Query 029738
Match_columns 189
No_of_seqs 181 out of 1389
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02371 phosphoglucosamine mu 100.0 3E-29 6.5E-34 237.1 17.5 134 52-189 46-179 (583)
2 PF02878 PGM_PMM_I: Phosphoglu 100.0 1.2E-28 2.5E-33 192.9 10.0 102 72-189 1-102 (137)
3 PRK14323 glmM phosphoglucosami 99.9 8.6E-27 1.9E-31 212.7 11.8 102 72-189 3-104 (440)
4 PRK14324 glmM phosphoglucosami 99.9 1.7E-26 3.6E-31 211.6 12.1 100 73-189 2-101 (446)
5 cd05802 GlmM GlmM is a bacteri 99.9 2.7E-26 5.9E-31 208.8 11.9 99 74-189 1-99 (434)
6 cd03089 PMM_PGM The phosphoman 99.9 3E-26 6.6E-31 209.0 12.3 98 74-189 1-98 (443)
7 PRK14320 glmM phosphoglucosami 99.9 2.9E-26 6.4E-31 209.5 11.9 101 73-189 3-103 (443)
8 PRK14317 glmM phosphoglucosami 99.9 3.4E-26 7.3E-31 210.4 12.3 103 71-189 15-117 (465)
9 PRK14316 glmM phosphoglucosami 99.9 3.2E-26 6.9E-31 209.1 11.7 101 73-189 2-102 (448)
10 PRK14315 glmM phosphoglucosami 99.9 3.3E-26 7.1E-31 209.4 11.6 101 72-189 3-104 (448)
11 PRK15414 phosphomannomutase Cp 99.9 4.4E-26 9.5E-31 209.4 11.3 96 73-189 5-100 (456)
12 PRK14314 glmM phosphoglucosami 99.9 5.7E-26 1.2E-30 208.0 11.7 103 71-189 2-104 (450)
13 PRK14318 glmM phosphoglucosami 99.9 5.6E-26 1.2E-30 207.9 11.6 104 73-189 3-106 (448)
14 cd05805 MPG1_transferase GTP-m 99.9 3E-26 6.5E-31 208.9 9.5 96 74-189 1-96 (441)
15 COG1109 {ManB} Phosphomannomut 99.9 7.7E-26 1.7E-30 208.3 11.6 100 72-189 7-106 (464)
16 PRK10887 glmM phosphoglucosami 99.9 1.2E-25 2.5E-30 205.5 11.9 101 72-189 1-101 (443)
17 cd05803 PGM_like4 This PGM-lik 99.9 1.3E-25 2.8E-30 205.2 12.2 99 74-189 1-99 (445)
18 TIGR01455 glmM phosphoglucosam 99.9 2E-25 4.3E-30 203.9 12.1 100 75-189 1-100 (443)
19 PRK14321 glmM phosphoglucosami 99.9 1.6E-25 3.5E-30 205.1 10.5 96 73-189 3-98 (449)
20 PRK14322 glmM phosphoglucosami 99.9 1.4E-25 3.1E-30 204.2 9.3 95 73-189 4-98 (429)
21 cd05800 PGM_like2 This PGM-lik 99.9 3.7E-25 8.1E-30 202.6 11.2 100 74-189 2-102 (461)
22 PRK09542 manB phosphomannomuta 99.9 6.6E-25 1.4E-29 200.9 11.8 96 75-189 1-96 (445)
23 cd03087 PGM_like1 This archaea 99.9 5.2E-25 1.1E-29 200.5 10.8 94 74-189 1-94 (439)
24 PRK14319 glmM phosphoglucosami 99.9 8E-25 1.7E-29 199.4 10.5 94 73-189 2-95 (430)
25 PTZ00150 phosphoglucomutase-2- 99.9 1.6E-24 3.4E-29 204.9 10.8 107 73-189 45-152 (584)
26 PLN02307 phosphoglucomutase 99.9 1.9E-24 4.2E-29 204.6 11.4 102 72-189 22-129 (579)
27 cd03085 PGM1 Phosphoglucomutas 99.9 2.2E-24 4.9E-29 202.9 11.8 101 73-189 11-114 (548)
28 cd03088 ManB ManB is a bacteri 99.9 4.5E-24 9.8E-29 196.0 12.3 97 74-189 1-97 (459)
29 PRK07564 phosphoglucomutase; V 99.9 5.5E-24 1.2E-28 199.6 11.1 101 73-189 38-146 (543)
30 TIGR01132 pgm phosphoglucomuta 99.9 5.5E-24 1.2E-28 199.6 11.0 102 72-189 38-147 (543)
31 cd05799 PGM2 This CD includes 99.9 6.4E-24 1.4E-28 195.8 10.9 105 74-189 3-108 (487)
32 cd05801 PGM_like3 This bacteri 99.9 4.2E-23 9.1E-28 192.7 10.2 102 72-189 20-130 (522)
33 KOG1220 Phosphoglucomutase/pho 99.8 2.6E-21 5.7E-26 181.1 9.7 103 75-189 62-165 (607)
34 COG0033 Pgm Phosphoglucomutase 99.5 4.8E-14 1E-18 129.7 10.3 104 72-189 15-124 (524)
35 KOG0625 Phosphoglucomutase [Ca 98.9 3.8E-09 8.2E-14 97.3 7.9 98 76-189 19-120 (558)
36 cd03086 PGM3 PGM3 (phosphogluc 98.8 5.6E-09 1.2E-13 98.3 6.8 55 124-180 101-155 (513)
37 PLN02895 phosphoacetylglucosam 98.8 5.2E-09 1.1E-13 99.6 6.7 48 125-172 127-174 (562)
38 PTZ00302 N-acetylglucosamine-p 98.8 1E-08 2.2E-13 98.1 6.8 48 125-172 152-200 (585)
39 KOG2537 Phosphoglucomutase/pho 97.5 0.00012 2.6E-09 69.0 4.1 67 103-173 106-172 (539)
40 cd03084 phosphohexomutase The 96.3 0.0024 5.1E-08 57.0 2.4 30 74-110 1-30 (355)
41 PLN02895 phosphoacetylglucosam 95.9 0.01 2.2E-07 57.2 4.8 38 142-189 31-69 (562)
42 PTZ00302 N-acetylglucosamine-p 91.0 0.13 2.7E-06 50.0 1.9 12 178-189 75-86 (585)
43 PF02502 LacAB_rpiB: Ribose/Ga 90.6 1 2.3E-05 35.9 6.6 59 127-187 1-66 (140)
44 PTZ00215 ribose 5-phosphate is 90.4 1.2 2.7E-05 36.1 6.9 60 126-187 3-71 (151)
45 TIGR01119 lacB galactose-6-pho 90.4 1.2 2.6E-05 36.9 6.9 59 127-187 2-67 (171)
46 TIGR01118 lacA galactose-6-pho 90.1 1.6 3.4E-05 35.1 7.2 59 127-187 2-65 (141)
47 PRK08621 galactose-6-phosphate 89.7 1.8 3.9E-05 34.9 7.2 59 127-187 2-65 (142)
48 PRK05571 ribose-5-phosphate is 89.6 2 4.4E-05 34.7 7.5 59 127-187 2-68 (148)
49 TIGR01120 rpiB ribose 5-phosph 89.5 1.5 3.2E-05 35.3 6.6 59 127-187 1-66 (143)
50 PRK12613 galactose-6-phosphate 89.4 2 4.2E-05 34.6 7.2 59 127-187 2-64 (141)
51 PRK08622 galactose-6-phosphate 87.1 2.6 5.6E-05 35.0 6.7 59 127-187 2-67 (171)
52 TIGR02133 RPI_actino ribose 5- 86.7 3.5 7.6E-05 33.3 7.2 59 127-187 2-68 (148)
53 PRK12615 galactose-6-phosphate 86.5 3 6.4E-05 34.6 6.8 59 127-187 2-67 (171)
54 TIGR00689 rpiB_lacA_lacB sugar 85.4 2.8 6E-05 33.8 6.0 58 128-187 1-65 (144)
55 COG0698 RpiB Ribose 5-phosphat 83.3 4.8 0.0001 32.8 6.5 57 127-187 2-68 (151)
56 TIGR01501 MthylAspMutase methy 82.7 6.2 0.00013 31.3 6.8 51 130-185 9-59 (134)
57 cd02072 Glm_B12_BD B12 binding 80.0 7.7 0.00017 30.6 6.5 51 130-185 7-57 (128)
58 TIGR00640 acid_CoA_mut_C methy 71.9 22 0.00047 27.8 7.1 51 131-186 11-61 (132)
59 COG0426 FpaA Uncharacterized f 70.8 18 0.00038 33.8 7.2 53 99-160 229-282 (388)
60 KOG2537 Phosphoglucomutase/pho 70.8 2.1 4.5E-05 41.1 1.2 14 176-189 57-70 (539)
61 COG2185 Sbm Methylmalonyl-CoA 69.0 16 0.00034 29.6 5.7 43 125-170 12-57 (143)
62 PRK11921 metallo-beta-lactamas 61.0 47 0.001 30.2 8.0 54 99-161 230-286 (394)
63 cd03364 TOPRIM_DnaG_primases T 60.2 24 0.00052 24.5 4.8 34 126-159 44-77 (79)
64 PF00861 Ribosomal_L18p: Ribos 59.0 37 0.00079 26.1 6.0 52 95-156 68-119 (119)
65 PRK02261 methylaspartate mutas 58.6 62 0.0013 25.3 7.4 55 126-186 4-62 (137)
66 PRK05452 anaerobic nitric oxid 57.1 72 0.0016 30.1 8.7 54 100-162 235-291 (479)
67 PRK09271 flavodoxin; Provision 55.9 43 0.00094 26.4 6.1 31 127-157 2-33 (160)
68 PRK06756 flavodoxin; Provision 55.8 57 0.0012 25.0 6.7 33 127-159 3-36 (148)
69 cd02069 methionine_synthase_B1 55.5 77 0.0017 26.6 7.9 59 125-186 88-147 (213)
70 TIGR02370 pyl_corrinoid methyl 55.3 62 0.0014 26.7 7.2 60 125-187 84-144 (197)
71 PRK14719 bifunctional RNAse/5- 55.0 15 0.00032 33.6 3.7 32 126-157 68-99 (360)
72 PRK05569 flavodoxin; Provision 52.9 76 0.0016 23.9 6.9 34 127-160 3-37 (141)
73 PRK13883 conjugal transfer pro 50.1 88 0.0019 25.5 7.0 58 94-160 27-84 (151)
74 PRK05568 flavodoxin; Provision 48.0 1E+02 0.0022 23.1 7.0 35 127-161 3-38 (142)
75 TIGR01753 flav_short flavodoxi 46.8 79 0.0017 23.4 6.0 31 129-159 2-33 (140)
76 COG0256 RplR Ribosomal protein 46.7 85 0.0018 24.8 6.3 51 96-156 75-125 (125)
77 PRK13835 conjugal transfer pro 44.5 1.2E+02 0.0026 24.6 7.0 56 93-158 32-87 (145)
78 cd02070 corrinoid_protein_B12- 44.0 1.2E+02 0.0026 24.9 7.2 56 125-186 82-141 (201)
79 PF13662 Toprim_4: Toprim doma 43.4 20 0.00044 25.0 2.2 34 126-159 47-80 (81)
80 COG0683 LivK ABC-type branched 43.1 1.8E+02 0.0038 25.8 8.6 47 103-157 134-180 (366)
81 PRK06703 flavodoxin; Provision 41.5 1.3E+02 0.0029 23.0 6.7 32 127-158 3-35 (151)
82 cd00951 KDGDH 5-dehydro-4-deox 41.0 1.7E+02 0.0037 25.3 8.0 84 62-159 17-100 (289)
83 cd06335 PBP1_ABC_ligand_bindin 40.0 1E+02 0.0022 26.7 6.4 50 103-160 124-173 (347)
84 PF00582 Usp: Universal stress 39.3 32 0.0007 24.2 2.7 42 126-167 3-44 (140)
85 PF13458 Peripla_BP_6: Peripla 39.3 1.1E+02 0.0024 25.8 6.4 55 95-158 114-168 (343)
86 COG5012 Predicted cobalamin bi 38.9 56 0.0012 28.4 4.5 51 126-178 105-156 (227)
87 cd01989 STK_N The N-terminal d 38.7 48 0.001 24.7 3.7 38 127-164 1-38 (146)
88 PTZ00090 40S ribosomal protein 37.7 2E+02 0.0043 25.1 7.6 61 93-166 158-219 (233)
89 cd06342 PBP1_ABC_LIVBP_like Ty 37.1 2E+02 0.0043 24.2 7.7 52 102-161 120-171 (334)
90 PF00701 DHDPS: Dihydrodipicol 36.9 2.5E+02 0.0054 24.1 8.3 87 60-159 16-102 (289)
91 PF04069 OpuAC: Substrate bind 36.8 1.2E+02 0.0026 25.4 6.3 45 127-171 2-46 (257)
92 PRK04017 hypothetical protein; 36.3 72 0.0016 25.4 4.5 32 126-157 66-97 (132)
93 PF06258 Mito_fiss_Elm1: Mitoc 35.2 3.3E+02 0.007 24.3 9.5 82 87-186 154-236 (311)
94 PF00258 Flavodoxin_1: Flavodo 35.1 65 0.0014 24.2 4.0 24 136-159 8-31 (143)
95 PRK03620 5-dehydro-4-deoxygluc 34.1 2.8E+02 0.006 24.3 8.3 85 61-159 23-107 (303)
96 PRK03767 NAD(P)H:quinone oxido 34.0 1.5E+02 0.0033 24.1 6.2 33 127-159 3-37 (200)
97 PF02789 Peptidase_M17_N: Cyto 33.8 1.8E+02 0.004 21.2 6.2 53 93-154 64-117 (126)
98 TIGR03249 KdgD 5-dehydro-4-deo 32.8 3.2E+02 0.0069 23.7 8.4 85 61-159 21-105 (296)
99 TIGR00674 dapA dihydrodipicoli 32.7 3.2E+02 0.007 23.5 8.7 85 62-159 15-99 (285)
100 cd06352 PBP1_NPR_GC_like Ligan 31.7 2.3E+02 0.0051 24.6 7.5 50 101-159 122-172 (389)
101 PF13362 Toprim_3: Toprim doma 31.4 1.7E+02 0.0037 20.7 5.5 36 126-161 42-79 (96)
102 PRK08105 flavodoxin; Provision 31.2 1.7E+02 0.0037 22.9 5.9 56 127-188 3-59 (149)
103 PF07283 TrbH: Conjugal transf 31.2 1.8E+02 0.004 22.7 5.9 53 99-160 4-56 (121)
104 PF06414 Zeta_toxin: Zeta toxi 31.1 1.3E+02 0.0029 24.2 5.4 64 95-170 73-136 (199)
105 PLN02739 serine acetyltransfer 31.0 38 0.00082 31.3 2.4 32 93-135 322-353 (355)
106 PF00975 Thioesterase: Thioest 30.7 1.7E+02 0.0036 23.3 5.9 53 98-160 46-98 (229)
107 PRK04147 N-acetylneuraminate l 30.6 3.4E+02 0.0075 23.4 8.3 86 61-159 19-105 (293)
108 cd06339 PBP1_YraM_LppC_lipopro 30.4 1.4E+02 0.0031 25.9 5.8 49 103-160 111-159 (336)
109 cd02067 B12-binding B12 bindin 30.3 2.2E+02 0.0048 20.8 6.6 29 131-162 8-36 (119)
110 cd00408 DHDPS-like Dihydrodipi 30.0 3.4E+02 0.0075 23.0 8.7 84 63-159 15-98 (281)
111 COG1004 Ugd Predicted UDP-gluc 29.8 61 0.0013 30.5 3.5 65 93-171 145-209 (414)
112 TIGR01114 mtrH N5-methyltetrah 29.7 98 0.0021 28.2 4.7 56 125-181 148-224 (314)
113 cd06346 PBP1_ABC_ligand_bindin 29.7 2.4E+02 0.0051 23.9 7.0 48 103-159 124-171 (312)
114 PRK15404 leucine ABC transport 29.5 2.2E+02 0.0048 25.1 7.0 49 104-160 148-196 (369)
115 PRK07308 flavodoxin; Validated 29.5 2.6E+02 0.0055 21.3 7.0 30 128-157 4-34 (146)
116 PF03602 Cons_hypoth95: Conser 29.4 46 0.00099 27.3 2.4 51 131-184 18-71 (183)
117 PF05762 VWA_CoxE: VWA domain 29.1 3.3E+02 0.0071 22.7 7.6 58 101-162 130-188 (222)
118 cd06269 PBP1_glutamate_recepto 29.1 2.7E+02 0.0059 22.3 6.9 53 102-163 126-178 (298)
119 cd02071 MM_CoA_mut_B12_BD meth 28.5 2.5E+02 0.0055 21.0 6.6 49 132-186 9-58 (122)
120 PF03808 Glyco_tran_WecB: Glyc 27.7 3.2E+02 0.0069 21.8 8.3 57 127-185 75-132 (172)
121 PF08659 KR: KR domain; Inter 27.2 1.6E+02 0.0034 23.4 5.2 57 102-168 11-69 (181)
122 TIGR03863 PQQ_ABC_bind ABC tra 27.1 2.2E+02 0.0047 25.4 6.5 49 101-158 113-161 (347)
123 cd06356 PBP1_Amide_Urea_BP_lik 26.2 2.6E+02 0.0056 24.0 6.7 49 103-160 119-167 (334)
124 cd06327 PBP1_SBP_like_1 Peripl 26.1 2.2E+02 0.0048 24.2 6.2 50 101-159 120-169 (334)
125 cd00954 NAL N-Acetylneuraminic 26.0 4.3E+02 0.0093 22.8 8.3 84 63-159 18-102 (288)
126 PRK09004 FMN-binding protein M 25.9 3.2E+02 0.0069 21.3 7.1 53 128-188 4-57 (146)
127 TIGR01755 flav_wrbA NAD(P)H:qu 25.8 1.4E+02 0.0031 24.4 4.8 33 127-159 2-36 (197)
128 PRK09607 rps11p 30S ribosomal 25.6 3.4E+02 0.0075 21.5 7.3 66 93-165 48-117 (132)
129 PRK10646 ADP-binding protein; 25.5 1.5E+02 0.0032 24.0 4.7 44 95-149 9-52 (153)
130 cd06334 PBP1_ABC_ligand_bindin 25.4 3.3E+02 0.0072 23.8 7.4 57 101-161 120-176 (351)
131 TIGR01754 flav_RNR ribonucleot 25.4 1.2E+02 0.0027 23.0 4.1 31 127-157 2-33 (140)
132 cd00950 DHDPS Dihydrodipicolin 25.2 4.3E+02 0.0093 22.5 8.3 86 61-159 16-101 (284)
133 cd06350 PBP1_GPCR_family_C_lik 24.9 2.7E+02 0.0059 23.6 6.5 50 101-159 145-194 (348)
134 TIGR03632 bact_S11 30S ribosom 24.8 3.1E+02 0.0067 20.7 8.2 61 93-165 38-99 (108)
135 COG0196 RibF FAD synthase [Coe 24.5 1.3E+02 0.0028 27.1 4.6 68 73-159 79-151 (304)
136 CHL00041 rps11 ribosomal prote 24.0 3.3E+02 0.0072 20.8 8.3 61 93-165 51-112 (116)
137 cd01473 vWA_CTRP CTRP for CS 23.9 3.9E+02 0.0085 21.6 7.5 39 125-163 109-149 (192)
138 PRK09273 hypothetical protein; 23.9 2.4E+02 0.0053 24.2 5.9 23 139-161 16-38 (211)
139 cd06349 PBP1_ABC_ligand_bindin 23.8 3.8E+02 0.0083 22.8 7.3 49 103-159 121-169 (340)
140 cd06343 PBP1_ABC_ligand_bindin 23.6 2.8E+02 0.006 23.9 6.4 50 102-159 129-178 (362)
141 cd01029 TOPRIM_primases TOPRIM 23.0 2.4E+02 0.0052 18.9 4.8 33 126-158 44-76 (79)
142 smart00493 TOPRIM topoisomeras 22.7 1.3E+02 0.0028 20.0 3.4 28 126-153 48-75 (76)
143 PRK08446 coproporphyrinogen II 22.6 5.5E+02 0.012 22.8 8.4 77 68-161 40-116 (350)
144 COG0836 {ManC} Mannose-1-phosp 22.6 4.4E+02 0.0095 24.3 7.5 132 20-171 15-156 (333)
145 cd02768 MopB_NADH-Q-OR-NuoG2 M 22.3 1.2E+02 0.0027 26.7 4.0 41 126-166 151-191 (386)
146 TIGR02082 metH 5-methyltetrahy 22.3 7.2E+02 0.016 26.7 10.0 56 125-186 732-791 (1178)
147 PRK06696 uridine kinase; Valid 21.9 4.1E+02 0.0088 21.8 6.8 34 126-159 21-56 (223)
148 smart00115 CASc Caspase, inter 21.9 4.9E+02 0.011 22.0 8.0 62 127-188 11-83 (241)
149 PF02007 MtrH: Tetrahydrometha 21.5 1.4E+02 0.003 27.0 4.1 61 125-189 143-224 (296)
150 TIGR00646 MG010 DNA primase-re 21.5 1.7E+02 0.0037 25.2 4.5 34 126-159 155-188 (218)
151 cd06326 PBP1_STKc_like Type I 21.3 4.4E+02 0.0095 22.1 7.1 50 101-159 121-170 (336)
152 cd06345 PBP1_ABC_ligand_bindin 21.2 4.1E+02 0.0089 22.7 6.9 34 126-159 145-178 (344)
153 cd06366 PBP1_GABAb_receptor Li 20.7 4.2E+02 0.0091 22.6 6.9 50 101-159 120-169 (350)
154 PF11774 Lsr2: Lsr2 ; InterPr 20.7 1.5E+02 0.0033 22.6 3.7 71 79-167 25-104 (110)
155 cd06338 PBP1_ABC_ligand_bindin 20.6 4.6E+02 0.01 22.2 7.1 52 101-159 124-175 (345)
156 TIGR02884 spore_pdaA delta-lac 20.6 2.4E+02 0.0052 23.5 5.2 34 126-159 187-220 (224)
157 cd06370 PBP1_Speract_GC_like L 20.6 6.1E+02 0.013 22.5 8.2 49 102-159 122-170 (404)
