Query 029737
Match_columns 189
No_of_seqs 231 out of 1908
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 3E-22 6.4E-27 148.0 15.7 82 20-101 32-114 (144)
2 KOG0149 Predicted RNA-binding 99.8 3.3E-20 7.2E-25 143.1 10.5 86 15-100 5-90 (247)
3 TIGR01659 sex-lethal sex-letha 99.8 5.7E-19 1.2E-23 147.4 16.2 82 20-101 191-275 (346)
4 KOG0121 Nuclear cap-binding pr 99.8 6.4E-19 1.4E-23 124.4 8.2 79 20-98 34-113 (153)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.5E-18 1.6E-22 140.9 12.8 83 19-101 266-349 (352)
6 TIGR01659 sex-lethal sex-letha 99.8 7.6E-18 1.6E-22 140.7 12.1 84 17-100 102-186 (346)
7 KOG0113 U1 small nuclear ribon 99.7 2.5E-17 5.5E-22 131.0 11.2 100 19-118 98-198 (335)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-17 5.1E-22 137.9 11.0 81 21-101 2-83 (352)
9 KOG0105 Alternative splicing f 99.7 7.2E-17 1.6E-21 120.8 11.1 76 20-98 4-80 (241)
10 PF00076 RRM_1: RNA recognitio 99.7 8E-17 1.7E-21 103.8 8.9 69 25-94 1-70 (70)
11 KOG0107 Alternative splicing f 99.7 4.1E-16 8.8E-21 115.7 11.3 78 21-103 9-87 (195)
12 PLN03120 nucleic acid binding 99.7 2.4E-16 5.3E-21 125.1 10.8 75 22-99 4-78 (260)
13 KOG0122 Translation initiation 99.7 2.1E-16 4.6E-21 122.7 10.2 84 18-101 185-269 (270)
14 KOG4207 Predicted splicing fac 99.7 5.9E-16 1.3E-20 117.7 9.9 88 16-103 7-95 (256)
15 PF14259 RRM_6: RNA recognitio 99.7 6.6E-16 1.4E-20 100.0 8.7 69 25-94 1-70 (70)
16 KOG0148 Apoptosis-promoting RN 99.6 3.9E-15 8.5E-20 117.2 13.3 78 19-102 161-239 (321)
17 TIGR01645 half-pint poly-U bin 99.6 1.8E-15 4E-20 133.4 12.5 82 20-101 202-284 (612)
18 KOG0125 Ataxin 2-binding prote 99.6 8E-16 1.7E-20 123.9 9.2 89 18-108 92-181 (376)
19 TIGR01648 hnRNP-R-Q heterogene 99.6 1E-14 2.2E-19 128.4 15.8 75 21-103 232-309 (578)
20 TIGR01645 half-pint poly-U bin 99.6 1.5E-15 3.2E-20 134.0 10.0 79 20-98 105-184 (612)
21 TIGR01622 SF-CC1 splicing fact 99.6 2.8E-15 6.1E-20 129.6 11.3 82 19-100 86-167 (457)
22 PLN03121 nucleic acid binding 99.6 4.5E-15 9.8E-20 116.3 10.3 76 21-99 4-79 (243)
23 TIGR01628 PABP-1234 polyadenyl 99.6 4.4E-15 9.6E-20 131.6 11.4 76 24-99 2-78 (562)
24 KOG0111 Cyclophilin-type pepti 99.6 7.3E-16 1.6E-20 118.3 5.2 84 18-101 6-90 (298)
25 PLN03213 repressor of silencin 99.6 6.6E-15 1.4E-19 124.3 9.7 78 20-101 8-88 (759)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.2E-14 4.8E-19 125.5 12.9 82 20-101 293-375 (509)
27 KOG0116 RasGAP SH3 binding pro 99.6 4.1E-14 9E-19 119.8 13.7 85 20-104 286-370 (419)
28 KOG0117 Heterogeneous nuclear 99.6 2.4E-14 5.2E-19 119.5 11.6 80 21-108 258-338 (506)
29 TIGR01628 PABP-1234 polyadenyl 99.6 1.2E-14 2.6E-19 128.9 10.3 82 19-101 282-364 (562)
30 TIGR01648 hnRNP-R-Q heterogene 99.6 1.4E-14 3E-19 127.5 10.5 75 20-95 56-132 (578)
31 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-14 4E-19 124.6 11.0 78 22-99 186-264 (457)
32 KOG0126 Predicted RNA-binding 99.6 4.5E-16 9.8E-21 116.1 0.4 79 20-98 33-112 (219)
33 smart00362 RRM_2 RNA recogniti 99.6 4.3E-14 9.2E-19 90.2 9.4 71 24-96 1-72 (72)
34 KOG0148 Apoptosis-promoting RN 99.5 2.7E-14 5.9E-19 112.5 8.7 89 15-103 55-144 (321)
35 smart00360 RRM RNA recognition 99.5 7.3E-14 1.6E-18 88.8 8.8 70 27-96 1-71 (71)
36 KOG0130 RNA-binding protein RB 99.5 3.1E-14 6.6E-19 101.7 7.3 82 21-102 71-153 (170)
37 KOG0144 RNA-binding protein CU 99.5 1.2E-14 2.6E-19 120.8 5.4 85 20-105 122-210 (510)
38 COG0724 RNA-binding proteins ( 99.5 8.6E-14 1.9E-18 110.3 10.2 78 22-99 115-193 (306)
39 KOG0117 Heterogeneous nuclear 99.5 9.5E-14 2.1E-18 115.9 10.4 80 20-99 81-162 (506)
40 KOG0108 mRNA cleavage and poly 99.5 4.7E-14 1E-18 120.1 8.0 82 23-104 19-101 (435)
41 KOG0131 Splicing factor 3b, su 99.5 4.5E-14 9.9E-19 105.5 6.3 81 19-99 6-87 (203)
42 KOG0144 RNA-binding protein CU 99.5 7.9E-14 1.7E-18 116.0 8.3 83 19-101 31-117 (510)
43 cd00590 RRM RRM (RNA recogniti 99.5 5.7E-13 1.2E-17 85.4 10.0 73 24-97 1-74 (74)
44 KOG0145 RNA-binding protein EL 99.5 1.6E-13 3.4E-18 107.9 8.4 84 19-102 38-122 (360)
45 KOG0127 Nucleolar protein fibr 99.5 2.7E-13 5.9E-18 115.7 9.0 83 19-101 289-378 (678)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.2E-13 9E-18 117.1 10.3 75 21-101 1-78 (481)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9E-13 2E-17 115.0 11.8 78 19-101 272-351 (481)
48 KOG4212 RNA-binding protein hn 99.4 1.5E-12 3.2E-17 108.7 11.0 81 20-101 42-124 (608)
49 KOG0114 Predicted RNA-binding 99.4 2.4E-12 5.2E-17 88.0 8.6 79 19-100 15-94 (124)
50 KOG4205 RNA-binding protein mu 99.4 4.2E-13 9.1E-18 110.0 5.8 84 21-104 5-88 (311)
51 KOG0127 Nucleolar protein fibr 99.4 1.8E-12 4E-17 110.7 8.7 81 22-103 117-198 (678)
52 KOG4205 RNA-binding protein mu 99.4 4.2E-12 9.1E-17 104.1 10.1 87 21-107 96-182 (311)
53 KOG0109 RNA-binding protein LA 99.3 1.3E-12 2.8E-17 104.1 5.9 71 23-101 3-74 (346)
54 KOG0147 Transcriptional coacti 99.3 1.6E-12 3.5E-17 111.0 6.5 86 19-104 275-361 (549)
55 KOG0153 Predicted RNA-binding 99.3 4.8E-12 1E-16 102.9 8.5 83 12-100 218-302 (377)
56 smart00361 RRM_1 RNA recogniti 99.3 7.8E-12 1.7E-16 81.1 8.0 60 36-95 2-69 (70)
57 KOG0124 Polypyrimidine tract-b 99.3 9.4E-13 2E-17 107.8 4.3 77 21-97 112-189 (544)
58 KOG0146 RNA-binding protein ET 99.3 3.3E-12 7.2E-17 100.8 5.7 87 16-102 279-366 (371)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2E-11 4.3E-16 107.0 9.9 77 16-98 169-257 (509)
60 KOG0415 Predicted peptidyl pro 99.3 8E-12 1.7E-16 102.0 6.5 80 21-100 238-318 (479)
61 PF13893 RRM_5: RNA recognitio 99.3 3.7E-11 7.9E-16 74.4 8.0 55 39-98 1-56 (56)
62 KOG0123 Polyadenylate-binding 99.2 3.1E-11 6.8E-16 101.7 8.9 83 22-107 76-159 (369)
63 KOG0131 Splicing factor 3b, su 99.2 2E-11 4.4E-16 91.3 6.3 80 21-100 95-176 (203)
64 KOG0145 RNA-binding protein EL 99.2 1.3E-10 2.8E-15 91.7 10.6 86 15-100 271-357 (360)
65 KOG0109 RNA-binding protein LA 99.2 2.7E-11 5.9E-16 96.6 6.4 80 19-106 75-155 (346)
66 KOG0146 RNA-binding protein ET 99.1 7.1E-11 1.5E-15 93.4 6.0 83 21-104 18-104 (371)
67 KOG0124 Polypyrimidine tract-b 99.1 1.3E-10 2.8E-15 95.5 7.1 82 18-99 206-288 (544)
68 KOG4208 Nucleolar RNA-binding 99.1 4.1E-10 9E-15 85.9 8.5 85 17-101 44-130 (214)
69 KOG4212 RNA-binding protein hn 99.1 3.2E-10 6.9E-15 95.0 7.1 75 19-98 533-608 (608)
70 KOG0132 RNA polymerase II C-te 99.1 3.6E-10 7.9E-15 100.1 7.8 72 22-99 421-493 (894)
71 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.8E-10 1E-14 96.7 7.9 81 21-101 404-485 (940)
72 KOG4209 Splicing factor RNPS1, 99.1 4.2E-10 9.1E-15 89.1 6.9 85 17-101 96-180 (231)
73 KOG0110 RNA-binding protein (R 99.1 2.1E-10 4.5E-15 100.8 5.5 84 18-101 609-693 (725)
74 KOG0533 RRM motif-containing p 99.0 1.3E-09 2.8E-14 86.4 9.2 84 18-102 79-163 (243)
75 KOG4206 Spliceosomal protein s 99.0 2.6E-09 5.6E-14 82.7 9.0 83 18-103 5-92 (221)
76 KOG4211 Splicing factor hnRNP- 99.0 3E-09 6.5E-14 90.3 9.1 78 19-99 7-84 (510)
77 KOG0110 RNA-binding protein (R 98.9 2.9E-09 6.2E-14 93.7 8.2 77 23-99 516-596 (725)
78 KOG0123 Polyadenylate-binding 98.9 3.7E-09 7.9E-14 89.3 8.1 71 23-99 2-73 (369)
79 KOG0106 Alternative splicing f 98.9 2.9E-09 6.3E-14 82.8 5.6 69 23-99 2-71 (216)
80 KOG1995 Conserved Zn-finger pr 98.8 2.4E-08 5.2E-13 82.0 9.3 84 19-102 63-155 (351)
81 KOG1548 Transcription elongati 98.8 2.3E-08 5E-13 81.7 8.8 83 18-101 130-221 (382)
82 KOG4454 RNA binding protein (R 98.8 2E-09 4.4E-14 82.9 2.5 77 21-99 8-85 (267)
83 KOG1457 RNA binding protein (c 98.8 5.1E-08 1.1E-12 75.6 9.6 88 19-106 31-123 (284)
84 KOG0226 RNA-binding proteins [ 98.8 6.5E-09 1.4E-13 81.7 4.2 84 18-101 186-270 (290)
85 PF04059 RRM_2: RNA recognitio 98.7 1.3E-07 2.9E-12 64.9 9.3 79 23-101 2-87 (97)
86 KOG4211 Splicing factor hnRNP- 98.7 1.1E-07 2.4E-12 80.9 8.4 79 20-99 101-180 (510)
87 KOG4660 Protein Mei2, essentia 98.6 4.8E-08 1.1E-12 84.1 4.3 72 18-94 71-143 (549)
88 KOG4849 mRNA cleavage factor I 98.6 4.4E-07 9.6E-12 74.5 9.6 75 21-95 79-156 (498)
89 KOG0147 Transcriptional coacti 98.6 2.6E-08 5.7E-13 85.6 2.2 90 14-103 171-260 (549)
90 KOG0151 Predicted splicing reg 98.4 7.7E-07 1.7E-11 78.8 6.4 82 19-100 171-256 (877)
91 KOG4210 Nuclear localization s 98.4 4.8E-07 1E-11 74.0 4.6 81 20-100 182-263 (285)
92 KOG0120 Splicing factor U2AF, 98.3 1E-06 2.2E-11 76.3 5.4 87 18-104 285-372 (500)
93 PF08777 RRM_3: RNA binding mo 98.3 3.7E-06 8E-11 58.8 6.5 70 23-98 2-77 (105)
94 PF11608 Limkain-b1: Limkain b 98.2 1.5E-05 3.2E-10 52.8 7.7 69 23-101 3-77 (90)
95 KOG1190 Polypyrimidine tract-b 98.1 2.1E-05 4.5E-10 66.0 9.4 74 22-100 297-372 (492)
96 KOG1457 RNA binding protein (c 98.0 6.5E-06 1.4E-10 64.0 4.5 66 18-87 206-272 (284)
97 KOG0106 Alternative splicing f 98.0 5.7E-06 1.2E-10 64.5 3.4 72 19-98 96-168 (216)
98 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.7E-05 5.9E-10 47.5 5.5 52 23-81 2-53 (53)
99 KOG0129 Predicted RNA-binding 97.9 5.1E-05 1.1E-09 65.4 7.7 64 20-83 368-432 (520)
100 KOG0129 Predicted RNA-binding 97.9 5.1E-05 1.1E-09 65.4 7.4 63 20-83 257-325 (520)
101 KOG4307 RNA binding protein RB 97.8 6.2E-05 1.4E-09 67.0 7.7 75 23-97 868-943 (944)
102 KOG1365 RNA-binding protein Fu 97.8 4.2E-05 9.1E-10 63.8 5.2 77 22-99 280-360 (508)
103 KOG1855 Predicted RNA-binding 97.8 3.7E-05 8.1E-10 64.8 4.8 67 18-84 227-306 (484)
104 KOG1365 RNA-binding protein Fu 97.7 3E-05 6.6E-10 64.6 3.5 74 24-98 163-240 (508)
105 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00024 5.2E-09 49.1 7.4 77 21-98 5-89 (100)
106 KOG4206 Spliceosomal protein s 97.6 0.00025 5.5E-09 55.2 7.4 75 19-98 143-219 (221)
