Query 029737
Match_columns 189
No_of_seqs 231 out of 1908
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.4E-23 1.5E-27 153.0 13.0 82 20-101 37-119 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-23 1.3E-27 142.6 11.5 81 20-100 17-98 (99)
3 2dgs_A DAZ-associated protein 99.9 3E-22 1E-26 137.5 13.3 87 16-102 4-90 (99)
4 2cqd_A RNA-binding region cont 99.9 1E-21 3.5E-26 138.6 14.6 87 15-101 10-96 (116)
5 3s8s_A Histone-lysine N-methyl 99.9 5E-22 1.7E-26 139.5 11.8 82 19-100 3-85 (110)
6 1u6f_A Tcubp1, RNA-binding pro 99.9 1.2E-21 4E-26 142.5 13.6 85 17-101 37-122 (139)
7 2cpz_A CUG triplet repeat RNA- 99.9 7.1E-22 2.4E-26 139.3 12.0 89 14-102 17-106 (115)
8 1whw_A Hypothetical protein ri 99.9 1.6E-21 5.3E-26 133.8 12.7 86 18-103 4-90 (99)
9 3s7r_A Heterogeneous nuclear r 99.9 7.6E-22 2.6E-26 132.3 10.8 82 17-98 6-87 (87)
10 2lxi_A RNA-binding protein 10; 99.9 1.1E-22 3.9E-27 138.0 6.5 81 22-102 1-84 (91)
11 2fy1_A RNA-binding motif prote 99.9 2.5E-21 8.6E-26 137.0 13.6 83 18-101 3-86 (116)
12 2dnm_A SRP46 splicing factor; 99.9 1.2E-21 3.9E-26 135.5 11.0 87 15-101 6-93 (103)
13 2dng_A Eukaryotic translation 99.9 2.4E-21 8.2E-26 133.9 12.6 85 16-101 9-93 (103)
14 2dgo_A Cytotoxic granule-assoc 99.9 7.2E-21 2.5E-25 134.0 15.3 90 15-104 8-98 (115)
15 2cqg_A TDP-43, TAR DNA-binding 99.9 2.7E-21 9.2E-26 133.6 12.8 88 15-103 8-95 (103)
16 2lkz_A RNA-binding protein 5; 99.9 2.7E-22 9.2E-27 137.3 7.3 83 17-99 4-93 (95)
17 2dnz_A Probable RNA-binding pr 99.9 4.4E-21 1.5E-25 130.5 13.0 81 20-100 3-84 (95)
18 1wi8_A EIF-4B, eukaryotic tran 99.9 2.4E-21 8.2E-26 134.2 11.8 85 16-101 9-94 (104)
19 1x5s_A Cold-inducible RNA-bind 99.9 2.9E-21 9.9E-26 133.2 12.1 85 17-101 7-92 (102)
20 2cq0_A Eukaryotic translation 99.9 2.6E-21 8.8E-26 133.7 11.9 86 16-101 9-95 (103)
21 2dh8_A DAZ-associated protein 99.9 1E-21 3.4E-26 136.3 9.7 88 15-102 9-96 (105)
22 3q2s_C Cleavage and polyadenyl 99.9 3.3E-22 1.1E-26 157.5 8.0 81 21-101 67-150 (229)
23 1x5u_A Splicing factor 3B subu 99.9 4.6E-21 1.6E-25 132.8 12.8 86 16-101 9-95 (105)
24 2khc_A Testis-specific RNP-typ 99.9 1E-21 3.6E-26 138.9 9.7 86 14-99 32-118 (118)
25 1x4h_A RNA-binding protein 28; 99.9 4E-21 1.4E-25 134.3 12.3 87 17-103 10-103 (111)
26 2dhg_A TRNA selenocysteine ass 99.9 3.9E-21 1.3E-25 132.9 12.0 87 16-103 3-92 (104)
27 3ex7_B RNA-binding protein 8A; 99.9 2.7E-21 9.2E-26 138.3 11.4 87 17-103 17-104 (126)
28 1x5t_A Splicing factor 3B subu 99.9 2.6E-21 8.8E-26 131.9 10.8 82 20-101 3-86 (96)
29 2dgp_A Bruno-like 4, RNA bindi 99.9 3.7E-21 1.3E-25 133.5 11.6 87 15-101 6-96 (106)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.2E-21 7.5E-26 133.8 10.1 85 18-102 8-93 (102)
31 2cph_A RNA binding motif prote 99.9 6.1E-21 2.1E-25 132.5 12.5 87 16-102 9-98 (107)
32 2rs2_A Musashi-1, RNA-binding 99.9 2.6E-21 9.1E-26 135.4 10.5 86 18-103 21-106 (109)
33 1x4b_A Heterogeneous nuclear r 99.9 1.2E-21 4.1E-26 138.3 8.5 83 19-101 24-106 (116)
34 3bs9_A Nucleolysin TIA-1 isofo 99.9 5E-21 1.7E-25 128.1 11.1 82 20-101 4-86 (87)
35 1wez_A HnRNP H', FTP-3, hetero 99.9 2.4E-21 8.4E-26 134.1 9.8 80 17-98 10-89 (102)
36 3md1_A Nuclear and cytoplasmic 99.9 7.6E-21 2.6E-25 126.1 11.5 79 23-101 2-81 (83)
37 2cq4_A RNA binding motif prote 99.9 6.5E-22 2.2E-26 139.3 6.3 87 17-103 20-106 (114)
38 2e5h_A Zinc finger CCHC-type a 99.9 5.6E-21 1.9E-25 129.7 10.6 85 15-99 9-94 (94)
39 2d9p_A Polyadenylate-binding p 99.9 1.2E-20 3.9E-25 130.4 12.2 86 15-102 8-94 (103)
40 2cqc_A Arginine/serine-rich sp 99.9 7.8E-21 2.7E-25 129.2 11.2 85 15-99 8-93 (95)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.2E-21 2.1E-25 127.1 10.5 81 19-99 4-85 (85)
42 1s79_A Lupus LA protein; RRM, 99.8 4.5E-21 1.5E-25 133.1 10.1 82 18-100 7-88 (103)
43 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-20 5.4E-25 130.1 12.9 85 18-103 11-99 (105)
44 2cpf_A RNA binding motif prote 99.8 7.8E-21 2.7E-25 130.1 11.1 82 20-101 3-88 (98)
45 1p27_B RNA-binding protein 8A; 99.8 1.1E-20 3.8E-25 131.1 12.0 84 18-101 19-103 (106)
46 3p5t_L Cleavage and polyadenyl 99.8 1.2E-21 4E-26 132.5 6.2 80 23-102 2-84 (90)
47 2ywk_A Putative RNA-binding pr 99.8 8.8E-21 3E-25 129.0 10.6 85 14-99 8-93 (95)
48 2do4_A Squamous cell carcinoma 99.8 1.5E-20 5.2E-25 129.1 11.9 83 18-101 13-96 (100)
49 2jrs_A RNA-binding protein 39; 99.8 1E-20 3.4E-25 132.3 11.1 88 14-101 18-106 (108)
50 2m2b_A RNA-binding protein 10; 99.8 2.1E-21 7.2E-26 140.1 7.9 89 12-101 13-108 (131)
51 4f25_A Polyadenylate-binding p 99.8 8.3E-21 2.8E-25 134.1 10.8 79 21-101 4-83 (115)
52 3ucg_A Polyadenylate-binding p 99.8 9.7E-21 3.3E-25 127.2 10.7 80 21-100 5-84 (89)
53 2cpe_A RNA-binding protein EWS 99.8 9.4E-21 3.2E-25 133.0 11.0 85 17-101 10-103 (113)
54 2do0_A HnRNP M, heterogeneous 99.8 6.1E-20 2.1E-24 128.9 14.9 84 17-101 10-94 (114)
55 2div_A TRNA selenocysteine ass 99.8 1.4E-20 4.8E-25 129.0 11.2 83 18-100 5-93 (99)
56 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-20 1.2E-24 128.0 13.3 85 16-102 9-94 (103)
57 3ns6_A Eukaryotic translation 99.8 2.9E-21 1E-25 133.1 7.8 83 19-101 3-93 (100)
58 2la6_A RNA-binding protein FUS 99.8 1.5E-20 5.2E-25 129.0 11.3 83 16-98 7-98 (99)
59 2mss_A Protein (musashi1); RNA 99.8 2.9E-21 9.8E-26 125.9 7.1 75 24-98 1-75 (75)
60 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-20 5.9E-25 131.0 11.4 86 17-102 21-107 (110)
61 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.5E-21 8.6E-26 133.3 7.0 85 16-101 13-98 (100)
62 2x1f_A MRNA 3'-END-processing 99.8 1.6E-20 5.4E-25 128.2 10.9 81 21-101 1-82 (96)
63 2cq3_A RNA-binding protein 9; 99.8 5.5E-20 1.9E-24 127.0 13.7 87 15-103 8-95 (103)
64 2dgw_A Probable RNA-binding pr 99.8 1.8E-20 6.2E-25 126.6 11.0 84 16-101 4-87 (91)
65 1wg5_A Heterogeneous nuclear r 99.8 2E-20 6.7E-25 129.8 11.4 83 17-100 10-93 (104)
66 3n9u_C Cleavage and polyadenyl 99.8 1.2E-20 4E-25 140.3 10.8 80 21-100 54-136 (156)
67 2jwn_A Embryonic polyadenylate 99.8 2E-20 6.9E-25 133.4 11.2 80 21-100 35-114 (124)
68 1x4a_A Splicing factor, argini 99.8 6E-20 2.1E-24 128.1 13.2 83 15-100 15-98 (109)
69 2cpy_A RNA-binding protein 12; 99.8 2.2E-21 7.6E-26 136.7 5.8 84 18-102 11-95 (114)
70 2kxn_B Transformer-2 protein h 99.8 1.6E-20 5.4E-25 135.4 10.0 86 16-101 40-126 (129)
71 1iqt_A AUF1, heterogeneous nuc 99.8 5.2E-21 1.8E-25 124.6 5.9 75 24-98 1-75 (75)
72 1p1t_A Cleavage stimulation fa 99.8 9.4E-21 3.2E-25 130.9 7.5 85 18-102 4-89 (104)
73 3pgw_S U1-70K; protein-RNA com 99.8 9.2E-20 3.2E-24 155.8 15.2 84 20-103 100-184 (437)
74 3ulh_A THO complex subunit 4; 99.8 6.5E-20 2.2E-24 127.4 11.7 83 16-99 23-106 (107)
75 2dgu_A Heterogeneous nuclear r 99.8 1.4E-19 4.8E-24 125.1 13.3 81 17-105 6-87 (103)
76 2dgv_A HnRNP M, heterogeneous 99.8 7.5E-20 2.6E-24 123.6 11.6 83 17-101 3-86 (92)
77 4a8x_A RNA-binding protein wit 99.8 3.4E-20 1.2E-24 124.2 9.8 80 21-100 3-84 (88)
78 2hgn_A Heterogeneous nuclear r 99.8 2.6E-21 8.9E-26 141.2 4.5 80 18-99 42-121 (139)
79 1x4c_A Splicing factor, argini 99.8 1.5E-19 5.1E-24 126.1 13.1 79 16-101 9-93 (108)
80 2cqp_A RNA-binding protein 12; 99.8 2.1E-20 7.2E-25 127.9 8.6 82 18-99 11-93 (98)
81 2dgx_A KIAA0430 protein; RRM d 99.8 7.3E-20 2.5E-24 125.1 11.2 79 20-101 7-90 (96)
82 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-20 4E-25 123.5 6.6 76 23-98 1-76 (77)
83 2dis_A Unnamed protein product 99.8 1.4E-19 4.8E-24 126.1 12.5 84 20-103 6-94 (109)
84 2dnn_A RNA-binding protein 12; 99.8 1.8E-20 6E-25 131.4 7.8 80 19-100 13-92 (109)
85 2db1_A Heterogeneous nuclear r 99.8 2.4E-20 8.1E-25 132.4 8.4 84 17-101 12-98 (118)
86 2ek1_A RNA-binding protein 12; 99.8 1.6E-20 5.3E-25 127.8 7.1 82 18-99 11-93 (95)
87 2kn4_A Immunoglobulin G-bindin 99.8 9.2E-20 3.1E-24 135.1 11.9 84 18-101 66-150 (158)
88 1sjq_A Polypyrimidine tract-bi 99.8 5E-20 1.7E-24 128.0 9.7 78 18-101 12-92 (105)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.4E-20 2.2E-24 133.0 10.7 83 16-98 57-140 (140)
90 2lea_A Serine/arginine-rich sp 99.8 2.6E-20 9E-25 135.2 8.6 85 17-101 42-127 (135)
91 2kt5_A RNA and export factor-b 99.8 1.5E-19 5.1E-24 129.0 12.2 85 18-103 31-116 (124)
92 2hgl_A HNRPF protein, heteroge 99.8 2E-20 6.9E-25 136.0 7.5 83 17-100 39-124 (136)
93 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-19 5.5E-24 135.1 12.0 86 18-103 68-154 (165)
94 2hgm_A HNRPF protein, heteroge 99.8 3E-20 1E-24 133.3 7.5 82 17-100 37-120 (126)
95 2xs2_A Deleted in azoospermia- 99.8 3.8E-20 1.3E-24 127.6 7.6 84 18-103 5-88 (102)
96 2err_A Ataxin-2-binding protei 99.8 8.6E-20 3E-24 127.6 9.3 87 13-101 20-107 (109)
97 1wel_A RNA-binding protein 12; 99.8 1.7E-20 5.8E-25 134.0 5.5 84 18-101 21-104 (124)
98 1x5o_A RNA binding motif, sing 99.8 2.7E-19 9.2E-24 125.7 11.4 82 17-99 20-110 (114)
99 2fc9_A NCL protein; structure 99.8 1.9E-19 6.4E-24 123.8 10.3 81 17-101 10-91 (101)
100 1x4e_A RNA binding motif, sing 99.8 1.9E-20 6.4E-25 124.9 5.0 79 20-98 3-82 (85)
101 2cq1_A PTB-like protein L; RRM 99.8 4.3E-19 1.5E-23 122.6 12.0 81 16-102 9-92 (101)
102 2fc8_A NCL protein; structure 99.8 2.7E-19 9.2E-24 123.2 11.0 81 17-100 10-91 (102)
103 2dnq_A RNA-binding protein 4B; 99.8 6.1E-19 2.1E-23 118.9 12.3 76 18-101 4-80 (90)
104 2cpx_A Hypothetical protein FL 99.8 5.7E-20 1.9E-24 129.3 7.3 85 18-102 21-106 (115)
105 2lmi_A GRSF-1, G-rich sequence 99.8 2.8E-20 9.6E-25 129.6 5.6 84 17-101 6-92 (107)
106 1x4d_A Matrin 3; structural ge 99.8 1.9E-19 6.7E-24 124.5 9.7 78 18-101 11-92 (102)
107 2ki2_A SS-DNA binding protein 99.8 2.5E-20 8.7E-25 125.5 5.0 79 23-102 2-81 (90)
108 2dha_A FLJ20171 protein; RRM d 99.8 4.4E-20 1.5E-24 132.0 6.5 81 19-100 20-104 (123)
109 1wex_A Hypothetical protein (r 99.8 9.5E-19 3.2E-23 121.5 13.1 79 17-101 10-91 (104)
110 2e5g_A U6 snRNA-specific termi 99.8 5E-19 1.7E-23 120.3 11.2 78 19-101 5-82 (94)
111 1fj7_A Nucleolin RBD1, protein 99.8 1.7E-20 5.7E-25 129.2 3.8 82 19-101 14-95 (101)
112 2lcw_A RNA-binding protein FUS 99.7 3.1E-21 1.1E-25 136.2 0.0 84 18-101 3-95 (116)
113 2cpi_A CCR4-NOT transcription 99.8 2.6E-19 9E-24 125.5 9.6 85 18-102 11-102 (111)
114 1x4f_A Matrin 3; structural ge 99.8 4.1E-19 1.4E-23 124.8 9.9 82 14-101 17-102 (112)
115 2ad9_A Polypyrimidine tract-bi 99.8 6.6E-19 2.3E-23 125.0 10.8 80 17-102 26-108 (119)
116 2dgt_A RNA-binding protein 30; 99.8 1.4E-18 4.6E-23 117.6 11.9 79 15-101 3-82 (92)
117 1l3k_A Heterogeneous nuclear r 99.8 6.5E-19 2.2E-23 133.9 11.5 86 16-101 7-92 (196)
118 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-18 4E-23 121.6 11.8 80 18-103 21-101 (109)
119 2nlw_A Eukaryotic translation 99.8 4E-19 1.4E-23 123.3 9.3 81 18-100 11-99 (105)
120 1l3k_A Heterogeneous nuclear r 99.8 6.4E-19 2.2E-23 133.9 11.1 85 20-104 102-186 (196)
121 2jvo_A Nucleolar protein 3; nu 99.8 5.4E-19 1.8E-23 123.5 9.7 81 13-101 22-103 (108)
122 2ytc_A PRE-mRNA-splicing facto 99.8 1.2E-18 4E-23 116.0 10.7 78 15-98 5-84 (85)
123 2hvz_A Splicing factor, argini 99.8 1.1E-18 3.7E-23 120.0 10.7 75 23-102 1-76 (101)
124 3r27_A HnRNP L, heterogeneous 99.8 9.9E-19 3.4E-23 120.3 10.3 77 18-100 17-96 (100)
125 2wbr_A GW182, gawky, LD47780P; 99.8 5.5E-19 1.9E-23 118.2 8.7 72 22-99 7-79 (89)
126 2a3j_A U1 small nuclear ribonu 99.8 1.2E-18 4.1E-23 125.2 10.8 82 17-101 24-110 (127)
127 1why_A Hypothetical protein ri 99.8 1.8E-18 6E-23 118.2 11.0 77 19-101 14-93 (97)
128 2krb_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 118.0 7.1 72 22-95 1-80 (81)
129 2dnp_A RNA-binding protein 14; 99.8 2.4E-18 8.4E-23 115.9 11.5 77 17-101 4-81 (90)