158 cd04509 PBP1_ABC_transporter_G 20.5 4.4E+02 0.0096 20.9 7.3 50 101-159 121-170 (299)
159 TIGR02313 HpaI-NOT-DapA 2,4-di 20.4 5.8E+02 0.012 22.2 8.5 86 61-159 16-101 (294)
160 PRK14047 putative methyltransf 20.3 1.6E+02 0.0036 26.7 4.3 56 125-181 148-224 (310)
161 cd06358 PBP1_NHase Type I peri 20.3 3.9E+02 0.0084 22.7 6.6 34 126-159 133-166 (333)
162 PRK09249 coproporphyrinogen II 20.3 6.6E+02 0.014 23.2 8.5 86 67-167 89-176 (453)
163 PRK10116 universal stress prot 20.2 2.5E+02 0.0054 20.6 4.8 40 126-165 4-43 (142)
164 cd01987 USP_OKCHK USP domain i 20.1 2.4E+02 0.0051 20.2 4.6 45 140-188 49-94 (124)
165 PTZ00129 40S ribosomal protein 20.1 4E+02 0.0087 21.7 6.1 64 94-165 68-136 (149)
166 PF03446 NAD_binding_2: NAD bi 20.1 1.6E+02 0.0034 23.1 3.8 40 126-167 87-126 (163)
No 1
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.96 E-value=3e-29 Score=237.06 Aligned_cols=134 Identities=53% Similarity=0.802 Sum_probs=109.0
Q ss_pred eecccccccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEE
Q 029738 52 KSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG 131 (189)
Q Consensus 52 ~~~~~~~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVG 131 (189)
.+....+..++...+ .+.++++|+++||||++++|.+|+.++|||+++.++|+|||+|+.++.... + ....+|+||
T Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~-~--~~~~~VvVG 121 (583)
T PLN02371 46 TAAAASSSTESPVVD-KDDIRKLQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKAD-G--SGELRVSVG 121 (583)
T ss_pred eecccCCCCcCcCcc-HHHHHHhhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccc-c--CCCCeEEEE
Confidence 334444455555444 356999999999999999877766679999999999999999997641000 0 012479999
Q ss_pred ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 132 KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 132 rD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
||+|.+|++|++++++||+++|++|+++|++|||+++|++...++++++|||||||||
T Consensus 122 ~D~R~sS~~l~~a~a~gL~s~Gi~V~~~g~~pTP~~~~av~~~~~~~~gGImITASHN 179 (583)
T PLN02371 122 RDPRISGPRLADAVFAGLASAGLDVVDMGLATTPAMFMSTLTEREDYDAPIMITASHL 179 (583)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCEEEEecccCchHHHHHHHhccCCCceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999522347899999999999
No 2
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.96 E-value=1.2e-28 Score=192.88 Aligned_cols=102 Identities=32% Similarity=0.457 Sum_probs=89.5
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+++|+++||||+++. .+|||+++.+++++|++|+.++. ...+|+||||.|.+|++++++++++|.+
T Consensus 1 ~~~F~~~girG~~~~------~~lt~~~~~~~~~a~~~~~~~~~--------~~~~VvVg~D~R~~s~~~~~~~~~~l~~ 66 (137)
T PF02878_consen 1 RVLFGTSGIRGIINV------GELTPEFAARLAQAFASYLKEKG--------NGSRVVVGRDTRPSSPMLAKALAAGLRA 66 (137)
T ss_dssp -CCBBTTSEEEECTH------TTBSHHHHHHHHHHHHHHHHHTT--------TSSEEEEEE-SSTTHHHHHHHHHHHHHH
T ss_pred CCccCCCCeeEEeCC------CCCCHHHHHHHHHHHHHhhcccC--------CCCeEEEEEcccCCHHHHHHHHHHHHhh
Confidence 468999999999984 26999999999999999998752 2478999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 67 ~G~~V~~~g~~~tP~~~~~~~--~~~~~ggi~iTaShn 102 (137)
T PF02878_consen 67 NGVDVIDIGLVPTPALSFAIR--QLNADGGIMITASHN 102 (137)
T ss_dssp TTEEEEEEEEB-HHHHHHHHH--HHTESEEEEE--TTS
T ss_pred cccccccccccCcHHhhhhcc--ccccceeeEEEecCC
Confidence 999999999999999999995 688999999999998
No 3
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.94 E-value=8.6e-27 Score=212.66 Aligned_cols=102 Identities=35% Similarity=0.380 Sum_probs=92.9
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+.+|+++||||++++ .+|||+++.++|+|||+|++... ...+|+||||+|.+|++|++++++||++
T Consensus 3 ~~~Fgt~giRG~~~~------~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s 68 (440)
T PRK14323 3 RRYFGTDGVRGVAGE------PPLTPEFVLKLGQAAGEVFKRHG--------PRPVVLLGKDTRQSGDMLEAALAAGLTS 68 (440)
T ss_pred ccEeCCCCeeeecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCccHHHHHHHHHHHHHH
Confidence 468999999999984 36999999999999999997531 1256999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++. +++++||||||||||
T Consensus 69 ~G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn 104 (440)
T PRK14323 69 RGVRVEHLGVLPTPGVSYLTR--HLGATAGVVISASHN 104 (440)
T ss_pred CCCEEEEecccChHHHHHHHH--HhCCCEEEEEecCCC
Confidence 999999999999999999994 789999999999998
No 4
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.94 E-value=1.7e-26 Score=211.63 Aligned_cols=100 Identities=31% Similarity=0.334 Sum_probs=92.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|||+|+.++. ...+|+||||+|.+|++|+++++++|+++
T Consensus 2 ~~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~g~~l~~~~--------~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 66 (446)
T PRK14324 2 KLFGTDGVRGKAG-------EKLTAFLAMRLAMAAGIYFKKHS--------ITNKILVGKDTRRSGYMIENALVSGLTSV 66 (446)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHHHHHhCC--------CCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 5799999999998 48999999999999999997641 12479999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|.+|||+++|++. +++++||||||||||
T Consensus 67 G~~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHN 101 (446)
T PRK14324 67 GYNVIQIGPMPTPAIAFLTE--DMRCDAGIMISASHN 101 (446)
T ss_pred CCeEEEecCccHHHHHHHHh--hcCCceEEEEEcCCC
Confidence 99999999999999999994 789999999999998
No 5
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.94 E-value=2.7e-26 Score=208.83 Aligned_cols=99 Identities=33% Similarity=0.385 Sum_probs=91.6
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
+|+++||||+++ ++|||+++.++|+|||+++.++. ...+|+||||.|.+|++|++++++||+++|
T Consensus 1 ~Fg~~giRG~~~-------~~lt~e~~~~lg~a~~~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G 65 (434)
T cd05802 1 LFGTDGIRGVAN-------EPLTPELALKLGRAAGKVLGKGG--------GRPKVLIGKDTRISGYMLESALAAGLTSAG 65 (434)
T ss_pred CCCCCccceECC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 699999999998 49999999999999999997531 125799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|++|||+++|++. +++++||||||||||
T Consensus 66 ~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn 99 (434)
T cd05802 66 VDVLLLGVIPTPAVAYLTR--KLRADAGVVISASHN 99 (434)
T ss_pred CcEEEEcccchHHHHHHHH--HhCCCeEEEEEecCC
Confidence 9999999999999999995 789999999999998
No 6
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.94 E-value=3e-26 Score=209.01 Aligned_cols=98 Identities=36% Similarity=0.629 Sum_probs=91.3
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
+|+++||||+++ ++|||+++.++|+|||+|+.+.. ..+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fg~~giRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~~~~a~~~gL~s~G 64 (443)
T cd03089 1 IFRAYDIRGIAG-------EELTEEIAYAIGRAFGSWLLEKG---------AKKVVVGRDGRLSSPELAAALIEGLLAAG 64 (443)
T ss_pred CCcccccceeeC-------CccCHHHHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 699999999998 48999999999999999997531 24799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|++|||+++|++. +++++||||||||||
T Consensus 65 ~~V~~~g~~pTP~~~~~v~--~~~a~gGI~ITASHN 98 (443)
T cd03089 65 CDVIDIGLVPTPVLYFATF--HLDADGGVMITASHN 98 (443)
T ss_pred CcEEEeCCcchHHHHHHHh--ccCCCeEEEEecCCC
Confidence 9999999999999999994 789999999999998
No 7
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=2.9e-26 Score=209.49 Aligned_cols=101 Identities=24% Similarity=0.339 Sum_probs=91.9
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||++++ .+|||+++.++|+|||+++.++ + ....|+||||+|.+|++|++++++||++.
T Consensus 3 ~~Fgt~giRG~~~~------~~ltpe~~~~lg~a~g~~l~~~-----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 68 (443)
T PRK14320 3 KYFGTDGIRGEVAN------STITVEFTQKLGNAVGSLINQK-----N---YPKFVIVGQDTRSSGGFLKFALVSGLNAA 68 (443)
T ss_pred cccCCCCeeeEcCC------CCCCHHHHHHHHHHHHHhHhhC-----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 68999999999963 3799999999999999999643 1 12469999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++++||||||||||
T Consensus 69 G~~V~d~g~~pTP~~~~av~--~~~~~gGI~ITaSHN 103 (443)
T PRK14320 69 GIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHN 103 (443)
T ss_pred CCEEEEecccCchHHHHHHH--HcCCceEEEEEeCCC
Confidence 99999999999999999994 789999999999998
No 8
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=3.4e-26 Score=210.41 Aligned_cols=103 Identities=26% Similarity=0.246 Sum_probs=93.3
Q ss_pred hhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029738 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 71 ~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
.+.+|+++||||+++ ++|||+++.++|+|+|++++++. + .+.+|+||||+|.+|++|++++++||+
T Consensus 15 ~~~~Fgt~GIRG~~~-------~~ltpe~a~~lg~a~g~~l~~~~----~---~~~~VvVG~D~R~ss~~l~~a~~~gL~ 80 (465)
T PRK14317 15 ASPLFGTDGIRGKVG-------ELLTAPLALQVGFWAGQVLRQTA----P---GEGPVLIGQDSRNSSDMLAMALAAGLT 80 (465)
T ss_pred cCCeecCCCeeeEeC-------cccCHHHHHHHHHHHHHHHHhcc----C---CCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 346899999999998 48999999999999999997531 0 125699999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 151 a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|++|+++|++|||+++|++. +++++||||||||||
T Consensus 81 s~Gv~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn 117 (465)
T PRK14317 81 AAGREVWHLGLCPTPAVAYLTR--KSEAIGGLMISASHN 117 (465)
T ss_pred HCCCeEEEecccCcHHHHHHHH--hcCCCEEEEEeCCCC
Confidence 9999999999999999999994 789999999999998
No 9
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=3.2e-26 Score=209.15 Aligned_cols=101 Identities=32% Similarity=0.413 Sum_probs=92.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|+|+++.++. + ...+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fg~~giRG~~~-------~~ltpe~~~~ig~a~~~~l~~~~----~---~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 67 (448)
T PRK14316 2 KYFGTDGVRGVAN-------KELTPELAFKLGRAGGYVLTKHE----T---ERPKVLVGRDTRISGDMLESALIAGLLSV 67 (448)
T ss_pred ceeccCCcceEcC-------CCCCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcCHHHHHHHHHHHHHHC
Confidence 4799999999998 48999999999999999987521 0 12569999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++++||||||||||
T Consensus 68 G~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHn 102 (448)
T PRK14316 68 GAEVMRLGVIPTPGVAYLTR--ALGADAGVMISASHN 102 (448)
T ss_pred CCEEEEecccchHHHHHHHH--HhcCcEEEEEEecCC
Confidence 99999999999999999994 789999999999998
No 10
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=3.3e-26 Score=209.45 Aligned_cols=101 Identities=28% Similarity=0.344 Sum_probs=92.7
Q ss_pred hhhccccceeeeeccCCCCCCCC-CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVD-LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~-LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
+.+|+++||||+++ ++ |||+++.++|+|||+|+.++. ...+|+||||.|.+|++|++++++||+
T Consensus 3 ~~~Fg~~giRG~~~-------~~~lt~e~~~~lg~a~g~~l~~~~--------~~~~VvVg~D~R~ss~~l~~a~~~gL~ 67 (448)
T PRK14315 3 RKYFGTDGIRGRAN-------TFPMTAELALRVGQAAGLYFRRGD--------HRHRVVIGKDTRLSGYMIENALVAGFT 67 (448)
T ss_pred CcEECCCCceecCC-------CCCCCHHHHHHHHHHHHHhHhhcC--------CCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999998 37 999999999999999998541 124799999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 151 a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|++|+++|++|||+++|++. +++++||||||||||
T Consensus 68 s~G~~V~~~g~~pTP~~~~a~~--~~~~~gGi~ITaSHn 104 (448)
T PRK14315 68 SVGMDVLLLGPIPTPAVAMLTR--SMRADLGVMISASHN 104 (448)
T ss_pred HCCCeEEEeCCcccHHHHHHHH--hcCCCEEEEEEcCCC
Confidence 9999999999999999999984 789999999999998
No 11
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.93 E-value=4.4e-26 Score=209.36 Aligned_cols=96 Identities=25% Similarity=0.407 Sum_probs=90.3
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|||+|+.. .+|+||||+|.+|++|+++++++|+++
T Consensus 5 ~~Fg~~GiRG~~~-------~~lt~~~~~~~~~a~a~~l~~------------~~VvVg~D~R~ss~~l~~a~a~gL~s~ 65 (456)
T PRK15414 5 TCFKAYDIRGKLG-------EELNEDIAWRIGRAYGEFLKP------------KTIVLGGDVRLTSETLKLALAKGLQDA 65 (456)
T ss_pred ceecccCcceeeC-------CCcCHHHHHHHHHHHHHHhcC------------CeEEEEECCCCChHHHHHHHHHHHHHC
Confidence 5899999999998 489999999999999999852 269999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++++||||||||||
T Consensus 66 Gi~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHN 100 (456)
T PRK15414 66 GVDVLDIGMSGTEEIYFATF--HLGVDGGIEVTASHN 100 (456)
T ss_pred CCeEEEeCCcChHHHHHhhh--ccCCCeEEEEecCCC
Confidence 99999999999999999994 789999999999998
No 12
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=5.7e-26 Score=207.96 Aligned_cols=103 Identities=25% Similarity=0.287 Sum_probs=93.3
Q ss_pred hhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029738 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 71 ~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
++.+|+++||||+++. .+|||+++.++|+|||+|+..+. ...+|+||||.|.+|++|+++++++|+
T Consensus 2 ~~~~Fgt~GiRG~~~~------~~lt~e~~~~l~~a~~~~l~~~~--------~~~~VvVg~D~R~~s~~l~~a~~~gL~ 67 (450)
T PRK14314 2 MKKLFGTDGVRGRANV------YPMTAEMALQLGRAAAYVFRNGS--------GRHRVVIGKDTRLSGYMFENALIAGLC 67 (450)
T ss_pred CCceeCCCCcceecCC------CCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEeCCCcChHHHHHHHHHHHH
Confidence 3578999999999983 24999999999999999997542 124799999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 151 a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|++|+++|.+|||+++|++. +++++||||||||||
T Consensus 68 s~Gv~V~~~g~~ptP~~~~a~~--~~~~~gGI~iTaShn 104 (450)
T PRK14314 68 SMGVDVLLVGPLPTPGIAFITR--SMRADAGVVISASHN 104 (450)
T ss_pred HCCCeEEEecccCCHHHHHHHH--hcCCCEEEEEEeCCC
Confidence 9999999999999999999994 789999999999998
No 13
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=5.6e-26 Score=207.91 Aligned_cols=104 Identities=33% Similarity=0.350 Sum_probs=92.5