107 COG5175 MOT2 Transcriptional r 97.6 0.00018 3.9E-09 59.3 6.7 79 22-100 114-202 (480)
108 KOG0128 RNA-binding protein SA 97.5 7.7E-05 1.7E-09 67.6 3.5 82 22-104 736-818 (881)
109 KOG0105 Alternative splicing f 97.5 0.0015 3.3E-08 49.7 9.8 75 16-97 109-186 (241)
110 KOG1190 Polypyrimidine tract-b 97.4 0.00074 1.6E-08 56.9 7.1 77 20-100 412-490 (492)
111 KOG2314 Translation initiation 97.3 0.0013 2.7E-08 57.6 8.4 78 20-98 56-141 (698)
112 PF08952 DUF1866: Domain of un 97.3 0.0011 2.5E-08 48.6 6.9 56 38-101 52-107 (146)
113 KOG1456 Heterogeneous nuclear 97.2 0.00093 2E-08 55.8 6.4 83 12-100 21-106 (494)
114 KOG0128 RNA-binding protein SA 97.2 1.5E-05 3.2E-10 72.1 -4.6 70 21-90 666-735 (881)
115 KOG3152 TBP-binding protein, a 97.2 0.00035 7.6E-09 55.4 3.5 71 21-91 73-156 (278)
116 PF08675 RNA_bind: RNA binding 97.1 0.0029 6.3E-08 42.0 6.6 54 21-83 8-61 (87)
117 KOG0120 Splicing factor U2AF, 97.1 0.0018 3.9E-08 56.5 7.2 58 41-98 428-489 (500)
118 KOG1456 Heterogeneous nuclear 97.0 0.0066 1.4E-07 50.9 9.5 79 16-99 281-361 (494)
119 PF10309 DUF2414: Protein of u 97.0 0.0074 1.6E-07 37.9 7.2 54 21-82 4-60 (62)
120 KOG4676 Splicing factor, argin 96.7 0.0025 5.3E-08 53.6 4.8 77 22-98 7-86 (479)
121 KOG1548 Transcription elongati 96.7 0.0082 1.8E-07 49.8 7.6 76 21-100 264-351 (382)
122 KOG4307 RNA binding protein RB 96.4 0.0035 7.7E-08 56.2 4.1 77 20-97 432-510 (944)
123 KOG2202 U2 snRNP splicing fact 96.3 0.0023 5.1E-08 50.9 2.0 54 45-99 92-146 (260)
124 KOG4285 Mitotic phosphoprotein 96.3 0.024 5.2E-07 46.3 7.8 69 22-97 197-266 (350)
125 KOG1996 mRNA splicing factor [ 96.1 0.023 5E-07 46.3 6.9 62 36-97 300-363 (378)
126 KOG2193 IGF-II mRNA-binding pr 96.1 0.0041 8.9E-08 52.9 2.4 74 23-102 2-77 (584)
127 PF15023 DUF4523: Protein of u 96.0 0.058 1.3E-06 39.5 7.9 75 17-98 81-159 (166)
128 KOG0115 RNA-binding protein p5 95.9 0.009 1.9E-07 47.6 3.7 60 23-83 32-91 (275)
129 KOG0112 Large RNA-binding prot 95.7 0.0034 7.4E-08 57.6 0.7 79 19-98 369-448 (975)
130 KOG2135 Proteins containing th 95.7 0.0079 1.7E-07 51.7 2.7 72 24-101 374-446 (526)
131 KOG0112 Large RNA-binding prot 95.6 0.017 3.6E-07 53.3 4.6 78 18-101 451-531 (975)
132 KOG2416 Acinus (induces apopto 95.1 0.026 5.6E-07 50.0 4.0 75 19-99 441-520 (718)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.02 4.3E-07 43.7 2.9 79 20-98 5-95 (176)
134 KOG2253 U1 snRNP complex, subu 94.7 0.031 6.7E-07 50.0 3.3 70 20-98 38-108 (668)
135 KOG2591 c-Mpl binding protein, 94.2 0.1 2.2E-06 46.1 5.4 73 21-100 174-251 (684)
136 KOG2068 MOT2 transcription fac 94.1 0.018 4E-07 47.5 0.8 78 23-100 78-162 (327)
137 KOG4210 Nuclear localization s 94.1 0.036 7.9E-07 45.5 2.4 78 21-98 87-165 (285)
138 PF07576 BRAP2: BRCA1-associat 93.7 1.1 2.5E-05 31.4 9.1 64 24-89 15-80 (110)
139 KOG4660 Protein Mei2, essentia 93.7 0.15 3.3E-06 44.8 5.5 78 24-101 390-473 (549)
140 PF03880 DbpA: DbpA RNA bindin 92.8 1.1 2.3E-05 28.9 7.3 59 31-98 10-74 (74)
141 PF04847 Calcipressin: Calcipr 91.5 0.81 1.7E-05 35.2 6.4 59 35-99 8-69 (184)
142 PRK11634 ATP-dependent RNA hel 90.2 10 0.00023 34.6 13.3 69 22-99 486-561 (629)
143 smart00596 PRE_C2HC PRE_C2HC d 87.2 1.3 2.9E-05 28.3 3.9 60 37-98 2-62 (69)
144 PF11767 SET_assoc: Histone ly 86.6 5.3 0.00011 25.3 6.5 53 33-94 11-64 (66)
145 KOG4574 RNA-binding protein (c 86.1 0.73 1.6E-05 42.8 3.2 79 23-107 299-380 (1007)
146 KOG0804 Cytoplasmic Zn-finger 84.7 5.4 0.00012 34.7 7.5 67 21-89 73-141 (493)
147 KOG4676 Splicing factor, argin 84.6 0.079 1.7E-06 44.8 -3.3 63 23-89 152-214 (479)
148 KOG2193 IGF-II mRNA-binding pr 84.1 0.14 3.1E-06 43.8 -2.0 75 21-99 79-155 (584)
149 KOG4483 Uncharacterized conser 83.6 4.4 9.5E-05 34.8 6.5 59 18-83 387-446 (528)
150 KOG4410 5-formyltetrahydrofola 82.3 2.6 5.7E-05 34.5 4.5 47 22-74 330-377 (396)
151 PF15513 DUF4651: Domain of un 81.8 4.1 8.9E-05 25.5 4.3 18 37-54 9-26 (62)
152 KOG4454 RNA binding protein (R 81.1 0.33 7.1E-06 38.2 -0.9 67 16-83 74-144 (267)
153 PF07530 PRE_C2HC: Associated 79.6 4.6 9.9E-05 25.7 4.1 60 37-98 2-62 (68)
154 PF03468 XS: XS domain; Inter 77.5 7.1 0.00015 27.6 5.1 47 34-83 29-76 (116)
155 PF10567 Nab6_mRNP_bdg: RNA-re 73.6 7.5 0.00016 32.0 4.8 84 19-102 12-109 (309)
156 KOG2318 Uncharacterized conser 72.9 18 0.0004 32.6 7.3 84 19-102 171-309 (650)
157 PF07292 NID: Nmi/IFP 35 domai 62.8 10 0.00022 25.5 3.0 32 67-98 1-34 (88)
158 PRK14548 50S ribosomal protein 61.6 41 0.00089 22.3 5.7 55 25-82 23-79 (84)
159 TIGR03636 L23_arch archaeal ri 61.0 40 0.00086 22.0 5.5 55 24-81 15-71 (77)
160 PF15063 TC1: Thyroid cancer p 58.4 7.4 0.00016 25.3 1.6 35 15-49 18-52 (79)
161 KOG2891 Surface glycoprotein [ 56.0 14 0.00031 30.3 3.3 35 22-56 149-195 (445)
162 KOG4019 Calcineurin-mediated s 55.2 15 0.00031 28.2 3.0 74 21-100 9-89 (193)
163 COG0724 RNA-binding proteins ( 55.2 18 0.00038 27.8 3.7 54 18-71 221-274 (306)
164 KOG4008 rRNA processing protei 50.1 16 0.00035 29.2 2.6 35 18-52 36-70 (261)
165 COG5353 Uncharacterized protei 49.0 1.1E+02 0.0024 22.8 6.7 55 23-77 88-155 (161)
166 KOG0156 Cytochrome P450 CYP2 s 45.8 43 0.00093 29.7 5.0 60 24-92 34-96 (489)
167 PRK01178 rps24e 30S ribosomal 44.0 80 0.0017 21.7 5.1 46 33-79 30-80 (99)
168 KOG3424 40S ribosomal protein 42.6 1.1E+02 0.0024 21.8 5.6 47 32-79 33-84 (132)
169 PF11411 DNA_ligase_IV: DNA li 42.5 20 0.00044 19.8 1.5 16 32-47 19-34 (36)
170 PHA01632 hypothetical protein 42.0 30 0.00066 21.1 2.4 19 27-45 21-39 (64)
171 KOG4213 RNA-binding protein La 41.4 43 0.00093 25.7 3.6 57 23-84 112-170 (205)
172 COG5193 LHP1 La protein, small 41.0 12 0.00025 32.2 0.7 61 22-82 174-244 (438)
173 PF04026 SpoVG: SpoVG; InterP 40.0 63 0.0014 21.4 3.9 26 48-73 2-27 (84)
174 cd04908 ACT_Bt0572_1 N-termina 40.0 86 0.0019 19.0 8.5 49 35-87 14-63 (66)
175 PF02714 DUF221: Domain of unk 39.7 38 0.00083 27.8 3.6 32 67-100 1-33 (325)
176 PF08734 GYD: GYD domain; Int 37.3 1.2E+02 0.0027 20.1 6.0 42 36-81 22-64 (91)
177 COG3254 Uncharacterized conser 36.9 1.4E+02 0.0031 20.7 5.4 43 37-82 27-69 (105)
178 PF09702 Cas_Csa5: CRISPR-asso 36.3 47 0.001 23.0 2.9 23 19-44 61-83 (105)
179 PF14893 PNMA: PNMA 34.8 29 0.00064 29.2 2.1 26 20-45 16-41 (331)
180 PRK13259 regulatory protein Sp 34.5 79 0.0017 21.5 3.8 26 48-73 2-27 (94)
181 PF05189 RTC_insert: RNA 3'-te 34.4 88 0.0019 21.2 4.2 47 24-72 12-65 (103)
182 PF13046 DUF3906: Protein of u 33.6 56 0.0012 20.5 2.7 34 34-69 30-63 (64)
183 PF10281 Ish1: Putative stress 32.6 47 0.001 18.2 2.1 17 33-49 3-19 (38)
184 PF09707 Cas_Cas2CT1978: CRISP 32.6 1.3E+02 0.0028 20.1 4.5 47 22-71 25-71 (86)
185 PTZ00071 40S ribosomal protein 32.4 1.3E+02 0.0028 21.8 4.8 46 33-79 35-86 (132)
186 PF15407 Spo7_2_N: Sporulation 32.1 18 0.00038 23.0 0.3 26 20-45 25-50 (67)
187 KOG1295 Nonsense-mediated deca 31.1 58 0.0013 27.8 3.3 67 21-87 6-76 (376)
188 CHL00030 rpl23 ribosomal prote 30.5 1.7E+02 0.0038 19.7 5.4 34 24-57 20-55 (93)
189 PF14026 DUF4242: Protein of u 29.4 1.6E+02 0.0035 19.0 8.5 60 25-86 3-69 (77)
190 PTZ00191 60S ribosomal protein 29.2 2.2E+02 0.0049 21.0 5.7 53 24-79 83-137 (145)
191 KOG0226 RNA-binding proteins [ 27.7 25 0.00055 28.5 0.6 74 21-95 95-172 (290)
192 PF03439 Spt5-NGN: Early trans 27.0 1.3E+02 0.0029 19.6 3.9 21 63-83 43-63 (84)
193 KOG2295 C2H2 Zn-finger protein 27.0 9.3 0.0002 34.2 -2.2 67 20-86 229-296 (648)
194 KOG3973 Uncharacterized conser 27.0 1.3E+02 0.0029 25.6 4.6 9 23-31 295-303 (465)
195 KOG4365 Uncharacterized conser 26.6 9.9 0.00021 33.1 -2.0 76 23-99 4-80 (572)
196 PF08206 OB_RNB: Ribonuclease 26.5 15 0.00033 22.3 -0.7 37 63-99 7-44 (58)
197 COG0030 KsgA Dimethyladenosine 26.3 72 0.0016 25.9 3.0 31 22-52 95-125 (259)
198 KOG3432 Vacuolar H+-ATPase V1 25.6 1.3E+02 0.0029 21.1 3.7 25 31-55 42-66 (121)
199 PF12287 Caprin-1_C: Cytoplasm 25.2 1.8E+02 0.0038 24.3 4.9 27 128-154 263-293 (316)
200 KOG0116 RasGAP SH3 binding pro 24.7 1E+02 0.0023 26.8 3.8 7 75-81 303-309 (419)
201 COG2004 RPS24A Ribosomal prote 23.5 2.6E+02 0.0057 19.5 5.2 47 32-79 30-81 (107)
202 cd00027 BRCT Breast Cancer Sup 23.2 1.4E+02 0.003 17.2 3.3 26 23-48 2-27 (72)
203 PHA01782 hypothetical protein 22.9 1.1E+02 0.0023 23.1 3.1 54 27-84 60-113 (177)
204 smart00457 MACPF membrane-atta 22.9 76 0.0017 24.1 2.4 27 28-54 31-59 (194)
205 COG2088 SpoVG Uncharacterized 22.7 1.3E+02 0.0029 20.2 3.1 27 48-74 2-28 (95)
206 PF00398 RrnaAD: Ribosomal RNA 21.6 1.2E+02 0.0025 24.3 3.4 23 22-44 97-119 (262)
207 PF01823 MACPF: MAC/Perforin d 21.2 71 0.0015 24.1 2.0 22 27-48 53-77 (212)
208 PF07876 Dabb: Stress responsi 21.1 2.4E+02 0.0053 18.2 6.2 57 25-81 4-71 (97)
209 PF05336 DUF718: Domain of unk 21.0 2.8E+02 0.0062 18.9 5.1 43 37-82 26-68 (106)
210 PF08156 NOP5NT: NOP5NT (NUC12 20.4 66 0.0014 20.2 1.3 17 66-82 46-62 (67)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.90 E-value=3e-22 Score=148.00 Aligned_cols=82 Identities=38% Similarity=0.687 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++||++|+++|++||.|++|.|+.++.|++++|||||+|++.++|++||+ +++..|+++.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999999999999999999999999999996 6899999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 543
No 2
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=3.3e-20 Score=143.13 Aligned_cols=86 Identities=77% Similarity=1.299 Sum_probs=82.1
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
....|++-+||||++|+|+++.|+|+++|++||+|++..|+.|+.|+++|||+||+|.|.++|.+|++.....|+||+..