130 3beg_B Splicing factor, argini 99.8 2.6E-19 9E-24 126.3 6.8 73 19-98 13-91 (115)
131 2cqh_A IGF-II mRNA-binding pro 99.8 9.3E-19 3.2E-23 118.6 9.1 77 18-101 4-83 (93)
132 2la4_A Nuclear and cytoplasmic 99.8 5.8E-19 2E-23 121.4 8.1 77 18-100 23-100 (101)
133 4f02_A Polyadenylate-binding p 99.8 1.6E-18 5.5E-23 134.4 11.5 81 20-100 13-94 (213)
134 2cpd_A Apobec-1 stimulating pr 99.8 4.1E-18 1.4E-22 116.8 12.1 76 18-101 11-89 (99)
135 2jvr_A Nucleolar protein 3; RN 99.8 7.4E-19 2.5E-23 123.4 8.2 77 19-99 25-103 (111)
136 2f3j_A RNA and export factor b 99.8 1.8E-18 6.1E-23 131.0 10.8 84 18-102 84-168 (177)
137 2cpj_A Non-POU domain-containi 99.8 2.8E-18 9.6E-23 117.6 10.7 78 18-101 11-89 (99)
138 2kvi_A Nuclear polyadenylated 99.8 1.3E-18 4.5E-23 118.7 8.9 76 18-101 6-83 (96)
139 1wf1_A RNA-binding protein RAL 99.8 3.3E-18 1.1E-22 119.5 11.1 72 20-99 25-98 (110)
140 2e5j_A Methenyltetrahydrofolat 99.8 2.4E-18 8.3E-23 117.5 10.1 79 18-101 15-94 (97)
141 3lqv_A PRE-mRNA branch site pr 99.8 2.6E-18 8.9E-23 120.8 10.3 81 19-102 5-86 (115)
142 1nu4_A U1A RNA binding domain; 99.8 1.8E-18 6.2E-23 117.9 8.0 81 18-101 4-89 (97)
143 2xnq_A Nuclear polyadenylated 99.8 7.8E-18 2.7E-22 115.3 11.1 76 17-100 17-94 (97)
144 3d2w_A TAR DNA-binding protein 99.8 1.8E-18 6.1E-23 116.7 7.8 79 18-102 7-85 (89)
145 1whx_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 119.9 9.2 78 19-102 7-85 (111)
146 1fjc_A Nucleolin RBD2, protein 99.8 1.7E-18 5.7E-23 117.9 7.3 80 17-101 11-91 (96)
147 2j8a_A Histone-lysine N-methyl 99.8 1.7E-18 5.8E-23 123.4 7.5 77 23-99 3-94 (136)
148 3md3_A Nuclear and cytoplasmic 99.7 1.4E-17 4.7E-22 122.9 12.3 82 18-99 83-165 (166)
149 1fxl_A Paraneoplastic encephal 99.7 1.2E-17 4.1E-22 123.3 11.9 80 22-101 2-82 (167)
150 2qfj_A FBP-interacting repress 99.7 1.2E-17 4.2E-22 128.6 12.4 82 20-101 123-205 (216)
151 2i2y_A Fusion protein consists 99.7 6.5E-18 2.2E-22 124.2 10.3 80 17-101 68-148 (150)
152 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-18 5.5E-23 116.3 6.4 76 20-101 3-78 (88)
153 2dnl_A Cytoplasmic polyadenyla 99.7 2.5E-18 8.4E-23 121.0 7.5 79 18-98 4-85 (114)
154 2cjk_A Nuclear polyadenylated 99.7 2E-18 6.8E-23 128.0 7.4 81 21-101 86-166 (167)
155 1b7f_A Protein (SXL-lethal pro 99.7 1E-17 3.5E-22 124.1 11.1 81 21-101 2-83 (168)
156 1sjr_A Polypyrimidine tract-bi 99.7 2E-17 6.8E-22 123.3 12.4 81 17-101 41-124 (164)
157 2e44_A Insulin-like growth fac 99.7 8.7E-18 3E-22 114.3 9.2 80 18-101 11-92 (96)
158 1x5p_A Negative elongation fac 99.7 3.8E-17 1.3E-21 111.5 12.4 76 18-101 11-87 (97)
159 2yh0_A Splicing factor U2AF 65 99.7 1.8E-17 6.1E-22 126.1 11.9 83 19-101 111-194 (198)
160 3egn_A RNA-binding protein 40; 99.7 1E-18 3.5E-23 127.6 4.6 83 19-104 42-133 (143)
161 2g4b_A Splicing factor U2AF 65 99.7 2.7E-17 9.2E-22 122.4 11.1 79 20-98 92-171 (172)
162 1wg1_A KIAA1579 protein, homol 99.7 9.9E-18 3.4E-22 112.5 7.8 75 20-101 3-78 (88)
163 2voo_A Lupus LA protein; RNA-b 99.7 2.9E-17 9.8E-22 126.0 11.1 80 21-101 108-187 (193)
164 2cjk_A Nuclear polyadenylated 99.7 1.1E-17 3.8E-22 123.9 8.4 79 21-100 2-80 (167)
165 2hzc_A Splicing factor U2AF 65 99.7 2.3E-17 7.9E-22 110.0 9.1 72 20-97 4-86 (87)
166 2cq2_A Hypothetical protein LO 99.7 3.2E-17 1.1E-21 115.3 9.7 78 16-99 19-104 (114)
167 3zzy_A Polypyrimidine tract-bi 99.7 5.8E-17 2E-21 116.5 10.8 84 13-101 19-106 (130)
168 2qfj_A FBP-interacting repress 99.7 3.1E-17 1.1E-21 126.3 10.0 81 20-100 26-107 (216)
169 1b7f_A Protein (SXL-lethal pro 99.7 1.2E-16 4.2E-21 118.2 11.9 80 19-98 86-168 (168)
170 4f02_A Polyadenylate-binding p 99.7 5.4E-17 1.8E-21 125.8 10.2 80 21-102 102-182 (213)
171 3md3_A Nuclear and cytoplasmic 99.7 9.1E-17 3.1E-21 118.5 10.7 78 23-101 1-79 (166)
172 1fxl_A Paraneoplastic encephal 99.7 1.9E-16 6.7E-21 116.8 11.2 79 20-98 86-167 (167)
173 2diu_A KIAA0430 protein; struc 99.7 3.6E-16 1.2E-20 105.6 11.2 74 21-104 7-87 (96)
174 2e5i_A Heterogeneous nuclear r 99.7 3E-16 1E-20 112.1 11.5 77 19-101 22-102 (124)
175 3nmr_A Cugbp ELAV-like family 99.7 2.1E-16 7.1E-21 117.6 11.0 81 21-101 2-88 (175)
176 2bz2_A Negative elongation fac 99.7 1.5E-16 5.1E-21 113.2 9.3 77 18-102 35-112 (121)
177 3nmr_A Cugbp ELAV-like family 99.7 3.4E-16 1.2E-20 116.5 10.9 79 19-98 92-174 (175)
178 3pgw_A U1-A; protein-RNA compl 99.7 3.6E-16 1.2E-20 125.5 11.3 83 17-102 4-91 (282)
179 3tyt_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 120.9 10.0 76 21-101 3-80 (205)
180 1fje_B Nucleolin RBD12, protei 99.6 5E-16 1.7E-20 116.0 9.1 79 18-101 95-174 (175)
181 2pe8_A Splicing factor 45; RRM 99.6 1.6E-15 5.6E-20 105.3 11.0 81 20-100 6-93 (105)
182 2ghp_A U4/U6 snRNA-associated 99.6 4.6E-16 1.6E-20 125.5 9.1 83 19-101 207-291 (292)
183 1fje_B Nucleolin RBD12, protei 99.6 6.4E-17 2.2E-21 120.9 3.5 83 18-101 9-91 (175)
184 3smz_A Protein raver-1, ribonu 99.6 3.5E-15 1.2E-19 119.8 12.9 82 21-102 94-176 (284)
185 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.8E-20 120.5 9.6 79 18-102 130-230 (240)
186 3pgw_A U1-A; protein-RNA compl 99.6 3.5E-15 1.2E-19 119.7 11.9 77 18-99 203-281 (282)
187 2adc_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 119.0 9.3 77 20-101 32-110 (229)
188 3smz_A Protein raver-1, ribonu 99.6 2.2E-15 7.4E-20 121.1 10.0 84 18-102 180-265 (284)
189 2ghp_A U4/U6 snRNA-associated 99.6 3.6E-15 1.2E-19 120.2 9.8 81 17-99 36-116 (292)
190 2g4b_A Splicing factor U2AF 65 99.6 6.8E-15 2.3E-19 109.3 9.8 73 21-99 3-86 (172)
191 2dit_A HIV TAT specific factor 99.6 2.8E-14 9.4E-19 99.9 12.3 81 18-102 11-103 (112)
192 1qm9_A Polypyrimidine tract-bi 99.6 2.2E-15 7.4E-20 114.9 7.1 76 21-101 2-79 (198)
193 2d9o_A DNAJ (HSP40) homolog, s 99.6 5E-14 1.7E-18 96.9 13.0 78 19-102 7-91 (100)
194 2yh0_A Splicing factor U2AF 65 99.6 9.3E-15 3.2E-19 110.9 8.9 75 21-101 3-88 (198)
195 3sde_A Paraspeckle component 1 99.6 1.4E-14 4.6E-19 115.6 9.8 80 21-101 95-179 (261)
196 2adc_A Polypyrimidine tract-bi 99.5 2.4E-14 8.1E-19 112.0 10.4 76 21-101 150-228 (229)
197 3tyt_A Heterogeneous nuclear r 99.5 7.9E-15 2.7E-19 113.3 7.5 76 21-98 122-204 (205)
198 1qm9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.4E-19 110.5 8.6 77 20-101 118-197 (198)
199 3sde_A Paraspeckle component 1 99.5 2.1E-14 7.2E-19 114.5 9.8 76 19-100 19-95 (261)
200 3v4m_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 98.4 9.2 81 20-100 3-96 (105)
201 1jmt_A Splicing factor U2AF 35 99.5 7.6E-15 2.6E-19 101.7 4.9 71 27-98 20-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.4E-13 4.6E-18 97.5 9.3 80 21-100 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 3.7E-13 1.3E-17 111.3 9.2 77 16-98 12-96 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.4E-16 86.2 9.1 77 20-100 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 2.4E-11 8.2E-16 85.9 9.0 76 18-99 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 3E-11 1E-15 80.7 8.1 73 21-101 6-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.7E-10 5.7E-15 77.6 4.7 71 21-99 14-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 2.4E-09 8.2E-14 83.0 8.8 67 33-99 140-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 3.7E-07 1.3E-11 62.6 8.9 73 19-97 18-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.3 2.1E-05 7.3E-10 53.3 11.2 72 19-98 5-81 (104)
211 1whv_A Poly(A)-specific ribonu 97.8 0.00011 3.6E-09 49.4 7.2 55 20-83 14-68 (100)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5E-09 48.4 7.7 67 23-89 2-71 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.6 0.0005 1.7E-08 47.9 9.3 72 20-98 22-94 (119)
214 1wey_A Calcipressin 1; structu 97.6 0.00032 1.1E-08 47.7 7.6 74 21-100 4-83 (104)
215 3ctr_A Poly(A)-specific ribonu 97.5 0.00016 5.6E-09 48.6 4.8 52 23-83 7-58 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.9 0.00056 1.9E-08 58.4 3.3 57 22-84 53-109 (464)
217 2l08_A Regulator of nonsense t 96.8 0.00098 3.3E-08 44.7 3.5 68 21-88 8-78 (97)
218 3p3d_A Nucleoporin 53; structu 96.6 0.0027 9.3E-08 44.8 5.0 77 22-99 7-97 (132)
219 2kn4_A Immunoglobulin G-bindin 95.5 0.015 5E-07 41.8 4.4 31 51-83 2-32 (158)
220 2i2y_A Fusion protein consists 92.7 0.061 2.1E-06 38.2 2.5 39 61-100 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 92.7 0.33 1.1E-05 41.9 7.5 54 21-83 439-492 (507)
222 4f25_A Polyadenylate-binding p 82.0 0.17 5.7E-06 34.3 -1.1 19 20-38 95-113 (115)
223 2cu1_A Mitogen-activated prote 68.8 11 0.00039 24.9 5.1 63 29-99 23-86 (103)
224 2g0c_A ATP-dependent RNA helic 66.7 19 0.00065 21.9 6.1 66 24-98 2-74 (76)
225 4e8u_A Putative uncharacterize 51.5 57 0.0019 23.7 6.8 57 24-83 14-82 (172)
226 2i9x_A Putative septation prot 43.1 36 0.0012 21.9 4.1 26 48-73 5-30 (87)
227 3swz_A Steroid 17-alpha-hydrox 39.4 59 0.002 26.6 6.1 59 24-91 16-78 (494)
228 3ts2_A Protein LIN-28 homolog 39.0 4.1 0.00014 29.0 -1.0 28 37-72 2-29 (148)
229 2ia9_A Putative septation prot 38.2 45 0.0016 22.0 4.1 26 48-73 5-30 (100)
230 3lpe_A Putative transcription 36.8 81 0.0028 20.1 6.1 44 35-83 21-69 (92)
231 2i9z_A Putative septation prot 36.7 50 0.0017 22.0 4.1 26 48-73 5-30 (105)
232 2npt_B Mitogen-activated prote 34.9 94 0.0032 20.3 5.4 47 29-83 35-82 (100)
233 1xn9_A 30S ribosomal protein S 34.6 97 0.0033 20.3 6.2 49 32-81 28-81 (101)
234 1ywx_A 30S ribosomal protein S 33.4 1E+02 0.0035 20.3 5.8 47 32-79 28-79 (102)
235 2jrh_A Mitogen-activated prote 31.8 1E+02 0.0036 19.8 5.2 62 29-98 19-81 (94)
236 2v94_A RPS24, 30S ribosomal pr 31.3 1.2E+02 0.004 20.2 6.0 48 32-80 37-89 (107)
237 3fut_A Dimethyladenosine trans 30.4 52 0.0018 25.5 4.0 30 23-53 111-140 (271)
238 2g1d_A 30S ribosomal protein S 29.3 27 0.00091 23.0 1.8 47 32-79 29-80 (98)
239 3mfb_A Uncharacterized protein 29.1 98 0.0034 22.1 4.9 37 33-69 2-41 (157)
240 3fry_A Probable copper-exporti 28.5 89 0.0031 18.0 6.5 58 22-86 6-63 (73)
241 4bby_A Alkyldihydroxyacetoneph 28.4 56 0.0019 28.8 4.3 52 30-82 351-406 (658)
242 3j21_T 50S ribosomal protein L 27.8 1.2E+02 0.0041 19.2 5.9 54 25-81 25-80 (86)
243 2c60_A Human mitogen-activated 27.1 1E+02 0.0035 20.4 4.3 47 29-83 46-93 (111)
244 3uzu_A Ribosomal RNA small sub 26.8 27 0.00092 27.2 1.8 33 23-55 115-147 (279)
245 1fme_A FSD-EY peptide; beta-BE 26.4 42 0.0014 16.1 1.7 12 35-46 14-25 (28)
246 2ki0_A DS119; beta-alpha-beta, 25.1 43 0.0015 17.0 1.7 19 20-43 3-21 (36)
247 2xzm_P RPS24E; ribosome, trans 24.8 1.8E+02 0.0062 20.5 5.6 48 32-80 31-83 (149)
248 2e5p_A Protein PHF1, PHD finge 24.1 43 0.0015 20.4 1.9 11 64-74 37-47 (68)
249 3u5c_Y RP50, 40S ribosomal pro 24.0 1.8E+02 0.0063 20.1 6.5 48 32-80 33-85 (135)
250 3tqs_A Ribosomal RNA small sub 23.6 21 0.00071 27.5 0.5 30 25-54 99-128 (255)
251 1x8d_A Hypothetical protein YI 23.6 1.6E+02 0.0054 19.2 5.9 41 37-81 27-67 (104)
252 3h7h_B Transcription elongatio 23.4 1.6E+02 0.0056 19.3 5.7 31 48-83 40-70 (106)
253 3lo3_A Uncharacterized conserv 23.3 1.5E+02 0.0051 18.8 5.0 20 63-82 52-71 (94)
254 1qyr_A KSGA, high level kasuga 23.2 71 0.0024 24.3 3.6 29 24-52 92-120 (252)
255 4aj5_1 SKA3, spindle and kinet 21.3 40 0.0014 22.2 1.5 13 35-47 89-101 (101)
256 3ftd_A Dimethyladenosine trans 20.3 70 0.0024 24.2 3.0 30 23-52 96-125 (249)
257 3u5e_X 60S ribosomal protein L 20.1 1.9E+02 0.0066 20.2 4.9 53 25-80 81-135 (142)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=4.4e-23 Score=152.98 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+++|+++|+++|++||.|++|.|+.++.|++++|||||+|.+.++|++||+ +++..|+++.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999997 5999999999999999
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
+..