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|||+++..+... .....+|+||||+|.+|++|++++++||+++
T Consensus 3 ~~Fg~~giRG~~~-------~~ltpe~~~~lg~a~~~~l~~~~~~----~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~ 71 (448)
T PRK14318 3 RLFGTDGVRGLAN-------RDLTAELALALGAAAARVLGHAGRP----GGRRPVAVVGRDPRASGEFLEAAVSAGLASA 71 (448)
T ss_pred cccCCCCcceecC-------CccCHHHHHHHHHHHHHHHHhcccc----cCCCCeEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 6899999999998 4899999999999999999753100 0013569999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++++||||||||||
T Consensus 72 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn 106 (448)
T PRK14318 72 GVDVLRVGVLPTPAVAYLTA--ALDADFGVMISASHN 106 (448)
T ss_pred CCEEEEecccCchHHHHHHH--hcCCCEEEEEEcCCC
Confidence 99999999999999999994 789999999999998
No 14
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.93 E-value=3e-26 Score=208.95 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=89.9
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
+|+++||||++++ +|||++|.++|+|||+++.++ .+|+||||+|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~giRG~~~~-------~lt~~~~~~lg~a~~~~l~~~-----------~~VvVG~D~R~ss~~~~~a~~~gL~s~G 62 (441)
T cd05805 1 LFGGRGVSGLINV-------DITPEFATRLGAAYGSTLPPG-----------STVTVSRDASRASRMLKRALISGLLSTG 62 (441)
T ss_pred CCCCCCceEEeCC-------CCCHHHHHHHHHHHhhcCCCC-----------CEEEEEcCCChhHHHHHHHHHHHHHhCC
Confidence 5999999999984 899999999999999998531 4699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|.+|||+++|++. ++++++|||||||||
T Consensus 63 ~~V~~~g~~pTP~~~~av~--~~~~~gGi~ITaSHn 96 (441)
T cd05805 63 VNVRDLGALPLPVARYAIR--FLGASGGIHVRTSPD 96 (441)
T ss_pred CeEEecCCcCchHHHHHHH--hcCCCeeEEEEeCCC
Confidence 9999999999999999994 789999999999998
No 15
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.7e-26 Score=208.30 Aligned_cols=100 Identities=35% Similarity=0.513 Sum_probs=93.0
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+.+||++||||+++ .+||++++.++|+|+|+|++.. + ..+|+||||+|.+|++|+.++++||++
T Consensus 7 ~~~FGT~GiRG~~~-------~~lt~~~~~~~g~a~~~~l~~~-----~----~~~VvVG~D~R~ss~~~~~a~~~gl~~ 70 (464)
T COG1109 7 KLLFGTDGIRGVAG-------EELTPEFALKLGRALGSVLRKK-----G----APKVVVGRDTRLSSEMLAAALAAGLTS 70 (464)
T ss_pred cceECCCccccccC-------CCcCHHHHHHHHHHHHHHHhhc-----C----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 36799999999998 3899999999999999999862 2 268999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++ +++++++|||||||||
T Consensus 71 ~G~~v~~~g~~pTP~~~f~~--~~~~~~~gvmITASHN 106 (464)
T COG1109 71 AGIDVYDLGLVPTPAVAFAT--RKLGADAGVMITASHN 106 (464)
T ss_pred CCCeEEEeCCCCCHHHHHHH--HhcCCCeEEEEecCCC
Confidence 99999999999999999999 4789999999999999
No 16
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.93 E-value=1.2e-25 Score=205.54 Aligned_cols=101 Identities=34% Similarity=0.391 Sum_probs=92.3
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+.+|+++||||++++ .+|||+++.++|+|||+++.++ + ..+|+||||.|.+|++|++++++||++
T Consensus 1 ~~~Fgt~GiRG~~~~------~~ltpe~~~~lg~a~a~~l~~~-----~----~~~VvVg~D~R~ss~~l~~a~~~gL~s 65 (443)
T PRK10887 1 RKYFGTDGIRGKVGQ------APITPDFVLKLGWAAGKVLARQ-----G----RPKVLIGKDTRISGYMLESALEAGLAA 65 (443)
T ss_pred CCccCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhC-----C----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368999999999983 2599999999999999999753 1 247999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|.+|||+++|++. .++++||||||||||
T Consensus 66 ~Gv~V~~~g~~pTP~~~~a~~--~~~~~gGI~ITaShn 101 (443)
T PRK10887 66 AGVDVLLTGPMPTPAVAYLTR--TLRAEAGIVISASHN 101 (443)
T ss_pred CCCeEEEECCcChHHHHHHHH--HcCCCEEEEEecCCC
Confidence 999999999999999999995 789999999999998
No 17
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.93 E-value=1.3e-25 Score=205.17 Aligned_cols=99 Identities=28% Similarity=0.457 Sum_probs=91.5
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
+|+++||||+++ ++|||+++.++|+|||+|+.++. ...+|+||||.|.+|++|+++++++|+++|
T Consensus 1 ~f~~~GiRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~--------~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G 65 (445)
T cd05803 1 IISISGIRGIVG-------EGLTPEVITRYVAAFATWQPERT--------KGGKIVVGRDGRPSGPMLEKIVIGALLACG 65 (445)
T ss_pred CCCcCceeeecC-------CCCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 599999999998 48999999999999999997542 125799999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|.+|||+++|++. ++++++|||||||||
T Consensus 66 ~~V~~~g~~pTP~~~~a~~--~~~~~~GI~ITaShn 99 (445)
T cd05803 66 CDVIDLGIAPTPTVQVLVR--QSQASGGIIITASHN 99 (445)
T ss_pred CeEEEeCCCCchHHHHHHH--HhCCCeeEEEEecCC
Confidence 9999999999999999995 789999999999998
No 18
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.93 E-value=2e-25 Score=203.88 Aligned_cols=100 Identities=31% Similarity=0.321 Sum_probs=90.8
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCC
Q 029738 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (189)
Q Consensus 75 FggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi 154 (189)
|+++||||++++ .+|||+++.++|+|||+++.++. . ...+|+||||.|.+|++|++++++||+++|+
T Consensus 1 Fgt~giRG~~~~------~~ltp~~~~~l~~a~~~~l~~~~----~---~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~ 67 (443)
T TIGR01455 1 FGTDGVRGRAGQ------EPLTAELALLLGAAAGRVLRQGR----D---TAPRVVIGKDTRLSGYMLENALAAGLNSAGV 67 (443)
T ss_pred CCCCccceecCC------CCCCHHHHHHHHHHHHHHHHhcC----C---CCCeEEEEeCCCcChHHHHHHHHHHHHHCCC
Confidence 899999999983 37999999999999999997642 0 1236999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 155 LVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 155 ~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|+++|.+|||+++|++. +++++||||||||||
T Consensus 68 ~V~~~g~~pTP~~~~av~--~~~~~gGI~iTaSHn 100 (443)
T TIGR01455 68 DVLLLGPLPTPAVAYLTR--TLRADAGVMISASHN 100 (443)
T ss_pred eEEEeCCcCcHHHHHHHH--hcCCCeEEEEecCCC
Confidence 999999999999999994 789999999999998
No 19
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.92 E-value=1.6e-25 Score=205.12 Aligned_cols=96 Identities=30% Similarity=0.387 Sum_probs=90.5
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|+|+++.. .+|+||||.|.+|++|++++++||+++
T Consensus 3 ~~Fgt~GiRG~~~-------~~lt~e~~~~lg~a~~~~l~~------------~~VvVg~D~R~~s~~l~~a~~~gL~s~ 63 (449)
T PRK14321 3 KYFGTSGIREVVN-------EKLTPELALKVGLALGTYLGG------------GKVVVGKDTRTSSEMLKNALISGLLST 63 (449)
T ss_pred cccccCCeeEEcC-------CCCCHHHHHHHHHHHHhhccC------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 6899999999998 489999999999999999852 269999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++++||||||||||
T Consensus 64 G~~V~~~g~~pTP~~~~av~--~~~~~gGI~ITaSHn 98 (449)
T PRK14321 64 GVDVIDIGLAPTPLTGFAIK--LYNADAGVTITASHN 98 (449)
T ss_pred CCeEEEeCCcCCcHHHHHHH--hcCCCeEEEEEeCCC
Confidence 99999999999999999995 789999999999998
No 20
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.92 E-value=1.4e-25 Score=204.25 Aligned_cols=95 Identities=33% Similarity=0.355 Sum_probs=87.6
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.++|+|||+++.. ..|+||||+|.+|++|++++++||++.
T Consensus 4 ~~Fg~~gIRG~~~-------~~ltpe~~~~lg~a~~~~l~~------------~~VvVg~D~R~ss~~l~~a~~~gL~s~ 64 (429)
T PRK14322 4 KYFGTDGIRGVFG-------ETLTDELAFKVGKALGEIVGE------------GKVIVGKDTRVSGDSLEAAISAGLTSM 64 (429)
T ss_pred ceecCCCcceecC-------CCcCHHHHHHHHHHHhEEecC------------CcEEEEeCCCcCHHHHHHHHHHHHHHC
Confidence 5799999999998 489999999999999998742 149999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. +++ +||||||||||
T Consensus 65 G~~V~~~g~~pTP~~~~av~--~~~-~gGI~ITaSHn 98 (429)
T PRK14322 65 GVDVLLCGILPTPAVALLTR--ITR-SFGVVISASHN 98 (429)
T ss_pred CCeEEEecCcCHHHHHHHHh--ccC-CceEEEECCCC
Confidence 99999999999999999984 555 99999999998
No 21
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.92 E-value=3.7e-25 Score=202.58 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=91.2
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
.|+++||||+++ ++|||+++.++|+|||+++.+.. . ...+|+||||.|.+|++|++++++||+++|
T Consensus 2 ~Fgt~GiRG~~~-------~~lt~~~~~~lg~a~~~~l~~~~----~---~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G 67 (461)
T cd05800 2 KFGTDGWRGIIA-------EDFTFENVRRVAQAIADYLKEEG----G---GGRGVVVGYDTRFLSEEFARAVAEVLAANG 67 (461)
T ss_pred CccCcccccccc-------CCccHHHHHHHHHHHHHHHHHhC----C---CCCeEEEEeCCCcCcHHHHHHHHHHHHHCC
Confidence 499999999998 48999999999999999997531 0 125799999999999999999999999999
Q ss_pred CeEEEe-ccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDM-GLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~-G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++ |.+|||+++|++. +++++||||||||||
T Consensus 68 ~~V~~~~g~~pTP~~~~a~~--~~~~~gGI~ITaSHn 102 (461)
T cd05800 68 IDVYLSDRPVPTPAVSWAVK--KLGAAGGVMITASHN 102 (461)
T ss_pred CEEEEcCCCCCchHHHHHHH--HhCCCeeEEEccCCC
Confidence 999999 7999999999995 789999999999998
No 22
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.92 E-value=6.6e-25 Score=200.89 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=88.5
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCC
Q 029738 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (189)
Q Consensus 75 FggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi 154 (189)
|+++||||+++ ++|||+++.++|+|||+|+.+.. ..+|+||||.|.+|++|+++++++|+++|+
T Consensus 1 f~~~giRG~~~-------~~lt~~~v~~l~~a~~~~l~~~~---------~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~ 64 (445)
T PRK09542 1 IKAYDVRGVVG-------EQIDEDLVRDVGAAFARLMRAEG---------ATTVVIGHDMRDSSPELAAAFAEGVTAQGL 64 (445)
T ss_pred CCccccccccC-------CCcCHHHHHHHHHHHHHHHHHcC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHCCC
Confidence 88999999998 48999999999999999997531 257999999999999999999999999999
Q ss_pred eEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 155 LVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 155 ~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|+++|++|||+++|++. ++++ +|||||||||
T Consensus 65 ~V~~lg~~pTP~~~~av~--~~~~-~Gi~iTaSHN 96 (445)
T PRK09542 65 DVVRIGLASTDQLYFASG--LLDC-PGAMFTASHN 96 (445)
T ss_pred EEEEeCCCCCHHHHheec--ccCC-CEEEEcCCCC
Confidence 999999999999999994 7788 6899999998
No 23
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.92 E-value=5.2e-25 Score=200.52 Aligned_cols=94 Identities=37% Similarity=0.568 Sum_probs=88.5
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
+|+++||||+++ ++|||+++.++|+|||++++ + .+|+||||.|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~giRG~~~-------~~lt~~~~~~l~~a~~~~l~-~-----------~~VvVg~D~R~~s~~l~~a~~~gL~~~G 61 (439)
T cd03087 1 LFGTSGIRGVVG-------EELTPELALKVGKALGTYLG-G-----------GTVVVGRDTRTSGPMLKNAVIAGLLSAG 61 (439)
T ss_pred CcCcCceeeECC-------CCcCHHHHHHHHHHHHhhcc-C-----------CeEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 699999999998 48999999999999999986 2 3699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|++|||+++|++. +++ +||||||||||
T Consensus 62 ~~V~~~g~~~tP~~~~~v~--~~~-~gGi~ItaShn 94 (439)
T cd03087 62 CDVIDIGIVPTPALQYAVR--KLG-DAGVMITASHN 94 (439)
T ss_pred CeEEEcCccChHHHHHHHH--hcC-CceEEEEeCCC
Confidence 9999999999999999994 678 99999999998
No 24
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.92 E-value=8e-25 Score=199.38 Aligned_cols=94 Identities=33% Similarity=0.429 Sum_probs=86.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+|+++||||+++ ++|||+++.+||+|||+++. .+|+||||+|.+|++|++++++||+++
T Consensus 2 ~~Fgt~gIRG~~~-------~~ltpe~~~~lg~a~g~~~~-------------~~V~Vg~D~R~ss~~l~~a~~~gL~s~ 61 (430)
T PRK14319 2 RLFGTDGIRGVVN-------EFLTPEIAFRLGNALGNMVD-------------KKIFIAKDTRASGDMLEAALVAGITSA 61 (430)
T ss_pred cccCCCCcceecC-------CCcCHHHHHHHHHHHHhccC-------------CcEEEEeCCCCChHHHHHHHHHHHHHC
Confidence 5899999999998 48999999999999999884 249999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. ..+.||||||||||
T Consensus 62 G~~V~d~g~~pTP~~~~~~~---~~~~gGi~ItaSHn 95 (430)
T PRK14319 62 GADVYRCGVLPTPALALITK---LEDAAGVMISASHN 95 (430)
T ss_pred CCeEEEeCCcCcHHHHHHHh---ccCceEEEEEeCCC
Confidence 99999999999999999663 33459999999998
No 25
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=99.91 E-value=1.6e-24 Score=204.90 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=92.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
-.||++||||++++|+ ..+|+..|.++++|+|+|+.+.+ +......+|+||||+|.+|++|+++++++|+++
T Consensus 45 i~FGT~GiRG~~g~~~----~~~n~~~v~~~~~a~a~~l~~~~----~~~~~~~~VvVg~D~R~~S~~fa~~~a~~L~a~ 116 (584)
T PTZ00150 45 MEFGTAGLRGKMGAGF----NCMNDLTVQQTAQGLCAYVIETF----GQALKSRGVVIGYDGRYHSRRFAEITASVFLSK 116 (584)
T ss_pred CcccCcccccccCCCC----cHHHHHHHHHHHHHHHHHHHHhc----ccccCCCcEEEEeCCCCCcHHHHHHHHHHHHHC
Confidence 4589999999998641 24888889999999999997643 100012469999999999999999999999999
Q ss_pred CCeEEEec-cCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMG-LATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G-~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++| ++|||+++|++. +++++||||||||||
T Consensus 117 Gi~V~~~g~~~pTP~lsfav~--~~~a~gGImITASHN 152 (584)
T PTZ00150 117 GFKVYLFGQTVPTPFVPYAVR--KLKCLAGVMVTASHN 152 (584)
T ss_pred CCEEEEeCCCCCcHHHHHHHH--HhCCCeEEEEeccCC
Confidence 99999997 999999999994 789999999999998
No 26
>PLN02307 phosphoglucomutase
Probab=99.91 E-value=1.9e-24 Score=204.62 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=89.0
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+.+||++||||+++ ..+|++.+.++++|++.++.... . ....|+||||+|.+|++|+++++++|++
T Consensus 22 ~~~FGT~GiRG~~~-------~~l~~~~~~~ig~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~fa~~~a~~L~a 87 (579)
T PLN02307 22 GQKPGTSGLRKKVK-------VFMQENYLANFVQALFNALPAEK----V---KGATLVLGGDGRYFNKEAIQIIIKIAAA 87 (579)
T ss_pred CCCCcCcccccccc-------ccCCHHHHHHHHHHHHHHHHhcC----C---CCCeEEEEeCCCcchHHHHHHHHHHHHH
