Query 029738
Match_columns 189
No_of_seqs 181 out of 1389
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 03:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3w_A Phosphoglucosamine muta 99.9 3.7E-28 1.2E-32 221.1 11.1 101 72-189 2-103 (443)
2 3pdk_A Phosphoglucosamine muta 99.9 5.8E-28 2E-32 221.4 10.7 102 71-189 22-123 (469)
3 2f7l_A 455AA long hypothetical 99.9 1.2E-27 4.1E-32 217.6 9.7 98 72-189 2-99 (455)
4 3uw2_A Phosphoglucomutase/phos 99.9 3.4E-27 1.1E-31 217.4 12.6 102 72-189 25-132 (485)
5 1p5d_X PMM, phosphomannomutase 99.9 3E-27 1E-31 215.4 12.0 100 72-189 11-110 (463)
6 1wqa_A Phospho-sugar mutase; a 99.9 4.9E-27 1.7E-31 213.6 12.3 101 73-189 3-103 (455)
7 1tuo_A Putative phosphomannomu 99.9 3.4E-26 1.2E-30 208.9 11.4 99 73-189 12-111 (464)
8 4hjh_A Phosphomannomutase; str 99.9 4E-26 1.4E-30 209.2 9.4 102 72-189 9-110 (481)
9 2z0f_A Putative phosphoglucomu 99.9 7.1E-26 2.4E-30 209.1 8.6 116 58-189 9-132 (524)
10 3na5_A Phosphoglucomutase; iso 99.9 1.8E-25 6.2E-30 209.4 10.3 116 58-189 49-172 (570)
11 1kfi_A Phosphoglucomutase 1; p 99.9 1.9E-24 6.6E-29 201.9 8.4 118 43-189 2-128 (572)
12 3pmg_A Alpha-D-glucose-1,6-bis 99.9 5.6E-24 1.9E-28 198.9 4.7 101 74-189 15-118 (561)
13 2dka_A Phosphoacetylglucosamin 98.9 3.8E-09 1.3E-13 98.1 9.4 104 58-172 9-180 (544)
14 2dka_A Phosphoacetylglucosamin 94.2 0.0099 3.4E-07 55.0 0.5 15 175-189 53-68 (544)
15 1o1x_A Ribose-5-phosphate isom 93.0 0.43 1.5E-05 37.9 8.0 60 126-187 13-79 (155)
16 2vvr_A Ribose-5-phosphate isom 92.1 0.43 1.5E-05 37.6 6.9 59 127-187 3-68 (149)
17 2vvp_A Ribose-5-phosphate isom 90.6 0.49 1.7E-05 37.7 5.9 60 126-187 4-71 (162)
18 3he8_A Ribose-5-phosphate isom 89.9 1 3.5E-05 35.4 7.1 59 127-187 2-67 (149)
19 3s5p_A Ribose 5-phosphate isom 89.6 1.1 3.8E-05 35.9 7.2 61 125-187 21-88 (166)
20 3ph3_A Ribose-5-phosphate isom 89.1 1.2 4.1E-05 35.7 7.1 61 125-187 20-87 (169)
21 4em8_A Ribose 5-phosphate isom 88.1 1.8 6.1E-05 34.0 7.4 60 126-187 8-73 (148)
22 2ppw_A Conserved domain protei 83.7 2.1 7.2E-05 35.5 6.0 59 126-187 4-77 (216)
23 3k7p_A Ribose 5-phosphate isom 81.7 2.6 8.9E-05 34.1 5.7 60 126-187 23-91 (179)
24 2ehp_A AQ_1627 protein; putati 77.7 8 0.00027 29.0 6.8 55 94-159 19-73 (126)
25 3sgw_A Ribose 5-phosphate isom 77.0 3.9 0.00013 33.2 5.4 60 126-187 30-99 (184)
26 4dik_A Flavoprotein; TM0755, e 76.7 13 0.00045 32.8 9.3 53 98-158 246-299 (410)
27 3ono_A Ribose/galactose isomer 74.7 4 0.00014 33.8 4.9 59 126-187 4-76 (214)
28 3fni_A Putative diflavin flavo 70.0 14 0.00049 27.8 6.9 39 125-163 4-43 (159)
29 5nul_A Flavodoxin; electron tr 54.3 23 0.0008 25.2 5.3 32 128-159 1-33 (138)
30 1y80_A Predicted cobalamin bin 52.6 31 0.0011 27.0 6.2 60 125-187 88-148 (210)
31 1e5d_A Rubredoxin\:oxygen oxid 52.2 80 0.0027 26.4 9.1 55 98-161 234-289 (402)
32 3hly_A Flavodoxin-like domain; 52.1 34 0.0012 25.5 6.1 34 127-160 2-36 (161)