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=142.60 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+++|+++|+++|++||.|++|+|++++.|++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356799999999999999999999999999999999999999999999999999999999996 6999999999999999
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 3
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=137.51 Aligned_cols=87 Identities=26% Similarity=0.479 Sum_probs=80.7
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v 95 (189)
...+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 029737 96 NLACLGV 102 (189)
Q Consensus 96 ~~a~~~~ 102 (189)
+++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9995543
No 4
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=138.63 Aligned_cols=87 Identities=60% Similarity=1.022 Sum_probs=79.0
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
....+.+.++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+..+..|+++.|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 44566788999999999999999999999999999999999999999999999999999999999998633489999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999544
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=5e-22 Score=139.48 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=77.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
+.+.++|||+|||+++++++|+++|++||.|++|.|++|+.|++++|||||+|++.++|++||+ +|+..|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3466899999999999999999999999999999999999999999999999999999999997 699999999999999
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 843
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=142.48 Aligned_cols=85 Identities=25% Similarity=0.393 Sum_probs=78.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
.++...++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999997 5999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++.+
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999544
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=7.1e-22 Score=139.27 Aligned_cols=89 Identities=26% Similarity=0.312 Sum_probs=80.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
..+..+.+.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+++.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 17 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp SCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334455677899999999999999999999999999999999999999999999999999999999996 5999999999
Q ss_pred eEEEEcccCC
Q 029737 93 ANCNLACLGV 102 (189)
Q Consensus 93 i~v~~a~~~~ 102 (189)
|+|++++.+.
T Consensus 97 l~V~~a~~~~ 106 (115)
T 2cpz_A 97 LKVQLKRSKN 106 (115)
T ss_dssp CEEECCCCSC
T ss_pred EEEEEcCCCC
Confidence 9999995553
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=133.82 Aligned_cols=86 Identities=30% Similarity=0.487 Sum_probs=79.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999999899999999999999999999995 69999999999999
Q ss_pred EcccCCC
Q 029737 97 LACLGVQ 103 (189)
Q Consensus 97 ~a~~~~~ 103 (189)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9955533
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=7.6e-22 Score=132.29 Aligned_cols=82 Identities=34% Similarity=0.709 Sum_probs=76.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
..+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999888888999999998
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=138.01 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=74.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh--CCCccCCeeeEEEEc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPVIDGRRANCNLA 98 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~--~~~~i~g~~i~v~~a 98 (189)
+++|||+|||+++||++|+++|++|| .|++|+|++++.|++++|||||+|.+.++|++||+. +...|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999999999999999999999999999999975 445799999999999
Q ss_pred ccCC
Q 029737 99 CLGV 102 (189)
Q Consensus 99 ~~~~ 102 (189)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 11
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-21 Score=137.03 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=77.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
+..+.++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999997 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++..
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99544
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=135.49 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=80.2
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
.+....+.++|||+|||+++++++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34455678899999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
+|++++..
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dnm_A 86 RVQVARYG 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEECCcC
Confidence 99999543
No 13
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.4e-21 Score=133.94 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=78.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v 95 (189)
...+.+.++|||+|||+++++++|+++|++|| |.+|.|++++.|++++|||||+|.+.++|++||++++..|.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 34556778999999999999999999999996 99999999999999999999999999999999977999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++..+
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999543
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=7.2e-21 Score=133.97 Aligned_cols=90 Identities=34% Similarity=0.451 Sum_probs=81.5
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
.+....+.++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999999899999999999999999999997 59999999999
Q ss_pred EEEEcccCCCC
Q 029737 94 NCNLACLGVQR 104 (189)
Q Consensus 94 ~v~~a~~~~~~ 104 (189)
+|.++..+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999655433
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=133.62 Aligned_cols=88 Identities=35% Similarity=0.611 Sum_probs=79.5
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
....+.+.++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+. .+.|+|+.|.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 445566778999999999999999999999999999999999999999999999999999999999984 6689999999
Q ss_pred EEEcccCCC
Q 029737 95 CNLACLGVQ 103 (189)
Q Consensus 95 v~~a~~~~~ 103 (189)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999965533
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=137.34 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCC--EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC----ccC
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP----VID 89 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~----~i~ 89 (189)
..+....+|||+|||+++|+++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+ +++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45667889999999999999999999999995 6799999999999999999999999999999997 4554 489
Q ss_pred CeeeEEEEcc
Q 029737 90 GRRANCNLAC 99 (189)
Q Consensus 90 g~~i~v~~a~ 99 (189)
|+.|.|++++
T Consensus 84 Gr~i~V~~Ak 93 (95)
T 2lkz_A 84 GKTIGVDFAK 93 (95)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcc
Confidence 9999999984
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=130.48 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 466899999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=134.17 Aligned_cols=85 Identities=16% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCC-CCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~t-g~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
+..+.+.++|||+|||+++++++|+++|++|| |.+|.|+.++.+ ++++|||||+|.+.++|++||.+++..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34455778999999999999999999999999 999999999988 9999999999999999999997799999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999544
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=133.16 Aligned_cols=85 Identities=35% Similarity=0.621 Sum_probs=78.7
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
....+.++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344577899999999999999999999999999999999999999999999999999999999995 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++.+
T Consensus 87 ~~a~~~ 92 (102)
T 1x5s_A 87 DQAGKS 92 (102)
T ss_dssp EEEECC
T ss_pred EECCCC
Confidence 999554
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=133.72 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
..+..+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3455678899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999544
No 21
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=136.26 Aligned_cols=88 Identities=34% Similarity=0.700 Sum_probs=80.5
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
....+.+.++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EEEcccCC
Q 029737 95 CNLACLGV 102 (189)
Q Consensus 95 v~~a~~~~ 102 (189)
|+++.++.
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99885443
No 22
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=3.3e-22 Score=157.46 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=75.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..++|||+||++++|+++|+++|++|| .|++|+|++++.|++++|||||+|.+.++|++||+ +++..|+++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999997 699999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.6e-21 Score=132.79 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
.......++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455677899999999999999999999999999999999999899999999999999999999997 599999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999544
No 24
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1e-21 Score=138.92 Aligned_cols=86 Identities=27% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
..+..+.+.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+ +++..|+|+.
T Consensus 32 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 32 GKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp SSSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344456677899999999999999999999999999999999999999999999999999999999997 5999999999
Q ss_pred eEEEEcc
Q 029737 93 ANCNLAC 99 (189)
Q Consensus 93 i~v~~a~ 99 (189)
|+|++++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999873
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4e-21 Score=134.34 Aligned_cols=87 Identities=28% Similarity=0.422 Sum_probs=79.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hC------CCccC
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA------APVID 89 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~------~~~i~ 89 (189)
....+.++|||+|||+++|+++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+ ++ +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345677899999999999999999999999999999999999999999999999999999999997 57 88999
Q ss_pred CeeeEEEEcccCCC
Q 029737 90 GRRANCNLACLGVQ 103 (189)
Q Consensus 90 g~~i~v~~a~~~~~ 103 (189)
|+.|+|.++..+..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999965533
No 26
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=132.93 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=78.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhh-cCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc-cCCee
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-IDGRR 92 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~-i~g~~ 92 (189)
+.+..+.++|||+|||+++|+++|+++|++ ||.|.+|.|+.++ +++++|||||+|.+.++|++||+ +++.. |+|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345567789999999999999999999999 9999999999998 89999999999999999999997 68888 99999
Q ss_pred eEEEEcccCCC
Q 029737 93 ANCNLACLGVQ 103 (189)
Q Consensus 93 i~v~~a~~~~~ 103 (189)
|+|+++..+..
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999855443
No 27
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=2.7e-21 Score=138.30 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
....+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999996 6999999999999
Q ss_pred EEcccCCC
Q 029737 96 NLACLGVQ 103 (189)
Q Consensus 96 ~~a~~~~~ 103 (189)
+++..+..
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 99966543
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=131.89 Aligned_cols=82 Identities=27% Similarity=0.416 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEE-EEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
...++|||+|||+++++++|+++|++||.|.+| .|++++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 999998899999999999999999999998 699999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+..+
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9444
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=3.7e-21 Score=133.53 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=79.1
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc---CC
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI---DG 90 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i---~g 90 (189)
....+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+ .+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 34456678899999999999999999999999999999999999999999999999999999999997 688777 88
Q ss_pred eeeEEEEcccC
Q 029737 91 RRANCNLACLG 101 (189)
Q Consensus 91 ~~i~v~~a~~~ 101 (189)
+.|+|+++..+
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999999544
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=133.75 Aligned_cols=85 Identities=31% Similarity=0.377 Sum_probs=78.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 995543
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=132.53 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=79.7
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEec-CCCCCcccEEEEEECCHHHHHHHHH-h-CCCccCCee
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRR 92 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~tg~~~G~afV~F~~~~~a~~al~-~-~~~~i~g~~ 92 (189)
...+...++|||+|||+++++++|+++|++||.|+.|.|+.+ +.+++++|||||+|.+.++|++||+ + ++..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345667789999999999999999999999999999999999 7889999999999999999999996 6 899999999
Q ss_pred eEEEEcccCC
Q 029737 93 ANCNLACLGV 102 (189)
Q Consensus 93 i~v~~a~~~~ 102 (189)
|+|+++..+.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999995543
No 32
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=2.6e-21 Score=135.41 Aligned_cols=86 Identities=34% Similarity=0.620 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
.+.+.++|||+|||+++|+++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 45577899999999999999999999999999999999999999999999999999999999998767889999999999
Q ss_pred cccCCC
Q 029737 98 ACLGVQ 103 (189)
Q Consensus 98 a~~~~~ 103 (189)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 965543
No 33
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=138.30 Aligned_cols=83 Identities=36% Similarity=0.666 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
+.+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 44568999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
.++
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=128.09 Aligned_cols=82 Identities=37% Similarity=0.493 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999999899999999999999999999997 5999999999999999
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 35
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=134.14 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
......++|||+|||+++||++|+++|++||. ++|+|++++ +++++|||||+|++.++|++||++++..|+++.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 34566789999999999999999999999994 599999998 8999999999999999999999889999999999999
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
++
T Consensus 88 ~~ 89 (102)
T 1wez_A 88 LN 89 (102)
T ss_dssp EE
T ss_pred EC
Confidence 88
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=7.6e-21 Score=126.10 Aligned_cols=79 Identities=33% Similarity=0.485 Sum_probs=75.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
.+|||+|||+++++++|+++|++||.|.++.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999999999999999999999999997 6999999999999999544
No 37
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.5e-22 Score=139.26 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=80.0
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
..+...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||.+++..|+|+.|+|+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred EcccCCC
Q 029737 97 LACLGVQ 103 (189)
Q Consensus 97 ~a~~~~~ 103 (189)
++..+..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9976543
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=129.72 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=78.2
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
....+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 33445677899999999999999999999999999999999999999999999999999999999996 69999999999
Q ss_pred EEEEcc
Q 029737 94 NCNLAC 99 (189)
Q Consensus 94 ~v~~a~ 99 (189)
+|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=130.42 Aligned_cols=86 Identities=30% Similarity=0.447 Sum_probs=78.4
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
....+.+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ +++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445668899999999999999999999999999999999998 79999999999999999999997 69999999999
Q ss_pred EEEEcccCC
Q 029737 94 NCNLACLGV 102 (189)
Q Consensus 94 ~v~~a~~~~ 102 (189)
.|+++..+.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 999995543
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-21 Score=129.17 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=78.8
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
......+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEcc
Q 029737 94 NCNLAC 99 (189)
Q Consensus 94 ~v~~a~ 99 (189)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999984
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=6.2e-21 Score=127.07 Aligned_cols=81 Identities=32% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++ +++..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999996 699999999999998
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 42
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=133.07 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
.+...++|||+|||+++|+++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|.+||++++..|+|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999999888999999999998
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.6e-20 Score=130.10 Aligned_cols=85 Identities=26% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC---eee
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG---RRA 93 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g---~~i 93 (189)
.+...++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999998 79999999999999999999997 69888888 999
Q ss_pred EEEEcccCCC
Q 029737 94 NCNLACLGVQ 103 (189)
Q Consensus 94 ~v~~a~~~~~ 103 (189)
+|+++..+..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999965543
No 44
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-21 Score=130.06 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=75.8
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCC---CCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. |++++|||||+|.+.++|++||+ +++..|+++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4668999999999999999999999999999999999876 66899999999999999999998 5999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++..+
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999544
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=131.07 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++..+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99654
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.2e-21 Score=132.48 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999996 69999999999999986
Q ss_pred cCC
Q 029737 100 LGV 102 (189)
Q Consensus 100 ~~~ 102 (189)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 553
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=128.99 Aligned_cols=85 Identities=26% Similarity=0.392 Sum_probs=76.4
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
..+..+...++|||+|||+++++++|+++|++||.|++|.|+.++. ++++|||||+|.+.++|++||+ +++..|+|+.