Confidence 35799999999986 37999999999998866665321 0 1235999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhcCCC---CCCceEEEeCCCC
Q 029738 152 AGCLVFDM---GLATTPACFMSTLLPPF---AYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~---G~~pTP~l~fav~~~~~---~a~gGImITASHN 189 (189)
+|++|+++ |++|||+++|++. ++ ++++|||||||||
T Consensus 88 ~Gi~V~~~~~~G~~PTP~vsfav~--~~~~~~a~gGImITASHN 129 (579)
T PLN02307 88 NGVRRVWVGQNGLLSTPAVSAVIR--ERDGSKANGGFILTASHN 129 (579)
T ss_pred CCCEEEEeCCCCccCchHHHHHHH--HhcccCCCeEEEEecCCC
Confidence 99999999 7999999999994 78 8999999999999
No 27
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=99.91 E-value=2.2e-24 Score=202.86 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=89.0
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
+.|+++||||++++ +||++++.++|+|++.++.... . ...+|+||||+|.+|++|+++++++|+++
T Consensus 11 ~~Fgt~giRG~~~~-------~l~~~~~~~~~~a~~~~~~~~~----~---~~~~VvVG~D~R~~S~~~a~~~a~~L~~~ 76 (548)
T cd03085 11 QKPGTSGLRKKVKV-------FQQPNYLENFVQSIFNALPPEK----L---KGATLVVGGDGRYYNKEAIQIIIKIAAAN 76 (548)
T ss_pred CCCCcccccEeecc-------ccCHHHHHHHHHHHHHHHHhcc----C---CCCeEEEEECCCcChHHHHHHHHHHHHHC
Confidence 46999999999973 8999999999998866664321 0 11369999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDM---GLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~---G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++ |++|||+++|++. +++++||||||||||
T Consensus 77 G~~V~~~~~~G~~pTP~l~fav~--~~~a~gGImITASHN 114 (548)
T cd03085 77 GVGKVVVGQNGLLSTPAVSAVIR--KRKATGGIILTASHN 114 (548)
T ss_pred CCeEEEeCCCCccCchHHHHHHH--hcCCCeEEEEecCCC
Confidence 9999999 8999999999994 789999999999999
No 28
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.91 E-value=4.5e-24 Score=196.04 Aligned_cols=97 Identities=28% Similarity=0.324 Sum_probs=87.5
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
.|+++||||++. +|||+++.++|+|||+++.... ....|+||||.|.+|++|+++++++|+++|
T Consensus 1 ~Fgt~GiRG~~~--------~ltpe~~~~l~~a~~~~l~~~~--------~~~~VvVG~D~R~~s~~l~~a~~~gL~~~G 64 (459)
T cd03088 1 KFGTSGLRGLVT--------DLTDEVCYAYTRAFLQHLESKF--------PGDTVAVGRDLRPSSPRIAAACAAALRDAG 64 (459)
T ss_pred CCCCcccceeec--------cCCHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCCCcchHHHHHHHHHHHHHCC
Confidence 389999999983 7999999999999999997531 124699999999999999999999999999
Q ss_pred CeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++|++|||+++|++. ++++ ||||||||||
T Consensus 65 v~V~~~g~~pTP~~~~a~~--~~~~-ggI~ITaSHn 97 (459)
T cd03088 65 FRVVDCGAVPTPALALYAM--KRGA-PAIMVTGSHI 97 (459)
T ss_pred CEEEEeCCCCCHHHHHHHH--HcCC-cEEEEeCCCC
Confidence 9999999999999999995 5655 8999999998
No 29
>PRK07564 phosphoglucomutase; Validated
Probab=99.90 E-value=5.5e-24 Score=199.60 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=90.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
.+||++||||+++. .+||++++.+++++||+|+.+.. ...+|+||||+|.+|++|+++++++|+++
T Consensus 38 ~~FGT~GiRg~~~~------~~lt~~~v~~i~~a~a~~~~~~~--------~~~~VvVG~D~R~~S~~~a~a~a~gL~s~ 103 (543)
T PRK07564 38 VKFGTSGHRGSSLQ------PSFNENHILAIFQAICEYRGKQG--------ITGPLFVGGDTHALSEPAIQSALEVLAAN 103 (543)
T ss_pred CCCcccccccccCC------CCcCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEecCCcCCHHHHHHHHHHHHHC
Confidence 46999999999963 36999999999999999997531 12369999999999999999999999999
Q ss_pred CCeEEEe---ccCChhHHHHhhhcCCCC-----CCceEEEeCCCC
Q 029738 153 GCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~---G~~pTP~l~fav~~~~~~-----a~gGImITASHN 189 (189)
|++|+++ |++|||+++|++. +++ ++||||||||||
T Consensus 104 Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~gGImITASHN 146 (543)
T PRK07564 104 GVGVVIVGRGGYTPTPAVSHAIL--KYNGRGGGLADGIVITPSHN 146 (543)
T ss_pred CCEEEEeCCCCcCCchHHHHHHH--HhCCCccccceeEEEecCCC
Confidence 9999965 8999999999995 677 999999999998
No 30
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.90 E-value=5.5e-24 Score=199.57 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=89.9
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+.+||++||||+++. .+||++++.++|+||++|+.+. + ...+|+||||+|.+|++|+++++++|++
T Consensus 38 ~~~FGT~GiRG~~~~------~~lt~~~~~~i~~a~a~~~~~~-----~---~~~~VvVG~D~R~sS~~~~~a~a~gL~s 103 (543)
T TIGR01132 38 AVKFGTSGHRGSALR------GTFNEPHILAIAQAIAEYRAAQ-----G---ITGPLYIGKDTHALSEPAFISVLEVLAA 103 (543)
T ss_pred ccCCcCccccCCccc------CccCHHHHHHHHHHHHHHHHHh-----C---CCCcEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 357999999999873 3699999999999999999754 2 1135999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhcCCCC-----CCceEEEeCCCC
Q 029738 152 AGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~---G~~pTP~l~fav~~~~~~-----a~gGImITASHN 189 (189)
+|++|+++ |++|||+++|++. +++ +++|||||||||
T Consensus 104 ~Gi~V~~~~~~G~~pTP~~~~av~--~~~~~~~~~~gGI~ITASHN 147 (543)
T TIGR01132 104 NGVEVIVQENNGFTPTPAVSHAIL--THNKKGEPLADGIVITPSHN 147 (543)
T ss_pred CCCEEEEeCCCCcCCchHHHHHHH--HhcccccccceEEEEeCCCC
Confidence 99999984 8999999999995 555 788999999998
No 31
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.90 E-value=6.4e-24 Score=195.83 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=92.2
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
.|+++||||++++++ .+||++.+.++|+|||+++.+.. + .....+|+||||.|.+|++|+++++++|+++|
T Consensus 3 ~Fgt~giRg~~~~~~----~~l~~~~~~~l~~a~~~~l~~~~----~-~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~G 73 (487)
T cd05799 3 EFGTAGLRGKMGAGT----NRMNDYTVRQATQGLANYLKKKG----P-DAKNRGVVIGYDSRHNSREFAELTAAVLAANG 73 (487)
T ss_pred cccCcccccccCCCC----ccccHHHHHHHHHHHHHHHHHhc----c-cccCCeEEEEcCCCCChHHHHHHHHHHHHHCC
Confidence 599999999998532 25999999999999999998542 0 00125799999999999999999999999999
Q ss_pred CeEEEec-cCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDMG-LATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~G-~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++| .+|||+++|++. +++++||||||||||
T Consensus 74 i~V~~~g~~~ptP~~~~~i~--~~~~~gGI~iTaSHn 108 (487)
T cd05799 74 IKVYLFDDLRPTPLLSFAVR--HLGADAGIMITASHN 108 (487)
T ss_pred CEEEEeCCCCCCcHHHHHHH--HhCCCeeEEEEeeCC
Confidence 9999999 999999999994 789999999999998
No 32
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.89 E-value=4.2e-23 Score=192.74 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=87.9
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+..||++||||+++. .+||++++.++++|+|+|+.+.. ....|+||||+|..|.+++++++++|++
T Consensus 20 ~~~FGT~GiRG~~g~------~~lt~~~v~~i~~a~~~~l~~~~--------~~~~VvVg~D~R~~S~~~~~~~~~gL~s 85 (522)
T cd05801 20 RVAFGTSGHRGSSLK------GSFNEAHILAISQAICDYRKSQG--------ITGPLFLGKDTHALSEPAFISALEVLAA 85 (522)
T ss_pred eeeEEcccccCccCC------CchhHHHHHHHHHHHHHHHHhhC--------CCCeEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 357999999999874 36999999999999999997542 1135999999999888888888899999
Q ss_pred CCCeEEE---eccCChhHHHHhhhcCCCCCC------ceEEEeCCCC
Q 029738 152 AGCLVFD---MGLATTPACFMSTLLPPFAYD------ASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d---~G~~pTP~l~fav~~~~~~a~------gGImITASHN 189 (189)
+|++|++ +|++|||+++|++. +++++ ||||||||||
T Consensus 86 ~Gi~V~~~~~~g~~pTP~~~~av~--~~~~~~~~~~~gGI~ITASHN 130 (522)
T cd05801 86 NGVEVIIQQNDGYTPTPVISHAIL--TYNRGRTEGLADGIVITPSHN 130 (522)
T ss_pred CCCEEEEeCCCCCCCchHHHHHHH--HhccccccCCCcEEEEECCCC
Confidence 9999995 79999999999995 67765 5999999998
No 33
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=181.13 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=94.2
Q ss_pred ccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCC
Q 029738 75 QNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGC 154 (189)
Q Consensus 75 FggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi 154 (189)
|++.|+||.+..|+ ..+|+..+.+++++++.|+.+.. + ..+..|+||||+|.+|..|+++++.+|..+|+
T Consensus 62 fgt~GlRg~m~agf----~~mnel~~iq~~qg~a~yl~~~~----~--~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~ 131 (607)
T KOG1220|consen 62 FGTAGLRGEMRAGF----SRMNELTAIQFGQGLAAYLKNQF----P--SKNLGIVIGHDGRYNSKRFAELVAAVFLLNGF 131 (607)
T ss_pred eeccccccccccCc----hhhhHHHHHHHHHHHHHHHHHhC----C--cccceEEEecCCccchHHHHHHHHHHHHhCCc
Confidence 88999999998774 47999999999999999999875 2 12358999999999999999999999999999
Q ss_pred eEEEec-cCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 155 LVFDMG-LATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 155 ~V~d~G-~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++++ ++|||.+.|++. +++|++|||||||||
T Consensus 132 ~v~lf~~~v~TP~vpfav~--~l~~dAgIMiTASHn 165 (607)
T KOG1220|consen 132 KVYLFSELVPTPFVPFAVL--TLGADAGIMITASHN 165 (607)
T ss_pred eEEEeccccCCCcchhHHH--HhccCceEEEeccCC
Confidence 999998 999999999996 699999999999998
No 34
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.8e-14 Score=129.67 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=88.6
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
..-||+||.||.+..+ .+++..+..+.+|+.+++.+.. ...+++||+|+|..++..-+.++++|++
T Consensus 15 ~~k~GTSG~R~~~~~~------~fne~~i~a~~Qai~d~~~~~~--------~~~~L~vG~D~~~~se~a~~~~lev~aA 80 (524)
T COG0033 15 DVKFGTSGHRGSALVF------TFNENHILAFIQAIADYRAEGG--------IGGPLVVGGDTHALSEPAIQSALEVLAA 80 (524)
T ss_pred hcCCCCccccCccccC------ccCHHHHHHHHHHHHHHHhccC--------CCCceEECCCcccccHHHHHHHHHHHHh
Confidence 3459999999998753 7899999999999999997652 3478999999999999999999999999
Q ss_pred CCCeEEEe---ccCChhHHHHhhhcC--CCC-CCceEEEeCCCC
Q 029738 152 AGCLVFDM---GLATTPACFMSTLLP--PFA-YDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~---G~~pTP~l~fav~~~--~~~-a~gGImITASHN 189 (189)
+|++++.. |++|||+++++++.. +.+ ..+||+||+|||
T Consensus 81 Ngv~~iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHN 124 (524)
T COG0033 81 NGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHN 124 (524)
T ss_pred cCceEEEecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCC
Confidence 99999875 699999999998621 234 456699999999
No 35
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3.8e-09 Score=97.27 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=75.5
Q ss_pred cccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCe
Q 029738 76 NGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCL 155 (189)
Q Consensus 76 ggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~ 155 (189)
|++|+|.++-.- ++.+.++.+++.+-.++ ... ...+.++|||-|.|+.+....+.+++..+++|+.
T Consensus 19 GTSGLRKkvkvF---~qpnY~eNfvQa~~~a~----~~~-------~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~ 84 (558)
T KOG0625|consen 19 GTSGLRKKVKVF---KQPNYTENFVQAIMNAL----PGE-------KSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVG 84 (558)
T ss_pred Cccchhhcceee---cCCchHHHHHHHHHhcc----ccc-------cccCceEEEcCCCcchhHHHHHHHHHHHhhcCcc
Confidence 789999987531 12356666666544433 211 1234789999999999999999999999999999
Q ss_pred EEEe---ccCChhHHHHhhhcCCC-CCCceEEEeCCCC
Q 029738 156 VFDM---GLATTPACFMSTLLPPF-AYDASIMILLCYR 189 (189)
Q Consensus 156 V~d~---G~~pTP~l~fav~~~~~-~a~gGImITASHN 189 (189)
-+.+ |+++||+++.-+. +. .+.|||++|||||
T Consensus 85 rlivGqnGiLSTPAvS~iIR--k~~ka~GGiILTASHn 120 (558)
T KOG0625|consen 85 RLIVGQNGILSTPAVSCIIR--KYIKAGGGIILTASHN 120 (558)
T ss_pred eEEeccCCcccchHHHHHHH--hhcccCceEEEEeccC
Confidence 8876 6999999987664 43 7889999999998
No 36
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.84 E-value=5.6e-09 Score=98.34 Aligned_cols=55 Identities=35% Similarity=0.464 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCc
Q 029738 124 EDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDA 180 (189)
Q Consensus 124 ~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~g 180 (189)
...+|+||||+|.+|++|+++++++|.+.|++|+|+|.+|||+++|++. .+++.|
T Consensus 101 ~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~g~~~TP~~~~~v~--~~~~~g 155 (513)
T cd03086 101 VPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVR--AANTEG 155 (513)
T ss_pred CCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEccCcCcHHHHHHHH--hcCCCC
Confidence 3478999999999999999999999999999999999999999999995 566553
No 37
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.84 E-value=5.2e-09 Score=99.62 Aligned_cols=48 Identities=38% Similarity=0.566 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhh
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTL 172 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~ 172 (189)
..+|+||||+|.||+.|++++++||.+.|++|+|+|++|||+++|++.
T Consensus 127 ~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~G~~tTP~l~~~v~ 174 (562)
T PLN02895 127 PAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDMGILTTPQLHWMVR 174 (562)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEeCcCCcHHHHHHHH
Confidence 468999999999999999999999999999999999999999999995
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.78 E-value=1e-08 Score=98.06 Aligned_cols=48 Identities=35% Similarity=0.537 Sum_probs=46.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHH-hCCCeEEEeccCChhHHHHhhh
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLA-RAGCLVFDMGLATTPACFMSTL 172 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~-a~Gi~V~d~G~~pTP~l~fav~ 172 (189)
...|+||||+|.||++|++++.+||. +.|++|+|+|++|||+++|++.
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~G~~tTP~l~y~v~ 200 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNFGIVTTPQLHFLVA 200 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEeCCCCcHHHHHHHH
Confidence 46799999999999999999999999 9999999999999999999985
No 39
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00012 Score=69.04 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhc
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL 173 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~ 173 (189)
+...+.+.++.. .. + .....+|++|||+|.+|+.|.+++..++....+.+.|+|+++||.+.|.+..
