 344799999999999999999999999 9999999999998 9999999999999999999999999998 8 9999999
Q ss_pred EEecCCCCC
Q 029736 83 FALSGQDKN 91 (189)
Q Consensus 83 v~~~~~~~~ 91 (189)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876543
No 56
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=2.4e-20 Score=128.93 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|++|++.++ . .|+|+.|+|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~-~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C-cCCCEEEEEE
Confidence 3447999999999999999999999999999999999999999999999999999999999999764 5 8999999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
++....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987653
No 57
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=3.4e-20 Score=127.37 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.|++. .|.|+.|+|+++
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 105 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV-PLDGRPMNIQLV 105 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEEe
Confidence 37899999999999999999999999999999999997 9999999999999999999999999998 999999999987
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=3.3e-21 Score=141.34 Aligned_cols=149 Identities=15% Similarity=0.240 Sum_probs=112.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|.++.+++++.+|+++|+|||+|.+.++|++|++.|++. .+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-RLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-ccCCceEEEEecC
Confidence 689999999999999999999999999999999999889999999999999999999999999998 9999999999986
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCC---CC-CCCCCCCCC---CCCCCCccccCCCCccccCCCccc
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHHS---MR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNY 160 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~ 160 (189)
+.... .....+.+.++|..-.. .. +.....+.. ......+ ....+||+.|.+.+++
T Consensus 81 ~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 81 PSSAS----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG-VSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCCGG----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHH
T ss_pred CCccc----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC-CccceEEEEeCCHHHH
Confidence 53211 12256788888862111 00 000000000 0000000 0122689999999999
Q ss_pred ccc-ccccCcccCCc
Q 029736 161 DYS-RRVFGATLDSI 174 (189)
Q Consensus 161 ~~a-~~~~g~~~~~~ 174 (189)
..| ..++|..|.+.
T Consensus 144 ~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGA 158 (167)
T ss_dssp HHHHHHHTTCCCTTC
T ss_pred HHHHHHhcCCccCCC
Confidence 999 78999998753
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=128.44 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. ++. .|.|+.|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~-~~~g~~l~V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH-TLDGRNIDPKP 91 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE-EETTEEEBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC-eECCEEEEEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999998 997 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876543
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=125.25 Aligned_cols=80 Identities=38% Similarity=0.739 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI-RLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC-EETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC-EECCCEEEEEEc
Confidence 378999999999999999999999999999999999974 899999999999999999999999998 999999999987
Q ss_pred CC
Q 029736 87 GQ 88 (189)
Q Consensus 87 ~~ 88 (189)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=124.03 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|++|++.|++. .|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 34479999999999999999999999999999999999853 48999999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 029736 85 LSGQDKN 91 (189)
Q Consensus 85 ~~~~~~~ 91 (189)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9977543
No 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=127.14 Aligned_cols=84 Identities=23% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCC-eEEEEEe-cCCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceeeCCeEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGR-VVDLYIP-RDKETDKPKGFAFVEYESEEIADYAIKLFS--GIVTLYNRTLR 82 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~-i~~~~~~-~~~~~~~~kg~afV~f~~~~~a~~al~~l~--g~~~~~g~~l~ 82 (189)
..++|||+|||+.+++++|+++|++||. |..+.++ .++.+++++|||||+|.+.++|++|++.|+ +. .+.|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~-~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI-QLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS-CBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc-eecCCeEE
Confidence 3789999999999999999999999998 9999998 888889999999999999999999999996 46 89999999
Q ss_pred EEecCCCCC
Q 029736 83 FALSGQDKN 91 (189)
Q Consensus 83 v~~~~~~~~ 91 (189)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987544
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=4.1e-20 Score=123.57 Aligned_cols=82 Identities=24% Similarity=0.465 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..+.++++ +++++|||||+|.+.++|++|++.|++. .+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM-KLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC-CBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 3799999999999999999999999999999999884 7899999999999999999999999998 999999999998
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 77543
No 64
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=6.4e-20 Score=134.38 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=79.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+. .|.|+.|+|.++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT-RLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS-EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEC
Confidence 3789999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 65
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.6e-20 Score=131.64 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=79.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVDWCF 100 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEEec
Confidence 679999999999999999999999999999999999889999999999999999999999999998 9999999999997
Q ss_pred CCCCC
Q 029736 88 QDKNT 92 (189)
Q Consensus 88 ~~~~~ 92 (189)
.....
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 65443
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=128.58 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++ +++. .|+|+.|.|.++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~-~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ-KYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC-CCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC-EECCEEEEEEEch
Confidence 68999999999999999999999999999999999986 9999999999999999999999 8997 9999999999876
Q ss_pred C
Q 029736 88 Q 88 (189)
Q Consensus 88 ~ 88 (189)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=128.00 Aligned_cols=83 Identities=35% Similarity=0.571 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .+.|+.|+|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB-SCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeCC
Confidence 589999999999999999999999999999999999889999999999999999999999999998 9999999999997
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7543
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.3e-20 Score=121.34 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 10 ~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++. .++|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH-EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC-CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC-EECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9998 999999999874
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=126.48 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLVLGS 93 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC-EETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEEcC
Confidence 688999999999999999999999999998888888889999999999999999999999999998 9999999999986
Q ss_pred C
Q 029736 88 Q 88 (189)
Q Consensus 88 ~ 88 (189)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.2e-20 Score=126.97 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEecc
Confidence 689999999999999999999999999999999988889999999999999999999999999998 9999999999875
Q ss_pred C
Q 029736 88 Q 88 (189)
Q Consensus 88 ~ 88 (189)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 71
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=8.1e-20 Score=133.90 Aligned_cols=83 Identities=31% Similarity=0.521 Sum_probs=79.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|++|+.+++++|||||+|.+.++|++|++.|||. .|.|+.|+|.+++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMAR 148 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE-ESSSSEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEECC
Confidence 689999999999999999999999999999999999989999999999999999999999999998 9999999999998
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 149 ~~~~ 152 (158)
T 2kn4_A 149 YGRP 152 (158)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7533
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-21 Score=126.20 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+. .+.|+.|++++++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS-GVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH-TCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC-eEeeEEEeecCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999998 9999998876643
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=124.62 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|++.||+. .|.|+.|+|+++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~a 96 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY-DYDGYRLRVEFP 96 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC-EETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEc
Confidence 4789999999999999999999999999999999654 568999999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 77543
No 74
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=120.81 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++| .|..|+|+++ .+|+++|||||+|.+.++|++|++ ||+. .|+|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~-~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE-YMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE-EETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc-eeCCcEEEEE
Confidence 3447899999999999999999999999 8999999999 789999999999999999999999 9998 9999999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
++...
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98765
No 75
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=133.04 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc---eeeCCeEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVD--LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI---VTLYNRTLR 82 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~--~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~---~~~~g~~l~ 82 (189)
.++|||+|||+++++++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+|++.||+. +.|.|+.|+
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 689999999999999999999999999977 99999999999999999999999 999999999994 379999999
Q ss_pred EEecCCCCC
Q 029736 83 FALSGQDKN 91 (189)
Q Consensus 83 v~~~~~~~~ 91 (189)
|.++++...
T Consensus 102 V~~a~~~~~ 110 (131)
T 2m2b_A 102 VEFAKGSKR 110 (131)
T ss_dssp CEECCCSCC
T ss_pred EEECCCCCC
Confidence 999977533
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=9.6e-20 Score=128.40 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|++|+ .|++. .|+|+.|+|.+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET-VFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC-EETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 479999999999999999999999999999999999889999999999999999999999 79998 9999999999987
Q ss_pred CCC
Q 029736 88 QDK 90 (189)
Q Consensus 88 ~~~ 90 (189)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=130.57 Aligned_cols=80 Identities=40% Similarity=0.632 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||..+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 99999999987
Q ss_pred c
Q 029736 86 S 86 (189)
Q Consensus 86 ~ 86 (189)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 78
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=127.39 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDK-ETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~-~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+++++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|++|+ .|++. .|+|+.|+|.+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~-~~~g~~l~V~~ 94 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNRRIRVDV 94 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC-CBTTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC-EECCeEEEEEe
Confidence 378999999999999999999999999 9999999998 68999999999999999999999 89998 99999999999
Q ss_pred cCCC
Q 029736 86 SGQD 89 (189)
Q Consensus 86 ~~~~ 89 (189)
++..
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 79
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-19 Score=122.10 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++. +. .|+|+.|+|.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~l~v~~a 90 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDGRWCDCKLP 90 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETTEEEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCCeEEEEEec
Confidence 378999999999999999999999999999999999998999999999999999999999993 65 899999999998
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 76533
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.9e-20 Score=127.18 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+. ++. .|+|+.|+|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH-SIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE-EETTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc-EECCEEEEEEECC
Confidence 48999999999999999999999999999999999999999999999999999999999997 887 9999999999987
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6543
No 81
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=6.2e-20 Score=127.31 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 3 GNSNSGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 3 ~~~~~~~~l~V~nL~~~~~e~~L~~~F~~~G-~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
..|+..++|||+|||+++++++|+++|++|| .|..+.+..+ +++|||||+|.+.++|++|++.|||. .|.|+.|
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~-~l~Gr~i 97 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNI-EFRGSVI 97 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTE-EETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCC-EECCeEE
Confidence 3455678999999999999999999999999 8999988643 47899999999999999999999998 9999999
Q ss_pred EEEecCCC
Q 029736 82 RFALSGQD 89 (189)
Q Consensus 82 ~v~~~~~~ 89 (189)
+|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998653
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-20 Score=128.17 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+ .||+. .|.|+.|+|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ-RLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE-EETTEEEEEEEHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC-EeCCeEEEEEecC
Confidence 479999999999999999999999999999999999999999999999999999999999 89998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.9e-19 Score=127.03 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.||+. .|.|+.|+|+++
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a 111 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQLV 111 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEEe
Confidence 36899999999999999999999999999999999998 9999999999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 84
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=1.2e-20 Score=142.11 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=108.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++. ++. .+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECCEEeeee
Confidence 44578999999999999999999999999999999999999999999999999999999999986 777 8999999999
Q ss_pred ecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC---CCC-CCCCCCCCC---CCCCCCccccCCCCccccCCC
Q 029736 85 LSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH---SMR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNV 157 (189)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~ 157 (189)
++........ .........+.+.++|..-. +.. +.....+.. ......+ ....+|||.|.+.