T Consensus 8 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 8 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp ----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3445566789999999999999999999999999999999999986 9999999999999999999997 6999999999
Q ss_pred eEEEEcc
Q 029737 93 ANCNLAC 99 (189)
Q Consensus 93 i~v~~a~ 99 (189)
|+|++++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9999883
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=129.14 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=76.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+.+.++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999996 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++.++
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99544
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=132.26 Aligned_cols=88 Identities=32% Similarity=0.490 Sum_probs=80.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
..+..+...++|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+ +++..|.|+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556677899999999999999999999999999999999999999999999999999999999997 6999999999
Q ss_pred eEEEEcccC
Q 029737 93 ANCNLACLG 101 (189)
Q Consensus 93 i~v~~a~~~ 101 (189)
|+|++++.+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998544
No 50
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=140.10 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=79.6
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE--EEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC--
Q 029737 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP-- 86 (189)
Q Consensus 12 ~~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~-- 86 (189)
....+..+...++|||+|||+++|+++|+++|++||.|.. |+|++++.|++++|||||+|.+. +|.+||+ +++.
T Consensus 13 ~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 13 QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 3444555677889999999999999999999999999976 99999999999999999999999 9999996 5888
Q ss_pred --ccCCeeeEEEEcccC
Q 029737 87 --VIDGRRANCNLACLG 101 (189)
Q Consensus 87 --~i~g~~i~v~~a~~~ 101 (189)
.|+|+.|+|++++..
T Consensus 92 ~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGS 108 (131)
T ss_dssp SCCGGGCCCCCEECCCS
T ss_pred CccCCCEEEEEEECCCC
Confidence 999999999999553
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=8.3e-21 Score=134.05 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..++|||+|||+++|+++|+++|++||.|++|+|++++ +.++|||||+|.+.++|++||+ +++..|+|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 4589999999999999999996 69999999999999985
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=9.7e-21 Score=127.18 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=75.8
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|+.+++..|+|+.|+|++++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999997799999999999999843
No 53
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.4e-21 Score=132.98 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=78.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEe--------EEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~ 87 (189)
..+.+.++|||+|||+++|+++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|++||+ +++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4566789999999999999999999999999999 69999999999999999999999999999997 69999
Q ss_pred cCCeeeEEEEcccC
Q 029737 88 IDGRRANCNLACLG 101 (189)
Q Consensus 88 i~g~~i~v~~a~~~ 101 (189)
|.|+.|+|++++.+
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99999999999544
No 54
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=128.90 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
......++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345567899999999999999999999999999999999998 59999999999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998543
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=128.98 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=77.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEe-EEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee---
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR--- 92 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~--- 92 (189)
.....++|||+|||+++++++|+++|++||.|. +|+|++++.+++++|||||+|.+.++|++||+ +++..|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445778999999999999999999999999999 99999999999999999999999999999998 6999999999
Q ss_pred -eEEEEccc
Q 029737 93 -ANCNLACL 100 (189)
Q Consensus 93 -i~v~~a~~ 100 (189)
|+|++++.
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999843
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=128.00 Aligned_cols=85 Identities=24% Similarity=0.303 Sum_probs=76.5
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
...+...++|||+|||+++++++|+++|++||.|++|.|+.++.+ ++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345667899999999999999999999999999999999998643 68999999999999999997 699999999999
Q ss_pred EEEcccCC
Q 029737 95 CNLACLGV 102 (189)
Q Consensus 95 v~~a~~~~ 102 (189)
|++++.+.
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99995543
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.9e-21 Score=133.12 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=77.6
Q ss_pred CCCccEEEEcCCCC------CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC-
Q 029737 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG- 90 (189)
Q Consensus 19 ~~~~~~ifV~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g- 90 (189)
+...++|||+|||+ ++++++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|++||+ +++..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 99999999999999999999999999999999999999999999999996 69999999
Q ss_pred eeeEEEEcccC
Q 029737 91 RRANCNLACLG 101 (189)
Q Consensus 91 ~~i~v~~a~~~ 101 (189)
+.|+|+++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999654
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=128.96 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=77.6
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE--------EEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP 86 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~ 86 (189)
+......++|||+|||+++++++|+++|++||.|.+ |.|+.++.+++++|||||+|.+.++|++||+ +++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345567789999999999999999999999999999 9999999999999999999999999999997 6999
Q ss_pred ccCCeeeEEEEc
Q 029737 87 VIDGRRANCNLA 98 (189)
Q Consensus 87 ~i~g~~i~v~~a 98 (189)
.|.|+.|+|+++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999987
No 59
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=2.9e-21 Score=125.92 Aligned_cols=75 Identities=40% Similarity=0.738 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
+|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|+++++..|+|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999999999999999999875
No 60
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.7e-20 Score=131.04 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=79.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
....+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999997 6999999999999
Q ss_pred EEcccCC
Q 029737 96 NLACLGV 102 (189)
Q Consensus 96 ~~a~~~~ 102 (189)
+++..+.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9996553
No 61
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=133.35 Aligned_cols=85 Identities=18% Similarity=0.402 Sum_probs=73.8
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecC-CCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
.......++|||+|||+++++++|+++|++|| |.+|.|+.++ .+++++|||||+|.+.++|++||++++..|+|+.|+
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~ 91 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIR 91 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEE
Confidence 34456778999999999999999999999999 9999999998 689999999999999999999997799999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998543
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.6e-20 Score=128.19 Aligned_cols=81 Identities=23% Similarity=0.465 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999996 69999999999999996
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
.+
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=126.99 Aligned_cols=87 Identities=29% Similarity=0.479 Sum_probs=77.6
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
....+.+.++|||+|||+++|+++|+++|++||.|++|.|+.++. .++|||||+|.+.++|++||+ +++..|+++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556778999999999999999999999999999999998864 389999999999999999997 69999999999
Q ss_pred EEEEcccCCC
Q 029737 94 NCNLACLGVQ 103 (189)
Q Consensus 94 ~v~~a~~~~~ 103 (189)
+|+++..+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999965543
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=126.60 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=77.3
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v 95 (189)
...+...++|||+|||+++++++|+++|++| .|.+|.|+++ .+++++|||||+|.+.++|++||++++..|.|+.|+|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3455677899999999999999999999999 9999999999 6899999999999999999999998888999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
.++..+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999544
No 65
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=129.80 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=75.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v 95 (189)
......++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|++.++|++||+.++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34456789999999999999999999999999987 888888 6899999999999999999999988889999999999
Q ss_pred EEccc
Q 029737 96 NLACL 100 (189)
Q Consensus 96 ~~a~~ 100 (189)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 98843
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=140.33 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=75.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-CCCccCCeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~~~~i~g~~i~v~~ 97 (189)
..++|||+|||+++|+++|+++|++|| .|.+|.|+.|+.|++++|||||+|.+.++|++||+. ++..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999975 99999999999999
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 67
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=2e-20 Score=133.37 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|++++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999997799999999999999843
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-20 Score=128.11 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=74.1
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
....+.+.++|||+|||+++|+++|+++|++||.|+.|.|..+ ++++|||||+|.+.++|++||+ +++..|+++.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445667789999999999999999999999999999999654 5589999999999999999995 69999999999
Q ss_pred EEEEccc
Q 029737 94 NCNLACL 100 (189)
Q Consensus 94 ~v~~a~~ 100 (189)
+|++++.
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 9999843
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-21 Score=136.75 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=77.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCE-eEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
.+.+.++|||+|||+++|+++|+++|++||.| ..|.|+.++ +++++|||||+|.+.++|++||++++..|+++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 889999998 8999999999999999999999888889999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986553
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.6e-20 Score=135.35 Aligned_cols=86 Identities=23% Similarity=0.387 Sum_probs=79.2
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
...+.+.++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999997 699999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++..+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998543
No 71
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.83 E-value=5.2e-21 Score=124.61 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
+|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|+++++..|+|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998888999999999875
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-21 Score=130.94 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=78.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++..+.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 996543
No 73
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=9.2e-20 Score=155.76 Aligned_cols=84 Identities=21% Similarity=0.460 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+.+|+++|+++|++||.|+.|.|+.++.|++++|||||+|.+.++|.+||+ +++..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 455799999999999999999999999999999999999999999999999999999999996 5999999999999999
Q ss_pred ccCCC
Q 029737 99 CLGVQ 103 (189)
Q Consensus 99 ~~~~~ 103 (189)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 76544
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=6.5e-20 Score=127.39 Aligned_cols=83 Identities=30% Similarity=0.421 Sum_probs=76.9
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
.......++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455677899999999999999999999999999999999998 89999999999999999999997 699999999999
Q ss_pred EEEcc
Q 029737 95 CNLAC 99 (189)
Q Consensus 95 v~~a~ 99 (189)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99983
No 75
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.4e-19 Score=125.05 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
....+.++|||+|||+++|+++|+++|++||.|.+|.|+ ++||||+|.+.++|++||+ +++..|+++.|+|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 344567899999999999999999999999999999886 4599999999999999997 6999999999999
Q ss_pred EEcccCCCCC
Q 029737 96 NLACLGVQRS 105 (189)
Q Consensus 96 ~~a~~~~~~~ 105 (189)
+++..+....
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9996655443
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=7.5e-20 Score=123.62 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=75.4
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+...++|||+|||+++++++|+++|++||.|++|.|+++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34557789999999999999999999999999999999874 78999999999999999999997 5999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++..
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 998443
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=124.15 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCC-cccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~-~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++.++. ++|||||+|.+.++|++|++ +++..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 89999999999999999997 6999999999999999
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 78
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.83 E-value=2.6e-21 Score=141.20 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=72.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
...+.++|||+|||+++||++|+++|++|| |++|.|++++. ++++|||||+|++.++|++||++++..|+++.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 345668999999999999999999999999 77999999986 9999999999999999999997789999999999988
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
+.
T Consensus 120 a~ 121 (139)
T 2hgn_A 120 NS 121 (139)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 79
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=126.10 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC----
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG---- 90 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g---- 90 (189)
+......++|||+|||+++|+++|+++|++||.|++|.|+.+ |||||+|++.++|++||+ +++..|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 334566789999999999999999999999999999999876 799999999999999997 68889999
Q ss_pred -eeeEEEEcccC
Q 029737 91 -RRANCNLACLG 101 (189)
Q Consensus 91 -~~i~v~~a~~~ 101 (189)
+.|+|+++.++
T Consensus 82 ~~~i~V~~a~~~ 93 (108)
T 1x4c_A 82 TAYIRVKVDGPR 93 (108)
T ss_dssp EEEEEEEESSCC
T ss_pred ceEEEEEeCCCC
Confidence 99999999553
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=127.87 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=76.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44566899999999999999999999999999988889998999999999999999999999996 68899999999999
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
++.
T Consensus 91 ~a~ 93 (98)
T 2cqp_A 91 LGS 93 (98)
T ss_dssp ESS
T ss_pred EcC
Confidence 983
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=125.07 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCcHHHHH----HHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 20 TTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
.+.++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+ ++||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999999875 8899999999999999997 699999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|+++++.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999544
No 82
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=123.46 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++..+..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999986448999999999986
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=126.08 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCC-EeEEEEE-ecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeeeE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRAN 94 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~tg~~~G~afV~F~~~~~a~~al~-~~--~~~i~g~~i~ 94 (189)
.+.++|||+|||+++|+++|+++|++||. |.+|.|+ .++.+++++|||||+|.+.++|++||+ ++ ...|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 888889999999999999999999997 44 4789999999
Q ss_pred EEEcccCCC
Q 029737 95 CNLACLGVQ 103 (189)
Q Consensus 95 v~~a~~~~~ 103 (189)
|+++.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999976644
No 84
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=131.38 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
..+.++|||+|||+++|+++|+++|++| .|.+|.|+.++. ++++|||||+|.+.++|++||++++..|+++.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3455799999999999999999999999 899999999986 99999999999999999999988999999999999888
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 44
No 85
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=2.4e-20 Score=132.37 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=77.4
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i 93 (189)
....+.++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||++++..|+++.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 34556789999999999999999999999998 89999999987 999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998543
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.6e-20 Score=127.75 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 873
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=9.2e-20 Score=135.06 Aligned_cols=84 Identities=27% Similarity=0.477 Sum_probs=78.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++...
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99554
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=127.96 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~--~~~i~g~~i~ 94 (189)
++.+.++|||+|||+++||++|+++|++||.|++|.|+++ ||||||+|++.++|++||+ ++ +..|.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557789999999999999999999999999999999865 6899999999999999997 44 4689999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|++++.+
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9998554
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=133.02 Aligned_cols=83 Identities=31% Similarity=0.420 Sum_probs=76.4
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
...+.+.++|||+|||+++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999996 688999999999
Q ss_pred EEEc
Q 029737 95 CNLA 98 (189)
Q Consensus 95 v~~a 98 (189)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=2.6e-20 Score=135.17 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=78.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+.+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999997 5999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++..