T Consensus 5 ~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 5 NPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred CCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|+++..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 999977
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=5.7e-19 Score=147.43 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eeeEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRANCN 96 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g--~~i~v~ 96 (189)
...++|||+|||+++||++|+++|++||+|+.|+|++++.|++++|||||+|++.++|++||+ +++..|++ +.|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999997 58887766 678888
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 88544
No 4
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=6.4e-19 Score=124.37 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=75.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a 98 (189)
.++++|||+||++.++||+|.++|+++|+|+.|.+-.|+.+..++|||||+|.+.++|+.|++. ++..++.+.|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4678999999999999999999999999999999999999999999999999999999999985 999999999999987
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=7.5e-18 Score=140.92 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=77.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
+....+|||+|||+++++++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|.+||+ +++..|+|+.|+|.+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445589999999999999999999999999999999999999999999999999999999997 699999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+..+
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 8554
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=7.6e-18 Score=140.72 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=78.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+...++|||+|||+++||++|+++|++||.|++|+|++|+.|++++|||||+|.++++|++||+ +++.+|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345577899999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred EEccc
Q 029737 96 NLACL 100 (189)
Q Consensus 96 ~~a~~ 100 (189)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98754
No 7
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.5e-17 Score=130.97 Aligned_cols=100 Identities=29% Similarity=0.500 Sum_probs=87.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..+.++|||+.|+++++|.+|+..|++||.|+.|.|+.|+.||+++|||||+|+++.+...|.+ .++..|+++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3678999999999999999999999999999999999999999999999999999999999997 499999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCC
Q 029737 98 ACLGVQRSKPSTPKHGGGGGR 118 (189)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~gr 118 (189)
..-+..+.+-...-+++-+++
T Consensus 178 ERgRTvkgW~PRRLGGGLGg~ 198 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGGLGGR 198 (335)
T ss_pred cccccccccccccccCCcCCc
Confidence 877666665555555543433
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=2.4e-17 Score=137.91 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+.++|||+|||++++|++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35699999999999999999999999999999999999999999999999999999999996 69999999999999886
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 9
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=7.2e-17 Score=120.77 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||.++.|.+|+++|.+||.|.+|.|...+ ....||||+|++..+|+.||. .++..+++..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999885442 356799999999999999997 4999999999999998
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=8e-17 Score=103.76 Aligned_cols=69 Identities=36% Similarity=0.645 Sum_probs=64.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
|||+|||+++|+++|+++|++||.|..+.+..+ .++..+++|||+|++.++|++|++ +++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 578899999999999999999997 699999999775
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.1e-16 Score=115.69 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
-.++|||+||+..+++.||+..|.+||.|..|.|... +.|||||||++..+|++|+. +++..|+|..|.|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998765 47899999999999999996 69999999999999995
Q ss_pred cCCC
Q 029737 100 LGVQ 103 (189)
Q Consensus 100 ~~~~ 103 (189)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5443
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.69 E-value=2.4e-16 Score=125.06 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
.++|||+|||+.+||++|+++|+.||.|++|.|+.+++ .+|||||+|++.++|+.||.+++..|.++.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999998864 4789999999999999999999999999999999984
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.1e-16 Score=122.69 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=78.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
+-.+..+|-|.||+.+++|++|+++|.+||.|..|.|.+|++||.+||||||.|.++++|.+||+ +++.-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44577789999999999999999999999999999999999999999999999999999999996 69988999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99664
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=5.9e-16 Score=117.66 Aligned_cols=88 Identities=25% Similarity=0.425 Sum_probs=81.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
+++-..+.+|-|-||.+.++.++|+.+|++||.|-+|.|++|+.|..++|||||.|.+..+|++|++ +++..|+|++|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4455677899999999999999999999999999999999999999999999999999999999997 599999999999
Q ss_pred EEEcccCCC
Q 029737 95 CNLACLGVQ 103 (189)
Q Consensus 95 v~~a~~~~~ 103 (189)
|.+|+....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999975543
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=6.6e-16 Score=100.00 Aligned_cols=69 Identities=32% Similarity=0.600 Sum_probs=62.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeE
Q 029737 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRAN 94 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~ 94 (189)
|||+|||+++++++|+++|+.||.|..+.+..+++ +..+++|||+|.+.++|.+|++. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999986 66889999764
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.9e-15 Score=117.24 Aligned_cols=78 Identities=35% Similarity=0.524 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..+.++|||+|++.-+||++|++.|+.||.|.+|++.++ +||+||.|++.|+|..||. +|+.+|.|+.++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 446789999999999999999999999999999999887 5799999999999999996 699999999999999
Q ss_pred cccCC
Q 029737 98 ACLGV 102 (189)
Q Consensus 98 a~~~~ 102 (189)
-+...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 85543
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=1.8e-15 Score=133.41 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=76.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++++++|+++|++||.|++|+|.+++.+++++|||||+|++.++|.+||+ +|+.+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 355799999999999999999999999999999999999999999999999999999999996 5999999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 543
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=8e-16 Score=123.89 Aligned_cols=89 Identities=28% Similarity=0.509 Sum_probs=78.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|+|+|||+...|-||+.+|.+||.|.+|.|+.+- .-+|||+||+|++.++|++|-+ +++..|.||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34566899999999999999999999999999999998773 4489999999999999999996 59999999999999
Q ss_pred EcccCCCCCCCC
Q 029737 97 LACLGVQRSKPS 108 (189)
Q Consensus 97 ~a~~~~~~~~~~ 108 (189)
.+..++..++.+
T Consensus 170 ~ATarV~n~K~~ 181 (376)
T KOG0125|consen 170 NATARVHNKKKK 181 (376)
T ss_pred ccchhhccCCcc
Confidence 999887655443
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=1e-14 Score=128.42 Aligned_cols=75 Identities=28% Similarity=0.394 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhc--CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..++|||+||++++||++|+++|++| |+|++|.++ ++||||+|++.++|++||+ +++.+|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999775 3499999999999999997 699999999999999
Q ss_pred cccCCC
Q 029737 98 ACLGVQ 103 (189)
Q Consensus 98 a~~~~~ 103 (189)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 977543
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=1.5e-15 Score=133.97 Aligned_cols=79 Identities=30% Similarity=0.553 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++++++|+++|++||.|.+|+|+.|+.|++++|||||+|++.++|++||+ +++..|+|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 6999999999999754
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=2.8e-15 Score=129.62 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
+...++|||+|||..+++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|.+||.+++..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 44
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.5e-15 Score=116.26 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
...+|||+||++.+||++|++||+.||+|.+|+|+++.+ .++||||+|+++++++.||.+++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999999854 4579999999999999999999999999999998763
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=4.4e-15 Score=131.64 Aligned_cols=76 Identities=28% Similarity=0.467 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+|||+|||+++||++|+++|++||.|++|+|.+|+.|++++|||||+|.+.++|++||+ ++...|.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999999999999999999999999999997 47778999999999874
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.3e-16 Score=118.25 Aligned_cols=84 Identities=30% Similarity=0.427 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+-++|||++|..+++|.-|...|-.||.|++|.++.|-+++++|||+||+|+..|+|.+||. +|..+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++++.
T Consensus 86 ~AkP~ 90 (298)
T KOG0111|consen 86 LAKPE 90 (298)
T ss_pred ecCCc
Confidence 99875
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=6.6e-15 Score=124.32 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCH--HHHHHHHH-hCCCccCCeeeEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~--~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
....+||||||++.+++++|+.+|+.||.|.+|.|+ ++|| ||||||+|.+. .++.+||+ +++.++.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345699999999999999999999999999999999 4567 99999999976 68999996 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99863
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=2.2e-14 Score=125.54 Aligned_cols=82 Identities=24% Similarity=0.500 Sum_probs=76.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+.+|+++|+++|++||.|+.+.|+.++.++.++|||||+|.+.++|..||+ +++..|.++.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999996 6999999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 544
No 27
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.58 E-value=4.1e-14 Score=119.84 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
....+|||.|||+++++++|+++|.+||.|+...|......++..+|+||+|.+.++++.||+.+...|+++++.|+..+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34567999999999999999999999999999888765433555599999999999999999999888999999999886
Q ss_pred cCCCC
Q 029737 100 LGVQR 104 (189)
Q Consensus 100 ~~~~~ 104 (189)
.....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 65443
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.4e-14 Score=119.45 Aligned_cols=80 Identities=30% Similarity=0.410 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+.+-|||.||+.++|||.|+++|++||.|+.|+.++| ||||.|.++++|.+|++ +|+++|+|..|+|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 5678999999999999999999999999999988765 99999999999999996 69999999999999999
Q ss_pred cCCCCCCCC
Q 029737 100 LGVQRSKPS 108 (189)
Q Consensus 100 ~~~~~~~~~ 108 (189)
+..+++..+
T Consensus 330 P~~k~k~~r 338 (506)
T KOG0117|consen 330 PVDKKKKER 338 (506)
T ss_pred Chhhhccch
Confidence 877665544
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.2e-14 Score=128.88 Aligned_cols=82 Identities=29% Similarity=0.465 Sum_probs=75.9
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
.....+|||+||++++|+++|+++|++||.|++|+|+.+ .+++++|||||+|++.++|.+||+ +++..|.|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 446678999999999999999999999999999999999 579999999999999999999996 589999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+..+
T Consensus 361 a~~k 364 (562)
T TIGR01628 361 AQRK 364 (562)
T ss_pred ccCc
Confidence 8754
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=1.4e-14 Score=127.53 Aligned_cols=75 Identities=31% Similarity=0.444 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC-CeeeEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID-GRRANC 95 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~-g~~i~v 95 (189)
...++|||+|||++++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+. ++.+|. ++.|.|
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 35689999999999999999999999999999999999 7899999999999999999999974 766664 454433
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.8e-14 Score=124.57 Aligned_cols=78 Identities=32% Similarity=0.593 Sum_probs=74.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
.++|||+|||..+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999999999999999999999999996 69999999999999975
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.5e-16 Score=116.14 Aligned_cols=79 Identities=28% Similarity=0.518 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.++.-|||+|||+++||.||--+|++||+|++|.|++|+.||+++||||+.|+|..+..-||. +|+..|.||.|+|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 466789999999999999999999999999999999999999999999999999999888885 6999999999999764
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=4.3e-14 Score=90.24 Aligned_cols=71 Identities=32% Similarity=0.566 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEE
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCN 96 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~ 96 (189)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++++|||+|.+.++|++|++. ++..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 67889999999999999999975 7788999988763
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.7e-14 Score=112.55 Aligned_cols=89 Identities=35% Similarity=0.468 Sum_probs=80.2
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
+.........|||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||. +++.-|..|.|
T Consensus 55 sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 55 SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 33334446689999999999999999999999999999999999999999999999999999999996 68888999999
Q ss_pred EEEEcccCCC
Q 029737 94 NCNLACLGVQ 103 (189)
Q Consensus 94 ~v~~a~~~~~ 103 (189)
+-+|+..+..
T Consensus 135 RTNWATRKp~ 144 (321)
T KOG0148|consen 135 RTNWATRKPS 144 (321)
T ss_pred eccccccCcc
Confidence 9999976653
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=7.3e-14 Score=88.76 Aligned_cols=70 Identities=36% Similarity=0.597 Sum_probs=64.2
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEE
Q 029737 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCN 96 (189)
Q Consensus 27 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~ 96 (189)
|+|||..+++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|.+|++. ++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999999888899999999999999999999975 7788999988763
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=3.1e-14 Score=101.67 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..--|||.++.+.+||++|.+.|..||+|+.+.|..|+.||..+|||+|+|++.+.|++||. +|+..|.++.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999997 58899999999999996
Q ss_pred cCC
Q 029737 100 LGV 102 (189)
Q Consensus 100 ~~~ 102 (189)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 553
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.2e-14 Score=120.81 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=74.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCC-ccC--CeeeEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAP-VID--GRRANC 95 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~-~i~--g~~i~v 95 (189)
...++|||+.|+..+||+|++++|++||.|++|.|++|.+ +.+||||||.|++.+.|..||+. |+. ++. ...|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3467999999999999999999999999999999999986 99999999999999999999974 553 354 468999
Q ss_pred EEcccCCCCC
Q 029737 96 NLACLGVQRS 105 (189)
Q Consensus 96 ~~a~~~~~~~ 105 (189)
+++..+..+.