T Consensus 88 ~~~~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~F~~~ 156 (196)
T 1l3k_A 88 RAVSREDSQR----------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG-KKRGFAFVTFDDH 156 (196)
T ss_dssp ECCC---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSH
T ss_pred cccCcccccc----------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC-CccceEEEEECCH
Confidence 9865422111 11112226788999987211 100 011111100 0000000 0112689999999
Q ss_pred ccccccccccCcccC
Q 029736 158 TNYDYSRRVFGATLD 172 (189)
Q Consensus 158 ~~~~~a~~~~g~~~~ 172 (189)
++++.|...+|..|+
T Consensus 157 ~~A~~A~~~~~~~~~ 171 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVN 171 (196)
T ss_dssp HHHHHHHHCSCCEET
T ss_pred HHHHHHHHhCCcEEC
Confidence 999999444677666
No 85
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=9.7e-20 Score=120.05 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
+.-|||+||++.++|++|+++|.+||+|.++++.. +||||||+|.++++|.+|++.||+. .+.|+.|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~-~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNC-VLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEECC
Confidence 56799999999999999999999999999999965 5799999999999999999999998 9999999999884
No 86
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-20 Score=138.29 Aligned_cols=148 Identities=21% Similarity=0.347 Sum_probs=108.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCC
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~ 88 (189)
++|||+|||+++++++|+++|++||.|.++.+++++ +++++|||||+|.+.++|++|++.|++. .+.|+.|+|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGK-QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCC-ccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999996 5789999999999999999999999998 99999999999865
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC---CCC-CCCCCCCCC---CCCCCCccccCCCCccccCCCcccc
Q 029736 89 DKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH---SMR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNYD 161 (189)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~~ 161 (189)
.... .......+.+.++|..-. +.. +.....+.. ......+ .....||+.|.+.++++
T Consensus 79 ~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 79 SQQS--------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-SSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp CCCC--------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-CEEEEEEEEESCHHHHH
T ss_pred CCCC--------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC-CcceEEEEEeCCHHHHH
Confidence 3221 112226788888886211 100 001000000 0000000 01126899999999999
Q ss_pred cc-ccccCcccCC
Q 029736 162 YS-RRVFGATLDS 173 (189)
Q Consensus 162 ~a-~~~~g~~~~~ 173 (189)
.| ..++|..+++
T Consensus 144 ~A~~~l~g~~~~g 156 (166)
T 3md3_A 144 NAMDSMQGQDLNG 156 (166)
T ss_dssp HHHHHHTTCEETT
T ss_pred HHHHHhCCCccCC
Confidence 99 7799998874
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-20 Score=121.37 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.++ . .++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999999 6 899999999876
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8e-20 Score=126.65 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCcHHHHH---HHHhcCCCeEEEEEecCCCCC---CcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 8 GCNVYIGNLDEKVSERVLY---DILIQAGRVVDLYIPRDKETD---KPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~---~~F~~~G~i~~~~~~~~~~~~---~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
.++|||+|||+.+++++|+ ++|++||.|..|.|++++.++ +++|||||+|.+.++|++|++.||+. .|+|+.|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~-~~~gr~l 93 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV-VVDGRTL 93 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE-EETTEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC-EECCEEE
Confidence 6899999999999999999 999999999999999987644 56699999999999999999999998 9999999
Q ss_pred EEEecCCCC
Q 029736 82 RFALSGQDK 90 (189)
Q Consensus 82 ~v~~~~~~~ 90 (189)
+|.++..+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999997754
No 89
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=122.89 Aligned_cols=77 Identities=30% Similarity=0.479 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCC
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~ 88 (189)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.|++. .+.|+.|+|.+++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK-VICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS-CSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC-eECCcEEEEEEccC
Confidence 58999999999999999999999999999999876 6899999999999999999999998 99999999999987
Q ss_pred CCC
Q 029736 89 DKN 91 (189)
Q Consensus 89 ~~~ 91 (189)
...
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.3e-20 Score=133.06 Aligned_cols=83 Identities=31% Similarity=0.521 Sum_probs=78.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+++
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~a~ 125 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQMAR 125 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC-CSSSSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECC
Confidence 678999999999999999999999999999999999889999999999999999999999999998 9999999999998
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 126 ~~~~ 129 (135)
T 2lea_A 126 YGRP 129 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=8.6e-21 Score=126.44 Aligned_cols=79 Identities=32% Similarity=0.534 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCC
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~ 88 (189)
++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.+ |++|++.||+. .++|+.|+|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~-~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT-DFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS-CCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC-EECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999998 99999999999876
Q ss_pred C
Q 029736 89 D 89 (189)
Q Consensus 89 ~ 89 (189)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 92
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=124.62 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEe
Q 029736 8 GCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~-~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~ 85 (189)
.++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.|++. ..|.|++|+|.+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 78999999999 9999999999999999999999876 389999999999999999999864 269999999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
++..+
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 97643
No 93
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=121.74 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~~ 86 (189)
+++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.|++. +.|.|++|+|+++
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 789999999999999999999999999999999753 599999999999999999999986 3488999999999
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 94
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=127.55 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCe-EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRV-VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i-~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v 83 (189)
+...++|||+|||+.+++++|+++|++||.| ..|+|++|+ +++++|||||+|.+.++|++||+. |+. .|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCCeEEEE
Confidence 4457899999999999999999999999999 889999998 999999999999999999999997 997 999999999
Q ss_pred EecCCCC
Q 029736 84 ALSGQDK 90 (189)
Q Consensus 84 ~~~~~~~ 90 (189)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987543
No 95
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=126.49 Aligned_cols=78 Identities=21% Similarity=0.343 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~~ 86 (189)
.++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++. ..|.|++|+|.++
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 789999999999999999999999999999999875 699999999999999999988742 3799999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+.+..
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 76543
No 96
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-19 Score=121.12 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC-----eEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN-----RTL 81 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g-----~~l 81 (189)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+. .|.| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE-EEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC-CccCCcCcceEE
Confidence 4789999999999999999999999999999999876 89999999999999999999998 9999 999
Q ss_pred EEEecCCCCCC
Q 029736 82 RFALSGQDKNT 92 (189)
Q Consensus 82 ~v~~~~~~~~~ 92 (189)
+|.++......
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999875443
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=124.93 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
....++|||+|||..+++++|+++|++||.|..|+++.++ +.++|||||+|.+.++|++|++.|+|. .|+|+.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 3447899999999999999999999999999999999885 458999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
+++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 98
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=123.40 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~-~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
...++|||+|||+.+++++|+++|++||.|.. +.|+.+ .+++++|||||+|.+.++|++||+. ++. .|+|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCCcEEEEE
Confidence 34789999999999999999999999999987 889888 7899999999999999999999997 887 9999999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
.+...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87653
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.8e-19 Score=133.21 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.||+. .|.|+.|+|.++.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVDWCF 150 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEEec
Confidence 568999999999999999999999999999999999999999999999999999999999999998 9999999999987
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
....
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6433
No 100
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=120.57 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC-EeCCeEEEEEE
Confidence 347999999999999999999999999976 56666 68899999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 977533
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=123.71 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCe-E
Q 029736 8 GCNVYIGNLDEKV------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR-T 80 (189)
Q Consensus 8 ~~~l~V~nL~~~~------~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~-~ 80 (189)
.++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|++|++.|||. .|.|+ .
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~~~g~~~ 91 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHT 91 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE-ECSTTCE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc-ccCCCce
Confidence 6899999999999 789999999999999999998 368999999999999999999999999998 99998 9
Q ss_pred EEEEecCCC
Q 029736 81 LRFALSGQD 89 (189)
Q Consensus 81 l~v~~~~~~ 89 (189)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998653
No 102
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=5.4e-20 Score=140.80 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=110.0
Q ss_pred CCeEEEcCCC-CCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLD-EKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~-~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
+++|||+||| +.+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|++|++.|||. .+.|+.|+|.++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~v~~s 77 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN-FMFGQKMNVCVS 77 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEEEc
Confidence 7899999999 89999999999999999999999876 3799999999999999999999998 999999999998
Q ss_pred CCCCCCCCCC--CC-cCC-------C-CCC---------CC-CCCCCcccCCCCCC---CCCCCC-CCCCCCC--CCCCC
Q 029736 87 GQDKNTQNSS--MT-TTP-------L-SSR---------KS-RSDPVPVPVNGMEI---SHHSMR-ISGTRHY--SSEEP 139 (189)
Q Consensus 87 ~~~~~~~~~~--~~-~~~-------~-~~~---------~~-~~~~~~~~~~~~p~---~~~~~~-~~~~~~~--~~~~~ 139 (189)
+......... .. ..+ . ... .. .+....+.+.++|. ++++.. +.+...+ ..-..
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 7543211100 00 000 0 000 00 01114578888886 222210 0011111 00000
Q ss_pred CC-CccccCCCCccccCCCcccccc-ccccCcccCCccc
Q 029736 140 PP-PGVTHESNGYETHLNVTNYDYS-RRVFGATLDSISR 176 (189)
Q Consensus 140 ~~-~~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~~~~~ 176 (189)
.+ .+. ....|||.|.+.+++..| ..|+|..|++..-
T Consensus 158 ~~~~~~-~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 158 FSGKSE-RSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CSCCSS-SSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred EcCCCC-CceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 00 010 113799999999999999 8999999986653
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=124.39 Aligned_cols=81 Identities=30% Similarity=0.436 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee--------CC
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL--------YN 78 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~--------~g 78 (189)
..++|||+|||+.+++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++|++.|||. .| .+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~~~~ 101 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVSAPT 101 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCccccCCC
Confidence 47899999999999999999999999999999999997 9999999999999999999999999998 88 57
Q ss_pred eEEEEEecCCC
Q 029736 79 RTLRFALSGQD 89 (189)
Q Consensus 79 ~~l~v~~~~~~ 89 (189)
++|+|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999998753
No 104
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=8.4e-20 Score=131.06 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~---i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
+...++|||+|||+++++++|+++|++||. |..|+|++|+. |+++|||||+|.+.++|++||+ +|+. .|+|+.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~-~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE-SMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE-ESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-EECCEEE
Confidence 345789999999999999999999999999 88999999976 9999999999999999999999 9998 9999999
Q ss_pred EEEecCC
Q 029736 82 RFALSGQ 88 (189)
Q Consensus 82 ~v~~~~~ 88 (189)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998754
No 105
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=8.5e-20 Score=141.95 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G--~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
..++|||+||++.+++++|+++|++|| .|..|+|++|+.++++||||||+|.+.++|++||+.||+. .|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~-~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS-CBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-eECCEEeEEE
Confidence 367899999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCC
Q 029736 85 LSGQ 88 (189)
Q Consensus 85 ~~~~ 88 (189)
+++.
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=120.85 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceeeCCeEEEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS--GIVTLYNRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~--g~~~~~g~~l~v~~ 85 (189)
.++|||+|||+.+++++|+++|++||.|..|.++++ ||||||+|.+.++|++|++.|+ +. .|.|++|+|.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~-~~~Gr~l~V~~ 87 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTP-HLRNQPIYIQY 87 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCC-EETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCc-eECCcEEEEEE
Confidence 789999999999999999999999999999998865 6999999999999999999774 55 89999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 88 a~~~~~ 93 (101)
T 2cq1_A 88 SNHKEL 93 (101)
T ss_dssp CSCSSC
T ss_pred cCcccC
Confidence 976533
No 107
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=123.98 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+++++++|+++|++||. ..|+|++++ +++++|||||+|.+.++|++||+ +|+. .|+++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEE
Confidence 445789999999999999999999999995 499999997 89999999999999999999996 7998 9999999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 876543
No 108
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=126.88 Aligned_cols=80 Identities=24% Similarity=0.217 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~---i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
...++|||+|||+++++++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++||+ +++. .|+|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE-SMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE-EETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-eECCeEEE
Confidence 34789999999999999999999999998 89999999975 9999999999999999999999 9997 99999999
Q ss_pred EEecCC
Q 029736 83 FALSGQ 88 (189)
Q Consensus 83 v~~~~~ 88 (189)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998864
No 109
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-20 Score=120.11 Aligned_cols=73 Identities=27% Similarity=0.440 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCe-E
Q 029736 8 GCNVYIGNLDEKV------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR-T 80 (189)
Q Consensus 8 ~~~l~V~nL~~~~------~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~-~ 80 (189)
+++|||+|||..+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|++|++.|||. .|.|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC-CCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc-ccCCcee
Confidence 4789999999999 789999999999999999988 358999999999999999999999999998 99999 8
Q ss_pred EEE
Q 029736 81 LRF 83 (189)
Q Consensus 81 l~v 83 (189)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=117.53 Aligned_cols=78 Identities=24% Similarity=0.377 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.||+. .+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY-KLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC-ccCCcEEEEE
Confidence 3448999999999999999999999999999999986 589999999999999999999998 9999999999
Q ss_pred ecCCCCC
Q 029736 85 LSGQDKN 91 (189)
Q Consensus 85 ~~~~~~~ 91 (189)
+++....