T Consensus 106 l~~~l~kil~~~-~~--~-~t~~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~GvvtTPqLHy~v~~ 172 (539)
T KOG2537|consen 106 LERELAKILEKE-AL--G-TTVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRA 172 (539)
T ss_pred HHHHHHHHHhHh-hc--c-CcccceEEEecCCCCccHHHHHHHHHHHHhhheEecceEEEcchhhhhhhhh
Confidence 445555555542 11 1 1134689999999999999999999999998899999999999999999853
No 40
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=96.31 E-value=0.0024 Score=56.97 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=28.2
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHH
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEW 110 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~ 110 (189)
+|+++||||+++ ++|||+++.++|.|||++
T Consensus 1 ~fg~~gi~G~~n-------~~itpe~~~~lg~a~g~~ 30 (355)
T cd03084 1 IFGTSGVRGVVG-------DDITPETAVALGQAIGST 30 (355)
T ss_pred CCcccCcccccC-------CcCCHHHHHHHHHHHhcc
Confidence 699999999998 599999999999999996
No 41
>PLN02895 phosphoacetylglucosamine mutase
Probab=95.93 E-value=0.01 Score=57.16 Aligned_cols=38 Identities=13% Similarity=-0.088 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCeEEEe-ccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 142 SVAVFAGLARAGCLVFDM-GLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~-G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
-+..++.|.+.|+.|..+ .+.|| ++++++|||||||||
T Consensus 31 FR~~a~~l~~~~~r~~~~~~~r~~----------~~~~~~gVmITaSHn 69 (562)
T PLN02895 31 FRTDASLLESTVFRVGILAALRSL----------KTGAATGLMITASHN 69 (562)
T ss_pred hHHHHHHHHhcCeEEEEeCCCCcc----------ccCCCcEEEEeCCCC
Confidence 455688999999999887 56666 136789999999998
No 42
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=91.04 E-value=0.13 Score=49.96 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=11.3
Q ss_pred CCceEEEeCCCC
Q 029738 178 YDASIMILLCYR 189 (189)
Q Consensus 178 a~gGImITASHN 189 (189)
+.+|||||||||
T Consensus 75 ~~~GImiTASHN 86 (585)
T PTZ00302 75 KSVGVMITASHN 86 (585)
T ss_pred cceeEEEeCCCC
Confidence 689999999998
No 43
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=90.61 E-value=1 Score=35.93 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=43.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC-----hhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .+..+++.+.+-|.+.|++|.|+|.-. -|.+.+.+. ..+-.++-||+|-+|
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgt 66 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGT 66 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCC
Confidence 48899885 689999999999999999999999666 444444321 113457889998765
No 44
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=90.41 E-value=1.2 Score=36.06 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=43.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHh--CCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a--~Gi~V~d~G~-----~pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.|. .|..|++.+.+-|.. .|++|+|+|. +.-|.+...+. .....++-||+|-+|
T Consensus 3 mkI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGt 71 (151)
T PTZ00215 3 KKVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGS 71 (151)
T ss_pred cEEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 479999995 689999999999999 9999999985 23344433321 112346779988665
No 45
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=90.39 E-value=1.2 Score=36.94 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=42.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC-----hhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..|++.+.+-|.+.|++|.|+|.-. -|.+...+. .....++-||+|-.|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGT 67 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGT 67 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58999985 689999999999999999999999522 333333221 113457889988654
No 46
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=90.14 E-value=1.6 Score=35.13 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=43.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc---CChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~---~pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..+++.+.+-|.+.|++|+|+|. +--|-+.+.+. ..+..++-||+|-+|
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGt 65 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAY 65 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 58999985 6899999999999999999999996 33354444321 013457889988654
No 47
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=89.71 E-value=1.8 Score=34.87 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=43.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc---CChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL---ATTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~---~pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..+++.+.+-|.+.|++|.|+|. +.-|.+.+.+. .....++-||.|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGT 65 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAY 65 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 58999985 6889999999999999999999996 33455544332 012346788888654
No 48
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=89.55 E-value=2 Score=34.71 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=42.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC------ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA------TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~------pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..|++.+.+-|.+.|++|+|+|.- .-|.+...+. .....++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 68 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGT 68 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58999995 68999999999999999999999852 2233333221 113457889998665
No 49
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=89.45 E-value=1.5 Score=35.27 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=42.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-----CChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-----ATTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-----~pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..|++.+.+-|.+.|++|+|+|. +.-|.+...+. .....++-||+|-+|
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 66 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGT 66 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCC
Confidence 38899885 6899999999999999999999986 23344333221 113457889988654
No 50
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=89.42 E-value=2 Score=34.59 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=43.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh--hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT--PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT--P~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|-.+++.+.+-|.+.|++|.|+|.-++ |-+...+. ..+..++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGt 64 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAY 64 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 58899985 6899999999999999999999996333 44433321 013457789988654
No 51
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=87.10 E-value=2.6 Score=35.00 Aligned_cols=59 Identities=22% Similarity=0.125 Sum_probs=43.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~-----pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|-.|++.+.+-|.+.|++|.|+|.- .-|-+.+.+. ...-.++-||+|-+|
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGT 67 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 58999985 68899999999999999999999953 3444444322 113447889988654
No 52
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=86.72 E-value=3.5 Score=33.27 Aligned_cols=59 Identities=27% Similarity=0.304 Sum_probs=43.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc------CChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL------ATTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~------~pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .+-.+++.+.+-|...|++|.|+|. ..-|-+...+. .....++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGt 68 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGS 68 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCC
Confidence 58899885 6889999999999999999999995 12344443321 013457789988654
No 53
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=86.52 E-value=3 Score=34.63 Aligned_cols=59 Identities=22% Similarity=0.084 Sum_probs=43.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~-----pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..|++.+.+-|.+.|++|.|+|.- --|.+.+.+. .....++-||+|-+|
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGT 67 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58999985 68899999999999999999999852 2344433321 113456788888654
No 54
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=85.42 E-value=2.8 Score=33.77 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=40.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-----ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-----TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 128 VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~-----pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
|+||.|. .|..+++.+.+-|.+.|++|.|+|.- .-|-+.+.+. ...-.++-||+|-+|
T Consensus 1 I~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 65 (144)
T TIGR00689 1 IAIGSDH--AGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGT 65 (144)
T ss_pred CEEeeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 4677774 68899999999999999999999862 2333333221 113457889998655
No 55
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=83.30 E-value=4.8 Score=32.80 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=41.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-Chh-----HHHH----hhhcCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TTP-----ACFM----STLLPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~-pTP-----~l~f----av~~~~~~a~gGImITAS 187 (189)
+|+||.|. .+..+++.+.+-|.+.|++|+|+|.. ++. -... ++. .-.++-||+|-++
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~--~~~~d~GIliCGT 68 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVL--NGEADLGILICGT 68 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHH--cCCCCeeEEEecC
Confidence 58899884 78999999999999999999999744 332 2211 232 2257889988654
No 56
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.67 E-value=6.2 Score=31.29 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred EEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEe
Q 029738 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMIL 185 (189)
Q Consensus 130 VGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImIT 185 (189)
|+-|.+.-|. ..+...|.++|++|+|+|..-+|.-..... ++.+++ -|.++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa-~~~~ad-iVglS 59 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNLGVLSPQEEFIKAA-IETKAD-AILVS 59 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCCC-EEEEe
Confidence 4567776666 456678899999999999877776555443 245554 34443
No 57
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.99 E-value=7.7 Score=30.58 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred EEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEe
Q 029738 130 LGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMIL 185 (189)
Q Consensus 130 VGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImIT 185 (189)
|+-|.+.-|. ..++..|.++|++|+|+|..-+|.-..... .+.+++ -|.++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidLG~~v~~e~~v~aa-~~~~ad-iVglS 57 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNLGVLSPQEEFIDAA-IETDAD-AILVS 57 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HHcCCC-EEEEe
Confidence 4566666665 456668899999999999866666555443 244554 34444
No 58
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=71.94 E-value=22 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=31.1
Q ss_pred EecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeC
Q 029738 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 131 GrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITA 186 (189)
|-|.+.-+. ..++..|+++|++|+++|.--+|.-.-... .+.+++ -|.|++
T Consensus 11 g~D~Hd~g~---~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-~e~~ad-ii~iSs 61 (132)
T TIGR00640 11 GQDGHDRGA---KVIATAYADLGFDVDVGPLFQTPEEIARQA-VEADVH-VVGVSS 61 (132)
T ss_pred CCCccHHHH---HHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcCCC-EEEEcC
Confidence 445555554 445667899999999999766655433332 244554 355544
No 59
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=70.80 E-value=18 Score=33.76 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCC-CChHHHHHHHHHHHHhCCCeEEEec
Q 029738 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 99 ~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
...++..+|-+|..... ..+|+|-||+= -+.+.++++++++|+..|++|..+.
T Consensus 229 ~~~~i~~~Y~~W~~~~~---------~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~ 282 (388)
T COG0426 229 NPKEIVEAYRDWAEGQP---------KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVIN 282 (388)
T ss_pred CHHHHHHHHHHHHccCC---------cceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEE
Confidence 34567788988876431 23799999965 5788999999999999999987553
No 60
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=70.77 E-value=2.1 Score=41.09 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.6
Q ss_pred CCCCceEEEeCCCC
Q 029738 176 FAYDASIMILLCYR 189 (189)
Q Consensus 176 ~~a~gGImITASHN 189 (189)
.+..-|+|||||||
T Consensus 57 ~gs~IGvMiTASHN 70 (539)
T KOG2537|consen 57 GGSTIGVMITASHN 70 (539)
T ss_pred cCCeeEEEEEeccC
Confidence 34567999999998
No 61
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.97 E-value=16 Score=29.58 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCeEEE---EecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHh
Q 029738 125 DVKVSL---GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMS 170 (189)
Q Consensus 125 ~~~VvV---GrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fa 170 (189)
+.+|+| |-|.+.-+. +.++..|++.|++|++.|...||.=...
T Consensus 12 rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g~~~tp~e~v~ 57 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLGLFQTPEEAVR 57 (143)
T ss_pred CceEEEeccCccccccch---HHHHHHHHhCCceEEecCCcCCHHHHHH
Confidence 356766 456555444 4467889999999999999988865443
No 62
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=60.96 E-value=47 Score=30.17 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHH--hCCCeEEEecc
Q 029738 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLA--RAGCLVFDMGL 161 (189)
Q Consensus 99 ~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-sS~~la~ava~gL~--a~Gi~V~d~G~ 161 (189)
.+.++-..|-+|.... ..++|+|-|++.. +.+++++++++++. ..|++|..+.+
T Consensus 230 ~~~~~~~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~ 286 (394)
T PRK11921 230 NPLQIVEKYLEWAANY---------QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNS 286 (394)
T ss_pred CHHHHHHHHHHHhhcC---------CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEEC
Confidence 3455555666766432 2467999999995 68899999999999 78988754443
No 63
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=60.22 E-value=24 Score=24.46 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+|++..|.-..|...++.+.+-|...|++|..+
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4799999999999999999999999999998754
No 64
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=58.95 E-value=37 Score=26.11 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeE
Q 029738 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (189)
Q Consensus 95 LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V 156 (189)
=|-+.++.+|..+|+.+.+. | -..|++++-....... ..++++++.+.|+++
T Consensus 68 ~n~~aa~~vG~lla~ra~~~-----g----i~~v~fdr~~~~y~gr-v~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 68 KNVEAAYLVGELLAKRALEK-----G----IAKVVFDRGGYKYHGR-VKALADGAREGGLEF 119 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHT-----T----SSEEEECTSTSSSSSH-HHHHHHHHHHTTCB-
T ss_pred CCEehHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCcccHH-HHHHHHHHHHcCCCC
Confidence 35688999999999988875 3 2578888876544443 356799999999975
No 65
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.64 E-value=62 Score=25.33 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=34.2
Q ss_pred CeEEEE---ecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 126 VKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 126 ~~VvVG---rD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
.+|++| -|.+.-|.. .++..|.+.|++|+++|. +|...+.-++. +.+++ .|.|++
T Consensus 4 ~~vl~~~~~gD~H~lG~~---iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~d-~V~lS~ 62 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNK---ILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDAD-AILVSS 62 (137)
T ss_pred CEEEEEeCCCChhHHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcC
Confidence 456665 455555544 456678899999999996 55555554543 44443 344443
No 66
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=57.12 E-value=72 Score=30.12 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCC-hHHHHHHHHHHHHhC--CCeEEEeccC
Q 029738 100 VEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-GPSLSVAVFAGLARA--GCLVFDMGLA 162 (189)
Q Consensus 100 v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~s-S~~la~ava~gL~a~--Gi~V~d~G~~ 162 (189)
+.++-..+-+|.... ...+|+|-|++... .++++++++++|.+. |++|....+.
T Consensus 235 ~~~~l~~Y~~~~~~~---------~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~ 291 (479)
T PRK05452 235 PTQIVELYLKWAADY---------QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVA 291 (479)
T ss_pred HHHHHHHHHHHhhcc---------CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECC
Confidence 344444555555432 23679999999965 899999999999976 6766544443
No 67
>PRK09271 flavodoxin; Provisional
Probab=55.86 E-value=43 Score=26.38 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=25.2
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEE
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~ 157 (189)
+|+|-|++.. +.+.+++.++++|.+.|++|.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~ 33 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVD 33 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeE
Confidence 4778888875 678899999999999998763
No 68
>PRK06756 flavodoxin; Provisional
Probab=55.79 E-value=57 Score=25.01 Aligned_cols=33 Identities=3% Similarity=-0.091 Sum_probs=24.7
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEe
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
+|+|-|+++. +.+.++++++++|...|++|..+
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~ 36 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVI 36 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEe
Confidence 5777777774 57778888888888888776543
No 69
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.45 E-value=77 Score=26.64 Aligned_cols=59 Identities=17% Similarity=0.021 Sum_probs=38.4
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
..+|++|.=.-..-..=+..++..|.+.|++|+++|. +|...+--++. +.+.+ -|.+++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~--~~~~~-~V~lS~ 147 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAK--EHKAD-IIGLSG 147 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcc
Confidence 4688888644444444445567788999999999995 77777655553 45543 344443
No 70
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.32 E-value=62 Score=26.66 Aligned_cols=60 Identities=15% Similarity=-0.102 Sum_probs=38.8
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeCC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILLC 187 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITAS 187 (189)
..+|+++.=.-..-..=+..+...|.+.|++|+++|. +|...+--++. +.+.+ -|.++++
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~--~~~pd-~v~lS~~ 144 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK--KEKPL-MLTGSAL 144 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH--HcCCC-EEEEccc
Confidence 3578877644444444445667788999999999985 66666655553 45544 4666654
No 71
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=55.00 E-value=15 Score=33.63 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=29.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~ 157 (189)
.+|+|+.|.-+.|+.++.-+.+-|.++|++|.
T Consensus 68 ~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 68 SEVILLTDFDRAGRVYAKNIMEEFQSRGIKVN 99 (360)
T ss_pred CEEEEEECCCCCCCccchHHHHHHHHCCCEEE
Confidence 58999999999999999999999999999993
No 72
>PRK05569 flavodoxin; Provisional
Probab=52.87 E-value=76 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.017 Sum_probs=26.5
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEec
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
+|+|-|.+.. +.+.++++++++|.+.|++|....
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~ 37 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKH 37 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5778888774 678899999999999997765433
No 73
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=50.12 E-value=88 Score=25.47 Aligned_cols=58 Identities=9% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
+.+......|+.=+++.|.+.. + ....++.+-+|. +..|..++.+.|+..|+-|+...
T Consensus 27 ~~s~~~a~~iA~D~v~qL~~~y----p--PA~Tt~~l~q~~---~D~Fg~aL~~aLR~~GYaV~e~~ 84 (151)
T PRK13883 27 QASAADQQKLATDAVQQLATLY----P--PAQTRFELQQPT---PDAFGQALVKALRDKGYALLEYN 84 (151)
T ss_pred ccCHHHHHHHHHHHHHHHHHhC----C--CcceEEEEecCC---CcHHHHHHHHHHHHcCeEEEecC
Confidence 6788889999999999998764 2 345788887766 57899999999999999999654
No 74
>PRK05568 flavodoxin; Provisional
Probab=48.01 E-value=1e+02 Score=23.14 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=27.0
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
+|+|-|++.. +.+.+++++++++...|++|..+.+
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4778888874 6788999999999999987654433
No 75
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=46.83 E-value=79 Score=23.39 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=20.2
Q ss_pred EEEecCC-CChHHHHHHHHHHHHhCCCeEEEe
Q 029738 129 SLGKDPR-VSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 129 vVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
+|-|+++ -+.+.++++++++|.+.|++|..+
T Consensus 2 ~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~ 33 (140)
T TIGR01753 2 LIVYASMTGNTEEMANIIAEGLKEAGAEVDLL 33 (140)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3445554 356778888888888777766433
No 76
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=46.73 E-value=85 Score=24.84 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeE
Q 029738 96 TPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLV 156 (189)
Q Consensus 96 Tp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V 156 (189)
|-+.++.+|..+|+-..+. | -..||+++-.-..+-.++ ++++++.++|+++
T Consensus 75 N~~aA~~vG~lia~ra~~k-----g----i~~vVfdr~g~~yhgRV~-Ala~~AreaGL~f 125 (125)
T COG0256 75 NTEAAYLVGKLIAERALAK-----G----IEEVVFDRGGYKYHGRVA-ALADGAREAGLEF 125 (125)
T ss_pred CHHHHHHHHHHHHHHHHHc-----C----CcEEEEcCCCCCcchHHH-HHHHHHHHcCcCC
Confidence 5689999999999987765 3 257888887776665554 5689999999863
No 77
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=44.54 E-value=1.2e+02 Score=24.60 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
.++|......|+.=+...|.+.. + ....+|.+-+|. ..|..++.+.|+.-|+.|+-
T Consensus 32 ~~~t~~aa~~iA~D~vsqLae~~----p--Pa~tt~~l~q~~----d~Fg~aL~~aLr~~GYaVvt 87 (145)
T PRK13835 32 AELSGPAASAIAGDMVSRLAEQI----G--PGTTTIKLKKDT----SPFGQALEAALKGWGYAVVT 87 (145)
T ss_pred hhhcchHHHHHHHHHHHHHHHhc----C--CCceEEEEeecC----cHHHHHHHHHHHhcCeEEee
Confidence 46777778888888888887654 2 345789999998 28999999999999999985
No 78
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.03 E-value=1.2e+02 Score=24.85 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
..+|+++. |.+.-|. ..++..|...|++|+++|. +|...+--++. +.+.+ -|.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~---~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~~d-~v~lS~ 141 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGK---NLVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHKPD-ILGLSA 141 (201)
T ss_pred CCeEEEEecCCccchHHH---HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEec
Confidence 35787775 5554444 4456788999999999995 56666655553 44444 455554
No 79
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=43.42 E-value=20 Score=24.96 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=23.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
..|++..|+-..|+..+..+.+-|...|++|..+
T Consensus 47 ~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~v 80 (81)
T PF13662_consen 47 KEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTRV 80 (81)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHG---------
T ss_pred ceEEEEeCcCHHHHHHHHHHHHHHHhhccccccC
Confidence 5799999999999999999999999999998753
No 80
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=43.09 E-value=1.8e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~ 157 (189)
.+.+++.|+.... + .++|+|=+|.-..++.+.+++.+.|.+.|.++.
T Consensus 134 q~~~~~~~l~~~~----~----~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~ 180 (366)
T COG0683 134 QAAAAADYLVKKG----G----KKRVAIIGDDYAYGEGLADAFKAALKALGGEVV 180 (366)
T ss_pred HHHHHHHHHHHhc----C----CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEE
Confidence 5677888887663 2 258999999999999999999999999999744
No 81
>PRK06703 flavodoxin; Provisional
Probab=41.47 E-value=1.3e+02 Score=23.03 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=23.6
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhCCCeEEE
Q 029738 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 127 ~VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d 158 (189)
+|+|-|++. -+++.+++.+++.|.+.|++|..
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~ 35 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVL 35 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEE
Confidence 466777766 46788888888888888877643
No 82
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=40.97 E-value=1.7e+02 Score=25.35 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred cccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 62 ~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
-+..+.+.++-+..-..|+.|++.-|..|+...||.+.-.++.+...+... + +..|++|--. + -.-
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-------~----~~pvi~gv~~--~-t~~ 82 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-------G----RVPVLAGAGY--G-TAT 82 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------C----CCCEEEecCC--C-HHH
Confidence 345555555444444679999988787777778999988888777666542 1 2457777642 2 233
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 83 ~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 83 AIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 344577889999998754
No 83
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=40.04 E-value=1e+02 Score=26.71 Aligned_cols=50 Identities=24% Similarity=0.072 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
.+.+++.|+.+.. + ..+|.+-++.-..+..+...+.+.|...|++|....