T Consensus 201 kFADtqkdk~ 210 (510)
T KOG0144|consen 201 KFADTQKDKD 210 (510)
T ss_pred EecccCCCch
Confidence 9997765554
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=8.6e-14 Score=110.27 Aligned_cols=78 Identities=29% Similarity=0.604 Sum_probs=74.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 99 (189)
.++|||+|||.++|+++|+++|.+||.|..+.+..++.+++++|||||+|.+.+++..|++. ++..|.++.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999999999999999999998999999999999999999999975 7789999999999964
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=9.5e-14 Score=115.90 Aligned_cols=80 Identities=28% Similarity=0.430 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v~~ 97 (189)
...+.|||+.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||.|.+.++|++||+ +|+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999997 5888775 77777755
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 43
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=120.15 Aligned_cols=82 Identities=29% Similarity=0.530 Sum_probs=77.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
+.|||||+|++++|++|.++|++.|.|.+++++.|++||+++||+|++|.+.++++.|++ +++.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999997 5999999999999999655
Q ss_pred CCC
Q 029737 102 VQR 104 (189)
Q Consensus 102 ~~~ 104 (189)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 443
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=4.5e-14 Score=105.46 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=76.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
-....+|||+||+..++++.|.++|-+.|.|.+++|++|+.+...+|||||+|.++|+|+-||+ ++...|.|+.|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3466799999999999999999999999999999999999999999999999999999999997 588889999999999
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 85
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.9e-14 Score=116.00 Aligned_cols=83 Identities=28% Similarity=0.444 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh--CCCccCCe--eeE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPVIDGR--RAN 94 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~--~~~~i~g~--~i~ 94 (189)
|.+.-++||+-+|..++|+||+++|++||.|.+|.|++|+.|+.++|||||.|.++++|.+|+.. |.++|.|- .|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 44556999999999999999999999999999999999999999999999999999999999974 55667664 566
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 111 vk~Ad~E 117 (510)
T KOG0144|consen 111 VKYADGE 117 (510)
T ss_pred ecccchh
Confidence 6666443
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=5.7e-13 Score=85.40 Aligned_cols=73 Identities=32% Similarity=0.583 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEE
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~ 97 (189)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ .+++++||+|.+.++|..|++. ++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988754 7789999999999999999975 77779999988863
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.6e-13 Score=107.88 Aligned_cols=84 Identities=27% Similarity=0.409 Sum_probs=78.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
++.-+.|.|-=||...|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++||. +|+..+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3445689999999999999999999999999999999999999999999999999999999997 699999999999999
Q ss_pred cccCC
Q 029737 98 ACLGV 102 (189)
Q Consensus 98 a~~~~ 102 (189)
+++..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 98753
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.7e-13 Score=115.66 Aligned_cols=83 Identities=36% Similarity=0.544 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhC------C-CccCCe
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA------A-PVIDGR 91 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~------~-~~i~g~ 91 (189)
+...++|||.|||+++||++|.++|++||+|..+.|+.++.|+.++|+|||.|.+..++.+||+.- + ..|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 345589999999999999999999999999999999999999999999999999999999999642 2 358899
Q ss_pred eeEEEEcccC
Q 029737 92 RANCNLACLG 101 (189)
Q Consensus 92 ~i~v~~a~~~ 101 (189)
.|.|..+-.+
T Consensus 369 ~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 LLKVTLAVTR 378 (678)
T ss_pred EEeeeeccch
Confidence 9999988654
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=4.2e-13 Score=117.12 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh---CCCccCCeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVIDGRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~---~~~~i~g~~i~v~~ 97 (189)
+++.|||+|||++++|++|+++|++||.|.+|.|+++ ++||||+|++.++|++||+. +...|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3678999999999999999999999999999998854 57999999999999999963 67789999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8543
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=9e-13 Score=115.02 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=70.5
Q ss_pred CCCccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 19 ~~~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
..+.++|||+||++ .+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|..||+ +++..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44678999999998 69999999999999999999998863 6899999999999999996 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98544
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.42 E-value=1.5e-12 Score=108.73 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHh-hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
...+.+||.|||+++.|.+|+++|. +-|+|+.|.|+.|. ++++||||.|||+++|.+++|++ ++.+++.||.|+|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999995 68999999999996 59999999999999999999998 599999999999988
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
....
T Consensus 121 d~d~ 124 (608)
T KOG4212|consen 121 DHDE 124 (608)
T ss_pred cCch
Confidence 7443
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.4e-12 Score=88.03 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=70.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..-.+-|||.|||+++|.|+..++|.+||.|..|+|-.+++ .+|-|||.|++..+|.+|++ +++..++++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34456899999999999999999999999999999977765 58999999999999999997 599999999999987
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 544
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.39 E-value=4.2e-13 Score=109.95 Aligned_cols=84 Identities=40% Similarity=0.747 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
+.++|||++|+|++++|.|++.|.+||+|.+|.+++|+.+++++||+||+|++.+.+.++|....++|+++.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77899999999999999999999999999999999999999999999999999999999998888899999999998876
Q ss_pred CCCC
Q 029737 101 GVQR 104 (189)
Q Consensus 101 ~~~~ 104 (189)
+...
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 6543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=110.68 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEccc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~ 100 (189)
--+|.|.|||+.+.+.+|+.+|+.||.|.+|.|++.++ ++.+|||||.|.+..+|..||+ .|.++|+||.|-|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45899999999999999999999999999999998776 6677999999999999999998 599999999999999966
Q ss_pred CCC
Q 029737 101 GVQ 103 (189)
Q Consensus 101 ~~~ 103 (189)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 533
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.37 E-value=4.2e-12 Score=104.08 Aligned_cols=87 Identities=32% Similarity=0.586 Sum_probs=80.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
...+|||++||.+++++++++.|++||.|.++.++.|+++.++++|+||.|.+++++.+++...-++|+++.++|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCC
Q 029737 101 GVQRSKP 107 (189)
Q Consensus 101 ~~~~~~~ 107 (189)
+......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 7655433
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=1.3e-12 Score=104.07 Aligned_cols=71 Identities=28% Similarity=0.504 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
.+|||+|||.++++.+|+.+|++||+|.+|+|+++ |+||..++...++.||+ +++.+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999999999999876 99999999999999997 7999999999999988765
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.34 E-value=1.6e-12 Score=110.98 Aligned_cols=86 Identities=30% Similarity=0.500 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..+..+|||+||.++++|++|+.+|+.||.|+.|.+.+|.+||.++||+||+|.+.++|.+|++ +|+.+|.|+.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3455669999999999999999999999999999999999999999999999999999999986 699999999999988
Q ss_pred cccCCCC
Q 029737 98 ACLGVQR 104 (189)
Q Consensus 98 a~~~~~~ 104 (189)
...+...
T Consensus 355 v~~r~~~ 361 (549)
T KOG0147|consen 355 VTERVDT 361 (549)
T ss_pred eeeeccc
Confidence 7655443
No 55
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.8e-12 Score=102.92 Aligned_cols=83 Identities=31% Similarity=0.422 Sum_probs=74.5
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh--CCCccC
Q 029737 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPVID 89 (189)
Q Consensus 12 ~~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~--~~~~i~ 89 (189)
....+++|...++|||++|-..++|.+|+++|.+||+|+++.++.. ++||||+|.++++|+.|.+. +...|+
T Consensus 218 ~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 218 GTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeec
Confidence 3467788999999999999999999999999999999999998765 45999999999999999974 777799
Q ss_pred CeeeEEEEccc
Q 029737 90 GRRANCNLACL 100 (189)
Q Consensus 90 g~~i~v~~a~~ 100 (189)
|++|+|.|.++
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999999955
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=7.8e-12 Score=81.14 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=53.8
Q ss_pred HHHHHHHHh----hcCCEeEEE-EEecCCC--CCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 36 KETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 36 e~~l~~~F~----~~G~i~~v~-i~~~~~t--g~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
+++|+++|+ +||.|.+|. |+.++.+ +.++||+||+|.+.++|.+|++ +++..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777766 8999999999999999999997 5999999998876
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=9.4e-13 Score=107.83 Aligned_cols=77 Identities=31% Similarity=0.563 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
-.++|||+.+.+++.|+.|+..|..||.|++|.+-+|+.|++++|||||+|+-.|.|+-|++ +|+..+.||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 46899999999999999999999999999999999999999999999999999999999997 599999999999864
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.3e-12 Score=100.85 Aligned_cols=87 Identities=29% Similarity=0.339 Sum_probs=80.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
+.+..+.++|||-.||.+..+.||...|-.||.|.+.++..|+.|..+|+|+||.|++..+++.||. +|+..|.-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 4456688999999999999999999999999999999999999999999999999999999999997 599999999999
Q ss_pred EEEcccCC
Q 029737 95 CNLACLGV 102 (189)
Q Consensus 95 v~~a~~~~ 102 (189)
|.+++++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 98886553
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=2e-11 Score=106.99 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=63.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhc------------CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF------------GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~------------G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
+..+...++|||+|||+.+|+++|+++|.++ +.|..+.+ .+.++||||+|.+.++|..||.+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3445577899999999999999999999875 23334433 34578999999999999999998
Q ss_pred CCCccCCeeeEEEEc
Q 029737 84 AAPVIDGRRANCNLA 98 (189)
Q Consensus 84 ~~~~i~g~~i~v~~a 98 (189)
++..|.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 999999999888643
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8e-12 Score=102.03 Aligned_cols=80 Identities=31% Similarity=0.456 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al-~~~~~~i~g~~i~v~~a~ 99 (189)
+..-|||..|.+-+|+++|+-+|+.||.|.+|.+++|..||.+..||||+|++.+++++|. ++++..|+.++|.|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4568999999999999999999999999999999999999999999999999999999999 578889999999999875
Q ss_pred c
Q 029737 100 L 100 (189)
Q Consensus 100 ~ 100 (189)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 3
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=3.7e-11 Score=74.41 Aligned_cols=55 Identities=31% Similarity=0.512 Sum_probs=48.7
Q ss_pred HHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 39 l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
|+++|++||+|.++.+..++ +++|||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987653 5799999999999999997 6999999999999885
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.1e-11 Score=101.74 Aligned_cols=83 Identities=33% Similarity=0.511 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEccc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLACL 100 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 100 (189)
...|||.||+++++..+|.++|+.||+|.+|++.++.. | ++|| ||+|+++++|.+||++ |+..+.++.|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 33499999999999999999999999999999999974 5 9999 9999999999999975 89999999999988866
Q ss_pred CCCCCCC
Q 029737 101 GVQRSKP 107 (189)
Q Consensus 101 ~~~~~~~ 107 (189)
+.++..+
T Consensus 153 ~~er~~~ 159 (369)
T KOG0123|consen 153 KEEREAP 159 (369)
T ss_pred hhhhccc
Confidence 6554433
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.23 E-value=2e-11 Score=91.35 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a 98 (189)
-..+|||+||.++++|..|.+.|+.||.|.. -+|+++..|+.+++|+||.|++.+.+.+||+. ++..++.+.|.|+++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3479999999999999999999999998765 47899999999999999999999999999974 888999999999999
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 43
No 64
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.3e-10 Score=91.65 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=78.3
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
.+..+...-.|||-||.++++|.-|.++|.+||.|..|+|++|..|.+.|||+||...+-++|..||. +|+..+.++.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 34455567799999999999999999999999999999999999999999999999999999999996 69999999999
Q ss_pred EEEEccc
Q 029737 94 NCNLACL 100 (189)
Q Consensus 94 ~v~~a~~ 100 (189)
.|++...
T Consensus 351 QVsFKtn 357 (360)
T KOG0145|consen 351 QVSFKTN 357 (360)
T ss_pred EEEEecC
Confidence 9998743
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=2.7e-11 Score=96.60 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=72.4
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
.+..++|+|+||.+.++..||++.|++||.|.+|+|+++ |+||.|+..++|..||+ +++.+|+|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 557789999999999999999999999999999999866 99999999999999996 699999999999999
Q ss_pred cccCCCCCC
Q 029737 98 ACLGVQRSK 106 (189)
Q Consensus 98 a~~~~~~~~ 106 (189)
+..++....
T Consensus 147 stsrlrtap 155 (346)
T KOG0109|consen 147 STSRLRTAP 155 (346)
T ss_pred eccccccCC
Confidence 977665443
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=7.1e-11 Score=93.39 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC-ccCC--eeeEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP-VIDG--RRANCN 96 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~-~i~g--~~i~v~ 96 (189)
+.++|||+.|...-.|||++.+|..||.|++|.+.+..+ |.+|||+||.|.+..+|+.||. +++. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 567999999999999999999999999999999999885 8999999999999999999997 4543 3444 568898
Q ss_pred EcccCCCC
Q 029737 97 LACLGVQR 104 (189)
Q Consensus 97 ~a~~~~~~ 104 (189)
++....++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 88655443
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.3e-10 Score=95.48 Aligned_cols=82 Identities=17% Similarity=0.367 Sum_probs=75.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
+...-.+|||..+.++++|+||+.+|+.||+|++|.+.+++.++.+|||+||+|.+..+...||. +|...+.|+.|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34456799999999999999999999999999999999999889999999999999999999996 69899999999998
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
.+-
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 764
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=85.91 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhc-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
+......-+||..+|..+.+.+|..+|.+| |.|+.+++-+++.||.++|||||+|++.+.|.-|.+ +|+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344555678999999999999999999988 788888998999999999999999999999999997 588888999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887554
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.07 E-value=3.2e-10 Score=94.99 Aligned_cols=75 Identities=25% Similarity=0.481 Sum_probs=67.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~ 97 (189)
..+.++|||.|||.++||..|++-|.+||.|..+.|+. .++++| .|.|.++++|+.|+.+ ++..++|+.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34678899999999999999999999999999999853 477887 8999999999999985 99999999999986
Q ss_pred c
Q 029737 98 A 98 (189)
Q Consensus 98 a 98 (189)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=3.6e-10 Score=100.08 Aligned_cols=72 Identities=22% Similarity=0.416 Sum_probs=65.9
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+++|||+.|+.+++|.||..+|+.||+|.+|.++. +++||||...++.+|.+|+. ++...+..+.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 47999999999999999999999999999998764 47899999999999999996 58888999999999985
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=4.8e-10 Score=96.66 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
-.+.|||.+|...+...+|+.+|++||+|+-.+++++..+.-.++|+||++.+.++|.+||+ ++..+|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999999998777789999999999999999997 68899999999999987
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.06 E-value=4.2e-10 Score=89.09 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=79.4
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
..+.+.+.+||+|+.+.+|.++++.+|+.||.|..|.|+.++.++.+++|+||+|.+.+.++.++.+++..|.++.++|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88555
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.1e-10 Score=100.78 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=75.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+.+.++|+|.|||+..+..+++.+|..||.|.+|+|+.....+.++|||||+|-+..+|.+|+. +....+.||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 34457899999999999999999999999999999999886667789999999999999999997 46677999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
|+...
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 98643
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.05 E-value=1.3e-09 Score=86.45 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+...++|+|.|||+.++++||+++|.+|+.++.+.+..++ +|++.|.|-|.|+..++|.+||+ +++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 55566899999999999999999999999999999888887 59999999999999999999997 58888999999998
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
+.....