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9977544
No 111
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=126.40 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEE
Q 029736 8 GCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~----~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v 83 (189)
.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++.|||. .|.|+.|+|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~-~l~gr~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY-PFQGNPLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC-CCTTSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC-EeCCCEEEE
Confidence 7899999999999999876 6999999999988753 5789999999999999999999999998 999999999
Q ss_pred EecCCC
Q 029736 84 ALSGQD 89 (189)
Q Consensus 84 ~~~~~~ 89 (189)
.+++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998764
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=2.1e-19 Score=121.23 Aligned_cols=79 Identities=28% Similarity=0.549 Sum_probs=73.7
Q ss_pred CCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEE
Q 029736 8 GCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~----~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v 83 (189)
.++|||+|||..+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|++|++.|||. .+.|+.|+|
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 83 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKPMRI 83 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC-EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC-EECCcEEEE
Confidence 8999999999999999999 9999999999999874 5678899999999999999999999998 999999999
Q ss_pred EecCCCC
Q 029736 84 ALSGQDK 90 (189)
Q Consensus 84 ~~~~~~~ 90 (189)
.+++...
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9997753
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=120.65 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~~ 86 (189)
.++|||+|||+.+++++|+++|++||.|..|.++++ ||||||+|.+.++|++|++.|++. +.|.|++|+|+++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 789999999999999999999999999999998764 699999999999999999988754 2599999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 76544
No 114
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.79 E-value=3.3e-19 Score=141.87 Aligned_cols=81 Identities=28% Similarity=0.543 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~----~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
...++|||+|||+.+++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++.||+. .|.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC-eeCCcEE
Confidence 348999999999999999977 8999999999999876 6789999999999999999999999998 9999999
Q ss_pred EEEecCCCC
Q 029736 82 RFALSGQDK 90 (189)
Q Consensus 82 ~v~~~~~~~ 90 (189)
+|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999987644
No 115
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=118.64 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC--CeEEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY--NRTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~--g~~l~v~ 84 (189)
..++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.||+. .|. |+.|+|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~-~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF-PLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC-BCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC-EeCCCCcEEEEE
Confidence 3789999999999999999999999999999999754 689999999999999999999998 899 9999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
++++..
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997753
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-20 Score=127.02 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|++ ||+. .|.|+.|+|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC-CBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc-EECCcEEEEEEc
Confidence 3789999999999999999999999999888 677777789999999999999999999999 9998 999999999998
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
.....
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76543
No 117
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=7e-20 Score=117.84 Aligned_cols=75 Identities=19% Similarity=0.373 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 10 NVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 10 ~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
+|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++. ++. .+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH-NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC-CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC-eECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999995 776 899999998864
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.32 Aligned_cols=78 Identities=19% Similarity=0.471 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|++. .|.|+.|+|.++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-TIEGHVVKCYWG 96 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-EETTEECEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEec
Confidence 4789999999999999999999999999999999876 699999999999999999999998 999999999999
Q ss_pred CCCCC
Q 029736 87 GQDKN 91 (189)
Q Consensus 87 ~~~~~ 91 (189)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 77543
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=119.63 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++|+ .+.++.++.+++++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG-EIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 3478999999999999999999999774 6788888889999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987544
No 120
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=9.8e-20 Score=125.40 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE
Q 029736 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (189)
Q Consensus 4 ~~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~---i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~ 80 (189)
.+...++|||+|||+++++++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++||+ +++. .|+|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM-YMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC-CSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc-eeCCeE
Confidence 3455789999999999999999999999998 89999999976 9999999999999999999999 9998 999999
Q ss_pred EEEEecCC
Q 029736 81 LRFALSGQ 88 (189)
Q Consensus 81 l~v~~~~~ 88 (189)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998764
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=3.7e-18 Score=116.52 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|++. .|.|+.|+|.+++
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVFAK 81 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC-ccCCCEEEEEEcC
Confidence 6899999999999999999999999999999986 369999999999999999999998 9999999999998
Q ss_pred CCCCCC
Q 029736 88 QDKNTQ 93 (189)
Q Consensus 88 ~~~~~~ 93 (189)
......
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 765443
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.9e-19 Score=120.87 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||..+++++|+++|++||.|.++++.+ ++|||||+|.+.++|++|++.||+. .++|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANF-PFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTC-EETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 34478999999999999999999999999999999973 5699999999999999999999998 9999999999
Q ss_pred ecCC
Q 029736 85 LSGQ 88 (189)
Q Consensus 85 ~~~~ 88 (189)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8865
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=121.26 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++| .|..|.|+.|+. |+++|||||+|.+.++|++|| .+|+. .|+||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 4689999999999999999999999 899999999975 999999999999999999999 59998 9999999998875
Q ss_pred C
Q 029736 88 Q 88 (189)
Q Consensus 88 ~ 88 (189)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=114.10 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNT-EFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEE
Confidence 3478999999999999999999999999999999964 49999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 977543
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.4e-18 Score=120.81 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|++|++.|||. .++|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF-NVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-BSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEe
Confidence 3899999999999999999999999999999999876 456899999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 754
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.2e-18 Score=120.23 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||. .++|+.|+|.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK-SFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 347899999999999999999999999999999987 689999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 977543
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=2.4e-18 Score=116.38 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~-~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.||+. .+.|+.|+|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE-MNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS-EETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEe
Confidence 489999999998 99999999999999999999983 699999999999999999999998 99999999999
Q ss_pred cCCC
Q 029736 86 SGQD 89 (189)
Q Consensus 86 ~~~~ 89 (189)
++..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-19 Score=125.72 Aligned_cols=84 Identities=26% Similarity=0.373 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|++.|++. .|.|+.|+|.++.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY-KLYGKILVIEFGK 103 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC-BCSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEEcc
Confidence 689999999999999999999999999843322222237889999999999999999999999998 9999999999998
Q ss_pred CCCCC
Q 029736 88 QDKNT 92 (189)
Q Consensus 88 ~~~~~ 92 (189)
.....
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 75443
No 129
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=114.28 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|||+.+++++|+++|++||.|..+.+++ +||||+|.+.++|++|++.||+. .|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGK-EVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEE
Confidence 44578999999999999999999999999999999974 49999999999999999999998 9999999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
+++...
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997753
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-20 Score=128.65 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++||+ ||+. .|+|+.|+|.++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ-YMGNRFIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB-CSTTSCBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEEEC
Confidence 36899999999999999999999999999886666666799999999999999999999999 9998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 131
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=5.4e-20 Score=135.93 Aligned_cols=149 Identities=15% Similarity=0.228 Sum_probs=107.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCC--CcceEEEEEeCCHHHHHHHHHHcCCceeeC---CeEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETD--KPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTL 81 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~--~~kg~afV~f~~~~~a~~al~~l~g~~~~~---g~~l 81 (189)
+.++|||+|||+++++++|+++|++||.|.++++++++.++ +++|||||+|.+.++|++|++.|++. .+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccce
Confidence 47899999999999999999999999999999999998776 89999999999999999999999997 554 4577
Q ss_pred EEEecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC---CCC-CCCCCCCCC---CCCCCCccccCCCCcccc
Q 029736 82 RFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH---SMR-ISGTRHYSS---EEPPPPGVTHESNGYETH 154 (189)
Q Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~ 154 (189)
.+.++...... ......+.+.++|..-. +.. +.....+.. ... +.+ ....+|||.|
T Consensus 81 ~~~~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g-~~~g~afV~f 143 (175)
T 3nmr_A 81 QMKPADSEKNN---------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDG-LSRGCAFVTF 143 (175)
T ss_dssp EEEECGGGCCS---------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTS-CEEEEEEEEE
T ss_pred EEccccccccc---------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCC-CEEEEEEEEE
Confidence 77776543211 11225788888887211 100 001101100 000 001 0122689999
Q ss_pred CCCcccccc-ccccCcccCC
Q 029736 155 LNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 155 ~~~~~~~~a-~~~~g~~~~~ 173 (189)
.+.+++..| ..++|..+..
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHHhcCCcccC
Confidence 999999999 8999987764
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=118.42 Aligned_cols=78 Identities=31% Similarity=0.451 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a 91 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGL-RLGTDTLRVALA 91 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTC-CSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 378999999999999999999999999986 666643 68899999999999999999999998 999999999999
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
+..+
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=113.72 Aligned_cols=75 Identities=17% Similarity=0.351 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHc-CCceeeCCeEEEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLRFA 84 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l-~g~~~~~g~~l~v~ 84 (189)
...++|||+|||..+++++|+++|++||.|..+.++++ +|||||+|.+.++|++|++.| ++. .+.|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECCCEEEEE
Confidence 34789999999999999999999999999999999864 699999999999999999998 887 9999999999
Q ss_pred ecC
Q 029736 85 LSG 87 (189)
Q Consensus 85 ~~~ 87 (189)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=117.22 Aligned_cols=78 Identities=22% Similarity=0.501 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+.+++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++.|++. .|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM-PLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC-CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC-EeCCceEEEEE
Confidence 34789999999999999999999999999999999865 599999999999999999999998 99999999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
++...
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97753
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=2.9e-19 Score=121.75 Aligned_cols=78 Identities=21% Similarity=0.402 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++ ++. .|+|+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~-~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQI-NFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCC-EETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCC-eECCEEEEEEECC
Confidence 6899999999999999999999999999999999998 99999999999999999999999 887 9999999999886
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 136
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.7e-19 Score=123.34 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=72.5
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCC----HHH----HHHHHH--HcCCce
Q 029736 9 CNVYIGNL----DEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES----EEI----ADYAIK--LFSGIV 74 (189)
Q Consensus 9 ~~l~V~nL----~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~----~~~----a~~al~--~l~g~~ 74 (189)
++|||+|| |+.+++++|+.+|++||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 68999999 9999999999999999999999999999999999999999996 433 888888 78998
Q ss_pred eeCCeEEEEEecCCC
Q 029736 75 TLYNRTLRFALSGQD 89 (189)
Q Consensus 75 ~~~g~~l~v~~~~~~ 89 (189)
.|+|+.|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987653
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=116.44 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC-eEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCC-ceeeCCeEEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGR-VVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG-IVTLYNRTLRF 83 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~-i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g-~~~~~g~~l~v 83 (189)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ . .|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKV-ELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTC-EETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCe-eECCEEEEE
Confidence 34789999999999999999999999999 5555552 469999999999999999999999 7 999999999
Q ss_pred EecCCCCC
Q 029736 84 ALSGQDKN 91 (189)
Q Consensus 84 ~~~~~~~~ 91 (189)
.+++....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99977533
No 138
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-19 Score=122.26 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEe
Q 029736 8 GCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~-~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~ 85 (189)
.++|||+|||++ +++++|+++|++||.|.+|.|++ +||||||+|.+.++|++|++.|++. ..|.|+.|+|.+
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 889999999998 99999999999999999999975 3699999999999999999988642 269999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+.....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 876543
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-20 Score=130.03 Aligned_cols=85 Identities=22% Similarity=0.359 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN 78 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~--------~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g 78 (189)
..++|||+|||..+++++|+++|++||.|.. |.++.++.+++++|||||+|.+.++|++|++.||+. .|.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EFSG 84 (116)
Confidence 3789999999999999999999999999998 899999889999999999999999999999999998 9999
Q ss_pred eEEEEEecCCCCCC
Q 029736 79 RTLRFALSGQDKNT 92 (189)
Q Consensus 79 ~~l~v~~~~~~~~~ 92 (189)
+.|+|.+++.....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998775443
No 140
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=4.8e-19 Score=137.32 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=107.4
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~-~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|++. .|.|+.|+|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC-BCSSSBCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 378999999999 99999999999999999999998874 789999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCC-----------------CCcCCCCCC--CCCCCCCcccCCCCCCCCC---CCCCCCCCCCCCCCCC-CC
Q 029736 86 SGQDKNTQNSS-----------------MTTTPLSSR--KSRSDPVPVPVNGMEISHH---SMRISGTRHYSSEEPP-PP 142 (189)
Q Consensus 86 ~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~-~~ 142 (189)
+.......... ....+.... ...+....+.+.++|..-. +..+. .+.+ .+
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-------~~~G~~i 179 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-------SSNGGVV 179 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-------HTTSCCE
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-------HHcCCCe
Confidence 87542111000 000000000 0011125677888886211 10000 0111 11
Q ss_pred ccc-----cCCCCccccCCCcccccc-ccccCcccC
Q 029736 143 GVT-----HESNGYETHLNVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 143 ~~~-----~~~~Gy~~~~~~~~~~~a-~~~~g~~~~ 172 (189)
..+ ...+|||.|.+.+++..| ..++|..++
T Consensus 180 ~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 180 KGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp EEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred eEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 100 224899999999999999 789999986
No 141
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=134.03 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=106.7
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~-~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|++|++.|++. .+.|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC-CCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-eecCeEEEEEEe
Confidence 68999999999 99999999999999999999998874 789999999999999999999998 999999999998
Q ss_pred CCCCCCCCCC-----------------CCcCCCCCCC-C-CCCCCcccCCCCCCCCCC---CC-CCCCC-CCCCCCCCCC
Q 029736 87 GQDKNTQNSS-----------------MTTTPLSSRK-S-RSDPVPVPVNGMEISHHS---MR-ISGTR-HYSSEEPPPP 142 (189)
Q Consensus 87 ~~~~~~~~~~-----------------~~~~~~~~~~-~-~~~~~~~~~~~~p~~~~~---~~-~~~~~-~~~~~~~~~~ 142 (189)
.......... ....+..... . .+....+.+.++|..-.. .. +.... .+..-...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~- 155 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ- 155 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS-
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe-
Confidence 7542211000 0000000000 0 111256778888862111 00 00000 000000000
Q ss_pred ccccCCCCccccCCCcccccc-ccccCcccC
Q 029736 143 GVTHESNGYETHLNVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 143 ~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~ 172 (189)
.....|||.|.+.+++..| ..++|..++
T Consensus 156 --~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 156 --KDRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp --TTSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred --CCCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 0124899999999999999 789999986
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=113.83 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+++++++|+++|++||.|..| +.++.+++ ||||+|.+.++|++|++ |++. .|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~-~~~g~~l~V~~ 78 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH-SLGGHRLRVRP 78 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC-EETTEECCCBC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe-EECCEEEEEEE
Confidence 346899999999999999999999999999987 55555555 99999999999999999 9998 99999999997
Q ss_pred cCCC
Q 029736 86 SGQD 89 (189)
Q Consensus 86 ~~~~ 89 (189)
+...