T Consensus 122 ~~a~~~ 127 (135)
T 2lea_A 122 QMARYG 127 (135)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999544
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=128.99 Aligned_cols=85 Identities=28% Similarity=0.424 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44677899999999999999999999999999999999998 89999999999999999999997 69999999999999
Q ss_pred EcccCCC
Q 029737 97 LACLGVQ 103 (189)
Q Consensus 97 ~a~~~~~ 103 (189)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9965443
No 92
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=2e-20 Score=136.00 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i 93 (189)
....+.++|||+|||+++|+++|+++|++||. |.+|.|++++. ++++|||||+|++.++|++||++++..|+++.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34567789999999999999999999999999 89999999987 999999999999999999999998899999999
Q ss_pred EEEEccc
Q 029737 94 NCNLACL 100 (189)
Q Consensus 94 ~v~~a~~ 100 (189)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.6e-19 Score=135.05 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=78.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred EcccCCC
Q 029737 97 LACLGVQ 103 (189)
Q Consensus 97 ~a~~~~~ 103 (189)
++..+..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9966543
No 94
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=3e-20 Score=133.34 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=74.4
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEe--EEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
....+.++|||+|||+++||++|+++|++| .|+ +|.|++++. ++++|||||+|++.++|++||++++..|+++.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 677 899999987 9999999999999999999999888899999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 95
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=3.8e-20 Score=127.59 Aligned_cols=84 Identities=30% Similarity=0.523 Sum_probs=77.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
.+...++|||+|||+++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999 88899999999999
Q ss_pred cccCCC
Q 029737 98 ACLGVQ 103 (189)
Q Consensus 98 a~~~~~ 103 (189)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 865544
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=127.61 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=76.7
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 029737 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (189)
Q Consensus 13 ~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~ 91 (189)
......+...++|||+|||+++++++|+++|++||.|++|.|+.++ +.++|||||+|.+.++|++|++ +++..|+|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3444556678899999999999999999999999999999999885 4589999999999999999997 699999999
Q ss_pred eeEEEEcccC
Q 029737 92 RANCNLACLG 101 (189)
Q Consensus 92 ~i~v~~a~~~ 101 (189)
.|+|++++.+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999544
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-20 Score=134.04 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
...+.++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||++++..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34566899999999999999999999999999887677777789999999999999999999999999999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=125.68 Aligned_cols=82 Identities=17% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc-------
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI------- 88 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i------- 88 (189)
..+.+.++|||+|||+++|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+ +++..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445677899999999999999999999999999999999998 89999999999999999999997 688888
Q ss_pred -CCeeeEEEEcc
Q 029737 89 -DGRRANCNLAC 99 (189)
Q Consensus 89 -~g~~i~v~~a~ 99 (189)
.++.|.|+++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 57779999884
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=123.84 Aligned_cols=81 Identities=26% Similarity=0.342 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+.+.++|||+|||+++|+++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||+ +++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 355678899999999999999999999999977 56666 578999999999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++..+
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 999444
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=124.88 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999997 6888899987665443
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-19 Score=122.64 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=70.9
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh---CCCccCCee
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD---AAPVIDGRR 92 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~---~~~~i~g~~ 92 (189)
.....+.++|||+|||+++|+++|+++|++||.|++|.|+++ ||||||+|++.++|++||+. +...|.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344457789999999999999999999999999999988764 78999999999999999973 567899999
Q ss_pred eEEEEcccCC
Q 029737 93 ANCNLACLGV 102 (189)
Q Consensus 93 i~v~~a~~~~ 102 (189)
|.|++++.+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999996543
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=123.19 Aligned_cols=81 Identities=33% Similarity=0.476 Sum_probs=73.2
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+.+.++|||+|||+++|+++|+++|++| ..|.++.++.+++++|||||+|.+.++|++||+ +++..|+++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345677899999999999999999999977 367888898899999999999999999999997 6999999999999
Q ss_pred EEccc
Q 029737 96 NLACL 100 (189)
Q Consensus 96 ~~a~~ 100 (189)
+++++
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99944
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=118.85 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=69.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+.+.++|||+|||+++++++|+++|++||.|++|.|+ ++||||+|.+.++|++||+ +++..|+++.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45677899999999999999999999999999999986 5799999999999999996 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++.+
T Consensus 76 ~a~~~ 80 (90)
T 2dnq_A 76 ASKNK 80 (90)
T ss_dssp CSSCC
T ss_pred ECCCC
Confidence 99443
No 104
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-20 Score=129.27 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998433222222268899999999999999999997 59999999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++..+.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 995543
No 105
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-20 Score=129.64 Aligned_cols=84 Identities=12% Similarity=0.138 Sum_probs=77.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i 93 (189)
......++|||+|||+++|+++|+++|++||. |.+|.|+.++. ++++|||||+|.+.++|++||++++..|+++.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 34567789999999999999999999999988 89999999987 999999999999999999999998899999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
+|.++..+
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998543
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=124.54 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCCccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hC--CCccCCeee
Q 029737 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~--~~~i~g~~i 93 (189)
...+.++|||+|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|++.++|.+||+ ++ ...|.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999865 4799999999999999997 44 456999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
.|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999544
No 107
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=2.5e-20 Score=125.55 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
++|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.+ |.+|++ +++..|+|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999997 5999999999999999654
Q ss_pred C
Q 029737 102 V 102 (189)
Q Consensus 102 ~ 102 (189)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 108
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-20 Score=132.00 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCE----eEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
..+.++|||+|||+++|+++|+++|++||.| .+|.|+.++ +++++|||||+|++.++|++||+.++..|.++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3456899999999999999999999999975 689999985 79999999999999999999998888899999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.5e-19 Score=121.52 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-h--CCCccCCeee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~--~~~~i~g~~i 93 (189)
....+.++|||+|||+++++++|+++|++||.|++|.|+++ ||||||+|++.++|.+||+ + +...|.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999998753 6899999999999999997 4 3456999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
.|++++.+
T Consensus 84 ~V~~a~~~ 91 (104)
T 1wex_A 84 FFNYSTSK 91 (104)
T ss_dssp EEEECSSS
T ss_pred EEEEccCc
Confidence 99999554
No 110
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=120.31 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=69.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
....++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||++++..|+|+.|.|+++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4466799999999999999999999999999987 66666665 999999999999999999899999999999877
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 433
No 111
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-20 Score=129.18 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
....++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++||++++..|.|+.|+|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345789999999999999999999999999887 6677777899999999999999999999998999999999999999
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
..+
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 112
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-21 Score=136.24 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeE--------EEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i 88 (189)
++.+.++|||+|||+++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+ +++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4557789999999999999999999999999998 9999998899999999999999999999997 699999
Q ss_pred CCeeeEEEEcccC
Q 029737 89 DGRRANCNLACLG 101 (189)
Q Consensus 89 ~g~~i~v~~a~~~ 101 (189)
+|+.|+|+++..+
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999998443
No 113
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=125.48 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=75.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHH---HHHhhcCCEeEEEEEecCCCC---CcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 029737 18 GDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~tg---~~~G~afV~F~~~~~a~~al~-~~~~~i~g 90 (189)
.....++|||+|||+++++++|+ ++|++||.|.+|.|++++.++ +++|||||+|++.++|++||+ +++..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34466799999999999999999 999999999999999988754 566999999999999999997 59999999
Q ss_pred eeeEEEEcccCC
Q 029737 91 RRANCNLACLGV 102 (189)
Q Consensus 91 ~~i~v~~a~~~~ 102 (189)
+.|+|+++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999995543
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=124.82 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCCCCCCCccEEEEcCCCCC-CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-h--CCCccC
Q 029737 14 AGQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVID 89 (189)
Q Consensus 14 ~~~~~~~~~~~ifV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~--~~~~i~ 89 (189)
.......+.++|||+|||++ +|+++|+++|++||.|.+|.|++ ++|||||+|++.++|++||+ + +...|.
T Consensus 17 ~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 17 KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp CCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred hccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 33344567889999999998 99999999999999999999974 47899999999999999997 3 456799
Q ss_pred CeeeEEEEcccC
Q 029737 90 GRRANCNLACLG 101 (189)
Q Consensus 90 g~~i~v~~a~~~ 101 (189)
|+.|+|+++..+
T Consensus 91 Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 91 GRCVKVDLSEKY 102 (112)
T ss_dssp SSCCEEEEECSC
T ss_pred CEEEEEEECccc
Confidence 999999999543
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=125.02 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh-C--CCccCCeee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-A--APVIDGRRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~-~--~~~i~g~~i 93 (189)
....+.++|||+|||+++||++|+++|++||.|++|.|+++ ||||||+|++.++|++||+. + ...|.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999875 68999999999999999974 4 468999999
Q ss_pred EEEEcccCC
Q 029737 94 NCNLACLGV 102 (189)
Q Consensus 94 ~v~~a~~~~ 102 (189)
+|++++.+.
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999996543
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=117.60 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=70.7
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
........++|||+|||+++++++|+++|++||.|++|.|++ +||||+|.+.++|++||+ +++..|.++.|
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 344566788999999999999999999999999999999863 399999999999999996 69999999999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
+|++++.+
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999444
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=6.5e-19 Score=133.88 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=79.1
Q ss_pred CCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEE
Q 029737 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (189)
Q Consensus 16 ~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v 95 (189)
+.++...++|||+|||+++|+++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+||+.++..|.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 34566788999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998544
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=121.60 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+...++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 6899999999999999996 69999999999999
Q ss_pred EcccCCC
Q 029737 97 LACLGVQ 103 (189)
Q Consensus 97 ~a~~~~~ 103 (189)
+++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9965543
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=123.33 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCCCC------cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 029737 18 GDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g 90 (189)
.+...++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|.+||+ +++..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 889999999999999999988 4679999999999999999999997 59999999
Q ss_pred e-eeEEEEccc
Q 029737 91 R-RANCNLACL 100 (189)
Q Consensus 91 ~-~i~v~~a~~ 100 (189)
+ .|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999843
No 120
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=6.4e-19 Score=133.90 Aligned_cols=85 Identities=28% Similarity=0.573 Sum_probs=75.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
...++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|.+||+.++..|+|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 35589999999999999999999999999999999999999999999999999999999999888889999999999996
Q ss_pred cCCCC
Q 029737 100 LGVQR 104 (189)
Q Consensus 100 ~~~~~ 104 (189)
++.+.
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 65443
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=5.4e-19 Score=123.47 Aligned_cols=81 Identities=25% Similarity=0.401 Sum_probs=69.9
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 029737 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (189)
Q Consensus 13 ~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~ 91 (189)
......+...++|||+|||+++|+++|+++|++||.|++|.|+ +|||||+|.+.++|++|++ +++..|+|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3344556778899999999999999999999999999999987 6899999999999999997 699999999
Q ss_pred eeEEEEcccC
Q 029737 92 RANCNLACLG 101 (189)
Q Consensus 92 ~i~v~~a~~~ 101 (189)
.|.|++++.+
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999999554
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=116.00 Aligned_cols=78 Identities=29% Similarity=0.450 Sum_probs=71.0
Q ss_pred CCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-h-CCCccCCee
Q 029737 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRR 92 (189)
Q Consensus 15 ~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~-~~~~i~g~~ 92 (189)
.+..+.+.++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++ + ++..++|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3455677889999999999999999999999999999999864 7899999999999999997 6 888999999
Q ss_pred eEEEEc
Q 029737 93 ANCNLA 98 (189)
Q Consensus 93 i~v~~a 98 (189)
|+|+++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999987
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=120.03 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++|++ +++..|+|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 68899999999999999997 5888999999999999554
Q ss_pred C
Q 029737 102 V 102 (189)
Q Consensus 102 ~ 102 (189)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=120.31 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCC--ccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP--VIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~--~i~g~~i~ 94 (189)
...++++|||+|||+++|+++|+++|++||.|++|.+++ .||||||+|++.++|.+||+ +++. .|.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445778999999999999999999999999999999874 36899999999999999997 4544 48899999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|++++.
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 999954
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.5e-19 Score=118.19 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=67.3
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++ +|+.++.++.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999865 58999999999999999997 69999999999999983
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=125.20 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=72.3
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHH----HHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 029737 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~ 91 (189)
....+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+||+ +++..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345567899999999999999876 6999999999988753 57899999999999999999996 699999999
Q ss_pred eeEEEEcccC
Q 029737 92 RANCNLACLG 101 (189)
Q Consensus 92 ~i~v~~a~~~ 101 (189)
.|+|++++.+
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999654
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=118.16 Aligned_cols=77 Identities=23% Similarity=0.449 Sum_probs=69.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC--CeeeEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--GRRANC 95 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~--g~~i~v 95 (189)
..+.++|||+|||+++|+++|+++|++||.|++|.+.++ +|||||+|.+.++|++||+ +++..|+ ++.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999998754 6799999999999999997 6999999 999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++++
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999543
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=117.96 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=66.0
Q ss_pred ccEEEEcCCCCCC------cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe-ee
Q 029737 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-RA 93 (189)
Q Consensus 22 ~~~ifV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~-~i 93 (189)
.++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++||+ +++..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 4579999999999999999999997 599999999 77
Q ss_pred EE
Q 029737 94 NC 95 (189)
Q Consensus 94 ~v 95 (189)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 129
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=115.87 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=69.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+.+.++|||+|||+++|+++|+++|++||.|.+|.|++ +||||+|.+.++|++||+ +++..|+++.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456778999999999999999999999999999999863 399999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++...
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999544
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=2.6e-19 Score=126.33 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee-----
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR----- 92 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~----- 92 (189)
....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+ +++.+|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 356789999999999999999999999999999999765 799999999999999997 6999999998
Q ss_pred eEEEEc
Q 029737 93 ANCNLA 98 (189)
Q Consensus 93 i~v~~a 98 (189)
|+|..+
T Consensus 86 i~v~~~ 91 (115)
T 3beg_B 86 IRVKVD 91 (115)
T ss_dssp CEEEEC
T ss_pred EEeccC
Confidence 555554
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=118.57 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCC-EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCC-CccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA-PVIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~-~~i~g~~i~ 94 (189)
.+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||+ +++ ..|+|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4557789999999999999999999999999 6666552 47899999999999999997 688 899999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|++++.+
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999544
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.8e-19 Score=121.36 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=69.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.+...++|||+|||+++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999987 357899999999999999996 59999999999999
Q ss_pred Eccc
Q 029737 97 LACL 100 (189)
Q Consensus 97 ~a~~ 100 (189)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8843
No 133
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.6e-18 Score=134.41 Aligned_cols=81 Identities=27% Similarity=0.367 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
.+.++|||+|||+++||++|+++|++||.|++|+|++++.|++++|||||+|.+.++|++||+ +++..+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456799999999999999999999999999999999999999999999999999999999997 5889999999999887
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 134
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=116.76 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=68.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhc--CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
...+.++|||+|||+++|+++|+++|++| |.|.+|.+. +|||||+|.+.++|++||+ +++..|+++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999998764 5799999999999999997 699999999999
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|++++++
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9999543
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=7.4e-19 Score=123.44 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=69.4
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
....++|||+|||+++++++|+++|++|| +|..+.|..+ +++|||||+|++.++|++||+ +++.+|+|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 8999988532 478999999999999999996 69999999999999
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
++.