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 875443
No 75
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.00 E-value=2.6e-09 Score=82.66 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=72.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHH----HHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
+-.+..+|||.||+..+..++|+. +|++||.|.+|...+ |.+.+|-|||.|.+.+.|..|++ +++..+-|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344556999999999999999888 999999999987754 46789999999999999999997 5899999999
Q ss_pred eEEEEcccCCC
Q 029737 93 ANCNLACLGVQ 103 (189)
Q Consensus 93 i~v~~a~~~~~ 103 (189)
++|.+|+.+..
T Consensus 82 mriqyA~s~sd 92 (221)
T KOG4206|consen 82 MRIQYAKSDSD 92 (221)
T ss_pred hheecccCccc
Confidence 99999976543
No 76
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.97 E-value=3e-09 Score=90.26 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=68.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
-.+..-|-+.+|||++|++||.+||+.++ |+.+.+.+ .+|+..|-|||+|.+++++++|++++...+..+.|+|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 34556778889999999999999999985 77766554 4799999999999999999999999999999999999877
Q ss_pred c
Q 029737 99 C 99 (189)
Q Consensus 99 ~ 99 (189)
.
T Consensus 84 ~ 84 (510)
T KOG4211|consen 84 G 84 (510)
T ss_pred C
Confidence 4
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.9e-09 Score=93.73 Aligned_cols=77 Identities=32% Similarity=0.558 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCC---CcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLA 98 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg---~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a 98 (189)
++|||.||++++|.++|+.+|.+.|.|.++.|...+... .+.||+||+|.+.++|++|++. +++.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999987766422 2459999999999999999985 789999999999999
Q ss_pred c
Q 029737 99 C 99 (189)
Q Consensus 99 ~ 99 (189)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.7e-09 Score=89.27 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..|||+ +++||..|.++|+.+|.|.+|++.+|. | +.|||||.|.+.++|++||+ +|...|.|+.|+|-|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 479999 899999999999999999999999998 6 99999999999999999997 58888999999999884
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.9e-09 Score=82.81 Aligned_cols=69 Identities=28% Similarity=0.567 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
.+|||++||+.+.+.+|++||.+||.|.+|.+. .+|+||+|++..+|..||. +++.+|.+..+.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 579999999999999999999999999998773 4699999999999999995 69999999888888773
No 80
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.83 E-value=2.4e-08 Score=81.98 Aligned_cols=84 Identities=27% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEe--------EEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID 89 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~ 89 (189)
....-+|||-+||..+++++|.++|.+++.|. .|.|-++++|++.|+-|.|.|+|...|+.||+. +...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667999999999999999999999999876 478889999999999999999999999999985 899999
Q ss_pred CeeeEEEEcccCC
Q 029737 90 GRRANCNLACLGV 102 (189)
Q Consensus 90 g~~i~v~~a~~~~ 102 (189)
+..|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999886554
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.82 E-value=2.3e-08 Score=81.67 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEe--------EEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCcc
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVI 88 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i 88 (189)
++...++|||.|||.++|.+++.++|++||.|. .|+|.++.. |+.+|=|.+.|-..+++.-||+. +...|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 345667899999999999999999999999776 478888875 99999999999999999999985 88899
Q ss_pred CCeeeEEEEcccC
Q 029737 89 DGRRANCNLACLG 101 (189)
Q Consensus 89 ~g~~i~v~~a~~~ 101 (189)
.|+.|+|+.|+-.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999998644
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2e-09 Score=82.94 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a~ 99 (189)
..++|||+||...++|+-|.++|-+.|.|..|.|..+++ ++.+ ||||+|+++.++.-|+++ |+..+.++.+.|.+-+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 457899999999999999999999999999999988876 5566 999999999999999986 8888988888876643
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.79 E-value=5.1e-08 Score=75.56 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEec-CCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---Ceee
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRRA 93 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~---g~~i 93 (189)
....++|||.+||.++...||..+|..|--.+.+.|... +.....+-++||+|.+..+|.+|+. +|+..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345799999999999999999999998866666555332 2222345799999999999999996 5888876 6789
Q ss_pred EEEEcccCCCCCC
Q 029737 94 NCNLACLGVQRSK 106 (189)
Q Consensus 94 ~v~~a~~~~~~~~ 106 (189)
+|++++.....++
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9999966544444
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.77 E-value=6.5e-09 Score=81.73 Aligned_cols=84 Identities=31% Similarity=0.506 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+++..+||++.|.-+++++.|-..|.+|-.....++++++.|++++||+||.|.+..++..|+. +++..+..+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45677899999999999999999999999887788899999999999999999999999999995 69999999988887
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
....+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 66443
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=1.3e-07 Score=64.88 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhh--cCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC----CeeeEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID----GRRANC 95 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~----g~~i~v 95 (189)
++|.|.|||...|.++|.+++.+ .|....+.++.|..+..+.|||||.|.+.+.|.+..+. ++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999865 36777888999988999999999999999999998864 766654 567888
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
.+|+.+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888554
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.65 E-value=1.1e-07 Score=80.86 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
....-|-+.+||+.||++||.+||+..-.|.. |.++.++. +++.|.|||.|++.+.|++|+..+...|..+.|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 35567889999999999999999987644444 45566654 78999999999999999999999999999999999776
Q ss_pred c
Q 029737 99 C 99 (189)
Q Consensus 99 ~ 99 (189)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=4.8e-08 Score=84.11 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=63.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
.+....+|+|-|||.++++++|+++|+.||+|+.|+.- -..++.+||+|-|..+|+.|++ ++..+|.++.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 46677899999999999999999999999999997653 4457899999999999999996 588889888666
No 88
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.58 E-value=4.4e-07 Score=74.51 Aligned_cols=75 Identities=20% Similarity=0.392 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANC 95 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v 95 (189)
.--.+||+||-|++|++||.+.+..-| .+.++++..++.+|.+||||+|...+..++++.++. ...+|.|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 344799999999999999998887666 577888899999999999999999999999999885 667788876554
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.56 E-value=2.6e-08 Score=85.59 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=80.8
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeee
Q 029737 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i 93 (189)
....++.+.+++|+--|...+++.+|++||+.+|.|.+|.|+.|+.+++++|.+||+|.|.+++..||.+.+..+.|..|
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv 250 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPV 250 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCcee
Confidence 34456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 029737 94 NCNLACLGVQ 103 (189)
Q Consensus 94 ~v~~a~~~~~ 103 (189)
.|........
T Consensus 251 ~vq~sEaekn 260 (549)
T KOG0147|consen 251 IVQLSEAEKN 260 (549)
T ss_pred EecccHHHHH
Confidence 9987654433
No 90
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=7.7e-07 Score=78.81 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecC---CCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
|...+.|||+||++.++|+.|...|..||.|..|+|+..+ +..+.+-|+||.|-++.++++|++ +++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4566899999999999999999999999999999998764 223456799999999999999996 588889999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
+-|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988854
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.36 E-value=4.8e-07 Score=73.97 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCccEEE-EcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 20 TTYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~if-V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
....++| |++|+.++++++|+.+|..++.|..++++.++.++..+||+||+|.+......++......+.++.+.+...
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 3455666 999999999999999999999999999999999999999999999999999888876566788887777776
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
.+
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 33
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=1e-06 Score=76.31 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||++||..++++++++++..||.+....++.+..++-++||||.+|.+......|+. +|+..+.++.|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34466799999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred EcccCCCC
Q 029737 97 LACLGVQR 104 (189)
Q Consensus 97 ~a~~~~~~ 104 (189)
.+......
T Consensus 365 ~A~~g~~~ 372 (500)
T KOG0120|consen 365 RAIVGASN 372 (500)
T ss_pred hhhccchh
Confidence 88665433
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.25 E-value=3.7e-06 Score=58.78 Aligned_cols=70 Identities=30% Similarity=0.427 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh---C---CCccCCeeeEEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---A---APVIDGRRANCN 96 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~---~---~~~i~g~~i~v~ 96 (189)
.-|+|.+++..++.++|+++|++|+.|..|.+...-. .|||.|.+.++|+.|++. . ...|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3578889999999999999999999999999876532 899999999999999953 3 345777766666
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.18 E-value=1.5e-05 Score=52.85 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=45.7
Q ss_pred cEEEEcCCCCCCcHHHH----HHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 23 TKVFVGGLAWETQKETM----EKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l----~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.-|||.|||.+.+...| +.++.-|| .|.+| ..+.|+|.|.+.+.|.+|.+ +++..+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 36999999998887664 55666786 55554 13589999999999999996 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88433
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.12 E-value=2.1e-05 Score=66.03 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=65.7
Q ss_pred ccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
...|.|.||.+ .+|.+.|..+|..||+|.+|+|+.++. --|.|.+.|...|+-|++ ++++.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57889999964 589999999999999999999998753 479999999999999997 59999999999999985
Q ss_pred c
Q 029737 100 L 100 (189)
Q Consensus 100 ~ 100 (189)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.03 E-value=6.5e-06 Score=64.02 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=51.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~ 87 (189)
+.....+|||.||..+|+|++|+.+|+.|--...++|... . .-..||++|++.+.|..|+. +.+..
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcce
Confidence 4456679999999999999999999999976655555322 1 24589999999999999985 44443
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=5.7e-06 Score=64.55 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=62.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~ 97 (189)
..+.+.|+|.+|+..+.+.+|.++|..+|.+....+ ..+++||+|++.+++.+||+. ++..+.++.|.+.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 456789999999999999999999999999855544 345999999999999999975 88999999999944
Q ss_pred c
Q 029737 98 A 98 (189)
Q Consensus 98 a 98 (189)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.97 E-value=2.7e-05 Score=47.51 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
+.|-|.+.+++..+. +..+|..||+|+++.+... .-+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888998777644 5558889999999988622 338999999999999985
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.1e-05 Score=65.35 Aligned_cols=64 Identities=34% Similarity=0.424 Sum_probs=59.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHh-hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
++-++||||+||.-++.++|-.+|+ -||.|..+.|-+|++=+.++|-+-|+|++..+-.+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4667999999999999999999998 699999999999977788999999999999999999964
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=5.1e-05 Score=65.36 Aligned_cols=63 Identities=27% Similarity=0.517 Sum_probs=50.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCC---CCccc---EEEEEECCHHHHHHHHHh
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKG---YGFVTFREPEAAMKACVD 83 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~t---g~~~G---~afV~F~~~~~a~~al~~ 83 (189)
.-+++||||+||++++|++|...|..||.+ .|.++...+. --++| |+|+.|+++.++.+.|..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 456899999999999999999999999985 5666632211 12467 999999999998888765
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.84 E-value=6.2e-05 Score=66.98 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
+-|-|.|+|++++-+||.+||..|-.+..-.+++..+.|+..|.|.|.|++.++|.+|.+ +++..|..+.|++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 367789999999999999999999655433334444569999999999999999999997 688899999888865
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=4.2e-05 Score=63.82 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=64.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCC-EeE--EEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEE
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGE-ILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~-i~~--v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~ 97 (189)
...|-+++||++.+.|||-+||..|-. |.. |.++.+.+ |++.|-|||+|.+.|+|..|... +++..+.|.|+|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 458999999999999999999988863 444 77777765 99999999999999999999976 55555688888876
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=3.7e-05 Score=64.82 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=56.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEec---CCCCC--c--------ccEEEEEECCHHHHHHHHHhC
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KATGR--S--------KGYGFVTFREPEAAMKACVDA 84 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~tg~--~--------~G~afV~F~~~~~a~~al~~~ 84 (189)
++.++++|.+.|||.+-.-+.|.++|..+|.|+.|+|... +++.+ + +-||+|+|+..+.|.+|.+++
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458899999999999888999999999999999999776 33322 1 468999999999999999864
No 104
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=3e-05 Score=64.62 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=59.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhc----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 24 KVFVGGLAWETQKETMEKYFEQF----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
-|-+++||+++++.|+.+||..- +..+.|.+++.+ +|+..|-|||.|..+++|+.||.++...|..|.|++-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45667999999999999999521 245667666665 489999999999999999999998888888777666443
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00024 Score=49.10 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=51.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEE-EEecC------CCCCcccEEEEEECCHHHHHHHHHhCCCccCCe-e
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR-R 92 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~~------~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~-~ 92 (189)
..+-|.|-++|+.. .+.|-+.|++||+|.+.. +.++. ........-.|.|+++.+|.+||..|+..|.|. .