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7553
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=1.7e-18 Score=129.57 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQLVA 165 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC-BCSSSBCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEec
Confidence 6899999999999999999999999999999999997 8999999999999999999999999998 9999999999986
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 144
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=118.71 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=69.4
Q ss_pred CCeEEE--cCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee-----CCeE
Q 029736 8 GCNVYI--GNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL-----YNRT 80 (189)
Q Consensus 8 ~~~l~V--~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~-----~g~~ 80 (189)
.++||| |||++.+++++|+++|++||.|..|.++.+ ||||||+|.+.++|++|++.|||. .+ .|++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg~g~~ 97 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKIT 97 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTC-EEECTTSCEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCC-EEccccCCCcE
Confidence 789999 889999999999999999999999988643 699999999999999999999998 77 6889
Q ss_pred EEEEecCCCCC
Q 029736 81 LRFALSGQDKN 91 (189)
Q Consensus 81 l~v~~~~~~~~ 91 (189)
|.|.++...+.
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999875433
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=117.65 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|++. .|.|+.|+|.++.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYYTG 89 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEE-EETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEcC
Confidence 6899999999999999999999999987666 257889999999999999999999999997 9999999999987
Q ss_pred CCC
Q 029736 88 QDK 90 (189)
Q Consensus 88 ~~~ 90 (189)
+..
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 146
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=9.1e-19 Score=123.96 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE--EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVV--DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~--~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
+...++|||+|||+++++++|+++|++| .|. .|+|++|+. |+++|||||+|.+.++|++||+. ++. .|+|+.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~-~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE-RIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC-CBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC-EECCEEEE
Confidence 3457899999999999999999999999 577 899999976 99999999999999999999995 666 89999999
Q ss_pred EEecCC
Q 029736 83 FALSGQ 88 (189)
Q Consensus 83 v~~~~~ 88 (189)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987753
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.8e-19 Score=128.76 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||+++++++|+++|++|| |+.|+|++|+. ++++|||||+|.+.++|++|| .+|+. .|+|+.|+|..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA-NMQHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC-SSSSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC-EECCEEEEEEE
Confidence 3468999999999999999999999999 67999999975 999999999999999999999 68998 99999999998
Q ss_pred cCCC
Q 029736 86 SGQD 89 (189)
Q Consensus 86 ~~~~ 89 (189)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8664
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.6e-18 Score=123.47 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|||. .++|+.|+|.++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-ccCCcEEEEEec
Confidence 3789999999999999999999999999999999999889999999999999999999999999998 999999999998
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=113.06 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC--CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQA--GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~--G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK-VLDGSPIEVTL 85 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE-EETTEEEEEEC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 6899999999999999999999999 999999874 579999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 977543
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2.8e-18 Score=124.79 Aligned_cols=77 Identities=32% Similarity=0.547 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||. .|+|+.|+|.++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a 145 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR-TLCGCRVRVELS 145 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-CSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEc
Confidence 3689999999999999999999999999999999876 5799999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
++.
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 151
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=1.8e-18 Score=137.72 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=113.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|++. .++|+.|.|.++.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-PLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEECC
Confidence 689999999999999999999999999999999999889999999999999999999999999998 9999999999986
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCC-CCC---C-CCCCCCCCCCCCC--CCCccccCCCCccccCCCccc
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEIS-HHS---M-RISGTRHYSSEEP--PPPGVTHESNGYETHLNVTNY 160 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~---~-~~~~~~~~~~~~~--~~~~~~~~~~Gy~~~~~~~~~ 160 (189)
...... .......+.+.++|.. ... . -+.....+..-.. .+.| .....|||.|.+.+++
T Consensus 174 ~~~~~~-------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g-~~~g~afV~f~~~~~A 239 (284)
T 3smz_A 174 AGQLTP-------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDG-QLKGFAVLEYETAEMA 239 (284)
T ss_dssp GGGCCT-------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSC-CEEEEEEEECSSHHHH
T ss_pred CCCCCc-------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCC-CcccEEEEEeCCHHHH
Confidence 542211 1122367888888873 121 1 1111111110000 0001 0123789999999999
Q ss_pred ccc-ccccCcccCC
Q 029736 161 DYS-RRVFGATLDS 173 (189)
Q Consensus 161 ~~a-~~~~g~~~~~ 173 (189)
..| ..++|..|++
T Consensus 240 ~~A~~~l~g~~~~g 253 (284)
T 3smz_A 240 EEAQQQADGLSLGG 253 (284)
T ss_dssp HHHHHHHTTCEETT
T ss_pred HHHHHHhCCCccCC
Confidence 999 7899999873
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=122.96 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCe----EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRV----VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i----~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
+.++|||+|||+++++++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. ++. .|+|+.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCeEEE
Confidence 37899999999999999999999999975 68999998 4899999999999999999999996 887 99999999
Q ss_pred EEecCC
Q 029736 83 FALSGQ 88 (189)
Q Consensus 83 v~~~~~ 88 (189)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=4.8e-18 Score=117.28 Aligned_cols=74 Identities=34% Similarity=0.508 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~-~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|++. .|+|+.|+|.++
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~a 97 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGR-VLAGQTLDINMA 97 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-EETTEECCEEES
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEC
Confidence 489999999999 999999999999999999988 4699999999999999999999998 999999999999
Q ss_pred CCCC
Q 029736 87 GQDK 90 (189)
Q Consensus 87 ~~~~ 90 (189)
+..+
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 154
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=5.9e-20 Score=136.17 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=107.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEE
Q 029736 4 NSNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (189)
Q Consensus 4 ~~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v 83 (189)
.+...++|||+|||+.+++++|+++|.+||.+.. .++.+..+++++|||||+|.+.++|++|++ |++. .+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGE-EETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCC-EeCCeEEEE
Confidence 4556899999999999999999999999997766 344555678999999999999999999995 9998 999999999
Q ss_pred EecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCC---CCCC-CCCCCCCCCCCCCCCccccCCCCccccCCCcc
Q 029736 84 ALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISH---HSMR-ISGTRHYSSEEPPPPGVTHESNGYETHLNVTN 159 (189)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~Gy~~~~~~~~ 159 (189)
.++...... .......+.+.++|..- ++.. +.....+. .. ........+|||.|.+.++
T Consensus 86 ~~~~~~~~~--------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~--~~-~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 86 EKPKGRDSK--------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIR--LV-SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp ECCCCSSCS--------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE--EE-CSSSSCCSEEEEECSSHHH
T ss_pred ecCCCcccc--------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE--Ee-cCCCCCceEEEEEECCHHH
Confidence 998664221 01122678888888621 1110 11110000 00 0000112268899999999
Q ss_pred cccc-ccccCcccCC
Q 029736 160 YDYS-RRVFGATLDS 173 (189)
Q Consensus 160 ~~~a-~~~~g~~~~~ 173 (189)
+..| ..++|..|++
T Consensus 149 A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 149 AEKNLEEKQGAEIDG 163 (175)
T ss_dssp HHHHHHHHTEEEETT
T ss_pred HHHHHHHhCCCEECC
Confidence 9999 7799998874
No 155
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=6.2e-18 Score=142.72 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=77.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||. .|.|+.|.|.++.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK-KIDGRRVLVDVER 180 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC-EECCEEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999999999998 9999999999997
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 64
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=6.3e-19 Score=127.25 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEE--EecC---CCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLY--IPRD---KETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~--~~~~---~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
.++|||+|||+.+++++|+++|++||.|..+. ++.+ ..+++++|||||+|.+.++|.+|++.|||. .|.|+.|+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~ 123 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY-VLFGKPMV 123 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB-EETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC-EeCCcEEE
Confidence 78999999999999999999999999987641 1111 247899999999999999999999999998 99999999
Q ss_pred EEecCCCCC
Q 029736 83 FALSGQDKN 91 (189)
Q Consensus 83 v~~~~~~~~ 91 (189)
|.+++....
T Consensus 124 V~~a~~~~~ 132 (143)
T 3egn_A 124 VQFARSARP 132 (143)
T ss_dssp EEECCCSCC
T ss_pred EEECCCCCC
Confidence 999976433
No 157
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-18 Score=116.12 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDE-KVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~-~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|++. .+.|+.|+|.+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE-MNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-SCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEEE
Confidence 388999999998 99999999999999999999983 689999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
++....
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876543
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-17 Score=111.16 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 5 SNSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
+...++|||+|| .+++++|+++|++||.|..|.|. +++|||||+|.+.++|++|++.|++. .|.|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 334789999996 89999999999999999999984 46799999999999999999999998 9999999999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
++....
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 987653
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=8.6e-18 Score=123.90 Aligned_cols=80 Identities=24% Similarity=0.438 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||..+++++|+++|++||.|..+.++.++.+++++|+|||+|.+.++|++|++.|||. .++|+.|+|+++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC-EECCeEEEEEeC
Confidence 3689999999999999999999999999999999999889999999999999999999999999998 999999999987
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=1.7e-17 Score=121.91 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC--eEEEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN--RTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g--~~l~v~~ 85 (189)
..+|||+||++.+++++|+++|++||.|.+|.|..+ .++|||||+|.+.++|++|++.|||. .|.| +.|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~-~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB-CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC-EecCCCcEEEEEE
Confidence 467999999999999999999999999999998654 36799999999999999999999998 8965 9999999
Q ss_pred cCCC
Q 029736 86 SGQD 89 (189)
Q Consensus 86 ~~~~ 89 (189)
++..