T Consensus 101 ~a~ 103 (111)
T 2jvr_A 101 RDD 103 (111)
T ss_dssp ESC
T ss_pred ECC
Confidence 984
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=131.03 Aligned_cols=84 Identities=29% Similarity=0.426 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999997 69999999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 996543
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=117.57 Aligned_cols=78 Identities=29% Similarity=0.483 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|||+++|+++|+++|++||.|++|.|.++ +|||||+|.+.++|++||+ +++..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999754 6899999999999999996 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++.+
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 99443
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-18 Score=118.69 Aligned_cols=76 Identities=18% Similarity=0.445 Sum_probs=67.8
Q ss_pred CCCCccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
...+.++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++||+ +++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999883 6899999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
++++.+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999554
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=3.3e-18 Score=119.47 Aligned_cols=72 Identities=28% Similarity=0.552 Sum_probs=66.8
Q ss_pred CCccEEEEcCCCCC-CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 20 TTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
...++|||+|||++ +++++|+++|++||.|++|.| +++||||+|++.++|++||+ +++..|+|+.|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 47899999999999999995 699999999999999
Q ss_pred cc
Q 029737 98 AC 99 (189)
Q Consensus 98 a~ 99 (189)
++
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 94
No 140
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=117.53 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999986 666654 578999999999999999996 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++++
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99543
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.6e-18 Score=120.78 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
....++|||+|||+++|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|.+|++ +++..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999876 4469999999999999999997 699999999999999
Q ss_pred cccCC
Q 029737 98 ACLGV 102 (189)
Q Consensus 98 a~~~~ 102 (189)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 96543
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=1.8e-18 Score=117.88 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCccEEEEcCCCCCCcHHHHH----HHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
+..+.++|||+|||+++++++|+ ++|++||.|.+|.++. +++++|||||+|.+.++|++|++ +++..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45577899999999999999999 9999999999998874 47789999999999999999997 5999999999
Q ss_pred eEEEEcccC
Q 029737 93 ANCNLACLG 101 (189)
Q Consensus 93 i~v~~a~~~ 101 (189)
|+|++++.+
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=7.8e-18 Score=115.26 Aligned_cols=76 Identities=20% Similarity=0.471 Sum_probs=68.2
Q ss_pred CCCCCccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 17 FGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
......++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++||+ +++..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455778999999998 99999999999999999999882 7899999999999999997 699999999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|++++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999843
No 144
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.8e-18 Score=116.70 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=62.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
.+...++|||+|||+++||++|+++|++||.|.+|.|+++ ++|||||+|++.++|+++.. ....+.++.|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEE
Confidence 4557789999999999999999999999999999999874 68999999999999984322 23346799999999
Q ss_pred cccCC
Q 029737 98 ACLGV 102 (189)
Q Consensus 98 a~~~~ 102 (189)
+.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 86543
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=119.90 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=70.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
+...++|||+|||+++++++|+++|++||.|.+|.|+. +++||||+|.+.++|++||+ +++..|+++.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999998864 57899999999999999997 699999999999999
Q ss_pred cccCC
Q 029737 98 ACLGV 102 (189)
Q Consensus 98 a~~~~ 102 (189)
+....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 96543
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=117.93 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=70.5
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
..+.+.++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345577899999999999999999999999988766 3368899999999999999999997 6889999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++.++
T Consensus 86 ~~a~~~ 91 (96)
T 1fjc_A 86 YYTGEK 91 (96)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 999443
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-18 Score=123.41 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=69.4
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECC----HHH----HHHHHH--h-CCCc
Q 029737 23 TKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV--D-AAPV 87 (189)
Q Consensus 23 ~~ifV~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~----~~~----a~~al~--~-~~~~ 87 (189)
++|||+|| |+.+++++|+++|++||+|.+|.++.|++||+++|||||+|.| .++ |.+||. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788876 3 8889
Q ss_pred cCCeeeEEEEcc
Q 029737 88 IDGRRANCNLAC 99 (189)
Q Consensus 88 i~g~~i~v~~a~ 99 (189)
|+|+.|+|++.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999874
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.4e-17 Score=122.90 Aligned_cols=82 Identities=32% Similarity=0.490 Sum_probs=77.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|.+|++ +++..|+|+.|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999997 69999999999999
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 983
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.2e-17 Score=123.34 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEccc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~ 100 (189)
.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|++ +++..+.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999899999999999999999999997 699999999999999854
Q ss_pred C
Q 029737 101 G 101 (189)
Q Consensus 101 ~ 101 (189)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=1.2e-17 Score=128.59 Aligned_cols=82 Identities=22% Similarity=0.467 Sum_probs=77.2
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|.+|++ +++..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 355799999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 655
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=6.5e-18 Score=124.21 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
......++|||+|||+++|+++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.+||+ +++..|+|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34457789999999999999999999999999999999876 58999999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++.++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999543
No 152
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=116.31 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.0
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|++.++|++++.. ...+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45689999999999999999999999999999998764 689999999999999865433 345689999999885
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 153
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=121.04 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=68.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCC---CCcccEEEEEECCHHHHHHHHHhCCCccCCeeeE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~t---g~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~ 94 (189)
.....++|||+|||+++|+++|+++|++||.|. +.++.++.+ ++++|||||+|++.++|++||+.. ..++|+.+.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEE
Confidence 345678999999999999999999999999999 888888877 799999999999999999999754 247888777
Q ss_pred EEEc
Q 029737 95 CNLA 98 (189)
Q Consensus 95 v~~a 98 (189)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7655
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=2e-18 Score=128.01 Aligned_cols=81 Identities=31% Similarity=0.602 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
..++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|+++++..|+|+.|+|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35699999999999999999999999999999999999899999999999999999999999888899999999999955
Q ss_pred C
Q 029737 101 G 101 (189)
Q Consensus 101 ~ 101 (189)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1e-17 Score=124.09 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..++|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++|++ +++..+.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999999999997 69999999999999985
Q ss_pred cC
Q 029737 100 LG 101 (189)
Q Consensus 100 ~~ 101 (189)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=2e-17 Score=123.26 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eee
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRA 93 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g--~~i 93 (189)
..+....+|||+||++.+|+++|+++|++||+|++|.|..++ ++|||||+|++.++|++|++ +++..|.+ +.|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 455677899999999999999999999999999999987542 57899999999999999997 69999965 999
Q ss_pred EEEEcccC
Q 029737 94 NCNLACLG 101 (189)
Q Consensus 94 ~v~~a~~~ 101 (189)
+|++++++
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999665
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=114.32 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=71.1
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEE-EEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
.....++|||+|||+++++++|+++|++||.|.+| .|+.++.++. |||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 33456899999999999999999999999999999 5888876543 9999999999999997 6999999999999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
+++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999654
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-17 Score=111.54 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|++||+ +++..|+++.|+|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 468899999999999999996 59999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++..+
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 99554
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1.8e-17 Score=126.08 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=77.9
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
....++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999999899999999999999999999997 599999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+.++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9554
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=127.58 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=71.7
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEE--------EEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA--------VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v--------~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~ 89 (189)
..+.++|||+|||+++|+++|+++|++||.|..+ .+. .+++++|||||+|.+.++|.+||+ +++..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999988764 332 368899999999999999999997 6999999
Q ss_pred CeeeEEEEcccCCCC
Q 029737 90 GRRANCNLACLGVQR 104 (189)
Q Consensus 90 g~~i~v~~a~~~~~~ 104 (189)
|+.|.|.+++....+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999655433
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=2.7e-17 Score=122.41 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++|+++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++ +++..|+|+.|.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999999899999999999999999999997 6999999999999987
No 162
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=9.9e-18 Score=112.51 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++++++|+++|++| .|.+|.|. +++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456799999999999999999999999 99999884 578999999999999999997 6999999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 163
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=2.9e-17 Score=126.00 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=73.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
..++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|++.++|++||+..+..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999987 48999999999999999999998766799999999998854
Q ss_pred C
Q 029737 101 G 101 (189)
Q Consensus 101 ~ 101 (189)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.1e-17 Score=123.94 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEccc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~~ 100 (189)
+.++|||+|||+++|+++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+. ...++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999985 5689999999888743
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2.3e-17 Score=110.04 Aligned_cols=72 Identities=19% Similarity=0.440 Sum_probs=65.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhc----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCcc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVI 88 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i 88 (189)
.+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+.+++..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999 8 8999988654 7899999999999999996699999
Q ss_pred CCeeeEEEE
Q 029737 89 DGRRANCNL 97 (189)
Q Consensus 89 ~g~~i~v~~ 97 (189)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999998863
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=115.34 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=68.1
Q ss_pred CCCCCCccEEEE--cCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc----
Q 029737 16 QFGDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI---- 88 (189)
Q Consensus 16 ~~~~~~~~~ifV--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i---- 88 (189)
...+.+.++||| +||++++|+++|+++|++||.|.+|.|+. .||||||+|++.++|++|++ +|+.+|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 344556789999 77999999999999999999999998753 27899999999999999997 688887
Q ss_pred -CCeeeEEEEcc
Q 029737 89 -DGRRANCNLAC 99 (189)
Q Consensus 89 -~g~~i~v~~a~ 99 (189)
.++.|.|.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 68899999984
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5.8e-17 Score=116.49 Aligned_cols=84 Identities=17% Similarity=0.359 Sum_probs=70.6
Q ss_pred cCCCCCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccE-EEEEECCHHHHHHHHH-hCCCccCC
Q 029737 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG 90 (189)
Q Consensus 13 ~~~~~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~-afV~F~~~~~a~~al~-~~~~~i~g 90 (189)
........+.-+|||+||++.+|+++|+++|++||.|.+|.|..+ .+|| |||+|++.++|++|++ +++..|.+
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 345556677889999999999999999999999999999988764 3678 9999999999999997 69999988
Q ss_pred --eeeEEEEcccC
Q 029737 91 --RRANCNLACLG 101 (189)
Q Consensus 91 --~~i~v~~a~~~ 101 (189)
+.|+|+++++.
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 89999999654
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=3.1e-17 Score=126.33 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
...++|||+|||+++|+++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+||+ +++..|.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 356899999999999999999999999999999999999899999999999999999999997 6999999999999876
Q ss_pred cc
Q 029737 99 CL 100 (189)
Q Consensus 99 ~~ 100 (189)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=1.2e-16 Score=118.23 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCC--eeeEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRANC 95 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g--~~i~v 95 (189)
....++|||+|||.++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|.+|++ +++..+.| +.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4466899999999999999999999999999999999999889999999999999999999997 69999987 99999
Q ss_pred EEc
Q 029737 96 NLA 98 (189)
Q Consensus 96 ~~a 98 (189)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=5.4e-17 Score=125.79 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..++|||+|||+++|+++|+++|++||.|++|+|++++ +.++|||||+|.+.++|++||+ +|+..|+|+.|+|+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999985 4579999999999999999996 69999999999999996
Q ss_pred cCC
Q 029737 100 LGV 102 (189)
Q Consensus 100 ~~~ 102 (189)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 653
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.1e-17 Score=118.47 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~~~ 101 (189)
++|||+|||+++|+++|+++|++||.|.+|.|+.++. ++++|||||+|.+.++|.+|++ +++..+.++.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999974 7899999999999999999995 6999999999999998443
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.9e-16 Score=116.80 Aligned_cols=79 Identities=25% Similarity=0.457 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCee--eEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR--ANCN 96 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~--i~v~ 96 (189)
...++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+. |.|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456799999999999999999999999999999999999899999999999999999999997 6999999975 7776
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=105.60 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=64.1
Q ss_pred CccE-EEEcCCCCCCcHHH----HHHHHhhc-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 21 TYTK-VFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 21 ~~~~-ifV~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
+..+ |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++ +++..|.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 55899999 599988 34 999999999999999996 69999999999
Q ss_pred EEEEcccCCCC
Q 029737 94 NCNLACLGVQR 104 (189)
Q Consensus 94 ~v~~a~~~~~~ 104 (189)
+|++++.+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999665443
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=3e-16 Score=112.08 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=67.2
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccE-EEEEECCHHHHHHHHH-hCCCccCC--eeeE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~-afV~F~~~~~a~~al~-~~~~~i~g--~~i~ 94 (189)
......|||+||++.+|+++|+++|++||.|++|.|... .|| |||+|++.++|.+|++ +++..|.+ +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 345567899999999999999999999999999998652 276 9999999999999997 69999987 5899
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
|++++++
T Consensus 96 V~~Ak~~ 102 (124)
T 2e5i_A 96 IEYARPT 102 (124)
T ss_dssp EECCSCS
T ss_pred EEEecCC
Confidence 9998655
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=2.1e-16 Score=117.64 Aligned_cols=81 Identities=27% Similarity=0.345 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCC--CcccEEEEEECCHHHHHHHHH-hCCCccC---CeeeE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg--~~~G~afV~F~~~~~a~~al~-~~~~~i~---g~~i~ 94 (189)
+.++|||+|||+++|+++|+++|++||.|.+|.|++++.++ +++|||||+|.+.++|++|++ +++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999876 899999999999999999997 5776654 56677
Q ss_pred EEEcccC
Q 029737 95 CNLACLG 101 (189)
Q Consensus 95 v~~a~~~ 101 (189)
+..+...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776433
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.5e-16 Score=113.24 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
...+.++|||+|| ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 468899999999999999996 69999999999999
Q ss_pred EcccCC
Q 029737 97 LACLGV 102 (189)
Q Consensus 97 ~a~~~~ 102 (189)
++..+.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 996543
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.4e-16 Score=116.46 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---CeeeE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~---g~~i~ 94 (189)
....++|||+|||+++|+++|+++|++||.|.+|.+++++ +++++|||||+|.+.++|.+|++ +++..+. ++.|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 58999999999999999999996 5877665 48999
Q ss_pred EEEc
Q 029737 95 CNLA 98 (189)
Q Consensus 95 v~~a 98 (189)
|+++
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=3.6e-16 Score=125.48 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=74.7
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHH----HHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe
Q 029737 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~ 91 (189)
.+....++|||+|||+++|+++|+ ++|++||.|++|.|++ +++++|||||+|.+.++|++||+ +++..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456678999999999999999977 8999999999999875 58899999999999999999995 699999999
Q ss_pred eeEEEEcccCC
Q 029737 92 RANCNLACLGV 102 (189)
Q Consensus 92 ~i~v~~a~~~~ 102 (189)
.|+|.+++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986543
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=3.5e-16 Score=120.94 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=69.6
Q ss_pred CccEEEEcCCC-CCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
+.++|||+||| +.+|+++|+++|++||.|.+|+|+++ .+|||||+|.+.++|++||+ +++..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999865 37999999999999999997 6999999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=5e-16 Score=115.99 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
.....++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++ +++..|+|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999988765 4578899999999999999999997 69999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99543
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.6e-15 Score=105.27 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCC-----CCcHHHHHHHHhhcCCEeEEEEEecCCC-CCcccEEEEEECCHHHHHHHHH-hCCCccCCee
Q 029737 20 TTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (189)
Q Consensus 20 ~~~~~ifV~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~t-g~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~ 92 (189)
.+++.|+|.||.. +-++++|+++|++||.|.+|.|++++.+ ++++||+||+|.+.++|.+|++ +|+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4677999999962 2378999999999999999999998754 6889999999999999999996 6999999999
Q ss_pred eEEEEccc
Q 029737 93 ANCNLACL 100 (189)
Q Consensus 93 i~v~~a~~ 100 (189)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4.6e-16 Score=125.49 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=74.7
Q ss_pred CCCccEEEEcCCCCC-CcHHHHHHHHhhcCCEeEEEEEecCC-CCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~-tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
....++|||+|||++ +|+++|+++|++||.|.+|.|+.+.. |+.++|||||+|.+.++|.+|+.+++..|.|+.|.|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 346689999999999 99999999999999999999999876 6999999999999999999999669999999999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
++.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99543
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=6.4e-17 Score=120.90 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~ 97 (189)
.+.+.++|||+|||+++|+++|+++|++||.+.. .++.+..+++++|||||+|.+.++|.+||++++..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4567889999999999999999999999987665 334455578899999999999999999998899999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8544
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=3.5e-15 Score=119.83 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999995 69999999999999996
Q ss_pred cCC
Q 029737 100 LGV 102 (189)
Q Consensus 100 ~~~ 102 (189)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 543
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=1.1e-15 Score=120.53 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCccEEEEcCCCCCC---------cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCc
Q 029737 18 GDTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~ 87 (189)
.+...++|||+||+..+ +|++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|++ +++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678899999999998 7999999999999999999985 47899999999999999996 58888
Q ss_pred c------------CCeeeEEEEcccCC
Q 029737 88 I------------DGRRANCNLACLGV 102 (189)
Q Consensus 88 i------------~g~~i~v~~a~~~~ 102 (189)
| .|+.|.|+++....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 8 89999999996543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=3.5e-15 Score=119.72 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEE
Q 029737 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANC 95 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v 95 (189)
.....++|||+|||+++|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|.+||+ +++..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34466899999999999999999999999999999998654 5899999999999999997 6999999 999999
Q ss_pred EEcc
Q 029737 96 NLAC 99 (189)
Q Consensus 96 ~~a~ 99 (189)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9983
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.4e-15 Score=118.97 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 20 TTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 20 ~~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
.+.++|||+|||+ ++++++|+++|++||.|.+|.|++++ +|||||+|.+.++|++||+ +++..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999998875 7899999999999999997 699999999999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=2.2e-15 Score=121.07 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=76.8
Q ss_pred CCCCccEEEEcCCCCCC-cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEE
Q 029737 18 GDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v 95 (189)
.....++|||+|||+++ |+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+|++ +++..|.|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 69999999999999999999997 6999999999999
Q ss_pred EEcccCC
Q 029737 96 NLACLGV 102 (189)
Q Consensus 96 ~~a~~~~ 102 (189)
.++.++.