T Consensus 124 ~~~~~a~~~~~~~----~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~ 173 (347)
T cd06335 124 QAPFLVDEAVKRG----G----FKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVE 173 (347)
T ss_pred HHHHHHHHHHHhc----C----CCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEe
Confidence 4567888876542 1 257888777778899999999999999999987644
No 84
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=39.28 E-value=32 Score=24.24 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=34.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHH
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPAC 167 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l 167 (189)
.+|+|+-|....+..+.+....-....|.++..+.+.+.+..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~ 44 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQ 44 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccc
Confidence 479999999999999888888877888999888766555443
No 85
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=39.26 E-value=1.1e+02 Score=25.82 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 95 LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
+.+.. ...+.++++|+.+.. + ..+|.|-+.....+..+.+.+.+.+.+.|++|+.
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~~----g----~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~ 168 (343)
T PF13458_consen 114 LSPSD-SQQAAALAEYLAKKL----G----AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVG 168 (343)
T ss_dssp SS--H-HHHHHHHHHHHHHTT----T----TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred Eeccc-cHHHHHHHHHHHHHc----C----CcEEEEEecCchhhhHHHHHHHHHHhhcCceecc
Confidence 44444 355778888876542 2 2466555555788999999999999999999863
No 86
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=38.93 E-value=56 Score=28.41 Aligned_cols=51 Identities=20% Similarity=0.072 Sum_probs=33.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAY 178 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a 178 (189)
.+|++|.=.-..-..=+.++..-|.++|++|+|+|. +|--.+.=.+ +.+++
T Consensus 105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a--~e~k~ 156 (227)
T COG5012 105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKA--KELKP 156 (227)
T ss_pred ceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHH--HHcCC
Confidence 678888755544445566677788999999999985 5544443333 34543
No 87
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=38.70 E-value=48 Score=24.74 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=30.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT 164 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT 164 (189)
+|+|+.|....|....+..+.-+...|.++..+-..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPP 38 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccC
Confidence 48999999999988888888877777888887755543
No 88
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=37.66 E-value=2e+02 Score=25.14 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChhH
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTPA 166 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP~ 166 (189)
..=||..++.+++.+++...+. |. ..-.|.|- .+ + -.+.+..+|.+.|++|..+ ...|.|-
T Consensus 158 KKsTpfAAQ~aae~aakka~~~-----GI--k~V~V~vK---Gp-G--gREtALRaL~~~GLkIt~I~DvTpiPH 219 (233)
T PTZ00090 158 LQQSERCAYRIGENIAKKCRRL-----GI--FAVDIKFR---RI-M--RVETVLQAFYANGLQVTQIIHEPRLPK 219 (233)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEe---CC-C--hHHHHHHHHHHCCCEEEEEEECCCCCc
Confidence 4678999999999999988764 31 11233332 12 2 2888999999999999987 6888775
No 89
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=37.06 E-value=2e+02 Score=24.20 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
..+.+++.|+.+.. + ..+|.+-++.-..+..+++.+.+.+.+.|++|.....
T Consensus 120 ~~~~~~~~~~~~~~----~----~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~ 171 (334)
T cd06342 120 QQGPAAAKYAVETL----K----AKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREG 171 (334)
T ss_pred HHHHHHHHHHHHhc----C----CCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEec
Confidence 45667788876542 2 2467666676788999999999999999999886543
No 90
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=36.89 E-value=2.5e+02 Score=24.10 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=53.3
Q ss_pred cccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChH
Q 029738 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (189)
Q Consensus 60 ~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~ 139 (189)
++-+..+...++-+..-..|+.|++-.|..|+...||.+.=.++.....+.... +..|++|--.-...+
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~~~st~~ 84 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAG-----------RVPVIAGVGANSTEE 84 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTT-----------SSEEEEEEESSSHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccC-----------ceEEEecCcchhHHH
Confidence 344555555555454556799999888877776789999988887777665432 245666644333333
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029738 140 SLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 140 ~la~ava~gL~a~Gi~V~d~ 159 (189)
. ...++-..+.|++.+.+
T Consensus 85 ~--i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 85 A--IELARHAQDAGADAVLV 102 (289)
T ss_dssp H--HHHHHHHHHTT-SEEEE
T ss_pred H--HHHHHHHhhcCceEEEE
Confidence 2 23355677888886654
No 91
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=36.81 E-value=1.2e+02 Score=25.41 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=38.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhh
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav 171 (189)
+|+||.-.-..+..+++.+...|...|+.|...+.-.++.++-++
T Consensus 2 ~I~ig~~~w~~~~~~a~i~~~~Le~~G~~v~~~~~~~~~~~~~al 46 (257)
T PF04069_consen 2 PIVIGSKNWTESQILAEIYAQLLEAAGYVVEVVNLGSTPVIFAAL 46 (257)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEESSHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHHHHHCCCeEEEecCCchHHHHHHH
Confidence 588999888889999999999999999977777888877776665
No 92
>PRK04017 hypothetical protein; Provisional
Probab=36.30 E-value=72 Score=25.39 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=30.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~ 157 (189)
..|+|-.|+-..|+.+++-+.+-|...|+.|-
T Consensus 66 r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 66 KEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 57999999999999999999999999999985
No 93
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=35.21 E-value=3.3e+02 Score=24.27 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC-CeEEEeccCChh
Q 029738 87 GEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG-CLVFDMGLATTP 165 (189)
Q Consensus 87 g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G-i~V~d~G~~pTP 165 (189)
|...+.-.++++.+.+++..+.....+.. .++.| --+|.+.+.+..++.+.+.... +.++ -+.-+.|
T Consensus 154 GG~s~~~~~~~~~~~~l~~~l~~~~~~~~----------~~~~v-ttSRRTp~~~~~~L~~~~~~~~~~~~~-~~~~~nP 221 (311)
T PF06258_consen 154 GGDSKHYRWDEEDAERLLDQLAALAAAYG----------GSLLV-TTSRRTPPEAEAALRELLKDNPGVYIW-DGTGENP 221 (311)
T ss_pred CcCCCCcccCHHHHHHHHHHHHHHHHhCC----------CeEEE-EcCCCCcHHHHHHHHHhhcCCCceEEe-cCCCCCc
Confidence 33455567888888888888888776541 23433 3477788888888877775443 3344 3444556
Q ss_pred HHHHhhhcCCCCCCceEEEeC
Q 029738 166 ACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 166 ~l~fav~~~~~~a~gGImITA 186 (189)
...|. +.+.-|.||+
T Consensus 222 y~~~L------a~ad~i~VT~ 236 (311)
T PF06258_consen 222 YLGFL------AAADAIVVTE 236 (311)
T ss_pred HHHHH------HhCCEEEEcC
Confidence 55443 2344577775
No 94
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=35.06 E-value=65 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHhCCCeEEEe
Q 029738 136 VSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 136 ~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
-+++++++.++++|.+.|++|..+
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~ 31 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVV 31 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeee
Confidence 357899999999999999876544
No 95
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=34.06 E-value=2.8e+02 Score=24.27 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||++.=.++.....+... + +..|++|-.. +-.
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~----~~pvi~gv~~---~t~ 88 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-------G----RVPVIAGAGG---GTA 88 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------C----CCcEEEecCC---CHH
Confidence 3445555665545555679999988787777778999998888777766542 1 2457777742 223
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
-+...++-..+.|++.+.+
T Consensus 89 ~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 89 QAIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 3444566778889987754
No 96
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=34.00 E-value=1.5e+02 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.024 Sum_probs=26.3
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHh-CCCeEEEe
Q 029738 127 KVSLGKDPR-VSGPSLSVAVFAGLAR-AGCLVFDM 159 (189)
Q Consensus 127 ~VvVGrD~R-~sS~~la~ava~gL~a-~Gi~V~d~ 159 (189)
+|+|-|.+. -+.+.+++++++++.+ .|++|..+
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~ 37 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIK 37 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 477777775 4588999999999998 89888544
No 97
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=33.79 E-value=1.8e+02 Score=21.16 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEec-CCCChHHHHHHHHHHHHhCCC
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKD-PRVSGPSLSVAVFAGLARAGC 154 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD-~R~sS~~la~ava~gL~a~Gi 154 (189)
.++|++.+++++.++++.+.... ...|.|--+ .........++++.++.-..+
T Consensus 64 ~~~~~~~~r~a~~~~~~~l~~~~---------~~~v~i~l~~~~~~~~~~~~~~~~g~~l~~Y 117 (126)
T PF02789_consen 64 EKLTAESLRKAGAAAARALKKLK---------VKSVAIDLPIDGENSDEAAEAAAEGALLGSY 117 (126)
T ss_dssp TGBCHHHHHHHHHHHHHHHHHTT----------SEEEEEGCSSBTTCHHHHHHHHHHHHHHT-
T ss_pred CcCCHHHHHHHHHHHHHHHhhCC---------ceEEEEeCcccccCcHHHHHHHHHHHHHcCc
Confidence 46999999999999999998742 256777766 334444888888888765443
No 98
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=32.82 E-value=3.2e+02 Score=23.72 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=57.0
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+..+-+..-..|+.|++.-|..|+...||.+.-.++.+...+... + +..|++|-- . + -.
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------g----~~pvi~gv~-~-~-t~ 86 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-------G----KVPVYTGVG-G-N-TS 86 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-------C----CCcEEEecC-c-c-HH
Confidence 3345555665444455689999988777777678999998888877766542 1 245777763 2 2 33
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
-+...++-..+.|++.+.+
T Consensus 87 ~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 87 DAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 4444567788889987754
No 99
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.70 E-value=3.2e+02 Score=23.47 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred cccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 62 ~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +..|++|--.- +-.-
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-----------~~~vi~gv~~~--s~~~ 81 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-----------RVPVIAGTGSN--ATEE 81 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCCc--cHHH
Confidence 3455555543333345899999877767766789999988887777665421 24577774222 2222
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+-.+++-..+.|++.+.+
T Consensus 82 ~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLV 99 (285)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 344456678889886654
No 100
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=31.75 E-value=2.3e+02 Score=24.61 Aligned_cols=50 Identities=10% Similarity=-0.161 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.+++++++.. + ..+++|.+|.-. .+..+.+.+.+.+...|++|...
T Consensus 122 ~~~~~a~~~~l~~~-----~----~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~ 172 (389)
T cd06352 122 RKLGEAVLALLRWF-----N----WHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHV 172 (389)
T ss_pred HHHHHHHHHHHHHc-----C----ceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEE
Confidence 45677888887643 2 256777666555 78899999999999999998754
No 101
>PF13362 Toprim_3: Toprim domain
Probab=31.45 E-value=1.7e+02 Score=20.70 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.0
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHhCCCeEEEecc
Q 029738 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 126 ~~VvVGrD~R~s--S~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
.+|+|.-|.-.. |...+..+++.|.+.|+.+..+-.
T Consensus 42 ~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 42 RRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 579999999998 999999999999999999887644
No 102
>PRK08105 flavodoxin; Provisional
Probab=31.21 E-value=1.7e+02 Score=22.89 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=36.7
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCC
Q 029738 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCY 188 (189)
Q Consensus 127 ~VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASH 188 (189)
+|.|-|-+. -+++.+++.+++.|...|++|..+.+-. + ... ...+++.-|.||+++
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~---~--~~~-~~~~~~~vi~~~sT~ 59 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE---L--SDW-QPYQDELVLVVTSTT 59 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh---C--Cch-hcccCCeEEEEECCC
Confidence 455656555 4789999999999999999987654311 1 111 122346678888876
No 103
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=31.20 E-value=1.8e+02 Score=22.70 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 99 AVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 99 ~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
....||.=++..|.+.. + ....++.+- ......|..++.+.|+..|+-|+...
T Consensus 4 ~~~~iA~D~v~qL~~~y----p--PA~Tt~~L~---q~~~d~Fg~aL~~~LR~~GYaV~e~~ 56 (121)
T PF07283_consen 4 DAQAIAGDMVSQLAEQY----P--PAKTTFELK---QKDPDPFGQALENALRAKGYAVIEDD 56 (121)
T ss_pred HHHHHHHHHHHHHHHhc----C--CCccEEEEE---cCCCChHHHHHHHHHHhcCcEEEecC
Confidence 34556666667776654 2 345678884 24556899999999999999999764
No 104
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=31.12 E-value=1.3e+02 Score=24.22 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHh
Q 029738 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMS 170 (189)
Q Consensus 95 LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fa 170 (189)
++...+.+++..+..+..+. + ..|++ |+-.+.+....-+++.+.++|++|..+-+..-|.+++.
T Consensus 73 ~~~~~a~~~~~~~~~~a~~~-----~-----~nii~--E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~ 136 (199)
T PF06414_consen 73 LTQKEASRLAEKLIEYAIEN-----R-----YNIIF--EGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIE 136 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----T-------EEE--E--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C-----CCEEE--ecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHH
Confidence 44455666666655555543 1 33444 88888777777789999999999987766666777764
No 105
>PLN02739 serine acetyltransferase
Probab=30.96 E-value=38 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCC
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR 135 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R 135 (189)
.|+|+++..+++.+|+..+..+ ++|.+|+|..
T Consensus 322 ~DaT~e~~~~Ia~ay~~lf~~g-----------~sI~~g~~~~ 353 (355)
T PLN02739 322 YDATREFFQNVAVAYRETIPNG-----------SSVSGSCREK 353 (355)
T ss_pred hhhhHHHHHHHHHHHHhhccCC-----------CeEEeecccc
Confidence 4799999999999999987642 6899999864
No 106
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=30.68 E-value=1.7e+02 Score=23.31 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 98 SAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 98 ~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
..+..++..+++.++... + .++-+++|| ..|-.++-.+++-|.+.|.+|-.+.
T Consensus 46 ~si~~la~~y~~~I~~~~----~---~gp~~L~G~---S~Gg~lA~E~A~~Le~~G~~v~~l~ 98 (229)
T PF00975_consen 46 DSIEELASRYAEAIRARQ----P---EGPYVLAGW---SFGGILAFEMARQLEEAGEEVSRLI 98 (229)
T ss_dssp SSHHHHHHHHHHHHHHHT----S---SSSEEEEEE---THHHHHHHHHHHHHHHTT-SESEEE
T ss_pred CCHHHHHHHHHHHhhhhC----C---CCCeeehcc---CccHHHHHHHHHHHHHhhhccCceE
Confidence 357778888888887653 1 236688887 5799999999999999999885443
No 107
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=30.58 E-value=3.4e+02 Score=23.43 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=51.8
Q ss_pred ccccChhHHhhhhhccc-cceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChH
Q 029738 61 EVVVDEEMDRIRRLQNG-SDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFgg-sGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~ 139 (189)
+-+..+.+..+-+..-. .|+.|++..|..|+...||.+.-.++.+...+.... +..|++|=-. .+-
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-----------~~~viagvg~--~~t 85 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-----------KVKLIAQVGS--VNT 85 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-----------CCCEEecCCC--CCH
Confidence 34455555554444445 899999888877776789999888877777665431 1345555422 122
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029738 140 SLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 140 ~la~ava~gL~a~Gi~V~d~ 159 (189)
.-+...++-..+.|++.+.+
T Consensus 86 ~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 86 AEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 22233345556777776543
No 108
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=30.44 E-value=1.4e+02 Score=25.86 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
.+.++++|+.+. + .++|.|-+|.-..+..+.+.+.+.+.+.|.+|....
T Consensus 111 ~~~~~~~~~~~~-----g----~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~ 159 (336)
T cd06339 111 EARRAAEYARSQ-----G----KRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIE 159 (336)
T ss_pred HHHHHHHHHHhc-----C----ccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeE
Confidence 456788888654 2 256777777777899999999999999999988653
No 109
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.32 E-value=2.2e+02 Score=20.81 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=17.6
Q ss_pred EecCCCChHHHHHHHHHHHHhCCCeEEEeccC
Q 029738 131 GKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (189)
Q Consensus 131 GrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~ 162 (189)
+-|.+.-+. ..++..|...|++|+++|.-
T Consensus 8 ~~e~H~lG~---~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 8 GGDGHDIGK---NIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CCchhhHHH---HHHHHHHHHCCCEEEECCCC
Confidence 334444443 34556677788888888744
No 110
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.98 E-value=3.4e+02 Score=22.96 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=52.0
Q ss_pred ccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHH
Q 029738 63 VVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLS 142 (189)
Q Consensus 63 ~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la 142 (189)
+..+.+.++-+..-..|+.|++.-|..|+.-.||.+.-.++.+...+.... +..|++|- +..+-+ =+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-----------~~~vi~gv-~~~~~~-~~ 81 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-----------RVPVIAGV-GANSTR-EA 81 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEec-CCccHH-HH
Confidence 344444443333345699999887777776789999888887777776431 13455554 222222 23
Q ss_pred HHHHHHHHhCCCeEEEe
Q 029738 143 VAVFAGLARAGCLVFDM 159 (189)
Q Consensus 143 ~ava~gL~a~Gi~V~d~ 159 (189)
..+++...+.|++.+.+
T Consensus 82 i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 82 IELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 44456678888887654
No 111
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.84 E-value=61 Score=30.53 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhh
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST 171 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav 171 (189)
+-+||||.+. |.|+-.++. ..+||||-+.+..+..+.+.....+. ..+.++..++...-++-|+.
T Consensus 145 v~~NPEFLRE-G~Av~D~~~------------PdRIViG~~~~~a~~~~~ely~~~~~-~~~p~l~t~~~~AE~IKyaa 209 (414)
T COG1004 145 VASNPEFLRE-GSAVYDFLY------------PDRIVIGVRSERAAAVLRELYAPFLR-QDVPILFTDLREAELIKYAA 209 (414)
T ss_pred EecChHHhcC-cchhhhccC------------CCeEEEccCChhHHHHHHHHHhhhhh-cCCCEEEecchHHHHHHHHH
Confidence 4678888664 555555543 25899999998888888887777777 88999988888877777764
No 112
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.74 E-value=98 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCeEEEEecCCCChHHHHHH------------HHHHHHhCCCeEEEeccCChhH---------HHHhhhcCCCCCCce
Q 029738 125 DVKVSLGKDPRVSGPSLSVA------------VFAGLARAGCLVFDMGLATTPA---------CFMSTLLPPFAYDAS 181 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~a------------va~gL~a~Gi~V~d~G~~pTP~---------l~fav~~~~~~a~gG 181 (189)
...|++++|++..+..=+.. +...+...|++-..+....||. ..+++. .++|+..|
T Consensus 148 ~aaIiLaFnp~dpsv~gr~~~l~~gg~~~~~gll~~ae~~GI~~pliD~avtplg~g~g~a~r~~~a~K-~k~G~PvG 224 (314)
T TIGR01114 148 SAAIVLAFNPMDPTVEGKIDILEVGGGTSDKGMLEIAEECGIKYPLIDVAVTPLGAGAGAAVRSSFAVK-AKFGLPVG 224 (314)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecccccCCCCCccHHHHHHHHHH-HHhCCCcC
Confidence 46799999999887764444 6667888999987766666655 445554 46776544
No 113
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.69 E-value=2.4e+02 Score=23.91 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+.++++|+.+. + .++|.|-++.-..+..+.+++.+.+...|++|...