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9875
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=7.7e-18 Score=111.74 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.||+. .+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY-SFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEEc
Confidence 37899999999999999999999999 99999884 57899999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 162
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=116.81 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|++|++.||+. .|.|+.|+|.++.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS-KFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC-EECCeEEEEEECC
Confidence 67999999999999999999999999999999864 5689999999999999999999998 9999999999986
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=114.23 Aligned_cols=77 Identities=29% Similarity=0.321 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE-EEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~-~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
.++|||+|||+.+++++|+++|++||.|..| .++.++.++ .|||+|.+.++|++|++.||+. .|.|+.|+|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a 89 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGF-QLENFTLKVAYI 89 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEc
Confidence 6899999999999999999999999999999 588876443 3999999999999999999998 999999999998
Q ss_pred CCC
Q 029736 87 GQD 89 (189)
Q Consensus 87 ~~~ 89 (189)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.1e-17 Score=127.66 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.||+. .|+|+.|+|.++.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-DLGGQYLRVGKAV 203 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BCSSSBCEEEECS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-EeCCcEEEEEEec
Confidence 689999999999999999999999999999999999889999999999999999999999999998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 204 ~~ 205 (216)
T 2qfj_A 204 TP 205 (216)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1.4e-17 Score=125.51 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34789999999999999999999999999999999999889999999999999999999999999998 99999999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97753
No 166
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=116.82 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCC---CCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKET---DKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~---~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcEEE
Confidence 3478999999999999999999999999999 888888777 7999999999999999999999883 47888888
Q ss_pred EEecC
Q 029736 83 FALSG 87 (189)
Q Consensus 83 v~~~~ 87 (189)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 77554
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=9.2e-18 Score=116.97 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE-----E
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT-----L 81 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~-----l 81 (189)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+. .|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-BCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-EECCcEeeeEEE
Confidence 3689999999999999999999999999999999875 89999999999999999999998 999988 7
Q ss_pred EEEecCCC
Q 029736 82 RFALSGQD 89 (189)
Q Consensus 82 ~v~~~~~~ 89 (189)
+|..+...
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776654
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=2.8e-17 Score=116.60 Aligned_cols=77 Identities=26% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceeeCC--eEEEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIADYAIKLFSGIVTLYN--RTLRFA 84 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~-afV~f~~~~~a~~al~~l~g~~~~~g--~~l~v~ 84 (189)
-..|||+||++.+++++|+++|++||.|.+|.+..+ .+|| |||+|.+.++|++|++.|||. .|.| +.|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEE
Confidence 467889999999999999999999999999988754 3687 999999999999999999998 9988 899999
Q ss_pred ecCCCC
Q 029736 85 LSGQDK 90 (189)
Q Consensus 85 ~~~~~~ 90 (189)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998753
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=7.8e-18 Score=123.55 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ +++. .++|+.|+|.++.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI-DFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE-CSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE-EeCCeEEEEeecC
Confidence 5689999999999999999999999999999999998899999999999999999999998 8887 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=3.2e-17 Score=109.17 Aligned_cols=75 Identities=24% Similarity=0.524 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGI-VTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~-~~~~g~~l~v~~ 85 (189)
..++|||+|||+++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++ +++. +.+.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 4789999999999999999999999999999999874 78999999999999984 3444 356799999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
+.+..
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87643
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.2e-17 Score=123.23 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++. ++. .|+|+.|.|.++.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~-~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-TVNGHNCEVRKAL 181 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC-EETTEECEEEECC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc-EECCEEEEEEecC
Confidence 58999999999999999999999999999999999988999999999999999999999986 787 9999999999987
Q ss_pred CCCCC
Q 029736 88 QDKNT 92 (189)
Q Consensus 88 ~~~~~ 92 (189)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 75443
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.6e-17 Score=126.19 Aligned_cols=79 Identities=28% Similarity=0.516 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|+|++|+ +.++|||||+|.+.++|++|++.|||. .|+|+.|+|.++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~-~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEcC
Confidence 5789999999999999999999999999999999884 457999999999999999999999998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=2.4e-17 Score=125.78 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=109.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||.++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.|++. .|.|+.|+|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV-MLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC-CCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC-eeCCeeEEEecCC
Confidence 479999999999999999999999999999999999889999999999999999999999999998 9999999998875
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCC---CCCC-CCCCCCCCC---CCCCCCccccCCCCccccCCCccc
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISH---HSMR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNY 160 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~ 160 (189)
........... ..........+.+.++|..- ++.. +.....+.. ......+ ....+|||.|.+.+++
T Consensus 107 ~~~~~~~~~~~-----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g-~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 107 NIGQAQPIIDQ-----LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG-KHKGYGFIEYEKAQSS 180 (216)
T ss_dssp CCGGGHHHHHH-----HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC-CEEEEEEEEESSHHHH
T ss_pred Cccccchhhhh-----hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC-CcCceEEEEecCHHHH
Confidence 53221100000 00001122678888888621 1110 011100000 0000000 0112689999999999
Q ss_pred ccc-ccccCcccCC
Q 029736 161 DYS-RRVFGATLDS 173 (189)
Q Consensus 161 ~~a-~~~~g~~~~~ 173 (189)
..| ..++|..|+.
T Consensus 181 ~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 181 QDAVSSMNLFDLGG 194 (216)
T ss_dssp HHHHHHHTTCBCSS
T ss_pred HHHHHHccCCEeCC
Confidence 999 7799999883
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=109.48 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCcHHH----HHHHHhcC-CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCe
Q 029736 5 SNSGCNVYIGNLDEKVSERV----LYDILIQA-GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (189)
Q Consensus 5 ~~~~~~l~V~nL~~~~~e~~----L~~~F~~~-G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~ 79 (189)
|+..+.|||+|||+.+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|||. .+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~-~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE-DVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC-CSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC-ccCCc
Confidence 33344599999999999987 56899999 599888 23 99999999999999999999999 99999
Q ss_pred EEEEEecCCCCC
Q 029736 80 TLRFALSGQDKN 91 (189)
Q Consensus 80 ~l~v~~~~~~~~ 91 (189)
+|+|++++....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999977543
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=3.5e-17 Score=107.96 Aligned_cols=71 Identities=30% Similarity=0.548 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~----G-------~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~ 75 (189)
..++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .||+. .
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~-~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI-I 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC-E
Confidence 37899999999999999999999999 8 8999998765 699999999999999999 99998 9
Q ss_pred eCCeEEEEEe
Q 029736 76 LYNRTLRFAL 85 (189)
Q Consensus 76 ~~g~~l~v~~ 85 (189)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=1.3e-17 Score=125.56 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=104.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~----G-------~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~ 76 (189)
.++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .||+. .|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~-~~ 75 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGI-IF 75 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTE-EE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCC-EE
Confidence 7899999999999999999999999 5 6666665 345799999999999999999 79998 99
Q ss_pred CCeEEEEEecCCCCCCCCCCC---CcCCCCCCCCC-CCCCcccCCCCCCCCCC---CC-CCCCCCCCC---CCCCCCccc
Q 029736 77 YNRTLRFALSGQDKNTQNSSM---TTTPLSSRKSR-SDPVPVPVNGMEISHHS---MR-ISGTRHYSS---EEPPPPGVT 145 (189)
Q Consensus 77 ~g~~l~v~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~p~~~~~---~~-~~~~~~~~~---~~~~~~~~~ 145 (189)
.|+.|+|.++........... ...+....... .....+.+.++|..-.. .. +.....+.. ......+ .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-~ 154 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-L 154 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-S
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-C
Confidence 999999998876533221110 01111111111 22278889999872111 00 000000000 0000000 0
Q ss_pred cCCCCccccCCCcccccc-ccccCcccCC
Q 029736 146 HESNGYETHLNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 146 ~~~~Gy~~~~~~~~~~~a-~~~~g~~~~~ 173 (189)
...+||+.|.+.++++.| ..++|..|++
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 122689999999999999 7799999873
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=6.1e-17 Score=118.72 Aligned_cols=79 Identities=32% Similarity=0.485 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC--eEEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN--RTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g--~~l~v~ 84 (189)
..++|||+|||..+++++|+++|++||.|..+.+++++.+++++|+|||+|.+.++|.+|++.|||. .+.| ++|+|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEEE
Confidence 3689999999999999999999999999999999999889999999999999999999999999998 8988 899998
Q ss_pred ec
Q 029736 85 LS 86 (189)
Q Consensus 85 ~~ 86 (189)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=7.6e-18 Score=124.19 Aligned_cols=141 Identities=17% Similarity=0.307 Sum_probs=101.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL 76 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~----G-------~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~ 76 (189)
.++|||+|||+++++++|+++|++| | .|..+.+.+ ++|||||+|.+.++|++|+ .|++. .+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~-~~ 75 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGI-IF 75 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTC-EE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCc-Ee
Confidence 7899999999999999999999999 6 777777754 4699999999999999999 79998 99
Q ss_pred CCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCC---CC-CCCCCCCCC---CCCCCCccccCCC
Q 029736 77 YNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHHS---MR-ISGTRHYSS---EEPPPPGVTHESN 149 (189)
Q Consensus 77 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~-~~~~~~~~~---~~~~~~~~~~~~~ 149 (189)
.|+.|+|.++..... ......+.+.++|..-.. .. +.....+.. ......+ ....+
T Consensus 76 ~g~~i~v~~~~~~~~----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g-~~~g~ 138 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-LSKGY 138 (172)
T ss_dssp TTEECEEECCSSCCC----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-SEEEE
T ss_pred cCceeeecCCcccCC----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC-CcceE
Confidence 999999988654311 112367888888872111 00 000000000 0000000 01126
Q ss_pred CccccCCCcccccc-ccccCcccCC
Q 029736 150 GYETHLNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 150 Gy~~~~~~~~~~~a-~~~~g~~~~~ 173 (189)
||+.|.+.++++.| ..++|..|++
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETT
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECC
Confidence 99999999999999 7799998874
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.6e-16 Score=112.06 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceeeCC--eEEEEEe
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIADYAIKLFSGIVTLYN--RTLRFAL 85 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~-afV~f~~~~~a~~al~~l~g~~~~~g--~~l~v~~ 85 (189)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|++|++.|||. .|.| +.|+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~-~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGA-DIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTC-CCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-EecCCCeEEEEEE
Confidence 45789999999999999999999999999998642 286 999999999999999999998 8987 6999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97653
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=108.52 Aligned_cols=76 Identities=22% Similarity=0.429 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++++.. .+.+.|+.|+|.++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~---~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE---DLIIKGISVHISNAE 76 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC---EEEETTEEEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC---CceeCCEEEEEEecC
Confidence 799999999999999999999999999999999865 689999999999999865332 246799999999987
Q ss_pred CCCC
Q 029736 88 QDKN 91 (189)
Q Consensus 88 ~~~~ 91 (189)
+...