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9996554
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=3.6e-15 Score=120.23 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEE
Q 029737 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (189)
Q Consensus 17 ~~~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~ 96 (189)
..+...++|||+|||+++|+++|+++|++||.|.+|.|++++.+ ++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34567889999999999999999999999999999999998743 5899999999999999999889999999999998
Q ss_pred Ecc
Q 029737 97 LAC 99 (189)
Q Consensus 97 ~a~ 99 (189)
++.
T Consensus 114 ~~~ 116 (292)
T 2ghp_A 114 HLT 116 (292)
T ss_dssp ECC
T ss_pred ECC
Confidence 863
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=6.8e-15 Score=109.30 Aligned_cols=73 Identities=18% Similarity=0.423 Sum_probs=65.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhc----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccC
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~ 89 (189)
+.++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|++|+++++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 67777664 3478999999999999999977999999
Q ss_pred CeeeEEEEcc
Q 029737 90 GRRANCNLAC 99 (189)
Q Consensus 90 g~~i~v~~a~ 99 (189)
|+.|.|.++.
T Consensus 77 g~~i~v~~~~ 86 (172)
T 2g4b_A 77 GQSLKIRRPH 86 (172)
T ss_dssp TEECEEECCS
T ss_pred CceeeecCCc
Confidence 9999998863
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-14 Score=99.88 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=68.2
Q ss_pred CCCCccEEEEcCCCCCCc-----------HHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCC
Q 029737 18 GDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA 85 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~ 85 (189)
.....++|+|.||....+ +++|+++|++||.|++|.| .++ .++|||||+|.+.++|++||+ +++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445778999999944332 6899999999999999966 554 379999999999999999996 699
Q ss_pred CccCCeeeEEEEcccCC
Q 029737 86 PVIDGRRANCNLACLGV 102 (189)
Q Consensus 86 ~~i~g~~i~v~~a~~~~ 102 (189)
..|+|+.|.|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999995543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=114.86 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=69.9
Q ss_pred CccEEEEcCCCC-CCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEc
Q 029737 21 TYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (189)
Q Consensus 21 ~~~~ifV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a 98 (189)
..++|||+|||+ ++++++|+++|++||.|.+|.|++++ +|||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 7899999999999999997 6999999999999998
Q ss_pred ccC
Q 029737 99 CLG 101 (189)
Q Consensus 99 ~~~ 101 (189)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 193
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5e-14 Score=96.86 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCccEEEEcCCC-------CCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 029737 19 DTTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (189)
Q Consensus 19 ~~~~~~ifV~nLp-------~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~ 91 (189)
+...++|-|.-.. .++++++|+++|++||.|++|.|+ ++++|||||+|++.++|++||+. ...+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCC
Confidence 3345677777544 468999999999999999999987 35799999999999999999986 3457899
Q ss_pred eeEEEEcccCC
Q 029737 92 RANCNLACLGV 102 (189)
Q Consensus 92 ~i~v~~a~~~~ 102 (189)
.|+|++++.+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999985543
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=9.3e-15 Score=110.92 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=65.1
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhc----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccC
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~ 89 (189)
..++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.+.++|++||++++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5666655 44689999999999999999977999999
Q ss_pred CeeeEEEEcccC
Q 029737 90 GRRANCNLACLG 101 (189)
Q Consensus 90 g~~i~v~~a~~~ 101 (189)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999987443
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.4e-14 Score=115.57 Aligned_cols=80 Identities=29% Similarity=0.316 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh--CCCccC---CeeeEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPVID---GRRANC 95 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~--~~~~i~---g~~i~v 95 (189)
+.++|||+|||+.+|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+||+. ++..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4579999999999999999999999999999999999 4899999999999999999999974 444444 899999
Q ss_pred EEcccC
Q 029737 96 NLACLG 101 (189)
Q Consensus 96 ~~a~~~ 101 (189)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998654
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=2.4e-14 Score=111.99 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEEEE
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCNL 97 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v~~ 97 (189)
+.++|||+|||+++++++|+++|++|| .|.+|.|+.+ .+|||||+|.+.++|.+||+ +++..|. |+.|+|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 37899999999999999997 6999999 99999999
Q ss_pred cccC
Q 029737 98 ACLG 101 (189)
Q Consensus 98 a~~~ 101 (189)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9653
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=7.9e-15 Score=113.29 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCE--eEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCe----ee
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR----RA 93 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i--~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~----~i 93 (189)
+.++|||+|||+++||++|+++|++||.| .+|+++.++ +..+|||||+|++.++|.+||. +|+..|.+. .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999998 899988775 5567999999999999999996 699998876 45
Q ss_pred EEEEc
Q 029737 94 NCNLA 98 (189)
Q Consensus 94 ~v~~a 98 (189)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 55554
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=110.54 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC-CeeeEEE
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~-g~~i~v~ 96 (189)
.+.++|||+|||+++++++|+++|++|| .|.+|.|+.+ .+|||||+|.+.++|.+|++ +++..|. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999998654 27899999999999999997 6999999 9999999
Q ss_pred EcccC
Q 029737 97 LACLG 101 (189)
Q Consensus 97 ~a~~~ 101 (189)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98543
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.1e-14 Score=114.46 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEE
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~ 97 (189)
..+.++|||+|||+++|+++|+++|++||.|.+|.|.+ ++|||||+|.+.++|.+|++ +++..|.++.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35667999999999999999999999999999999864 37899999999999999997 699999999999998
Q ss_pred ccc
Q 029737 98 ACL 100 (189)
Q Consensus 98 a~~ 100 (189)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=3.7e-14 Score=98.38 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=69.5
Q ss_pred CCccEEEEcCC--CCCCc--------HHHHHHHHhhcCCEeEEEEEecCCC--CCcccEEEEEECCHHHHHHHHH-hCCC
Q 029737 20 TTYTKVFVGGL--AWETQ--------KETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAP 86 (189)
Q Consensus 20 ~~~~~ifV~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~t--g~~~G~afV~F~~~~~a~~al~-~~~~ 86 (189)
.+++.|.|.|+ |.++. +++|++.|++||.|++|.|++++.+ ++++||+||+|++.++|.+|++ +|+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778999998 33443 4789999999999999999998765 3689999999999999999996 6999
Q ss_pred ccCCeeeEEEEccc
Q 029737 87 VIDGRRANCNLACL 100 (189)
Q Consensus 87 ~i~g~~i~v~~a~~ 100 (189)
.++||.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998743
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=7.6e-15 Score=101.68 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=62.6
Q ss_pred EcCCCCCCcHHHHHHHH------------hhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeee
Q 029737 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (189)
Q Consensus 27 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i 93 (189)
+.+|++.+++++|+++| ++||.|.+|.|++++. ++++|||||+|.+.++|.+|++ +|+..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677778888777766 9999999999998874 7899999999999999999996 69999999999
Q ss_pred EEEEc
Q 029737 94 NCNLA 98 (189)
Q Consensus 94 ~v~~a 98 (189)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1.4e-13 Score=97.47 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=69.4
Q ss_pred CccEEEEcCCC--CCC---cHHHHHHHHhhcCCEeEEEEEecCC----CCCcccEEEEEECCHHHHHHHHH-hCCCccCC
Q 029737 21 TYTKVFVGGLA--WET---QKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (189)
Q Consensus 21 ~~~~ifV~nLp--~~~---te~~l~~~F~~~G~i~~v~i~~~~~----tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g 90 (189)
+++.|+|.|+- .++ -++||++.|++||.|.+|.|++++. +++++||+||+|++.++|.+|++ +|+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 222 3789999999999999999999865 45778999999999999999996 69999999
Q ss_pred eeeEEEEccc
Q 029737 91 RRANCNLACL 100 (189)
Q Consensus 91 ~~i~v~~a~~ 100 (189)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999843
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.7e-13 Score=111.30 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=63.9
Q ss_pred CCCCCCccEEEEcC--CCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccC---
Q 029737 16 QFGDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--- 89 (189)
Q Consensus 16 ~~~~~~~~~ifV~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~--- 89 (189)
...+.++++|||+| |+..+||++|+++|++||+|++|.+.. +||||||+|++.++|++||+ +|+.++.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34456778999999 588999999999999999999987743 47899999999999999997 5888762
Q ss_pred Ce--eeEEEEc
Q 029737 90 GR--RANCNLA 98 (189)
Q Consensus 90 g~--~i~v~~a 98 (189)
|+ .|.|.++
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 44 5667666
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.6e-11 Score=86.24 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCccEEEEcCCC--CC--------CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCcc
Q 029737 20 TTYTKVFVGGLA--WE--------TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (189)
Q Consensus 20 ~~~~~ifV~nLp--~~--------~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i 88 (189)
.+++.|.+.|+= .+ --++||++.|++||.|++|.|.++. .+||+||+|++.++|.+|++ +|+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356678888872 22 1246889999999999999986653 58999999999999999996 699999
Q ss_pred CCeeeEEEEccc
Q 029737 89 DGRRANCNLACL 100 (189)
Q Consensus 89 ~g~~i~v~~a~~ 100 (189)
+|+.|.|+++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.4e-11 Score=85.93 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCCccEEEEcCCCCC-CcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECC-HHHHHHHHHh---CCCccCCee
Q 029737 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACVD---AAPVIDGRR 92 (189)
Q Consensus 18 ~~~~~~~ifV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~-~~~a~~al~~---~~~~i~g~~ 92 (189)
.-.+.+-|||+||+++ +++++|+++|++||+|.+|.+.++.. .|||+|.+ .++|..|++. .+.+|++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3457789999999999 99999999999999999999988865 59999999 8899999964 466799998
Q ss_pred eEEEEcc
Q 029737 93 ANCNLAC 99 (189)
Q Consensus 93 i~v~~a~ 99 (189)
+.+++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=80.75 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=61.3
Q ss_pred CccEEEEcCCC----CCCcH----HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCee
Q 029737 21 TYTKVFVGGLA----WETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (189)
Q Consensus 21 ~~~~ifV~nLp----~~~te----~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~ 92 (189)
+.-+|+|.-++ .++.+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||++++..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 34478887766 23333 6789999999999999998773 89999999999999999999999999
Q ss_pred eEEEEcccC
Q 029737 93 ANCNLACLG 101 (189)
Q Consensus 93 i~v~~a~~~ 101 (189)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.7e-10 Score=77.55 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=60.5
Q ss_pred CccEEEEcCCCCC-----CcH----HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 029737 21 TYTKVFVGGLAWE-----TQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (189)
Q Consensus 21 ~~~~ifV~nLp~~-----~te----~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~ 91 (189)
+.-+|+|.-++.+ +.+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||++++.+++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 3458999988643 322 5688999999999999999874 9999999999999999999999999
Q ss_pred eeEEEEcc
Q 029737 92 RANCNLAC 99 (189)
Q Consensus 92 ~i~v~~a~ 99 (189)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998873
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=2.4e-09 Score=82.98 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHhhcCCEeEEEEEecC----CCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEEEcc
Q 029737 33 ETQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (189)
Q Consensus 33 ~~te~~l~~~F~~~G~i~~v~i~~~~----~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~~a~ 99 (189)
+-.+++|++.|++||.|.++.|+++. ++++++|++||+|.+.++|.+|++ +++..++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34578999999999999999998554 455899999999999999999997 69999999999999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.7e-07 Score=62.64 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhhc-----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH-HhCCCccCCee
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRR 92 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al-~~~~~~i~g~~ 92 (189)
....++|-+-+||..++++.|+.+++++ |.|+.|.+..|.. -|+|+|.|...|.+|. .+++.+|+|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3446788899999999999999999999 9999999988754 7999999999998888 67999999999
Q ss_pred eEEEE
Q 029737 93 ANCNL 97 (189)
Q Consensus 93 i~v~~ 97 (189)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99854
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.1e-05 Score=53.32 Aligned_cols=72 Identities=28% Similarity=0.326 Sum_probs=61.0
Q ss_pred CCCccEEEEcCCCCCCcHHHHHHHHhh-c----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeee
Q 029737 19 DTTYTKVFVGGLAWETQKETMEKYFEQ-F----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (189)
Q Consensus 19 ~~~~~~ifV~nLp~~~te~~l~~~F~~-~----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i 93 (189)
..-.++|.|.|||+.+.++.|+-+|+. - |+|++++... .-|+|+|.+.+.|++.|+...+.|.+..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345579999999999999999999976 1 4788887743 37899999999999999988889999999
Q ss_pred EEEEc
Q 029737 94 NCNLA 98 (189)
Q Consensus 94 ~v~~a 98 (189)
.|.-.