T Consensus 124 ~~~~l~~~~~~~-----~----~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 171 (312)
T cd06346 124 QGQALAQLAAER-----G----YKSVATTYINNDYGVGLADAFTKAFEALGGTVTNV 171 (312)
T ss_pred HHHHHHHHHHHc-----C----CCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEE
Confidence 466777887654 2 25777767777789999999999999999998753
No 114
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=29.50 E-value=2.2e+02 Score=25.15 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 104 AESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 104 a~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
+.++++|+.++. + .++|.+-++....++.+.+.+.+.+.+.|.+|....
T Consensus 148 ~~~~~~~~~~~~----~----~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~ 196 (369)
T PRK15404 148 GPTAAKYILEKV----K----PKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFE 196 (369)
T ss_pred HHHHHHHHHHhc----C----CCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEE
Confidence 456788876542 2 257777777777899999999999999999987543
No 115
>PRK07308 flavodoxin; Validated
Probab=29.46 E-value=2.6e+02 Score=21.31 Aligned_cols=30 Identities=13% Similarity=-0.054 Sum_probs=21.1
Q ss_pred EEEEecCC-CChHHHHHHHHHHHHhCCCeEE
Q 029738 128 VSLGKDPR-VSGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 128 VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~ 157 (189)
|.|-|+++ -+.+.++++++++|...|++|.
T Consensus 4 ~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~ 34 (146)
T PRK07308 4 AKIVYASMTGNTEEIADIVADKLRELGHDVD 34 (146)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhCCCceE
Confidence 55556666 3677788888888888776653
No 116
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=29.40 E-value=46 Score=27.26 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=31.3
Q ss_pred EecCCCChHHHHHHHHHHHHh---CCCeEEEeccCChhHHHHhhhcCCCCCCceEEE
Q 029738 131 GKDPRVSGPSLSVAVFAGLAR---AGCLVFDMGLATTPACFMSTLLPPFAYDASIMI 184 (189)
Q Consensus 131 GrD~R~sS~~la~ava~gL~a---~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImI 184 (189)
+.+.|++...+.+++...|.. .|..|+|+- +-|-++.+..+ ..||.-.+.|
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLF-aGSGalGlEAL--SRGA~~v~fV 71 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLF-AGSGALGLEAL--SRGAKSVVFV 71 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT--TTSHHHHHHH--HTT-SEEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcC-CccCccHHHHH--hcCCCeEEEE
Confidence 678999999999999999996 499999971 11233333332 3456555554
No 117
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=29.06 E-value=3.3e+02 Score=22.66 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecC-CCChHHHHHHHHHHHHhCCCeEEEeccC
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP-RVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~-R~sS~~la~ava~gL~a~Gi~V~d~G~~ 162 (189)
..|+.++.++..... ...-....|+|=.|. +..........++.|...|..|+.+.+.
T Consensus 130 Tdi~~aL~~~~~~~~----~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 130 TDIGQALREFLRQYA----RPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cHHHHHHHHHHHHhh----cccccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 346667776665432 000024679999999 7777777777789999999999987654
No 118
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=29.05 E-value=2.7e+02 Score=22.26 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
..+.+++.+++.. + -.+|++-+|....+..+.+.+.+.+...|+.|......+
T Consensus 126 ~~~~a~~~~l~~~-----~----w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 178 (298)
T cd06269 126 SQAQAIVDLLKHF-----G----WTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIP 178 (298)
T ss_pred HHHHHHHHHHHHC-----C----CeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcC
Confidence 6778888888654 3 257888888888999999999999999999988765444
No 119
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.46 E-value=2.5e+02 Score=20.95 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=27.8
Q ss_pred ecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 132 KDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 132 rD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
-|.+.-+..+ ++..|...|++|+++|. +|...+.-++. +.+++ .|.|+.
T Consensus 9 gd~H~lG~~~---~~~~l~~~G~~vi~lG~~vp~e~~~~~a~--~~~~d-~V~iS~ 58 (122)
T cd02071 9 LDGHDRGAKV---IARALRDAGFEVIYTGLRQTPEEIVEAAI--QEDVD-VIGLSS 58 (122)
T ss_pred CChhHHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEcc
Confidence 3444444433 44568889999999985 55555544442 44443 344443
No 120
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.70 E-value=3.2e+02 Score=21.82 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEe
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMIL 185 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImIT 185 (189)
-.++|+..-+..+.-.+.+++.+.+.|-+++.+|+ +|.-.....-. +.....+|+|+
T Consensus 75 l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~--~~~l~~~v~i~ 132 (172)
T PF03808_consen 75 LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH--RQRLPAGVIIG 132 (172)
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH--HHHCCCCEEEE
Confidence 45677766666888888999999999999999996 55555433332 22234446665
No 121
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.18 E-value=1.6e+02 Score=23.39 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe--ccCChhHHH
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM--GLATTPACF 168 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~--G~~pTP~l~ 168 (189)
.|++.+++||.++. ...-|++||.+...... ....+-|.+.|++|... .+.-...+.
T Consensus 11 glg~~la~~La~~~--------~~~~il~~r~~~~~~~~--~~~i~~l~~~g~~v~~~~~Dv~d~~~v~ 69 (181)
T PF08659_consen 11 GLGQSLARWLAERG--------ARRLILLGRSGAPSAEA--EAAIRELESAGARVEYVQCDVTDPEAVA 69 (181)
T ss_dssp HHHHHHHHHHHHTT---------SEEEEEESSGGGSTTH--HHHHHHHHHTT-EEEEEE--TTSHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCEEEEeccCCCccHHH--HHHHHHHHhCCCceeeeccCccCHHHHH
Confidence 48889999998763 23457888884222211 13577788899999865 444444443
No 122
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=27.11 E-value=2.2e+02 Score=25.41 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
...+.+++.|+.+.. .++|.+-++....+..+.+.+.+.+.+.|.+|+.
T Consensus 113 ~~~~~ala~~~~~~g---------~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 161 (347)
T TIGR03863 113 AMLADALAQYLAAKR---------WRRILLIQGPLPADALYADAFRRSAKRFGAKIVA 161 (347)
T ss_pred HhHHHHHHHHHHHcC---------CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEE
Confidence 346678888887542 2678888888889999999999999999999875
No 123
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=26.22 E-value=2.6e+02 Score=24.03 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEec
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
.+.++++|+.+.. + .+|.+=+.....+..+.+.+.+.|...|++|....
T Consensus 119 ~~~~~~~~~~~~~----~-----~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~ 167 (334)
T cd06356 119 QFSTLVPYMMEKY----G-----KKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEE 167 (334)
T ss_pred HHHHHHHHHHHcc----C-----CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeee
Confidence 3567788877542 2 35655556667888899999999999999997543
No 124
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=26.10 E-value=2.2e+02 Score=24.21 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.+++.|+.+.. ..+|++-++....+..+.+.+.+.+.+.|.+|...
T Consensus 120 ~~~~~~~~~~~~~~~---------~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 169 (334)
T cd06327 120 YMLANGTAPALVKAG---------GKKWFFLTADYAFGHSLERDARKVVKANGGKVVGS 169 (334)
T ss_pred HHHHHHHHHHHHHhc---------CCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCc
Confidence 456677888877652 25677767777889999999999999999998754
No 125
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.03 E-value=4.3e+02 Score=22.77 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccChhHHhhhhhcccc-ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 63 VVDEEMDRIRRLQNGS-DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 63 ~~~~~m~~~~~lFggs-GIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
+..+.+.++-+..-.. |+.|++..|..|+...||.+.=.++.+...+.... +..|++|--. .+ -.-
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-----------~~~viagv~~-~~-~~~ 84 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-----------KVTLIAHVGS-LN-LKE 84 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCeEEeccCC-CC-HHH
Confidence 4445555544444457 99998887777776789998888877777665421 2356665433 22 222
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+...++-..+.|++.+.+
T Consensus 85 ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 85 SQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 333456667888887653
No 126
>PRK09004 FMN-binding protein MioC; Provisional
Probab=25.92 E-value=3.2e+02 Score=21.26 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=34.0
Q ss_pred EEEEecCC-CChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCC
Q 029738 128 VSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCY 188 (189)
Q Consensus 128 VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASH 188 (189)
|.|-|=+. -+++.+++.+++.|.+.|++|..+.... | .-+ .+.+.-|.+|+++
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-~----~~l---~~~~~li~~~sT~ 57 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-L----DDL---SASGLWLIVTSTH 57 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-H----HHh---ccCCeEEEEECCC
Confidence 44444444 4688899999999999998876554332 1 111 2346677778776
No 127
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=25.79 E-value=1.4e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=26.3
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhC-CCeEEEe
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARA-GCLVFDM 159 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~-Gi~V~d~ 159 (189)
+|+|-|.++. +.+.+++++++++.+. |++|..+
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~ 36 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVK 36 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4778888874 6788999999999986 9887644
No 128
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=25.61 E-value=3.4e+02 Score=21.54 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecC---CCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP---RVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~---R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
..-||..++..++.+++...+. |. ..-.|.|--.+ ..+--.=.+.++.+|...|++|..+ ...|.|
T Consensus 48 kK~TpyAAq~aae~~~~~~~~~-----Gi--~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP 117 (132)
T PRK09607 48 DESSPYAAMQAAEKAAEDAKEK-----GI--TGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 117 (132)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4789999999999999988764 31 12234442211 1111123566789999999999988 577777
No 129
>PRK10646 ADP-binding protein; Provisional
Probab=25.48 E-value=1.5e+02 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHH
Q 029738 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGL 149 (189)
Q Consensus 95 LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL 149 (189)
-+++...++|+.+|..++.+ ..|.+--|--..=-.|.++++++|
T Consensus 9 ~s~~~t~~l~~~la~~l~~g-----------~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 9 PDEQATLDLGARVAKACDGA-----------TVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCC-----------cEEEEECCCCCCHHHHHHHHHHHc
Confidence 36788899999999988532 345555565555566888888887
No 130
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.42 E-value=3.3e+02 Score=23.82 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
...+.++++|+.+.... + ...++|.|=++.-..+..+.+.+.+.+.+.|++|.....
T Consensus 120 ~~~~~~l~~~~~~~~~~--~--~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~ 176 (351)
T cd06334 120 SDQARALVQYIAEQEGG--K--LKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPV 176 (351)
T ss_pred HHHHHHHHHHHHHhccc--C--CCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeecc
Confidence 34566788888654200 0 013678777777889999999999999999999886543
No 131
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=25.41 E-value=1.2e+02 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=22.3
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEE
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~ 157 (189)
+++|-|.++. +.+.+++.+++.|...|++|.
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEE
Confidence 3667777775 567788888888887777653
No 132
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.17 E-value=4.3e+02 Score=22.49 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=51.7
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-++.+.+.++-+..-..|+.|++..|..|+...||.+.=.++.+...+.... +..|++|==. .+..
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-----------~~~vi~gv~~--~~~~ 82 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-----------RVPVIAGTGS--NNTA 82 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcEEeccCC--ccHH
Confidence 34455555554444446889998877766666689999988887777765421 1234444322 1223
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
-+...++-..+.|++.+.+
T Consensus 83 ~~~~~a~~a~~~G~d~v~~ 101 (284)
T cd00950 83 EAIELTKRAEKAGADAALV 101 (284)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3344456667778885543
No 133
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=24.87 E-value=2.7e+02 Score=23.59 Aligned_cols=50 Identities=16% Similarity=-0.032 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.+++.+++.. + -.+|.+-++....+..+.+.+.+.+...|++|...
T Consensus 145 ~~~~~a~~~~~~~~-----~----~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~ 194 (348)
T cd06350 145 TSQALAIVALLKHF-----G----WTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFV 194 (348)
T ss_pred HHHHHHHHHHHHHC-----C----CeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEE
Confidence 34677888887643 2 25677767666678999999999999999998764
No 134
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=24.80 E-value=3.1e+02 Score=20.67 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
..-|+..+..+++.+++.+.+. |. ..-.|.+ +-. |+ -.+++..+|...|+++..+ ...|.|
T Consensus 38 rk~t~~Aa~~~a~~~~~~~~~~-----gi--~~v~v~~-kG~---G~-gr~~~ir~l~~~glkI~~I~D~T~ip 99 (108)
T TIGR03632 38 KKSTPYAAQLAAEDAAKKAKEF-----GM--KTVDVYV-KGP---GA-GRESAIRALQAAGLEVTSIKDVTPIP 99 (108)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-ECC---CC-cHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 4788999999999999988764 31 1122333 332 22 2577889999999999877 566665
No 135
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=24.47 E-value=1.3e+02 Score=27.07 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=46.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCC-----hHHHHHHHHH
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-----GPSLSVAVFA 147 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~s-----S~~la~ava~ 147 (189)
+++.+.|+.-.+. .+||.+++..-++.|.+.+.+.. ....|+||.|.|.. +..+.+.
T Consensus 79 ~~l~~~gvd~~~v-------~~F~~~fa~ls~~~Fv~~lv~~l--------~~k~ivvG~DF~FGk~~~g~~~~L~~--- 140 (304)
T COG0196 79 RLLAGYGVDALVV-------LDFDLEFANLSAEEFVELLVEKL--------NVKHIVVGFDFRFGKGRQGNAELLRE--- 140 (304)
T ss_pred HHHHhcCCcEEEE-------EeCCHhHhhCCHHHHHHHHHhcc--------CCcEEEEecccccCCCCCCCHHHHHH---
Confidence 3456788887776 48999999999999999665542 23569999999953 3333222
Q ss_pred HHHhCCCeEEEe
Q 029738 148 GLARAGCLVFDM 159 (189)
Q Consensus 148 gL~a~Gi~V~d~ 159 (189)
+...|++|..+
T Consensus 141 -~~~~gf~v~~v 151 (304)
T COG0196 141 -LGQKGFEVTIV 151 (304)
T ss_pred -hccCCceEEEe
Confidence 22228888764
No 136
>CHL00041 rps11 ribosomal protein S11
Probab=24.02 E-value=3.3e+02 Score=20.81 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
..-|+..+..+++.+++.+.+. |. ..-.|.| +-. | .-.+++..+|...|+.+..+ ...|.|
T Consensus 51 rK~T~~Aa~~~a~~~~~~~~~~-----gi--~~v~I~i-kG~---G-~Gr~~~ir~l~~~glkI~~I~D~Tpip 112 (116)
T CHL00041 51 RKGTPFAAQTAAENAIRTVIDQ-----GM--KRAEVMI-KGP---G-LGRDTALRAIRRSGLKLSSIRDVTPMP 112 (116)
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--cEEEEEE-ECC---C-CcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 3678999999999999998875 21 1223444 211 1 23466789999999999877 566665
No 137
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.86 E-value=3.9e+02 Score=21.59 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCChH--HHHHHHHHHHHhCCCeEEEeccCC
Q 029738 125 DVKVSLGKDPRVSGP--SLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~--~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
.+-++|=-|++...+ .-....++.|+..|+.|+-+|+..
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 345788999998764 223344778999999999987654
No 138
>PRK09273 hypothetical protein; Provisional
Probab=23.86 E-value=2.4e+02 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEecc
Q 029738 139 PSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 139 ~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
+.+.+.+.+.|...|.+|+|+|.
T Consensus 16 ~~i~~~L~~~L~~~G~eV~D~G~ 38 (211)
T PRK09273 16 AIIYEALKKVADPKGHEVFNYGM 38 (211)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCC
Confidence 44777888888888999998885
No 139
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.77 E-value=3.8e+02 Score=22.77 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+.++++|+.+.. + ..+|.+-++....+..+...+.+.|.+.|++|...
T Consensus 121 ~~~~~~~~~~~~~----~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~ 169 (340)
T cd06349 121 EAPLLADYAVKDL----G----FKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAH 169 (340)
T ss_pred HHHHHHHHHHHHc----C----CcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEE
Confidence 3457888875442 2 25676766667889999999999999999999854
No 140
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.62 E-value=2.8e+02 Score=23.87 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
..+.++++|+.+.. + ..+|.+-++.-..+..+.+.+.+.+...|++|...
T Consensus 129 ~~~~~~~~~~~~~~----g----~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 178 (362)
T cd06343 129 DEARIYAKYLVEEK----P----NAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAE 178 (362)
T ss_pred HHHHHHHHHHHHhC----C----CceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35567888876542 2 24666656666778899999999999999997643
No 141
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=22.98 E-value=2.4e+02 Score=18.90 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=29.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
.+|+|..|.-..|...++.+.+.+.+.|+.+..