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.6e-16 Score=109.07 Aligned_cols=80 Identities=19% Similarity=0.073 Sum_probs=71.9
Q ss_pred CCeEEEcCCCC-----CCcHHHHHHHHhcCCCeEEEEEecCCCC-CCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 8 GCNVYIGNLDE-----KVSERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 8 ~~~l~V~nL~~-----~~~e~~L~~~F~~~G~i~~~~~~~~~~~-~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
+++|+|.||.. +-++++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|++.|||. .++||.|
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~Gr~i 86 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGGRVV 86 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECCcEE
Confidence 89999999962 2368999999999999999999998654 689999999999999999999999999 9999999
Q ss_pred EEEecCC
Q 029736 82 RFALSGQ 88 (189)
Q Consensus 82 ~v~~~~~ 88 (189)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999864
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=5e-17 Score=119.21 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=105.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+++++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|++|++. +. .++|+.|.+.++.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCCeEccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999994 45 8999999988875
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCC---CC-CCCCCCCCCCCCCCCccc--cCCCCccccCCCcccc
Q 029736 88 QDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHHS---MR-ISGTRHYSSEEPPPPGVT--HESNGYETHLNVTNYD 161 (189)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~-~~~~~~~~~~~~~~~~~~--~~~~Gy~~~~~~~~~~ 161 (189)
..... .....+.+.++|..-.. .. +.....+..-.......+ ...+||+.|.+.++++
T Consensus 80 ~~~~~----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 80 PRDEQ----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp CHHHH----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred chhhc----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 43211 11146777777761111 00 001111110000000001 1127899999999999
Q ss_pred ccccccCcccCC
Q 029736 162 YSRRVFGATLDS 173 (189)
Q Consensus 162 ~a~~~~g~~~~~ 173 (189)
.|..++|..|++
T Consensus 144 ~A~~~~~~~~~g 155 (167)
T 2cjk_A 144 RVCQNKFIDFKD 155 (167)
T ss_dssp HHHHCSEECSSS
T ss_pred HHHhCCCEEeCC
Confidence 995588888774
No 183
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1e-16 Score=117.20 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE--EEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT--LRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~--l~v~~ 85 (189)
.++|||+|||..+++++|+++|++||.|..++++.++.+|.++|+|||+|.+.++|.+|++.|||. .+.|+. |+|.+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEEEe
Confidence 688999999999999999999999999999999999889999999999999999999999999998 999974 88877
Q ss_pred c
Q 029736 86 S 86 (189)
Q Consensus 86 ~ 86 (189)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=9.3e-17 Score=112.92 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 6 NSGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 6 ~~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
...++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.||+. .|.|+.|+|.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~-~~~g~~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVNI 107 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-BCSSCBCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 34789999996 69999999999999999999985 46799999999999999999999998 99999999999
Q ss_pred cCCCC
Q 029736 86 SGQDK 90 (189)
Q Consensus 86 ~~~~~ 90 (189)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87653
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.7e-17 Score=132.53 Aligned_cols=155 Identities=12% Similarity=0.240 Sum_probs=105.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G-~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+.+++++|+++|++|| .|..|.++.++. +.++|||||+|.+.++|.+|++.|++. .+.|+.|.|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL-KIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 368999999999999999999999999 999999999864 889999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCC-CCC---C-CCCCCCCCCC---CCCCC-CccccCCCCccccCC
Q 029736 86 SGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEIS-HHS---M-RISGTRHYSS---EEPPP-PGVTHESNGYETHLN 156 (189)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~---~-~~~~~~~~~~---~~~~~-~~~~~~~~Gy~~~~~ 156 (189)
+.+....... .........+.+.++|.. -.. . -+.....+.. ..... .+ ....+|||.|.+
T Consensus 194 a~~~~~~~~~---------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg-~~~g~afV~F~~ 263 (292)
T 2ghp_A 194 SNPLEKSKRT---------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS-FNNCCAFMVFEN 263 (292)
T ss_dssp CCCC------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC----CCCEEEEEEESS
T ss_pred CCCCcccccc---------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC-CCceEEEEEeCC
Confidence 8764332211 011222367888888853 111 0 0111111100 01000 00 011268999999
Q ss_pred CccccccccccCcccCC
Q 029736 157 VTNYDYSRRVFGATLDS 173 (189)
Q Consensus 157 ~~~~~~a~~~~g~~~~~ 173 (189)
.+++..|..++|..|++
T Consensus 264 ~~~A~~A~~l~g~~~~g 280 (292)
T 2ghp_A 264 KDSAERALQMNRSLLGN 280 (292)
T ss_dssp HHHHHHHGGGTTEEETT
T ss_pred HHHHHHHHHhcCCEECC
Confidence 99999999999988874
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.4e-16 Score=117.49 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC---CeEEEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTLRF 83 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~---g~~l~v 83 (189)
..++|||+|||..+++++|+++|++||.|..+.+++++ +|+++|||||+|.+.++|.+|++.|||. .+. +++|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA-QTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS-CCCTTCSSCCEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC-cccCCCCCCeEE
Confidence 36899999999999999999999999999999999995 6899999999999999999999999997 565 489999
Q ss_pred EecC
Q 029736 84 ALSG 87 (189)
Q Consensus 84 ~~~~ 87 (189)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=2e-16 Score=119.89 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||+.+++++|+++|++||.|..|+|+++. +++++|||||+|.+.++|++|++.++ . .++|+.|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-Q-KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-C-EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-C-eECCEEEEEEEhH
Confidence 4789999999999999999999999999999999985 58999999999999999999998665 4 7999999999876
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=3.8e-16 Score=115.48 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSG 87 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~ 87 (189)
.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||. .|+|+.|+|.++.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE-EETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEecC
Confidence 6899999999999999999999999988766 357899999999999999999999999998 9999999999987
Q ss_pred CC
Q 029736 88 QD 89 (189)
Q Consensus 88 ~~ 89 (189)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=5.3e-16 Score=123.87 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEecCCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEE
Q 029736 7 SGCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKE-TDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFA 84 (189)
Q Consensus 7 ~~~~l~V~nL~~~-~~e~~L~~~F~~~G~i~~~~~~~~~~-~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~ 84 (189)
..++|||+|||+. +++++|+++|++||.|..|+++.+.. ++.++|||||+|.+.++|.+|+ .|||. .|+|+.|+|.
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~-~~~g~~i~V~ 286 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS-LLGNREISVS 286 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE-EETTEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC-EECCcEEEEE
Confidence 3689999999999 99999999999999999999999875 5999999999999999999999 99998 9999999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
++.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98764
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.4e-16 Score=121.93 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCC---------cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee-
Q 029736 7 SGCNVYIGNLDEKV---------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL- 76 (189)
Q Consensus 7 ~~~~l~V~nL~~~~---------~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~- 76 (189)
..++||||||+..+ ++++|+++|++||.|.+|+|+.+ ||||||+|.+.++|+.|++.|++. .|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~-~l~ 205 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ-TLL 205 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC-CCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC-EEe
Confidence 37899999999998 79999999999999999999864 699999999999999999999998 88
Q ss_pred -----------CCeEEEEEecCCCC
Q 029736 77 -----------YNRTLRFALSGQDK 90 (189)
Q Consensus 77 -----------~g~~l~v~~~~~~~ 90 (189)
.|+.|.|.|++...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.5e-15 Score=120.82 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCC-cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEe
Q 029736 7 SGCNVYIGNLDEKV-SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~~~-~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~ 85 (189)
..++|||+|||+.+ ++++|+++|++||.|..+.++.++ +|+++|+|||+|.+.++|.+|++.|||. .|+|+.|+|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGL-SLGGSHLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCeEEEEEE
Confidence 37899999999995 999999999999999999999986 7999999999999999999999999998 99999999999
Q ss_pred cCCCCC
Q 029736 86 SGQDKN 91 (189)
Q Consensus 86 ~~~~~~ 91 (189)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 977543
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2.4e-15 Score=119.46 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC-CeEEEEEec
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRFALS 86 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~-g~~l~v~~~ 86 (189)
.++|||+|||..+++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|++.|||. .|. |+.|+|.|+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~~a 280 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGF-KITQNNAMKISFA 280 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCc-EeCCCCEEEEEEe
Confidence 6889999999999999999999999999999998663 589999999999999999999998 898 999999998
Q ss_pred C
Q 029736 87 G 87 (189)
Q Consensus 87 ~ 87 (189)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8e-15 Score=101.46 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCC-----------cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 029736 4 NSNSGCNVYIGNLDEKV-----------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72 (189)
Q Consensus 4 ~~~~~~~l~V~nL~~~~-----------~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g 72 (189)
.|...++|+|.||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34458999999994333 25899999999999999965 553 3799999999999999999999999
Q ss_pred ceeeCCeEEEEEecCCC
Q 029736 73 IVTLYNRTLRFALSGQD 89 (189)
Q Consensus 73 ~~~~~g~~l~v~~~~~~ 89 (189)
. .|+|+.|+|.++.+.
T Consensus 87 ~-~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 R-WFGGRQITAQAWDGT 102 (112)
T ss_dssp C-EETTEECEEEECCSC
T ss_pred C-EECCcEEEEEEeCCC
Confidence 8 999999999998764
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=4.2e-15 Score=101.89 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCeEEEcCC--CCCCc--------HHHHHHHHhcCCCeEEEEEecCCCC--CCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 029736 8 GCNVYIGNL--DEKVS--------ERVLYDILIQAGRVVDLYIPRDKET--DKPKGFAFVEYESEEIADYAIKLFSGIVT 75 (189)
Q Consensus 8 ~~~l~V~nL--~~~~~--------e~~L~~~F~~~G~i~~~~~~~~~~~--~~~kg~afV~f~~~~~a~~al~~l~g~~~ 75 (189)
++.|.+.|+ +.++. +++|++.|++||.|.++.|++++.+ ++++|++||+|.+.++|.+|++.|||. .