33 3f6r_A Flavodoxin; FMN binding 52.1 24 0.00082 25.5 5.1 35 127-161 3-38 (148)
34 3ezx_A MMCP 1, monomethylamine 51.4 75 0.0026 25.3 8.3 54 125-184 92-149 (215)
35 3c5y_A Ribose/galactose isomer 48.9 13 0.00043 31.2 3.3 60 128-187 24-93 (231)
36 1ccw_A Protein (glutamate muta 47.5 22 0.00075 26.3 4.2 43 126-171 4-50 (137)
37 2i2x_B MTAC, methyltransferase 45.7 1.2E+02 0.0041 24.6 10.0 88 94-187 92-183 (258)
38 2yxb_A Coenzyme B12-dependent 45.1 29 0.001 26.5 4.7 56 125-186 18-77 (161)
39 2hna_A Protein MIOC, flavodoxi 44.2 51 0.0018 23.8 5.8 54 127-188 3-57 (147)
40 1ycg_A Nitric oxide reductase; 41.9 89 0.0031 26.0 7.7 52 100-160 235-287 (398)
41 1o5k_A DHDPS, dihydrodipicolin 39.6 1.1E+02 0.0038 25.6 7.9 100 46-159 14-113 (306)
42 1bvy_F Protein (cytochrome P45 37.4 53 0.0018 25.6 5.3 55 126-189 22-79 (191)
43 3hr4_A Nitric oxide synthase, 36.3 1.5E+02 0.0053 23.8 8.0 54 126-188 41-97 (219)
44 3tnj_A Universal stress protei 36.0 51 0.0017 23.2 4.6 40 126-165 7-46 (150)
45 2ehh_A DHDPS, dihydrodipicolin 34.6 1.7E+02 0.0057 24.2 8.2 91 55-159 11-101 (294)
46 2vqe_K 30S ribosomal protein S 34.5 1.4E+02 0.0049 22.3 7.6 60 94-165 55-115 (129)
47 2ohh_A Type A flavoprotein FPR 34.4 1.2E+02 0.004 25.4 7.3 36 126-161 257-293 (404)
48 3l21_A DHDPS, dihydrodipicolin 33.9 2E+02 0.0069 23.9 8.7 84 63-159 33-116 (304)
49 1q77_A Hypothetical protein AQ 33.0 51 0.0018 22.9 4.1 39 126-164 5-44 (138)
50 3hgm_A Universal stress protei 31.3 36 0.0012 23.8 3.0 41 126-166 3-43 (147)
51 1jmv_A USPA, universal stress 31.2 67 0.0023 22.3 4.5 37 126-162 3-39 (141)
52 3bul_A Methionine synthase; tr 29.9 85 0.0029 29.3 6.0 57 125-187 98-158 (579)
53 1byr_A Protein (endonuclease); 29.8 1.2E+02 0.004 21.7 5.8 54 127-189 55-111 (155)
54 3u5c_O RP59A, 40S ribosomal pr 29.8 78 0.0027 24.2 4.8 64 94-165 54-122 (137)
55 2yxg_A DHDPS, dihydrodipicolin 29.6 1.6E+02 0.0056 24.2 7.3 91 55-159 11-101 (289)
56 2h54_A Caspase-1; allosteric s 29.5 1.7E+02 0.0058 22.7 7.0 62 127-188 46-118 (178)
57 3r8n_K 30S ribosomal protein S 29.4 1.5E+02 0.005 21.8 6.2 60 94-165 45-105 (117)
58 3na8_A Putative dihydrodipicol 28.5 2.3E+02 0.0079 23.8 8.1 87 60-159 39-125 (315)
59 3ckm_A YRAM (HI1655), LPOA; pe 27.3 48 0.0016 27.0 3.5 54 94-159 105-158 (327)
60 3e96_A Dihydrodipicolinate syn 27.3 2.6E+02 0.0088 23.4 8.2 84 62-159 29-112 (316)
61 3s3t_A Nucleotide-binding prot 26.6 38 0.0013 23.7 2.5 38 126-163 6-43 (146)
62 3si9_A DHDPS, dihydrodipicolin 26.5 2.9E+02 0.0098 23.2 8.5 86 61-159 38-123 (315)
63 2q9u_A A-type flavoprotein; fl 26.4 2.6E+02 0.0087 23.5 8.1 82 95-188 234-318 (414)
64 2fz5_A Flavodoxin; alpha/beta 26.2 1.6E+02 0.0055 20.2 6.8 32 128-159 2-34 (137)
65 3fdx_A Putative filament prote 25.9 56 0.0019 22.7 3.3 40 126-165 2-43 (143)
66 4eyg_A Twin-arginine transloca 25.9 1.5E+02 0.0053 23.7 6.4 49 101-158 124-172 (368)
67 3i09_A Periplasmic branched-ch 25.6 1.5E+02 0.0053 24.0 6.4 48 102-158 126-173 (375)