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 579999999999999999999999998887764
No 142
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.74 E-value=1.3e+02 Score=20.02 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
..|+|..|+-..|+.++..+.+.|...|
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~~~ 75 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKPAG 75 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhhhc
Confidence 4699999999999999999998887765
No 143
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.61 E-value=5.5e+02 Score=22.85 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHH
Q 029738 68 MDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFA 147 (189)
Q Consensus 68 m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~ 147 (189)
++...+.+...+++-++-.| |.+.-|+++...+|-.++.+.+.. ...|.+--++..-.+ ..++
T Consensus 40 i~~~~~~~~~~~v~~iyfGG--GTPs~l~~~~l~~ll~~i~~~~~~-----------~~eitiE~nP~~~~~----e~l~ 102 (350)
T PRK08446 40 LKFELEQFTDEKIESVFIGG--GTPSTVSAKFYEPIFEIISPYLSK-----------DCEITTEANPNSATK----AWLK 102 (350)
T ss_pred HHHHHhhccCCceeEEEECC--CccccCCHHHHHHHHHHHHHhcCC-----------CceEEEEeCCCCCCH----HHHH
Confidence 44333334444677666543 334468889899988888776321 134555555543333 3356
Q ss_pred HHHhCCCeEEEecc
Q 029738 148 GLARAGCLVFDMGL 161 (189)
Q Consensus 148 gL~a~Gi~V~d~G~ 161 (189)
.|.++|++-+.+|+
T Consensus 103 ~l~~~GvnRiSiGv 116 (350)
T PRK08446 103 GMKNLGVNRISFGV 116 (350)
T ss_pred HHHHcCCCEEEEec
Confidence 67777888777774
No 144
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.57 E-value=4.4e+02 Score=24.26 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=71.6
Q ss_pred ccCCCCCCCCCCCcccccccccccccceeeeeeecccccccccc---cChhHHhhhhhccc---cceeeeeccCCCCCCC
Q 029738 20 FLSSPGPKCPKPFQITGLKLPFLSHSIKFTHVKSSVTDKYNEVV---VDEEMDRIRRLQNG---SDVRGVALEGEKGRTV 93 (189)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~m~~~~~lFgg---sGIRGi~~~g~~~~~~ 93 (189)
+-++-+.-++++|+.+.-...+||+.++-...... +.+.+ +++-....+.=+.. ....+++.|
T Consensus 15 LWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~----~~~~~vVtne~~~f~v~eql~e~~~~~~~~illE------- 83 (333)
T COG0836 15 LWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGD----IEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILE------- 83 (333)
T ss_pred cCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCC----ccCeEEEeCHHHHHHHHHHHhhhhhccccceEec-------
Confidence 33344556677888887678888887776544332 22222 22211111111111 223336654
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHH--HHhCCCeEEEeccCCh-hHHHH
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAG--LARAGCLVFDMGLATT-PACFM 169 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-sS~~la~ava~g--L~a~Gi~V~d~G~~pT-P~l~f 169 (189)
....+++-.|+.|.-...++. + ...-+|+--|... .-+.|.+++..+ ++..| ..+-+|+.|| |.--|
T Consensus 84 P~gRnTApAIA~aa~~~~~~~-----~---d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-~lVTfGI~Pt~PeTGY 154 (333)
T COG0836 84 PEGRNTAPAIALAALSATAEG-----G---DALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-GIVTFGIPPTRPETGY 154 (333)
T ss_pred cCCCCcHHHHHHHHHHHHHhC-----C---CcEEEEecCcceeccHHHHHHHHHHHHHHHHcC-CEEEEecCCCCCccCc
Confidence 233345555555444433332 1 1235677889885 455788888765 66778 6777898887 55555
Q ss_pred hh
Q 029738 170 ST 171 (189)
Q Consensus 170 av 171 (189)
..
T Consensus 155 GY 156 (333)
T COG0836 155 GY 156 (333)
T ss_pred ce
Confidence 44
No 145
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=22.34 E-value=1.2e+02 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhH
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPA 166 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~ 166 (189)
.-|++|.|...+++.+...+.+.....|.+++.++...|+.
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 45678999999998888877777666799999988777665
No 146
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=22.29 E-value=7.2e+02 Score=26.67 Aligned_cols=56 Identities=21% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
..+|++|- |-+.-|. ..+.-.|..+|++|+|+|. +|...+--++. +.+++ -|.+++
T Consensus 732 ~gkVvlaTV~GDvHDIGK---nIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~--e~~~d-iVgLS~ 791 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGK---NIVGVVLSCNGYEVVDLGVMVPIEKILEAAK--DHNAD-VIGLSG 791 (1178)
T ss_pred CCeEEEEecCCCccHHHH---HHHHHHHHhCCCEEEECCCCCCHHHHHHHHH--HhCCC-EEEEcC
Confidence 46888885 5555554 4456678999999999994 77777766663 45544 344443
No 147
>PRK06696 uridine kinase; Validated
Probab=21.95 E-value=4.1e+02 Score=21.80 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCh-H-HHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSG-P-SLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS-~-~la~ava~gL~a~Gi~V~d~ 159 (189)
..++||-|+...| + .|++.+++.|...|+.|+.+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~ 56 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA 56 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4678888888644 3 38999999999999888763
No 148
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=21.95 E-value=4.9e+02 Score=21.95 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=43.7
Q ss_pred eEEEEec------CCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhh----h-cCCCCCCceEEEeCCC
Q 029738 127 KVSLGKD------PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMST----L-LPPFAYDASIMILLCY 188 (189)
Q Consensus 127 ~VvVGrD------~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav----~-~~~~~a~gGImITASH 188 (189)
-++|+.. .|..+..=++++++.|...|++|...--++.-.+.-.+ . ..+.+++..+++-+||
T Consensus 11 alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sH 83 (241)
T smart00115 11 ALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSH 83 (241)
T ss_pred EEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCC
Confidence 4666665 67788888999999999999999876545544443222 1 1133578889999999
No 149
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=21.52 E-value=1.4e+02 Score=27.00 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=41.3
Q ss_pred CCeEEEEecCCCChHHHHHH------------HHHHHHhCCCeEE--EeccCChhH-HH------HhhhcCCCCCCceEE
Q 029738 125 DVKVSLGKDPRVSGPSLSVA------------VFAGLARAGCLVF--DMGLATTPA-CF------MSTLLPPFAYDASIM 183 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~a------------va~gL~a~Gi~V~--d~G~~pTP~-l~------fav~~~~~~a~gGIm 183 (189)
...|++++|....+..=+.. +...+...|++-. |.+..|.|. .. +++. .++|+..|
T Consensus 143 ~aaIvLaFn~~d~s~~gr~~~le~~~~~~~kgll~~a~e~GI~~~LvD~~v~plgsg~g~s~r~~~~vK-~~~G~P~G-- 219 (296)
T PF02007_consen 143 DAAIVLAFNPMDPSVEGRIEMLENGGGGQDKGLLDIAEECGIENPLVDTAVTPLGSGAGISIRAIFAVK-AKFGYPVG-- 219 (296)
T ss_pred CEEEEEecCCCCCChhhhHHHHhccCcccccchHHHHHHcCCcceeecccccCCcccchHHHHHHHHHH-HHhCCCcc--
Confidence 46799999999888754433 3345678899865 456677666 22 3443 56788777
Q ss_pred EeCCCC
Q 029738 184 ILLCYR 189 (189)
Q Consensus 184 ITASHN 189 (189)
.|.||
T Consensus 220 -~a~hN 224 (296)
T PF02007_consen 220 -CAIHN 224 (296)
T ss_pred -ccccc
Confidence 66776
No 150
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=21.48 E-value=1.7e+02 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=30.4
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+|++++|+-..|...+.-+.+.|...|++|..+
T Consensus 155 ~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 155 EKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5799999999999999999999999999997543
No 151
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.34 E-value=4.4e+02 Score=22.12 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.++++|+.+. | ..+|.+-++....+....+++.+.+.+.|.++...
T Consensus 121 ~~~~~~~~~~l~~~-----g----~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 170 (336)
T cd06326 121 ADEIAAIVRHLVTL-----G----LKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVAT 170 (336)
T ss_pred HHHHHHHHHHHHHh-----C----CceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEE
Confidence 34567788888764 2 24554444555678888999999999999886543
No 152
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.17 E-value=4.1e+02 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+|.+-+|....+..+..++.+.+...|++|...
T Consensus 145 ~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~ 178 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSV 178 (344)
T ss_pred ceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEE
Confidence 5788888888899999999999999999998763
No 153
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=20.70 E-value=4.2e+02 Score=22.61 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.++++++... + -.+|.+-++.-..+..+.+.+.+.+...|++|...
T Consensus 120 ~~~~~a~~~~~~~~-----~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~ 169 (350)
T cd06366 120 SSQNPAIAALLKKF-----G----WRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYR 169 (350)
T ss_pred HhHHHHHHHHHHHC-----C----CcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEE
Confidence 44677788887643 2 24666666555678888999999999999998754
No 154
>PF11774 Lsr2: Lsr2 ; InterPro: IPR024412 This entry represents Lsr2, which is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homologue of the H-NS-like proteins []. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression [, ].; PDB: 4E1R_B 4E1P_B 2KNG_A.
Probab=20.66 E-value=1.5e+02 Score=22.57 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=40.8
Q ss_pred ceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEe---c------CCCChHHHHHHHHHHH
Q 029738 79 DVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGK---D------PRVSGPSLSVAVFAGL 149 (189)
Q Consensus 79 GIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGr---D------~R~sS~~la~ava~gL 149 (189)
++.|+--+ .||+++++.+|-.+|+.|+.... ++- |+ . .+.....-..++-+-.
T Consensus 25 ~ldG~~Ye------IDLs~~na~~lr~~l~~yi~~ar-----------r~~-g~~~~~~~~~~~~~~~~~~~~~~IR~WA 86 (110)
T PF11774_consen 25 GLDGVDYE------IDLSAENAAKLRDALAPYIAAAR-----------RVG-GRARRRRRRARSAAAAPREDTAAIREWA 86 (110)
T ss_dssp EETTEEEE------EEE-HHHHHHHHHHHHHHHHHSE-----------EE----------SSGGG---SSTHHHHHHHHH
T ss_pred EECCeEEE------EECCHHHHHHHHHHHHHHHHHhe-----------Ecc-ccccccccCccccCCCCccchHHHHHHH
Confidence 34565543 69999999999999999997642 111 11 0 1223444566677788
Q ss_pred HhCCCeEEEeccCChhHH
Q 029738 150 ARAGCLVFDMGLATTPAC 167 (189)
Q Consensus 150 ~a~Gi~V~d~G~~pTP~l 167 (189)
.++|++|=+=|-+|.-++
T Consensus 87 ~~nG~~Vs~RGRIp~~v~ 104 (110)
T PF11774_consen 87 RENGYEVSDRGRIPAEVI 104 (110)
T ss_dssp HHTT----SSS---HHHH
T ss_pred HHcCCcCCCCCcCCHHHH
Confidence 999999988888887665
No 155
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=20.61 E-value=4.6e+02 Score=22.19 Aligned_cols=52 Identities=15% Similarity=-0.019 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+.+++.++.+.. + ...+|.+-++.-..+..+.+.+.+.+...|++|...
T Consensus 124 ~~~~~~~~~~~~~~~----~---~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~ 175 (345)
T cd06338 124 SQYAKSLLEMLVALD----P---RPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYD 175 (345)
T ss_pred HHHHHHHHHHHHhcC----C---CCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEE
Confidence 345677778876541 0 125677767777788899999999999999999864
No 156
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.57 E-value=2.4e+02 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=27.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
..|++-||.+......-..++..|.+.|++...+
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSL 220 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEh
Confidence 5799999987655556666799999999998755
No 157
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=20.56 E-value=6.1e+02 Score=22.53 Aligned_cols=49 Identities=8% Similarity=-0.102 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
..+.+++.+++.. + -++|.|-+|.-..+..+++.+.+.|...|++|...
T Consensus 122 ~~~~a~~~~~~~~-----~----w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~~ 170 (404)
T cd06370 122 QVVKSVIALLKHF-----N----WNKFSVVYENDSKYSSVFETLKEEAELRNITISHV 170 (404)
T ss_pred HHHHHHHHHHHHC-----C----CcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEEE
Confidence 4556677666442 2 25787778877788999999999999999998753
No 158
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=20.50 E-value=4.4e+02 Score=20.93 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+..+++++... + ..+|+|-++.-..+....+++.+.+.+.|+++...
T Consensus 121 ~~~~~~~~~~l~~~-----~----~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 170 (299)
T cd04509 121 EQQAEALADYIKEY-----N----WKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGE 170 (299)
T ss_pred HHHHHHHHHHHHHc-----C----CcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEE
Confidence 35666778888764 2 14565555555578888899999999999988653
No 159
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.40 E-value=5.8e+02 Score=22.20 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=51.9
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++..|..|+...||.+.=.++.+...+... + +..|++|-=.-...+
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-------g----~~pvi~gv~~~~t~~- 83 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-------G----RIPFAPGTGALNHDE- 83 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------C----CCcEEEECCcchHHH-
Confidence 3445555555444445689999888777777778999988887776666432 1 234655543322222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
+-.+++-..+.|++.+.+
T Consensus 84 -ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 84 -TLELTKFAEEAGADAAMV 101 (294)
T ss_pred -HHHHHHHHHHcCCCEEEE
Confidence 222344557778876654
No 160
>PRK14047 putative methyltransferase; Provisional
Probab=20.34 E-value=1.6e+02 Score=26.70 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=38.3
Q ss_pred CCeEEEEecCCCChHHHHHH------------HHHHHHhCCCeEEEeccCChhH---------HHHhhhcCCCCCCce
Q 029738 125 DVKVSLGKDPRVSGPSLSVA------------VFAGLARAGCLVFDMGLATTPA---------CFMSTLLPPFAYDAS 181 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~a------------va~gL~a~Gi~V~d~G~~pTP~---------l~fav~~~~~~a~gG 181 (189)
...|++++|.+..+..=+.. +...+...|++-..+....||. ..+++. .++|+..|
T Consensus 148 ~aaIiLaFn~~d~sv~gr~~~le~gg~~~~~gll~~ae~~GI~~~liD~avtplg~g~g~a~r~~~avK-~~~G~PvG 224 (310)
T PRK14047 148 DSSIVLGFNAMDSSLKGRMEMLETGGGLLEKGLLEIADDCGITNILIDPSITPMGNGAGIALRMTIAAK-AKWGLPVG 224 (310)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceeecccccCCCCCccHHHHHHHHHH-HHhCCCcC
Confidence 46799999999887663322 5567888999988777666665 334454 45666544
No 161
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=20.34 E-value=3.9e+02 Score=22.75 Aligned_cols=34 Identities=18% Similarity=-0.089 Sum_probs=28.0
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
++|.|-+|....+..+.+.+.+.|.+.|++|..-
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~ 166 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGE 166 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeee
Confidence 5677777777788888888889999999998764
No 162
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.31 E-value=6.6e+02 Score=23.22 Aligned_cols=86 Identities=21% Similarity=0.333 Sum_probs=51.9
Q ss_pred hHHhhhhhcc-ccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHH
Q 029738 67 EMDRIRRLQN-GSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAV 145 (189)
Q Consensus 67 ~m~~~~~lFg-gsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~av 145 (189)
|++.+.+.+. ...++-++-.| |.+.-++++.+.+|..++.+.+.-. ....+.+--++..-.+ ..
T Consensus 89 Ei~~~~~~~~~~~~v~~i~~gG--GtPs~l~~~~l~~ll~~l~~~~~~~---------~~~e~tie~np~~lt~----e~ 153 (453)
T PRK09249 89 EIALVAALLGPGRPVSQLHWGG--GTPTFLSPEQLRRLMALLREHFNFA---------PDAEISIEIDPRELDL----EM 153 (453)
T ss_pred HHHHHHHHhCCCCceEEEEECC--cccccCCHHHHHHHHHHHHHhCCCC---------CCCEEEEEecCCcCCH----HH
Confidence 3554444443 34577776543 3334578899998888886654211 1235666666655444 44
Q ss_pred HHHHHhCCCeEEEecc-CChhHH
Q 029738 146 FAGLARAGCLVFDMGL-ATTPAC 167 (189)
Q Consensus 146 a~gL~a~Gi~V~d~G~-~pTP~l 167 (189)
++.|.++|++-+.+|+ ...+.+
T Consensus 154 l~~l~~aG~~risiGvqS~~~~~ 176 (453)
T PRK09249 154 LDALRELGFNRLSLGVQDFDPEV 176 (453)
T ss_pred HHHHHHcCCCEEEECCCCCCHHH
Confidence 6677888999998884 444444
No 163
>PRK10116 universal stress protein UspC; Provisional
Probab=20.19 E-value=2.5e+02 Score=20.63 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=27.9
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChh
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP 165 (189)
.+|+|+.|....+....+..+.-....|.++..+-..+.|
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~ 43 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDP 43 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCc
Confidence 4799999999888776565555555668887766554444
No 164
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=20.13 E-value=2.4e+02 Score=20.18 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCeEEEe-ccCChhHHHHhhhcCCCCCCceEEEeCCC
Q 029738 140 SLSVAVFAGLARAGCLVFDM-GLATTPACFMSTLLPPFAYDASIMILLCY 188 (189)
Q Consensus 140 ~la~ava~gL~a~Gi~V~d~-G~~pTP~l~fav~~~~~~a~gGImITASH 188 (189)
...+.+.+-+...|+++... +--|.-.+.-.+ +..+++ ..|.++|
T Consensus 49 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~--~~~~~d--llviG~~ 94 (124)
T cd01987 49 RRLAEALRLAEELGAEVVTLPGDDVAEAIVEFA--REHNVT--QIVVGKS 94 (124)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH--HHcCCC--EEEeCCC
Confidence 33334456667788877543 434445454444 244443 4555554
No 165
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=20.12 E-value=4e+02 Score=21.68 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEE----EecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSL----GKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvV----GrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
.=||..+...++.+++...+. |. ....|.| |.-.+-.|+ =.++++.+|...|+++..+ ...|.|
T Consensus 68 KsTpyAAq~aa~~~a~k~~~~-----Gi--~~v~V~vr~~gg~~~kg~Gp-Gr~~airaL~~~glkI~~I~DvTPiP 136 (149)
T PTZ00129 68 ESSPYAAMMAAQDVAARCKEL-----GI--NALHIKLRATGGVRTKTPGP-GAQAALRALARAGLKIGRIEDVTPIP 136 (149)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEEecCCCCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCCC
Confidence 678889999999999988764 31 2234555 111222222 2456689999999999988 577777
No 166
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.08 E-value=1.6e+02 Score=23.05 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=31.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHH
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPAC 167 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l 167 (189)
.+++| |.-..++.-++.+.+.+.+.|+..+|..+.-.|.-
T Consensus 87 g~iii--d~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~ 126 (163)
T PF03446_consen 87 GKIII--DMSTISPETSRELAERLAAKGVRYVDAPVSGGPPG 126 (163)
T ss_dssp TEEEE--E-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHH
T ss_pred ceEEE--ecCCcchhhhhhhhhhhhhccceeeeeeeeccccc
Confidence 46776 88899999999999999999999999887766654
Done!