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-K 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-E
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-E
Confidence 889999998 33443 3789999999999999999988754 368999999999999999999999999 9
Q ss_pred eCCeEEEEEecCC
Q 029736 76 LYNRTLRFALSGQ 88 (189)
Q Consensus 76 ~~g~~l~v~~~~~ 88 (189)
++||.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2e-15 Score=115.37 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCe--EEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCe----EE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRV--VDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR----TL 81 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i--~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~----~l 81 (189)
.++|||+|||+.+++++|+++|++||.| .+++++.++ +.++|+|||+|.+.++|.+||..|||. .|.|+ ++
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~-~~~g~~~~~p~ 199 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHY-QMKNPNGPYPY 199 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC-EECCSSSSSCE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC-CccCCCCCcce
Confidence 5789999999999999999999999998 899998875 566799999999999999999999998 89887 45
Q ss_pred EEEe
Q 029736 82 RFAL 85 (189)
Q Consensus 82 ~v~~ 85 (189)
.|.+
T Consensus 200 ~vk~ 203 (205)
T 3tyt_A 200 TLKL 203 (205)
T ss_dssp ECEE
T ss_pred EEEe
Confidence 5544
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=9.8e-16 Score=104.87 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=63.5
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE
Q 029736 13 IGNLDEKVSERVLYDIL------------IQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (189)
Q Consensus 13 V~nL~~~~~e~~L~~~F------------~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~ 80 (189)
+.+|++.+++++|++.| ++||.|.+|.|++++ +++++|||||+|.+.++|++|++.|||. .++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~-~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR-WFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC-EETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC-EECCEE
Confidence 56677777777777666 999999999999985 4789999999999999999999999999 999999
Q ss_pred EEEEec
Q 029736 81 LRFALS 86 (189)
Q Consensus 81 l~v~~~ 86 (189)
|+|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=7.8e-15 Score=115.71 Aligned_cols=131 Identities=20% Similarity=0.341 Sum_probs=96.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEec
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALS 86 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~ 86 (189)
..++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..|++. .|.|+.|+|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~a 93 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGT-ILKSRPLRIRFA 93 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCc-EECCceeEeeec
Confidence 3579999999999999999999999999999999654 699999999999999999999998 999999999997
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC---CCC-CCCCCCCCC---CCCCCCccccCCCCccccCCCcc
Q 029736 87 GQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH---SMR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTN 159 (189)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~ 159 (189)
.. ...+.+.++|..-. +.. +.....+.. ... +.| ....+|||.|.+..+
T Consensus 94 ~~----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g-~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRG-RATGKGFVEFAAKPP 149 (261)
T ss_dssp CC----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTS-CEEEEEEEEESSHHH
T ss_pred cc----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCC-CcCcEEEEEeCCHHH
Confidence 53 13577777776211 100 000001100 000 001 012278999999999
Q ss_pred cccc-ccccC
Q 029736 160 YDYS-RRVFG 168 (189)
Q Consensus 160 ~~~a-~~~~g 168 (189)
+..| ..+++
T Consensus 150 A~~A~~~l~~ 159 (261)
T 3sde_A 150 ARKALERCGD 159 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999 77733
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=1e-14 Score=112.83 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC-CeEEEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G-~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~-g~~l~v~~ 85 (189)
.++|||+|||..+++++|+++|++|| .|..++++.+ .+|+|||+|.+.++|.+|++.|||. .++ |+.|+|.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~l~v~~ 224 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSF 224 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTC-BSSSSCBCEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCC-ccCCCCeEEEEE
Confidence 68999999999999999999999999 9999999653 3689999999999999999999998 899 99999999
Q ss_pred cCC
Q 029736 86 SGQ 88 (189)
Q Consensus 86 ~~~ 88 (189)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 875
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=111.40 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC-CeEEEEEe
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY-NRTLRFAL 85 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G-~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~-g~~l~v~~ 85 (189)
.++|||+|||..+++++|+++|++|| .|..++++.+ .+|+|||+|.+.++|.+|++.|||. .++ |+.|+|.+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~~ 193 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRVSF 193 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSS-CCSSCCSCCEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCC-ccCCCCeEEEEe
Confidence 78999999999999999999999999 9999999764 2699999999999999999999998 899 99999999
Q ss_pred cCC
Q 029736 86 SGQ 88 (189)
Q Consensus 86 ~~~ 88 (189)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 865
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1e-14 Score=114.99 Aligned_cols=81 Identities=23% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC---CeEEEEE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY---NRTLRFA 84 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~---g~~l~v~ 84 (189)
.++|||+|||..+++++|+++|++||.|..|.++.+ .+|+++|||||+|.+.++|.+|++.||+...+. +++|.|.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 689999999999999999999999999999999999 589999999999999999999999995431444 8999999
Q ss_pred ecCCC
Q 029736 85 LSGQD 89 (189)
Q Consensus 85 ~~~~~ 89 (189)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98764
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=1.8e-14 Score=100.73 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCeEEEcCCC--CCC---cHHHHHHHHhcCCCeEEEEEecCCC----CCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC
Q 029736 8 GCNVYIGNLD--EKV---SERVLYDILIQAGRVVDLYIPRDKE----TDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN 78 (189)
Q Consensus 8 ~~~l~V~nL~--~~~---~e~~L~~~F~~~G~i~~~~~~~~~~----~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g 78 (189)
+++|++.|+- .++ .+++|++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|++.|||. .++|
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EECC
Confidence 7899999984 222 3689999999999999999998864 4567899999999999999999999999 9999
Q ss_pred eEEEEEecCC
Q 029736 79 RTLRFALSGQ 88 (189)
Q Consensus 79 ~~l~v~~~~~ 88 (189)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=4.9e-14 Score=115.12 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=63.9
Q ss_pred CCeEEEcC--CCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceee---CCe--E
Q 029736 8 GCNVYIGN--LDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTL---YNR--T 80 (189)
Q Consensus 8 ~~~l~V~n--L~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~---~g~--~ 80 (189)
+++||||| |+..++|++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||. ++ .|+ .
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~~g~~~~ 90 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLGQKIT 90 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC-EEECTTSCEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-ccccccCCceE
Confidence 88999999 578999999999999999999987754 4699999999999999999999998 66 345 5
Q ss_pred EEEEecC
Q 029736 81 LRFALSG 87 (189)
Q Consensus 81 l~v~~~~ 87 (189)
|.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7778774
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=92.17 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=62.1
Q ss_pred CCeEEEcCCC-------CCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeE
Q 029736 8 GCNVYIGNLD-------EKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRT 80 (189)
Q Consensus 8 ~~~l~V~nL~-------~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~ 80 (189)
..+|-|.-.. ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|++|++.+++ +.++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g~~ 81 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---LVDNP 81 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---CSSSB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---CCCCe
Confidence 3456555433 458999999999999999999997 36889999999999999999998544 67999
Q ss_pred EEEEecCCCC
Q 029736 81 LRFALSGQDK 90 (189)
Q Consensus 81 l~v~~~~~~~ 90 (189)
|+|.+++...
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9999987653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=1.2e-12 Score=90.87 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCeEEEcCCCC--CC--------cHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeC
Q 029736 8 GCNVYIGNLDE--KV--------SERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLY 77 (189)
Q Consensus 8 ~~~l~V~nL~~--~~--------~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~ 77 (189)
++.|.+.|+=. +. .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|++|++.|||. .++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~-~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR-WFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC-EET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC-EEC
Confidence 77888888732 11 236889999999999999997663 5899999999999999999999999 999
Q ss_pred CeEEEEEecCC
Q 029736 78 NRTLRFALSGQ 88 (189)
Q Consensus 78 g~~l~v~~~~~ 88 (189)
||.|+|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5e-11 Score=78.49 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=61.5
Q ss_pred CCeEEEcCCCC----CCcH----HHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCe
Q 029736 8 GCNVYIGNLDE----KVSE----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNR 79 (189)
Q Consensus 8 ~~~l~V~nL~~----~~~e----~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~ 79 (189)
.-||+|.-.+. .+-. .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+|++ |||. .++||
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~-~v~Gr 76 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK-ELLNR 76 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC-EETTE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe-EeCCe
Confidence 56788876652 2323 6799999999999999999874 8999999999999999 9998 99999
Q ss_pred EEEEEecCCC
Q 029736 80 TLRFALSGQD 89 (189)
Q Consensus 80 ~l~v~~~~~~ 89 (189)
.|+|+.+++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998765
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.2e-11 Score=83.54 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCC-HHHHHHHHHHcC-CceeeCCeEEEEE
Q 029736 8 GCNVYIGNLDEK-VSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES-EEIADYAIKLFS-GIVTLYNRTLRFA 84 (189)
Q Consensus 8 ~~~l~V~nL~~~-~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~-~~~a~~al~~l~-g~~~~~g~~l~v~ 84 (189)
++.|||+||+.. +++++|+++|++||.|..|.+.++.. .|||.|.+ .++|.+|++.++ +.+.|.|..++++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 899999999999 99999999999999999999988753 59999999 899999999995 2248999988887
Q ss_pred ecC
Q 029736 85 LSG 87 (189)
Q Consensus 85 ~~~ 87 (189)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=3.2e-10 Score=87.04 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=60.6
Q ss_pred CcHHHHHHHHhcCCCeEEEEEecC----CCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCC
Q 029736 20 VSERVLYDILIQAGRVVDLYIPRD----KETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQ 88 (189)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~~~~~----~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~ 88 (189)
-.+++|++.|++||.|.++.+.++ +.+++++|++||+|.+.++|++|++.|||. .++||.|++.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCeEEEEEEcCH
Confidence 346789999999999999999844 445689999999999999999999999999 99999999998753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.3e-10 Score=74.95 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCC-----C-cH---HHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC
Q 029736 8 GCNVYIGNLDEK-----V-SE---RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN 78 (189)
Q Consensus 8 ~~~l~V~nL~~~-----~-~e---~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g 78 (189)
.-||+|.-++.. + .+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||+ |+|. .++|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~-~v~G 84 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM-KVKG 84 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS-EETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe-eeCC
Confidence 567889877632 2 21 5689999999999999999884 9999999999999999 9998 9999
Q ss_pred eEEEEEecC
Q 029736 79 RTLRFALSG 87 (189)
Q Consensus 79 ~~l~v~~~~ 87 (189)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.2e-07 Score=62.75 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC-----CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQA-----GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~-----G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
+.++|-+-|||..++.+.|+.+.+++ |.+..+.+..|- +-|+|+|.+...|-+|.-.|+|. +|.|+.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~-ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGS-QFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSE-EETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCe-eecCeEE
Confidence 36889999999999999999999999 999999998884 68999999999999999999998 9999999
Q ss_pred EEEec
Q 029736 82 RFALS 86 (189)
Q Consensus 82 ~v~~~ 86 (189)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 210
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.11 E-value=9.8e-08 Score=68.64 Aligned_cols=123 Identities=13% Similarity=0.016 Sum_probs=75.1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHc-CCceeeCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCC
Q 029736 46 TDKPKGFAFVEYESEEIADYAIKLF-SGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISHH 124 (189)
Q Consensus 46 ~~~~kg~afV~f~~~~~a~~al~~l-~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 124 (189)
..+-+|+++|+|.+.++|++|++.+ |+. .++| .+.+.++...........................+.|.++|..-.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 3467899999999999999999999 998 9999 999988765322111111111111111222237889999997221
Q ss_pred C---CC-CCCCCCCCCCCCCCCccccCCCCccccCCCcccccc-ccccCcccCC
Q 029736 125 S---MR-ISGTRHYSSEEPPPPGVTHESNGYETHLNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 125 ~---~~-~~~~~~~~~~~~~~~~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~~ 173 (189)
. .. +.....+..-.... . ...+|||.|.+.++++.| ..++|..|++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~-~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVAR-N--PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECS-S--SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred HHHHHHHHHhhCCEEEEEEee-C--CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 1 00 00000000000000 0 123799999999999999 7799998874
No 211
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.94 E-value=5.8e-07 Score=64.96 Aligned_cols=130 Identities=8% Similarity=0.044 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCCCcccC
Q 029736 37 DLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPV 116 (189)
Q Consensus 37 ~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (189)
.++|+++. ++++|||||+|.+.++|++|++.+++...+.+ .+.+............ ...............++|
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG---SHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCC-EEEEETTTTEEEEECC---CCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCC-cccccCcccccccccc---ccccccccCCCCCCEEEE
Confidence 45666664 36899999999999999999988876422333 2222211110000000 000111111222378899
Q ss_pred CCCCCCCCC---CC-CCCCCCCCC---CCCCCCccccCCCCccccCCCcccccc-ccccCcccCC
Q 029736 117 NGMEISHHS---MR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 117 ~~~p~~~~~---~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~~ 173 (189)
.++|..-.. .. +.....+.. ......+ ....+|||.|.+.++++.| ..++|..|++
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCT-TSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 999972111 00 000000000 0100001 1122789999999999999 7799998873
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=0.00014 Score=48.68 Aligned_cols=74 Identities=5% Similarity=0.028 Sum_probs=62.5
Q ss_pred CCeEEEcCCCCCC-c----HHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEE
Q 029736 8 GCNVYIGNLDEKV-S----ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLR 82 (189)
Q Consensus 8 ~~~l~V~nL~~~~-~----e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~ 82 (189)
.++|+|.||+.++ . .+.++++|.+|+.+....+.+.= .-..|.|.++++|.+|-..|++. .++|++|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~-~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKT-EFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTS-EETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccc-eecCceeE
Confidence 5789999998766 2 25789999999999888877642 24579999999999999999998 99999999
Q ss_pred EEecCC
Q 029736 83 FALSGQ 88 (189)
Q Consensus 83 v~~~~~ 88 (189)
|=++..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998863
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=0.00057 Score=45.63 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC-----CCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEE
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQA-----GRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTL 81 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~-----G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l 81 (189)
.+++|.|.|||+.+.++.|+-+|++- |.|..++... +-|+|+|.+.+.|++.|+.-. +.|++.+|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~--H~L~~~~L 76 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD--HELHGAQL 76 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC--CBSSSSBC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc--ceecCeEE
Confidence 47899999999999999999999972 5888887643 478999999999999987533 36889888
Q ss_pred EEEec
Q 029736 82 RFALS 86 (189)
Q Consensus 82 ~v~~~ 86 (189)
.|...