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 45578898999884 577778899999988764 11110 001124588999999999999999999999885 4
Q ss_pred eEEEEc
Q 029737 93 ANCNLA 98 (189)
Q Consensus 93 i~v~~a 98 (189)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446555
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.64 E-value=0.00025 Score=55.21 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=60.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v~ 96 (189)
..+...+|+.|||.+++.+.|..+|.+|.-.++|+++... .+.|||+|.+...+..|.. +.+..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3456789999999999999999999999988999887653 5699999999888888875 4555554 5666666
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
++
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 55
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=0.00018 Score=59.27 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=60.1
Q ss_pred ccEEEEcCCCCCCcHHH----H--HHHHhhcCCEeEEEEEecCCC-CCcccEE--EEEECCHHHHHHHHHh-CCCccCCe
Q 029737 22 YTKVFVGGLAWETQKET----M--EKYFEQFGEILEAVVITDKAT-GRSKGYG--FVTFREPEAAMKACVD-AAPVIDGR 91 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~----l--~~~F~~~G~i~~v~i~~~~~t-g~~~G~a--fV~F~~~~~a~~al~~-~~~~i~g~ 91 (189)
-.-+||-+|++.+..|+ | .++|.+||.|..|.|.+...+ ....+.+ ||+|.+.|+|.+||.. ++..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999998877666 2 589999999999876543211 1112334 9999999999999975 99999999
Q ss_pred eeEEEEccc
Q 029737 92 RANCNLACL 100 (189)
Q Consensus 92 ~i~v~~a~~ 100 (189)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=7.7e-05 Score=67.63 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEccc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLACL 100 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 100 (189)
..+|||.|+|+..|.++|+.+++++|.+++++++..+. |+++|.+||.|.++.++.+++.. +...+.-+.+.|.+..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45899999999999999999999999999999888875 99999999999999999999854 66667777777777655
Q ss_pred CCCC
Q 029737 101 GVQR 104 (189)
Q Consensus 101 ~~~~ 104 (189)
.+.+
T Consensus 815 ~~~K 818 (881)
T KOG0128|consen 815 ERDK 818 (881)
T ss_pred cccc
Confidence 4333
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.0015 Score=49.72 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCcc--CCee
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVI--DGRR 92 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i--~g~~ 92 (189)
++......+|.|.+||++.+|.||+++..+.|+|+...+.+| |.+.|+|...|+.+-||.. +...+ .|..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 334455679999999999999999999999999999988776 3789999999999999964 44333 3444
Q ss_pred eEEEE
Q 029737 93 ANCNL 97 (189)
Q Consensus 93 i~v~~ 97 (189)
..+.+
T Consensus 182 ~yirv 186 (241)
T KOG0105|consen 182 AYIRV 186 (241)
T ss_pred eeEEe
Confidence 44433
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.35 E-value=0.00074 Score=56.93 Aligned_cols=77 Identities=9% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v~~ 97 (189)
.++.+|...|+|++++||+|++.|.+-|...+..... ++.+-++++.+++.|+|..|+. ++.+.+. +..++|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 3556899999999999999999999888654433221 3335599999999999999996 5777765 45899998
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 843
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0013 Score=57.63 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=61.2
Q ss_pred CCccEEEEcCCCCCCc------HHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-Ce
Q 029737 20 TTYTKVFVGGLAWETQ------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GR 91 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~t------e~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~ 91 (189)
.-...|+|-|+|.--. ..-|..+|+++|+|..+.++.+.++| .+||.|++|.+..+|+.|++ +|++.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3446789999985322 23366888999999999999887755 89999999999999999996 5888776 66
Q ss_pred eeEEEEc
Q 029737 92 RANCNLA 98 (189)
Q Consensus 92 ~i~v~~a 98 (189)
.+.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777543
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.31 E-value=0.0011 Score=48.60 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=45.0
Q ss_pred HHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcccC
Q 029737 38 TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 38 ~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~~ 101 (189)
+|-+.|..||++.=|+++.+ .-.|+|.+-++|.+|+.+++.+++|+.|+|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 56677788999888887654 568999999999999999999999999999987553
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.23 E-value=0.00093 Score=55.81 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=67.9
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh---CCCcc
Q 029737 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVI 88 (189)
Q Consensus 12 ~~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~---~~~~i 88 (189)
+..++.....+--|.|++|-..++|.||-+.++.||.|..|.++..+ .-+.|+|+|.+.|++++.. +...+
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i 94 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYI 94 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccc
Confidence 34455555666789999999999999999999999999998876553 3799999999999999953 56678
Q ss_pred CCeeeEEEEccc
Q 029737 89 DGRRANCNLACL 100 (189)
Q Consensus 89 ~g~~i~v~~a~~ 100 (189)
.|+...++++..
T Consensus 95 ~gq~Al~NySts 106 (494)
T KOG1456|consen 95 AGQQALFNYSTS 106 (494)
T ss_pred cCchhhcccchh
Confidence 898888888743
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.21 E-value=1.5e-05 Score=72.10 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=60.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCC
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g 90 (189)
+..++||.||+..+.+++|...|..++.+..+++.-++.+++.+|+|||+|.+.+++.+||..+...+.+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3468999999999999999999999999888888767778999999999999999999999875444444
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.20 E-value=0.00035 Score=55.44 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=58.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCC--------CCccc----EEEEEECCHHHHHHHHH-hCCCc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSKG----YGFVTFREPEAAMKACV-DAAPV 87 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~t--------g~~~G----~afV~F~~~~~a~~al~-~~~~~ 87 (189)
..--||+++||+.....-|+++|+.||+|-.|.|.....+ +.++. -+.|+|.+...|..+.+ +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999988776555 23332 35599999999988886 48888
Q ss_pred cCCe
Q 029737 88 IDGR 91 (189)
Q Consensus 88 i~g~ 91 (189)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 8887
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.11 E-value=0.0029 Score=41.98 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=41.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
..+-.||. +|.++...||.++|+.||.| .|.++.|. -|||...+++.+..++..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 34456666 99999999999999999986 67777664 699999999999988864
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.0018 Score=56.52 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHhhcCCEeEEEEEecCCC---CCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 41 KYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 41 ~~F~~~G~i~~v~i~~~~~t---g~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.-+.+||.|..|.|+++-.. .-..|..||+|.+.+++++|.+ +++.++.++.|...+-
T Consensus 428 ~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 428 TECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 33468999999999887222 2346889999999999999996 5999999999988875
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.03 E-value=0.0066 Score=50.87 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCCCCccEEEEcCCCCC-CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 16 QFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
+.+..+.+-+.|-+|... +.-+.|..+|-.||.|+.|++++.+ .|-|.|+.-|..++++||. +++..+-|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 345567788999999875 5678899999999999999999876 4689999999999999996 68888888888
Q ss_pred EEEEcc
Q 029737 94 NCNLAC 99 (189)
Q Consensus 94 ~v~~a~ 99 (189)
.|..++
T Consensus 356 ~v~~Sk 361 (494)
T KOG1456|consen 356 NVCVSK 361 (494)
T ss_pred EEeecc
Confidence 887774
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.97 E-value=0.0074 Score=37.90 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=44.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhc---CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
...+|+|.+++ +.+.++|+.+|..| .....|.++.|. -|=|.|.+.+.|.+||.
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 34689999997 57789999999998 124688888875 47799999999999985
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.73 E-value=0.0025 Score=53.60 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=61.8
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCC---CCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~t---g~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
..-|.|.||.+.+|.++++.+|.-.|+|.++.|..+... ....-.|||.|.|...+..|-.+.+..+-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347999999999999999999999999999988764321 23456999999999999998888666666776666554
No 121
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.71 E-value=0.0082 Score=49.76 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=58.8
Q ss_pred CccEEEEcCCC----CCCc-------HHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 029737 21 TYTKVFVGGLA----WETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (189)
Q Consensus 21 ~~~~ifV~nLp----~~~t-------e~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i 88 (189)
..++|.+.|+= ...+ +++|++-.++||.|.+|.|.-. .+.|.+-|.|.+.++|..||+ +++..+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 45789999872 2223 3555666789999999976532 257899999999999999998 599999
Q ss_pred CCeeeEEEEccc
Q 029737 89 DGRRANCNLACL 100 (189)
Q Consensus 89 ~g~~i~v~~a~~ 100 (189)
+||.|..++-.-
T Consensus 340 dgRql~A~i~DG 351 (382)
T KOG1548|consen 340 DGRQLTASIWDG 351 (382)
T ss_pred cceEEEEEEeCC
Confidence 999999887643
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.44 E-value=0.0035 Score=56.20 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=62.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
.-...|||..||..+++.++.++|++.-.|++ |.|.+-+ +++.++.|||+|.+++++.+|+. .+.+.+..+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34568999999999999999999987666766 6665554 57889999999999888777775 477778888888854
No 123
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.30 E-value=0.0023 Score=50.85 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=44.8
Q ss_pred hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 45 QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 45 ~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+||+|+++.|-.+.. -..+|-+||.|...++|++|++ +++.-+.|+.|..++..
T Consensus 92 kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 899999986655432 3457899999999999999997 58888999999988764
No 124
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.024 Score=46.28 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCee-eEEEE
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR-ANCNL 97 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~-i~v~~ 97 (189)
..=|-|-++|+... .-|-.+|++||+|++.... ..-.+-+|.|.++.+|++||.+++..|++.. |-|+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 34455667887654 4566789999998876443 2234889999999999999999999998763 33443
No 125
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.15 E-value=0.023 Score=46.26 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCEeEEEEEecCCCCCcc-cEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 36 e~~l~~~F~~~G~i~~v~i~~~~~tg~~~-G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
++++++..++||.|..|.|..++.-.... ---||+|+..++|.+|+. +|+..|.|+.+..-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45677888999999999887764322222 357999999999999995 699999999766544
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.07 E-value=0.0041 Score=52.86 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=54.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CC-CccCCeeeEEEEccc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AA-PVIDGRRANCNLACL 100 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~-~~i~g~~i~v~~a~~ 100 (189)
.++|++||.+.++..+|+.+|...-.-..-.++. ..||+||.+.+...+.+|++. ++ .++.|+++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999995431001111111 246999999999999999985 44 458899988887755
Q ss_pred CC
Q 029737 101 GV 102 (189)
Q Consensus 101 ~~ 102 (189)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 127
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.04 E-value=0.058 Score=39.52 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCCCCccEEEEcCCCCCCc-HHHHH---HHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCee
Q 029737 17 FGDTTYTKVFVGGLAWETQ-KETME---KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~t-e~~l~---~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~ 92 (189)
..+.+..+|.|.=|..++. .+||+ ..++.||.|.+|.+. | +--|.|.|.|..+|=+|+..-....-|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 4567888999987776654 34444 455789999999764 2 33799999999999999987555677888
Q ss_pred eEEEEc
Q 029737 93 ANCNLA 98 (189)
Q Consensus 93 i~v~~a 98 (189)
+.++|.
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 888876
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.94 E-value=0.009 Score=47.63 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=52.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
..|||.||...++-+.|++.|+.||.|....+..|- -++..+-++|+|...-.+.+|++.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 689999999999999999999999999876555553 378888999999999999999865
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.74 E-value=0.0034 Score=57.64 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=61.7
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
....++||++||+..+++.+|+..|..+|.|.+|.|-+.+. +.-.-|+||.|.+.+.+..|+. +....|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34668999999999999999999999999999999866543 3344599999999998888884 566555544445544
Q ss_pred c
Q 029737 98 A 98 (189)
Q Consensus 98 a 98 (189)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 130
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.70 E-value=0.0079 Score=51.72 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=57.6
Q ss_pred EEEEcCCCCCC-cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcccC
Q 029737 24 KVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 24 ~ifV~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~~ 101 (189)
.|-+.-.|+.. |.++|..+|.+||+|..|.+-...+ .|.|+|.+..+|-.|-..+...|+++.|+|.|-.+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34444445543 5799999999999999998855433 799999999999888777888999999999998663
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.63 E-value=0.017 Score=53.29 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=63.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC--CeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--GRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~--g~~i~ 94 (189)
.-...+.+||++|..++....|...|..||.|..|.+-.. .-|++|.|++...++.|++ +.+..|. .+.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3446679999999999999999999999999999877332 3499999999999999996 5666665 36688
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|.++.+.
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 8887643
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.13 E-value=0.026 Score=50.00 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHh-hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc---cCCeee
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV---IDGRRA 93 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~---i~g~~i 93 (189)
...++-|||.||-.-.|.-+|++++. ..|.|++..| | +-+-+|||.|.+.++|.+.+. +++.. -+.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 44667999999999999999999998 5667776633 2 235589999999999988886 46554 356788
Q ss_pred EEEEcc
Q 029737 94 NCNLAC 99 (189)
Q Consensus 94 ~v~~a~ 99 (189)
.+.+..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888764
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.12 E-value=0.02 Score=43.70 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhh-cCCE---eEEEEEecCCC-C-CcccEEEEEECCHHHHHHHHHh-CCCccCC--
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDKAT-G-RSKGYGFVTFREPEAAMKACVD-AAPVIDG-- 90 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~~t-g-~~~G~afV~F~~~~~a~~al~~-~~~~i~g-- 90 (189)
....+|.|++||+++||+++.+.++. ++.. ..+.-.....+ . ....-|||.|.+.+++...+.. +++.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999987765 5544 23331122111 1 1235799999999998888864 7665432
Q ss_pred ---eeeEEEEc
Q 029737 91 ---RRANCNLA 98 (189)
Q Consensus 91 ---~~i~v~~a 98 (189)
....|++|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 24556666
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.66 E-value=0.031 Score=50.00 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a 98 (189)
.+..++||+|+...+..+-++.++..||.|..+.... |+|.+|........|+.+ ....+++..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3455899999999999999999999999988764432 999999999999999975 667788887766553
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.22 E-value=0.1 Score=46.06 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=56.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhh--cCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh---CCCccCCeeeEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVIDGRRANC 95 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~---~~~~i~g~~i~v 95 (189)
+-+-|.++.||.++-+|+++.+|+. |-.+.+|.+-.+. -=||+|++..+|+.|.+. .-++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4456778899999999999999964 6778888775442 358999999999999863 456788888777
Q ss_pred EEccc
Q 029737 96 NLACL 100 (189)
Q Consensus 96 ~~a~~ 100 (189)
.++..