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 98654
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.77 E-value=0.00011 Score=49.38 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=46.1
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
...+-++| .+|+++...||.++|+.||. ..|+++.|. .|||.|.+++.|..|+..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34455666 99999999999999999995 467777774 799999999999999873
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.75 E-value=0.00015 Score=48.36 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCC--cccEEEEEECCHHHHHHHHHh-CCCccC
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVD-AAPVID 89 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~--~~G~afV~F~~~~~a~~al~~-~~~~i~ 89 (189)
++|.|++||+.+||+++.+.+....++.....+..+.+.+ .-.-|||.|.+.+++....+. +++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 6899999999999999999999988888877776654433 235799999999999888864 777653
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=0.0005 Score=47.90 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=57.5
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCC-eeeEEEEc
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCNLA 98 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g-~~i~v~~a 98 (189)
...+-|.|-++|+.. .+.|..+|++||+|.+..... ....-.|.|+++.+|++||.+|+..|++ ..|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 356789999999886 466777899999999887621 2348999999999999999999999985 55666554
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00032 Score=47.69 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=59.8
Q ss_pred CccEEEEcCCCCCC-c----HHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeE
Q 029737 21 TYTKVFVGGLAWET-Q----KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (189)
Q Consensus 21 ~~~~ifV~nLp~~~-t----e~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~ 94 (189)
-.++|+|.||+.++ + .+.++++|..|.++....+.+.- .-..|.|.+.++|.+|-. +++..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34689999998866 2 26789999999988887776542 256899999999999985 588899999999
Q ss_pred EEEccc
Q 029737 95 CNLACL 100 (189)
Q Consensus 95 v~~a~~ 100 (189)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999863
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00016 Score=48.58 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
+-++| ++|+++...||.++|+.|| -..|+++.|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34555 9999999999999999999 4578888774 799999999999999973
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.86 E-value=0.00056 Score=58.40 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhC
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~ 84 (189)
.++|||. +|..+++.+|.+.|++||.|.++.+-.++ .-|+.|||.+.+++.+++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4799998 79999999999999999999998775542 359999999999999887543
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.80 E-value=0.00098 Score=44.73 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=49.3
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCC--cccEEEEEECCHHHHHHHHHh-CCCcc
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVD-AAPVI 88 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~--~~G~afV~F~~~~~a~~al~~-~~~~i 88 (189)
.+-+|.|+.||+.+||+++.+.+...-++.....+..+.+-+ .-.-|||.|.+.+++....+. ++..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 456899999999999999998887765554444433333222 125689999999999988875 76654
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.65 E-value=0.0027 Score=44.84 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=54.5
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeE-EEEEec--------CCCCC-----cccEEEEEECCHHHHHHHHHhCCCc
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITD--------KATGR-----SKGYGFVTFREPEAAMKACVDAAPV 87 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~--------~~tg~-----~~G~afV~F~~~~~a~~al~~~~~~ 87 (189)
..-|.|-+.|++.+ ..+-+.|++||.|.+ +...+. +.+.+ ....-.|+|++..+|.+||..|+..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 35688889987765 556667999999876 222110 00011 2457799999999999999999999
Q ss_pred cCCeeeEEEEcc
Q 029737 88 IDGRRANCNLAC 99 (189)
Q Consensus 88 i~g~~i~v~~a~ 99 (189)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888887654
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.52 E-value=0.015 Score=41.77 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=25.8
Q ss_pred EEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 51 ~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
.+.|.++. .+++||+||+|.+.++|++|++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHh
Confidence 45677775 36899999999999999999964
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.70 E-value=0.061 Score=38.20 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=34.0
Q ss_pred CCcccEEEEEECCHHHHHHHHH-h-CCCccCCeeeEEEEccc
Q 029737 61 GRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRRANCNLACL 100 (189)
Q Consensus 61 g~~~G~afV~F~~~~~a~~al~-~-~~~~i~g~~i~v~~a~~ 100 (189)
.+.+|+++|+|.+.++|++|++ + ++..++| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4679999999999999999995 6 8889999 899987743
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.67 E-value=0.33 Score=41.88 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=44.0
Q ss_pred CccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 21 ~~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
..+-++|+ +|..+...+|.+.|+.||. .+|.++.+. .|||.|.+.+.|..++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 34566666 9999999999999999995 467666553 799999999999999864
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=82.02 E-value=0.17 Score=34.27 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCccEEEEcCCCCCCcHHH
Q 029737 20 TTYTKVFVGGLAWETQKET 38 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~ 38 (189)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999864
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=68.84 E-value=11 Score=24.91 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=43.1
Q ss_pred CCCCCCcHHHHHHHH-hhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEcc
Q 029737 29 GLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (189)
Q Consensus 29 nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a~ 99 (189)
.++..+.-+||.... ..||.-.++.+. +. -..|-..+.++..+||++......-+.++|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 367788888887666 469988888776 32 3678999999999999862222333445554443
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.69 E-value=19 Score=21.88 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=37.9
Q ss_pred EEEEcC-CCCCCcHHHHHHHHhhcC-----CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH-hCCCccCCeeeEEE
Q 029737 24 KVFVGG-LAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (189)
Q Consensus 24 ~ifV~n-Lp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~-~~~~~i~g~~i~v~ 96 (189)
+|||.. --..++..+|-.++..-+ .|-.|+|..+ |.||+-.... +..+++ +....+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 455531 134566777877776443 4556666432 8899987544 566665 57778999998887
Q ss_pred Ec
Q 029737 97 LA 98 (189)
Q Consensus 97 ~a 98 (189)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.50 E-value=57 Score=23.74 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=38.6
Q ss_pred EEEEcCCCCC---------CcHHHHHHHH--hhcCCEeEEEEEecCCCCCcccEEEEEEC-CHHHHHHHHHh
Q 029737 24 KVFVGGLAWE---------TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (189)
Q Consensus 24 ~ifV~nLp~~---------~te~~l~~~F--~~~G~i~~v~i~~~~~tg~~~G~afV~F~-~~~~a~~al~~ 83 (189)
.+.|-|+|.. .+..+|++.| +.|..++ |+.+.++. -+.|++.|+|. +..-...|+++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 4556676651 3347889977 8898754 55555543 37899999997 66677777754
No 226
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=43.12 E-value=36 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.3
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (189)
+|++|+|..-...++.++||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668899999999975
No 227
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=39.36 E-value=59 Score=26.62 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=40.5
Q ss_pred EEEEcCCCCCC----cHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCe
Q 029737 24 KVFVGGLAWET----QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (189)
Q Consensus 24 ~ifV~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~ 91 (189)
--+||||..-. ....+.++..+||.|..+.+.. .-+|...+.+.++.++..+...+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34788876432 2466778888999998887632 34677789999999886654444443
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=38.99 E-value=4.1 Score=28.98 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=16.1
Q ss_pred HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEEC
Q 029737 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (189)
Q Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~ 72 (189)
+|+.++|...|.|++.. + .+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 45566666667665542 2 4789999875
No 229
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=38.24 E-value=45 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.2
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (189)
+|++|+|..-...++.++||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766568899999999975
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.84 E-value=81 Score=20.05 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=29.3
Q ss_pred cHHHHHHHHh----hcC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 35 QKETMEKYFE----QFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 35 te~~l~~~F~----~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
.|+.+.+.+. ..+ +|.++.++. ...||-||+++..++...+|+.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHC
Confidence 4555555443 223 355655543 2789999999999988888864
No 231
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.72 E-value=50 Score=21.97 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.8
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (189)
+|++|+|..-...++.++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887766668899999999975
No 232
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=34.92 E-value=94 Score=20.28 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=37.3
Q ss_pred CCCCCCcHHHHHHHH-hhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 29 GLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 29 nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
-++.-+.-++|+... ..||.-.++.+..+ .-.|-..+.++..+||++
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvel 82 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVEL 82 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHH
Confidence 467778888887766 46999888887643 357889999999999986
No 233
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=34.60 E-value=97 Score=20.33 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhh-cC---CEeEE-EEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FG---EILEA-VVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G---~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
.+.+..+|++.+.+ |+ ++..| .+.+.--.+++.|||.| |++.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56788999888865 44 23333 34444344677888865 77777766643
No 234
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=33.36 E-value=1e+02 Score=20.26 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHhh-cC---CEeEE-EEEecCCCCCcccEEEEEECCHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FG---EILEA-VVITDKATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G---~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~ 79 (189)
.+.+..+|++.+.+ |+ ++..| .+.+.--.+++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788999888864 44 23333 34444444677888865 777777655
No 235
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=31.76 E-value=1e+02 Score=19.81 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred CCCCCCcHHHHHHHH-hhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCCccCCeeeEEEEc
Q 029737 29 GLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (189)
Q Consensus 29 nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~~i~g~~i~v~~a 98 (189)
-++.-+.-++|+... ..||.-.++.+..+ .-.|-..+.++..+||+.......-+.++|-+.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 356778878887666 46998888877633 246888999999999986333334445555554
No 236
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=31.35 E-value=1.2e+02 Score=20.20 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHhh-cCC---EeEEE-EEecCCCCCcccEEEEEECCHHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FGE---ILEAV-VITDKATGRSKGYGFVTFREPEAAMKA 80 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G~---i~~v~-i~~~~~tg~~~G~afV~F~~~~~a~~a 80 (189)
.+.+..+|++.+.+ |+. +..|. +.+.--.+++.|||.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46778899888864 542 23332 3333334667889865 7888877654
No 237
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.41 E-value=52 Score=25.49 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAV 53 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~ 53 (189)
.-+.|+|||+.++..-|..++.. ..+....
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 46799999999999999999977 5554443
No 238
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.34 E-value=27 Score=22.99 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHhh-cCCEeEEEEEec----CCCCCcccEEEEEECCHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FGEILEAVVITD----KATGRSKGYGFVTFREPEAAMK 79 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G~i~~v~i~~~----~~tg~~~G~afV~F~~~~~a~~ 79 (189)
.+.+..+|++.+.+ |+.-.++.++.. --.+++.|||.| |++.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46778888888864 443222222222 223566788865 666555544
No 239
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=29.06 E-value=98 Score=22.10 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHhhcCCEe---EEEEEecCCCCCcccEEEE
Q 029737 33 ETQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFV 69 (189)
Q Consensus 33 ~~te~~l~~~F~~~G~i~---~v~i~~~~~tg~~~G~afV 69 (189)
..|+++|+++-.+.|++. ++.+..+.++|+.+.++|-
T Consensus 2 ~~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 2 LLTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred ccCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 368999999999999764 4455555447998888875
No 240
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.49 E-value=89 Score=18.01 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHhCCC
Q 029737 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (189)
Q Consensus 22 ~~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~~~~ 86 (189)
..++.|.++.=.-=...|++.+.+ -.|..+.+-.. .+-+.|+|.+.+....+|+..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 356888888766567888999988 77877776332 34677888867777777776543
No 241
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.44 E-value=56 Score=28.77 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHHh----hcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHH
Q 029737 30 LAWETQKETMEKYFE----QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 30 Lp~~~te~~l~~~F~----~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~ 82 (189)
.+.+.+--||..+|- .+|.|+++.|...+. ...+.++++.|.+.+++.+++.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~ 406 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLR 406 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHH
Confidence 444455457888882 578899887765543 3356688999999999999885
No 242
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.80 E-value=1.2e+02 Score=19.25 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=37.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
-|+-.++...+..+|++.+++ |+ .|..|..+..+. + .--|||.+...++|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHH
Confidence 444456889999999999976 66 577776655432 2 235999998776665543
No 243
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=27.12 E-value=1e+02 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred CCCCCCcHHHHHHHH-hhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 29 GLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 29 nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
-++.-+.-++|+... ..||.-.++.+..+ .-.|-..+.++..+||++
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvel 93 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDI 93 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHH
Confidence 357778888887766 46998888877643 246888999999999986
No 244
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.83 E-value=27 Score=27.22 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=24.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEEEEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVI 55 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v~i~ 55 (189)
.-+.|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 357899999999999999999754445544433
No 245
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=26.43 E-value=42 Score=16.09 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=10.3
Q ss_pred cHHHHHHHHhhc
Q 029737 35 QKETMEKYFEQF 46 (189)
Q Consensus 35 te~~l~~~F~~~ 46 (189)
.|.+|++|.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 588999999887
No 246
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=25.12 E-value=43 Score=16.99 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=12.7
Q ss_pred CCccEEEEcCCCCCCcHHHHHHHH
Q 029737 20 TTYTKVFVGGLAWETQKETMEKYF 43 (189)
Q Consensus 20 ~~~~~ifV~nLp~~~te~~l~~~F 43 (189)
.+.++|||++-| ++|+.+-
T Consensus 3 gqvrtiwvggtp-----eelkklk 21 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLK 21 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHH
Confidence 456889998755 5555544
No 247
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.81 E-value=1.8e+02 Score=20.50 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHhh-cCC---EeEEE-EEecCCCCCcccEEEEEECCHHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FGE---ILEAV-VITDKATGRSKGYGFVTFREPEAAMKA 80 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G~---i~~v~-i~~~~~tg~~~G~afV~F~~~~~a~~a 80 (189)
.+++..||++.+.+ |+. +..|. |.+.--.+++.|||.| |++.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899988865 552 23332 3333333567788875 7787777654
No 248
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.15 E-value=43 Score=20.37 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.8
Q ss_pred ccEEEEEECCH
Q 029737 64 KGYGFVTFREP 74 (189)
Q Consensus 64 ~G~afV~F~~~ 74 (189)
+..|||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999864
No 249
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.04 E-value=1.8e+02 Score=20.12 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHhh-cC---CEeEEE-EEecCCCCCcccEEEEEECCHHHHHHH
Q 029737 32 WETQKETMEKYFEQ-FG---EILEAV-VITDKATGRSKGYGFVTFREPEAAMKA 80 (189)
Q Consensus 32 ~~~te~~l~~~F~~-~G---~i~~v~-i~~~~~tg~~~G~afV~F~~~~~a~~a 80 (189)
.+++..||++.+.+ |+ ++..|. |.+.--.+++.|||.| |++.+.+.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 36789999999965 55 233333 4444334667888875 7787776653
No 250
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.64 E-value=21 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCEeEEEE
Q 029737 25 VFVGGLAWETQKETMEKYFEQFGEILEAVV 54 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~~G~i~~v~i 54 (189)
..|+|||+.++...|..+++....+..+.+
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 489999999999999999976555554443
No 251
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=23.56 E-value=1.6e+02 Score=19.22 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 029737 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (189)
Q Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al 81 (189)
-+|.+.+...| |.+-.|..+.++ ..-|++++..+ +...+++
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d-~~~~~~~ 67 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES-EERWNAV 67 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC-HHHHHHG
T ss_pred HHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC-HHhHHhc
Confidence 34666777887 677777777432 23599999988 4434443
No 252
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.36 E-value=1.6e+02 Score=19.29 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=23.8
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHHh
Q 029737 48 EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (189)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~al~~ 83 (189)
.|.++-.+ + ..+||-|||=.+..++..||+-
T Consensus 40 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~g 70 (106)
T 3h7h_B 40 QIKSVVAP-E----HVKGYIYVEAYKQTHVKQAIEG 70 (106)
T ss_dssp CCCEEEEC-T----TCCSEEEEEESSHHHHHHHHTT
T ss_pred ceEEEEec-C----CCceEEEEEeCCHHHHHHHHhc
Confidence 36666443 2 2589999999999999999964
No 253
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=23.31 E-value=1.5e+02 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=16.7
Q ss_pred cccEEEEEECCHHHHHHHHH
Q 029737 63 SKGYGFVTFREPEAAMKACV 82 (189)
Q Consensus 63 ~~G~afV~F~~~~~a~~al~ 82 (189)
......|+|.+.+.|.+...
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45688999999999998874
No 254
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.18 E-value=71 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCEeEE
Q 029737 24 KVFVGGLAWETQKETMEKYFEQFGEILEA 52 (189)
Q Consensus 24 ~ifV~nLp~~~te~~l~~~F~~~G~i~~v 52 (189)
-+.|+|||+.++...|..++...-.+..+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 58899999999999888888643334333
No 255
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.31 E-value=40 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=9.6
Q ss_pred cHHHHHHHHhhcC
Q 029737 35 QKETMEKYFEQFG 47 (189)
Q Consensus 35 te~~l~~~F~~~G 47 (189)
+...|+++|.+||
T Consensus 89 DI~~ire~fqKYG 101 (101)
T 4aj5_1 89 DIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcC
Confidence 3467899999997
No 256
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.26 E-value=70 Score=24.21 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=22.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCEeEE
Q 029737 23 TKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (189)
Q Consensus 23 ~~ifV~nLp~~~te~~l~~~F~~~G~i~~v 52 (189)
.-+.|+|||+.++..-|..++.....+...
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 358899999999999999998754333333
No 257
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.08 E-value=1.9e+02 Score=20.19 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=35.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHH
Q 029737 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (189)
Q Consensus 25 ifV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~a 80 (189)
-|+--++...+..+|++.+++ |+ .|..|..+.-+. + .--|||.+....+|...
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDI 135 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHH
Confidence 444456888999999988876 66 577777655442 2 22599999766554443
Done!