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 88654
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.72 E-value=0.00046 Score=45.28 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=60.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCC--cceEEEEEeCCHHHHHHHHHHcCCceeeCCe----EEE
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDK--PKGFAFVEYESEEIADYAIKLFSGIVTLYNR----TLR 82 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~--~kg~afV~f~~~~~a~~al~~l~g~~~~~g~----~l~ 82 (189)
++|.|.+||+.+||+++.+.+.....+.....+..+.+.+ .-+-|+|.|.+.+++..-.+.++|.+.++.+ ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999988777666655543332 3367899999999999999999998444433 334
Q ss_pred EEecC
Q 029736 83 FALSG 87 (189)
Q Consensus 83 v~~~~ 87 (189)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.72 E-value=0.0001 Score=48.75 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=47.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l 70 (189)
...+++ .+|.++...||.++|+.|| -..|+|+-| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 456777 9999999999999999999 446888887 48999999999999999876
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.44 E-value=0.00016 Score=47.95 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFS 71 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~ 71 (189)
..++| ++|.++...||.++|+.|| -..|+|+-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999 567889887 489999999999999999764
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0033 Score=43.12 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCC-eEEEEEe
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYN-RTLRFAL 85 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g-~~l~v~~ 85 (189)
+.+-|.|-+.|+.. ...+...|++||.|.+.... ....+-.|.|.++.+|++||. .||. .|+| --|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~-ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGR-IFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTC-EETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCe-EecCCEEEEEEE
Confidence 35678888999875 56778899999999988762 234699999999999999999 6998 7775 4555655
Q ss_pred c
Q 029736 86 S 86 (189)
Q Consensus 86 ~ 86 (189)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.0033 Score=41.57 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCC--cceEEEEEeCCHHHHHHHHHHcCCceeeCCe----EE
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDK--PKGFAFVEYESEEIADYAIKLFSGIVTLYNR----TL 81 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~--~kg~afV~f~~~~~a~~al~~l~g~~~~~g~----~l 81 (189)
.-+|.|..||+.+||+++.+.+...-.+.....+..+.+.+ .-.-|+|.|.+.++...-.+.++|.+.++.+ +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999888877654443333332222221 2256899999999999999999998444443 45
Q ss_pred EEEecC
Q 029736 82 RFALSG 87 (189)
Q Consensus 82 ~v~~~~ 87 (189)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.16 E-value=0.003 Score=53.33 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKL 69 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~ 69 (189)
.++|+|. .+..+++.+|.++|++||.|.++.+..++ .-|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3789997 79999999999999999999999887653 26999999999999877653
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.64 E-value=0.034 Score=38.65 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEecCC--------CCC-----CcceEEEEEeCCHHHHHHHHHHcCCc
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVD-LYIPRDK--------ETD-----KPKGFAFVEYESEEIADYAIKLFSGI 73 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~-~~~~~~~--------~~~-----~~kg~afV~f~~~~~a~~al~~l~g~ 73 (189)
..-|.|-+.|+... ..+-+.|++||.|.+ ....++. ... ....+-.|+|.++.+|++||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 55677888876655 556778999999876 2221100 000 124678999999999999999 7998
Q ss_pred eeeCCeEEEEEecC
Q 029736 74 VTLYNRTLRFALSG 87 (189)
Q Consensus 74 ~~~~g~~l~v~~~~ 87 (189)
.|+|.-|-|....
T Consensus 85 -ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 -VFNGVLLGVIPYT 97 (132)
T ss_dssp -EETTEECEEEECC
T ss_pred -EeCcEEEEEEECC
Confidence 8999877776654
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.87 E-value=3.8e-05 Score=64.62 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCccccCCCcccccc-ccccCcccC
Q 029736 149 NGYETHLNVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 149 ~Gy~~~~~~~~~~~a-~~~~g~~~~ 172 (189)
+|||.|.+..++..| ..|+|..|+
T Consensus 146 ~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 146 YAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred eEEEeeccHHHHHHHHHHcCCCEEC
Confidence 799999999999999 788998887
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.70 E-value=0.29 Score=41.76 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 029736 8 GCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSG 72 (189)
Q Consensus 8 ~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g 72 (189)
...++|+ +|..+...+|.++|+.||. ..|+++.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3456665 8889999999999999994 57777766 4799999999999999998743
No 223
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=92.09 E-value=0.014 Score=40.64 Aligned_cols=104 Identities=9% Similarity=0.033 Sum_probs=36.4
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEEEecCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCC---CCCC
Q 029736 51 GFAFVEYESEEIADYAIKLFSGIVTLYNRTLRFALSGQDKNTQNSSMTTTPLSSRKSRSDPVPVPVNGMEISH---HSMR 127 (189)
Q Consensus 51 g~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~ 127 (189)
-+.|++|.+...+..|++.+++. ...|+.- +.+ ..| +........+.|.++|..- ++..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~-~~~g~~~-~~~-------------~~~---~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGG-QQMGRGS-MSY-------------GRP---PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp --------------------------------CCS-------------CCS---CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCC-CCCCCCC-CCc-------------CCC---CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 35678888888888888888776 4333321 000 000 0111122788999999721 1100
Q ss_pred -CCCCCCCCC---CCCCCCccccCCCCccccCCCcccccc-ccccCcccCC
Q 029736 128 -ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNYDYS-RRVFGATLDS 173 (189)
Q Consensus 128 -~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~~ 173 (189)
+.....+.. ......+ ....++||.|.+.++++.| ..++|..|+.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g-~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTK-ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSS-SCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred HHHhcCCEEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 011111110 0100001 1123799999999999999 7899999884
No 224
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=86.96 E-value=0.012 Score=42.37 Aligned_cols=116 Identities=9% Similarity=-0.009 Sum_probs=34.6
Q ss_pred EEeCCHHHHHHHHHHcCCceeeC--CeEEEEEecCCCCCCCCCCC---CcC-CCCCCCCCCCCCcccCCCCCCC---CCC
Q 029736 55 VEYESEEIADYAIKLFSGIVTLY--NRTLRFALSGQDKNTQNSSM---TTT-PLSSRKSRSDPVPVPVNGMEIS---HHS 125 (189)
Q Consensus 55 V~f~~~~~a~~al~~l~g~~~~~--g~~l~v~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~p~~---~~~ 125 (189)
.+|.+.++|+.++..|++. ... |+.++...+........... ... ..+.+........++|.++|.. +++
T Consensus 11 ee~e~~~d~e~~~~~~~~~-~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEK-AKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccc-cccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 6889999999999988886 544 55555544322111000000 000 0111111122267899999972 111
Q ss_pred CC-CCCCCCCCC---CCCCCCccccCCCCccccCCCcccccc-ccccCcccC
Q 029736 126 MR-ISGTRHYSS---EEPPPPGVTHESNGYETHLNVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 126 ~~-~~~~~~~~~---~~~~~~~~~~~~~Gy~~~~~~~~~~~a-~~~~g~~~~ 172 (189)
.. +.....+.. ......+ ....+|||.|.+...+..| ..|+|..|.
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTG-FSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTS-SEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHHhhcCCCEEEEEEEecCCCC-cEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 10 001111100 0000000 0123789999999999999 778988887
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=74.93 E-value=10 Score=22.93 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=40.8
Q ss_pred eEEEcC-CCCCCcHHHHHHHHhcCC-----CeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHcCCceeeCCeEEEE
Q 029736 10 NVYIGN-LDEKVSERVLYDILIQAG-----RVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLFSGIVTLYNRTLRF 83 (189)
Q Consensus 10 ~l~V~n-L~~~~~e~~L~~~F~~~G-----~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l~g~~~~~g~~l~v 83 (189)
++|+.. --..+...+|..++..-+ .|-.+.+.. .|.||+... +.+..+++.|++. .+.|+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~-~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNT-TVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTC-CC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccc-cCcCceEEE
Confidence 455542 124566777877777554 344566532 488988875 4577888889887 899999988
Q ss_pred EecC
Q 029736 84 ALSG 87 (189)
Q Consensus 84 ~~~~ 87 (189)
+.++
T Consensus 72 ~~~~ 75 (76)
T 2g0c_A 72 NKAN 75 (76)
T ss_dssp EECC
T ss_pred EECC
Confidence 7653
No 226
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.22 E-value=2.6 Score=27.46 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=23.3
Q ss_pred CCCccccCCCcccccc-ccccCcccC
Q 029736 148 SNGYETHLNVTNYDYS-RRVFGATLD 172 (189)
Q Consensus 148 ~~Gy~~~~~~~~~~~a-~~~~g~~~~ 172 (189)
-.|||.|.+.+++..| +.|+|.+|.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 5899999999999999 889999998
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.13 E-value=1.2e+02 Score=21.80 Aligned_cols=57 Identities=16% Similarity=-0.038 Sum_probs=36.6
Q ss_pred CeEEEcCCCC-C--------CcHHHHHHHH--hcCCCeEEEEEecCCCCCCcceEEEEEeCC-HHHHHHHHH
Q 029736 9 CNVYIGNLDE-K--------VSERVLYDIL--IQAGRVVDLYIPRDKETDKPKGFAFVEYES-EEIADYAIK 68 (189)
Q Consensus 9 ~~l~V~nL~~-~--------~~e~~L~~~F--~~~G~i~~~~~~~~~~~~~~kg~afV~f~~-~~~a~~al~ 68 (189)
.+++|-|++. . ....+|++.| ..|..+.- +.+.++ .-+.|++.|.|.+ ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3566778876 2 3347889977 88987664 444432 2467999999984 444455544
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.40 E-value=7.4 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeC
Q 029736 23 RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYE 58 (189)
Q Consensus 23 ~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~ 58 (189)
+|+.++|...|.|+.. . ..|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N-----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E-----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E-----CCCCeeEEeeC
Confidence 4555666666665433 2 24699999865
No 229
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=30.17 E-value=85 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=28.4
Q ss_pred CcHHHHHHHHhcCCCeE---EEEEecCCCCCCcceEEEEE
Q 029736 20 VSERVLYDILIQAGRVV---DLYIPRDKETDKPKGFAFVE 56 (189)
Q Consensus 20 ~~e~~L~~~F~~~G~i~---~~~~~~~~~~~~~kg~afV~ 56 (189)
.++++|+++-.+.|++. .++|..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999774 35666664488888888653
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.73 E-value=1.2e+02 Score=19.30 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 029736 7 SGCNVYIGNLDEKVSERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIADYAIKLF 70 (189)
Q Consensus 7 ~~~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~~~~~~~~~~kg~afV~f~~~~~a~~al~~l 70 (189)
+.+-|-+-|+|..+-..++.-...-.|---.|..+- |.|.+.|.+.++...|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 367777889999999998887777788666676643 67999999999999998765
No 231
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.70 E-value=52 Score=15.46 Aligned_cols=12 Identities=25% Similarity=0.348 Sum_probs=10.4
Q ss_pred cHHHHHHHHhcC
Q 029736 21 SERVLYDILIQA 32 (189)
Q Consensus 21 ~e~~L~~~F~~~ 32 (189)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 688999998887
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.28 E-value=83 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=24.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEE
Q 029736 9 CNVYIGNLDEKVSERVLYDILIQAGRVVDLYI 40 (189)
Q Consensus 9 ~~l~V~nL~~~~~e~~L~~~F~~~G~i~~~~~ 40 (189)
.-+.|+|||..++...|..++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999999999987 65655444
No 233
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.41 E-value=1.8e+02 Score=18.73 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHhc-CCC---eEEE-EEecCCCCCCcceEEEEEeCCHHHHHHH
Q 029736 18 EKVSERVLYDILIQ-AGR---VVDL-YIPRDKETDKPKGFAFVEYESEEIADYA 66 (189)
Q Consensus 18 ~~~~e~~L~~~F~~-~G~---i~~~-~~~~~~~~~~~kg~afV~f~~~~~a~~a 66 (189)
...+..+|++-+.+ |+. +..| .+...-..|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45667788777765 552 2233 23333334567777765 6776666554
Done!