T Consensus 247 RIKai 251 (684)
T KOG2591|consen 247 RIKAI 251 (684)
T ss_pred hhhhh
Confidence 66543
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.14 E-value=0.018 Score=47.51 Aligned_cols=78 Identities=27% Similarity=0.384 Sum_probs=57.1
Q ss_pred cEEEEcCCCCCCcHHHH---HHHHhhcCCEeEEEEEecCC--CC-CcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 23 TKVFVGGLAWETQKETM---EKYFEQFGEILEAVVITDKA--TG-RSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l---~~~F~~~G~i~~v~i~~~~~--tg-~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+||-+|+..+.++++ .+.|.+||.|..|.+..++. +. -.-.-++|+|...++|..||. .++..++++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56788889877655444 36788999999998877652 11 122358999999999999996 4888888887666
Q ss_pred EEccc
Q 029737 96 NLACL 100 (189)
Q Consensus 96 ~~a~~ 100 (189)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66544
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.08 E-value=0.036 Score=45.46 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCC-ccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~-~i~g~~i~v~~a 98 (189)
..+++|++++.+.+.++++..++.++|.+....+.....+..+++++++.|...+.+..++++... .+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 467999999999999999999999999877776666566788899999999999999999987554 555655555444
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.74 E-value=1.1 Score=31.36 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=45.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID 89 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~ 89 (189)
-+.+...|..++.++|..+.+.+- .|..++|++|. ...+-.+.++|.+.++|..-.+. |++.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334444455555667766666654 57788898874 34677899999999999999864 887654
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.69 E-value=0.15 Score=44.85 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=50.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCcc---C-CeeeEEEE
Q 029737 24 KVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVI---D-GRRANCNL 97 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i---~-g~~i~v~~ 97 (189)
++-|.|+|...|...|.+.-+ ..|.-..+.++.|-.+....|||||.|.+.+++..+.+. +++.+ . .+.+++.|
T Consensus 390 t~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itY 469 (549)
T KOG4660|consen 390 TLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITY 469 (549)
T ss_pred hhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeeh
Confidence 344444444433333332222 245666777888876777889999999999999999875 66543 3 45567777
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
|+.+
T Consensus 470 ArIQ 473 (549)
T KOG4660|consen 470 ARIQ 473 (549)
T ss_pred hhhh
Confidence 6643
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.79 E-value=1.1 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCCCcHHHHHHHHhhcC-----CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 31 AWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 31 p~~~te~~l~~~F~~~G-----~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
-..++..+|-.++.... .|-.|+|..+ |+||+-... .+..+++ +++..+.|+.+.|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34678889988887654 4557777543 899998754 6777776 5888999999999865
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.46 E-value=0.81 Score=35.15 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=41.9
Q ss_pred cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-C--CCccCCeeeEEEEcc
Q 029737 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-A--APVIDGRRANCNLAC 99 (189)
Q Consensus 35 te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~--~~~i~g~~i~v~~a~ 99 (189)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|... + ...+.+..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999998887766543 33678999999999999975 6 678999999998884
No 142
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.16 E-value=10 Score=34.65 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=46.2
Q ss_pred ccEEEEc-CCCCCCcHHHHHHHHhhcCC-----EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 22 YTKVFVG-GLAWETQKETMEKYFEQFGE-----ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 22 ~~~ifV~-nLp~~~te~~l~~~F~~~G~-----i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
..++||. +=...++..+|-.++..-+. |-.|+|..+ |.||+.... .+...++ ++...+.|+.|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceE
Confidence 3445554 23456888888888865443 335666433 899998654 4566665 577889999999
Q ss_pred EEEcc
Q 029737 95 CNLAC 99 (189)
Q Consensus 95 v~~a~ 99 (189)
|+.+.
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 99874
No 143
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=87.17 E-value=1.3 Score=28.28 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 37 ~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
++|++.|.+.| .+..+..+..+++..+...-||+.....+... .++-..|+++++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 57888899988 68899988888877777888998875533222 23445678888777655
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.62 E-value=5.3 Score=25.32 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeE
Q 029737 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRAN 94 (189)
Q Consensus 33 ~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~ 94 (189)
.++-++++..|.+|.- . +|..|+ || =||.|.+..+|+++.+. ++..+-...+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4677899999999963 3 344454 23 48999999999999975 66666555443
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.11 E-value=0.73 Score=42.79 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCc--cCCeeeEEEEcc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPV--IDGRRANCNLAC 99 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~--i~g~~i~v~~a~ 99 (189)
.+.++.|.+-..+...|-.+|++||.|.+.+.+++-. .|.|+|...+.|..|++. .+++ ..|-..+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455666677888889999999999999998877643 899999999999999974 6665 457778888886
Q ss_pred cCCCCCCC
Q 029737 100 LGVQRSKP 107 (189)
Q Consensus 100 ~~~~~~~~ 107 (189)
.-.....+
T Consensus 373 ~~~~~ep~ 380 (1007)
T KOG4574|consen 373 TLPMYEPP 380 (1007)
T ss_pred ccccccCC
Confidence 65444333
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.73 E-value=5.4 Score=34.69 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=54.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccC
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID 89 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~ 89 (189)
..+.|+|--+|-.++--||-.|...+- .|.+++|++|.. -.+-..+|.|.+.++|...-+. |+..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 377899999999999999999997654 588999999742 2456789999999999999864 877654
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=84.60 E-value=0.079 Score=44.81 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~ 89 (189)
++|+|.+|+..+...++.+.|..+|+|...++... -..-+|-|+|....+...|++.++.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 78999999999999999999999999887766433 2344677999998888888888776655
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=84.12 E-value=0.14 Score=43.79 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=61.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEE-EecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVV-ITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.++++-|.|+|+...++.|..++.+||.++.|.. ..+++|- ..-|+|...+.+..||. +++..+....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4578999999999999999999999999988854 4455433 23378889999999996 5888899998888876
Q ss_pred c
Q 029737 99 C 99 (189)
Q Consensus 99 ~ 99 (189)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 3
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.62 E-value=4.4 Score=34.76 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCC-EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
+..-.+-|-|-++|.....+||-..|+.|+. -.+|.|+.|. ++|-.|++...|..||.+
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3345678889999999999999999999974 3466777664 799999999999999976
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.27 E-value=2.6 Score=34.50 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCE-eEEEEEecCCCCCcccEEEEEECCH
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREP 74 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~tg~~~G~afV~F~~~ 74 (189)
.+-||++||+.++.-.||+..+.+-+.+ .++.+. -+++-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 3569999999999999999999887643 344442 2467899999765
No 151
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=81.82 E-value=4.1 Score=25.47 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCCEeEEEE
Q 029737 37 ETMEKYFEQFGEILEAVV 54 (189)
Q Consensus 37 ~~l~~~F~~~G~i~~v~i 54 (189)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865544
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=81.11 E-value=0.33 Score=38.17 Aligned_cols=67 Identities=27% Similarity=0.295 Sum_probs=56.2
Q ss_pred CCCCCCccEEEEcC----CCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 16 QFGDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 16 ~~~~~~~~~ifV~n----Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
-.++....+++.|+ |...++++.+.+.|+..+.+..+++.++.+ ++.+-+.|+++-...+.-.++..
T Consensus 74 l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 74 LEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred hccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 34555667889998 899999999999999999999999999886 88999999998777776666643
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.58 E-value=4.6 Score=25.73 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 37 ~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
++|++.|...| .|..|.-+..+.+....-.-||+++...+...+ ++-..|++..|+|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecC
Confidence 57888888888 688888777776777778889998765442222 2444678888888765
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.54 E-value=7.1 Score=27.60 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEEC-CHHHHHHHHHh
Q 029737 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (189)
Q Consensus 34 ~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~-~~~~a~~al~~ 83 (189)
.+.++|++.|+.|..++ ++.+.++. -+.|++.|+|. +..-...|+++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 35588999999998754 55555542 47899999997 56667777754
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.64 E-value=7.5 Score=31.97 Aligned_cols=84 Identities=10% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecC-------CCCCcccEEEEEECCHHHHHHHHH-----h--C
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-------ATGRSKGYGFVTFREPEAAMKACV-----D--A 84 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~tg~~~G~afV~F~~~~~a~~al~-----~--~ 84 (189)
+...++|.+.||..+++--.+-..|.+||.|++|.++.+. +..+......+.|-+.+.+...-. + -
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3466789999999999888888888999999999998775 112334678899998887765541 1 2
Q ss_pred CCccCCeeeEEEEcccCC
Q 029737 85 APVIDGRRANCNLACLGV 102 (189)
Q Consensus 85 ~~~i~g~~i~v~~a~~~~ 102 (189)
...+....+.|++.....
T Consensus 92 K~~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNY 109 (309)
T ss_pred HHhcCCcceeEEEEEEec
Confidence 334677788888876543
No 156
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.91 E-value=18 Score=32.56 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=58.7
Q ss_pred CCCccEEEEcCCCCC-CcHHHHHHHHhhc----CCEeEEEEEecC----------CCCC---------------------
Q 029737 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR--------------------- 62 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~----------~tg~--------------------- 62 (189)
....++|-|.|+.|+ +..++|.-+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 7889999999765 588888875421 0111
Q ss_pred ----------------cccEEEEEECCHHHHHHHHHh-CCCccCC--eeeEEEEcccCC
Q 029737 63 ----------------SKGYGFVTFREPEAAMKACVD-AAPVIDG--RRANCNLACLGV 102 (189)
Q Consensus 63 ----------------~~G~afV~F~~~~~a~~al~~-~~~~i~g--~~i~v~~a~~~~ 102 (189)
..-||.|+|.+.+.|.+.-+. ++.++.. ..+.+.+....+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 124899999999999888775 7777764 445555543333
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.85 E-value=10 Score=25.51 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.6
Q ss_pred EEEEECCHHHHHHHHHh--CCCccCCeeeEEEEc
Q 029737 67 GFVTFREPEAAMKACVD--AAPVIDGRRANCNLA 98 (189)
Q Consensus 67 afV~F~~~~~a~~al~~--~~~~i~g~~i~v~~a 98 (189)
|.|+|.+..-|++.++. +...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999999976 344567777766654
No 158
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=61.56 E-value=41 Score=22.33 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=40.2
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
-|+--++..++..+|++.+++ |+ .|.+|..+..+. ..--|||.+...++|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 445557889999999999987 66 577777665542 23369999998888777643
No 159
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.97 E-value=40 Score=22.00 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
+-|+-.++...+..+|++.++. |+ .|..|..+.-+. ..--|||.+...+.|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 3556667899999999999987 66 577776555442 2236999998877776654
No 160
>PF15063 TC1: Thyroid cancer protein 1
Probab=58.41 E-value=7.4 Score=25.31 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCE
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEI 49 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i 49 (189)
....+...++--+.||=.+++.++|+.+|..-|+.
T Consensus 18 g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 18 GYKFDTASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred CCCcchHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34455667788889999999999999999998864
No 161
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.97 E-value=14 Score=30.28 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCC------------CcHHHHHHHHhhcCCEeEEEEEe
Q 029737 22 YTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVIT 56 (189)
Q Consensus 22 ~~~ifV~nLp~~------------~te~~l~~~F~~~G~i~~v~i~~ 56 (189)
..+||+.+||-. .+|+-|+..|+.||+|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 357888888732 46788999999999999988754
No 162
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=55.24 E-value=15 Score=28.22 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=49.3
Q ss_pred CccEEEEcCCCCCCcH-----HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe-ee
Q 029737 21 TYTKVFVGGLAWETQK-----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-RA 93 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~-~i 93 (189)
-..++++.+++..+-. ...+.+|.+|-+....++++ +.++.-|.|.+.+.|.+|.. .+...|.++ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3456888888766532 23445566665544444433 34567799999999999985 477888888 77
Q ss_pred EEEEccc
Q 029737 94 NCNLACL 100 (189)
Q Consensus 94 ~v~~a~~ 100 (189)
+.-++.+
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7777743
No 163
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.20 E-value=18 Score=27.80 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTF 71 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F 71 (189)
.......+++.+++..+++.++...|..++.+....+...........+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 345667999999999999999999999999997777665543333333333333
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=50.06 E-value=16 Score=29.17 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v 52 (189)
.....+++|+-|+|..+|++.|.++.+++|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34456799999999999999999999998854433
No 165
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.98 E-value=1.1e+02 Score=22.76 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhc---CCEeEEEEEecCCC---------CCccc-EEEEEECCHHHH
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKAT---------GRSKG-YGFVTFREPEAA 77 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~t---------g~~~G-~afV~F~~~~~a 77 (189)
.+||+.-+...++|++.++..++- .++..|.+-+.+++ ...+. |-+|.|++-...
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 799999999999999999998754 56777777665432 11233 888888876543
No 166
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.77 E-value=43 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCc---HHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCee
Q 029737 24 KVFVGGLAWETQ---KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (189)
Q Consensus 24 ~ifV~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~ 92 (189)
-=+||||+.-.. ...+.++=++||.|-.+++-.. -.|.-++.+.|+.++..++..+.+|.
T Consensus 34 lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp 96 (489)
T KOG0156|consen 34 LPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRP 96 (489)
T ss_pred CCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCC
Confidence 346788865433 3556666678999998877332 36888999999999999888888884
No 167
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=43.96 E-value=80 Score=21.65 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHhh-cCCEeEEEEEecC----CCCCcccEEEEEECCHHHHHH
Q 029737 33 ETQKETMEKYFEQ-FGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 33 ~~te~~l~~~F~~-~G~i~~v~i~~~~----~tg~~~G~afV~F~~~~~a~~ 79 (189)
+.+..+|++-+.+ |+.=.+..++..- -.+++.|||.| |++.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 5678888887754 5532233233222 22566788875 677766654
No 168
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=42.63 E-value=1.1e+02 Score=21.78 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHhh-cCC---EeE-EEEEecCCCCCcccEEEEEECCHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FGE---ILE-AVVITDKATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G~---i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~ 79 (189)
.+++.+||++-+++ |-. ... ..+-.+--+|++.|||.| |++.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 36788999988865 432 222 233344456788899976 666666554
No 169
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=42.46 E-value=20 Score=19.83 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHhhcC
Q 029737 32 WETQKETMEKYFEQFG 47 (189)
Q Consensus 32 ~~~te~~l~~~F~~~G 47 (189)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788999999998754
No 170
>PHA01632 hypothetical protein
Probab=42.04 E-value=30 Score=21.10 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.8
Q ss_pred EcCCCCCCcHHHHHHHHhh
Q 029737 27 VGGLAWETQKETMEKYFEQ 45 (189)
Q Consensus 27 V~nLp~~~te~~l~~~F~~ 45 (189)
|..+|..-||++|+..+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 3578999999999988854
No 171
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=41.38 E-value=43 Score=25.72 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=36.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHh-hcCCEeEEEEEecCCC-CCcccEEEEEECCHHHHHHHHHhC
Q 029737 23 TKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDA 84 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~t-g~~~G~afV~F~~~~~a~~al~~~ 84 (189)
+++|.. .|+++|.++.. .-|.+..|..-+.... ...+|--||+|.+.+.+.+.++..
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 455554 45555555442 2267777766544321 256899999999999999988653
No 172
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.00 E-value=12 Score=32.23 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=48.1
Q ss_pred ccEEEEcCCCCCCcHH--------HHHHHHhh--cCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 22 YTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~--------~l~~~F~~--~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
.+.+|+.++....+.+ ++..+|.. .+.+..+...++.....++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567888777665555 89999988 5667777777776567788999999999999999984
No 173
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=40.04 E-value=63 Score=21.43 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.9
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (189)
+|++|+|..-...++.++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766668899999999976
No 174
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.99 E-value=86 Score=19.00 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCc
Q 029737 35 QKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (189)
Q Consensus 35 te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~ 87 (189)
.-.+|-++|.+.| .|.++.+....+ +++-.+.+++.+.+.++++.++.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCCE
Confidence 3477888888877 677876644322 466667788888888888766543
No 175
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.75 E-value=38 Score=27.83 Aligned_cols=32 Identities=22% Similarity=0.057 Sum_probs=22.7
Q ss_pred EEEEECCHHHHHHHHHh-CCCccCCeeeEEEEccc
Q 029737 67 GFVTFREPEAAMKACVD-AAPVIDGRRANCNLACL 100 (189)
Q Consensus 67 afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~a~~ 100 (189)
|||+|++..+|+.|++. .... .+.++|+.|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 79999999999999985 2222 24456766643
No 176
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.33 E-value=1.2e+02 Score=20.10 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 36 e~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
.+.++++++++| +++++.+.. |.---...+++.|.+.+.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHH
Confidence 466788888876 677777764 334568889999999888766
No 177
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=1.4e+02 Score=20.68 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
.+|.++++++| |..-.|..+.. ...-|+++++.|.+...++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 45677788887 56666666643 245699999997777666663
No 178
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=36.29 E-value=47 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHh
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFE 44 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~ 44 (189)
+.+.+.++++.|| |++|++.|+.
T Consensus 61 ekeg~~i~~g~lP---t~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLP---TDEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCC---ChHHHHHHHH
Confidence 5566889999998 6677887775
No 179
>PF14893 PNMA: PNMA
Probab=34.79 E-value=29 Score=29.19 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhh
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQ 45 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~ 45 (189)
...+.|.|.+||.+|++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34568999999999999999988853
No 180
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=34.47 E-value=79 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=20.0
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (189)
+|++|+|..-...++.++||=|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776654458889999999986
No 181
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=34.35 E-value=88 Score=21.15 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCcHHHHHHHH---hhcCCEeEEEEEe----cCCCCCcccEEEEEEC
Q 029737 24 KVFVGGLAWETQKETMEKYF---EQFGEILEAVVIT----DKATGRSKGYGFVTFR 72 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F---~~~G~i~~v~i~~----~~~tg~~~G~afV~F~ 72 (189)
..|+.+||.++.+.++...- ..+.. ++.|.. ......+.|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~--~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP--DVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS--EEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC--CeEEEEecccCccCCCCCceEEEEEE
Confidence 45889999999887765544 44443 444443 2344666777765543
No 182
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=33.64 E-value=56 Score=20.53 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEE
Q 029737 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (189)
Q Consensus 34 ~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV 69 (189)
.-|.+|+.+|-+--+|+++.|...+. ..+|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 34667888887878899998887653 33556665
No 183
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.61 E-value=47 Score=18.18 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHhhcCCE
Q 029737 33 ETQKETMEKYFEQFGEI 49 (189)
Q Consensus 33 ~~te~~l~~~F~~~G~i 49 (189)
.+++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999998853
No 184
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=32.56 E-value=1.3e+02 Score=20.08 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=29.1
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEE
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTF 71 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F 71 (189)
..-|||++++..+.|.-.+.+.+..++- ++.++.... . ..||.|-.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~-n-eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDN-N-EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccC-C-CCCEEEEEe
Confidence 3469999999888876666665544432 222222221 2 678998877
No 185
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=32.37 E-value=1.3e+02 Score=21.81 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHhh-cC-CEeEEEE----EecCCCCCcccEEEEEECCHHHHHH
Q 029737 33 ETQKETMEKYFEQ-FG-EILEAVV----ITDKATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 33 ~~te~~l~~~F~~-~G-~i~~v~i----~~~~~tg~~~G~afV~F~~~~~a~~ 79 (189)
+.+.+||++-+.+ |. .=.++.+ .+.--.+++.|||.| |++.+.+..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 6678899888865 55 1122222 222223567788875 666666544
No 186
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=32.10 E-value=18 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=19.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhh
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQ 45 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~ 45 (189)
..+++||||.+|..+-++.=..++..
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHH
Confidence 46789999999998877665555543
No 187
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.14 E-value=58 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=42.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCC-EeEEEEEecCCC--CCcccEEEEEECCHHHHHHHHHh-CCCc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACVD-AAPV 87 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~t--g~~~G~afV~F~~~~~a~~al~~-~~~~ 87 (189)
...+|.|.+||+..++.+|.+....+-. +....+.....+ ......+||.|...++....... +++.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 3468999999999999999888876542 223333221111 11257899999999885555442 5443
No 188
>CHL00030 rpl23 ribosomal protein L23
Probab=30.45 E-value=1.7e+02 Score=19.71 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=25.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEec
Q 029737 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITD 57 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~ 57 (189)
..|+--++.+++..+|++.++. |+ .|..|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4556667899999999999987 66 4677765544
No 189
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=29.38 E-value=1.6e+02 Score=18.96 Aligned_cols=60 Identities=8% Similarity=-0.004 Sum_probs=40.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-------cCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCC
Q 029737 25 VFVGGLAWETQKETMEKYFEQ-------FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~-------~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~ 86 (189)
|-..+||..+|.++|.+...+ +..|..++-..+.+ ..+-||+.+=.|.+.+.++-+..+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHHcCC
Confidence 456688888999998877643 33455554333322 2367888888899998888766543
No 190
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.17 E-value=2.2e+02 Score=20.96 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=35.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHH
Q 029737 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~ 79 (189)
.-|+--++...+..+|++.+++ |+ .|..|..+..+. + .--|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHH
Confidence 3455557889999999999987 66 466776554442 2 2269999976655433
No 191
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=27.68 E-value=25 Score=28.45 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=51.2
Q ss_pred CccEEEEcCCCCCCcHHH-H--HHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEE
Q 029737 21 TYTKVFVGGLAWETQKET-M--EKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANC 95 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~-l--~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v 95 (189)
.....|++++-..+..+- | ...|+.+-.+....++++.. +.-++++|+.|.......++-.. +.+++.-..|++
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 445677777766665544 3 77888888777788888765 66789999999887777777643 555555554433
No 192
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.02 E-value=1.3e+02 Score=19.59 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.3
Q ss_pred cccEEEEEECCHHHHHHHHHh
Q 029737 63 SKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 63 ~~G~afV~F~~~~~a~~al~~ 83 (189)
.+||-|||=.+.+++..|++-
T Consensus 43 lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT
T ss_pred CceEEEEEeCCHHHHHHHHhc
Confidence 689999999999999999964
No 193
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.96 E-value=9.3 Score=34.19 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=47.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP 86 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~ 86 (189)
...++||+.|++++++-++|+.+.+.+--+..+.+-.+....+...+..|+|+-.-....|+. +++.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 356789999999999999999999887666666554443334456678888875555555553 3443
No 194
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=26.96 E-value=1.3e+02 Score=25.61 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=4.1
Q ss_pred cEEEEcCCC
Q 029737 23 TKVFVGGLA 31 (189)
Q Consensus 23 ~~ifV~nLp 31 (189)
+++.|+.+|
T Consensus 295 ~k~~igrvP 303 (465)
T KOG3973|consen 295 HKLSIGRVP 303 (465)
T ss_pred cccccccCC
Confidence 344444443
No 195
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.61 E-value=9.9 Score=33.10 Aligned_cols=76 Identities=7% Similarity=-0.151 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
.+.|+..||...+++++.-+|..||.|..+.+-+.-..+..+-.+||+-.. +++..+|. +.+..+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999888776554445566678887654 45677774 46666777777777764
No 196
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.55 E-value=15 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=19.5
Q ss_pred cccEEEEEECC-HHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 63 SKGYGFVTFRE-PEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 63 ~~G~afV~F~~-~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
.+||+||..++ .++.--.-+....-++|-++.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 11111111223345778888888774
No 197
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.25 E-value=72 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=23.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEE
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v 52 (189)
.....|+|||+++|..-|..+++..-.+...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 3467899999999999999988654344333
No 198
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=25.61 E-value=1.3e+02 Score=21.07 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHHhhcCCEeEEEEE
Q 029737 31 AWETQKETMEKYFEQFGEILEAVVI 55 (189)
Q Consensus 31 p~~~te~~l~~~F~~~G~i~~v~i~ 55 (189)
...+|+++|++.|..|-.-.++.|+
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEE
Confidence 4589999999999998765555443
No 199
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=25.20 E-value=1.8e+02 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCC--CCCCCCC--CCCCCCCC
Q 029737 128 QNGGFGGTTFPS--TAAATFP--HYAIQQGT 154 (189)
Q Consensus 128 ~~gg~gg~~~~~--~~~~~~~--~~~~~~~~ 154 (189)
.+|||-+++.+. ...++|+ .|..+++|
T Consensus 263 ykgGfd~YRg~~~~~~ng~Y~Q~QF~a~RdY 293 (316)
T PF12287_consen 263 YKGGFDGYRGPFSNIPNGGYGQLQFQAPRDY 293 (316)
T ss_pred ccCCcccccCCcCCCCCCCcchhccCcccCC
Confidence 344555555432 2334454 44444555
No 200
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=24.74 E-value=1e+02 Score=26.85 Aligned_cols=7 Identities=0% Similarity=-0.125 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 029737 75 EAAMKAC 81 (189)
Q Consensus 75 ~~a~~al 81 (189)
+.++.+.
T Consensus 303 ~~l~~~F 309 (419)
T KOG0116|consen 303 AELEEVF 309 (419)
T ss_pred HHHHHHH
Confidence 3344433
No 201
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=23.47 E-value=2.6e+02 Score=19.46 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHhh-cCCEeEEEEEecC----CCCCcccEEEEEECCHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G~i~~v~i~~~~----~tg~~~G~afV~F~~~~~a~~ 79 (189)
.+.+..+|++.+.+ ++.=.++.++..- -.++++||+.| |+|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45678899888865 5532333333221 22567788865 667666544
No 202
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.20 E-value=1.4e+02 Score=17.23 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=21.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGE 48 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~ 48 (189)
..+||.+.....+.++|++++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 36778877767888999999999986
No 203
>PHA01782 hypothetical protein
Probab=22.93 E-value=1.1e+02 Score=23.10 Aligned_cols=54 Identities=15% Similarity=0.307 Sum_probs=34.3
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhC
Q 029737 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (189)
Q Consensus 27 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~ 84 (189)
+.-+|......-|.++|..||.|. +.+|+.+.+-.-|.|-.|. ..+.+.|....
T Consensus 60 ~~aMPKGsRrnAL~~wlv~~Gkv~---vntDkk~aKefpf~~nK~~-~tdLegA~~kp 113 (177)
T PHA01782 60 YEAMPKGSRRNALAEWLVKFGKVQ---VNTDKKSAKEFPFVYNKFG-KTDLEGATAKP 113 (177)
T ss_pred HHHccccchhhHHHHHHHHhCCcc---ccccccccccCceeecccc-chhhHhhhcCc
Confidence 345788888999999999999864 3455544444446665553 23344444433
No 204
>smart00457 MACPF membrane-attack complex / perforin.
Probab=22.89 E-value=76 Score=24.11 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=21.9
Q ss_pred cCCCCCCcHHHHHHHHhhcCC--EeEEEE
Q 029737 28 GGLAWETQKETMEKYFEQFGE--ILEAVV 54 (189)
Q Consensus 28 ~nLp~~~te~~l~~~F~~~G~--i~~v~i 54 (189)
..||...+..+...||..||. |.++.+
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 478888899999999999995 555554
No 205
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.69 E-value=1.3e+02 Score=20.18 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=20.8
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECCH
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFREP 74 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~~ 74 (189)
+|++|+|.+-...|+.+.|+-|+|++.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 477888877665688888999998753
No 206
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.64 E-value=1.2e+02 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHh
Q 029737 22 YTKVFVGGLAWETQKETMEKYFE 44 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~ 44 (189)
..-++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45789999999999999999986
No 207
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=21.17 E-value=71 Score=24.14 Aligned_cols=22 Identities=18% Similarity=0.558 Sum_probs=15.4
Q ss_pred EcCCCCCCcHHH---HHHHHhhcCC
Q 029737 27 VGGLAWETQKET---MEKYFEQFGE 48 (189)
Q Consensus 27 V~nLp~~~te~~---l~~~F~~~G~ 48 (189)
|..||...+..+ +.+||..||.
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGT 77 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGT 77 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-S
T ss_pred HHhhCcccCccchHHHHHHHHHhCc
Confidence 457888887777 7889999996
No 208
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=21.09 E-value=2.4e+02 Score=18.16 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=35.0
Q ss_pred EEEcCCCCCCcHHHHHHHH-------hhcCCEeEEEEEecCCCCC-ccc--E-EEEEECCHHHHHHHH
Q 029737 25 VFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGR-SKG--Y-GFVTFREPEAAMKAC 81 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F-------~~~G~i~~v~i~~~~~tg~-~~G--~-afV~F~~~~~a~~al 81 (189)
|.+-.|.+.++++++++++ .+...|+++.+-++-.... .++ + -+++|++.++.+.-.
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 3444577788888876554 3455678887766532221 233 3 347899988876655
No 209
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=20.98 E-value=2.8e+02 Score=18.90 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
.+|.+.+...| |.+..|.++..+ ..-|++++..+.+...+++.
T Consensus 26 PEv~~~l~~~G-i~~ysIf~~g~~--~~LF~~~E~~~~~~~~~~l~ 68 (106)
T PF05336_consen 26 PEVLAALREAG-IRNYSIFRDGDT--GRLFMYMETDDFDADMAALA 68 (106)
T ss_dssp HHHHHHHHHCT-EEEEEEEEETTT--TEEEEEEEECT-CHHHHHGG
T ss_pred HHHHHHHHHCC-CeEEEEEEeCCC--CEEEEEEEecChhhHHHHcc
Confidence 45666777776 778888877543 36699999998444555543
No 210
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.35 E-value=66 Score=20.24 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.4
Q ss_pred EEEEEECCHHHHHHHHH
Q 029737 66 YGFVTFREPEAAMKACV 82 (189)
Q Consensus 66 ~afV~F~~~~~a~~al~ 82 (189)
.+|..|++.++|..++.
T Consensus 46 ~aF~pF~s~~~ALe~~~ 62 (67)
T PF08156_consen 46 KAFSPFKSAEEALENAN 62 (67)
T ss_pred hhccCCCCHHHHHHHHH
Confidence 68999999998887764
Done!