68 3daq_A DHDPS, dihydrodipicolin 25.5 2.8E+02 0.0097 22.8 8.7 84 63-159 20-103 (292)
69 4f06_A Extracellular ligand-bi 25.2 1.5E+02 0.0052 24.3 6.3 48 103-159 126-173 (371)
70 3snr_A Extracellular ligand-bi 24.9 1.7E+02 0.0057 23.2 6.4 49 101-158 120-168 (362)
71 3m5v_A DHDPS, dihydrodipicolin 24.9 2.9E+02 0.01 22.8 8.7 86 62-159 24-109 (301)
72 2xij_A Methylmalonyl-COA mutas 24.8 2.3E+02 0.0079 27.4 8.2 55 125-185 604-662 (762)
73 3tak_A DHDPS, dihydrodipicolin 24.6 2.9E+02 0.01 22.7 8.1 86 61-159 17-102 (291)
74 4evq_A Putative ABC transporte 23.9 1.8E+02 0.006 23.4 6.4 48 102-158 137-184 (375)
75 3j20_M 30S ribosomal protein S 23.6 1.3E+02 0.0044 22.9 5.1 64 93-165 53-122 (137)
76 1qys_A TOP7; alpha-beta, novel 23.5 1.3E+02 0.0046 21.2 4.7 53 98-159 27-81 (106)
77 1tq8_A Hypothetical protein RV 23.3 75 0.0026 23.2 3.7 41 125-166 17-59 (163)
78 3s5o_A 4-hydroxy-2-oxoglutarat 22.7 3.2E+02 0.011 22.6 8.0 85 62-159 31-115 (307)
79 3n0w_A ABC branched chain amin 22.5 1.5E+02 0.0052 24.1 5.8 48 102-158 128-175 (379)
80 3flu_A DHDPS, dihydrodipicolin 22.2 3.3E+02 0.011 22.4 9.0 86 61-159 23-108 (297)
81 3a5f_A Dihydrodipicolinate syn 22.0 3.2E+02 0.011 22.4 7.7 86 60-159 17-102 (291)
82 3dz1_A Dihydrodipicolinate syn 21.5 3.5E+02 0.012 22.5 9.4 85 61-159 24-108 (313)
83 2xgg_A Microneme protein 2; A/ 21.5 1.5E+02 0.0051 21.8 5.1 40 125-164 123-162 (178)
84 2wkj_A N-acetylneuraminate lya 21.3 3.5E+02 0.012 22.4 8.7 86 61-159 27-112 (303)
85 3fg9_A Protein of universal st 20.9 62 0.0021 23.0 2.7 40 126-165 16-57 (156)
86 3ipc_A ABC transporter, substr 20.7 1.5E+02 0.0052 23.6 5.3 48 102-157 123-170 (356)
87 4hqo_A Sporozoite surface prot 20.7 3.2E+02 0.011 21.6 7.7 38 126-163 127-164 (266)
88 2ark_A Flavodoxin; FMN, struct 20.7 2.3E+02 0.008 21.1 6.1 35 127-161 6-42 (188)
89 1ykg_A SIR-FP, sulfite reducta 20.4 90 0.0031 23.1 3.6 32 126-157 10-42 (167)
90 3kp1_A D-ornithine aminomutase 20.3 41 0.0014 32.5 1.9 60 125-186 602-665 (763)
91 4hqf_A Thrombospondin-related 20.3 2.8E+02 0.0095 22.1 6.8 39 125-163 129-167 (281)
92 2v9d_A YAGE; dihydrodipicolini 20.3 4E+02 0.014 22.6 8.2 86 61-159 47-132 (343)
No 1
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=99.95 E-value=3.7e-28 Score=221.07 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=93.0
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCC-eEEEEecCCCChHHHHHHHHHHHH
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDV-KVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~-~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
+++||++||||++++| +||++++.++|+|+|+|+.+. + .. +|+||||+|.+|++|+++++++|+
T Consensus 2 ~~~FGt~GiRG~~~~g------~lt~~~v~~~g~a~~~~l~~~-----~----~~~~VvVG~D~R~ss~~l~~a~~~gl~ 66 (443)
T 3i3w_A 2 AKYFGTDGIRGEVANS------TITVEFTQKLGNAVGSLINQK-----N----YPKFVIVGQDTRSSGGFLKFALVSGLN 66 (443)
T ss_dssp -CCCCSSSSEEEBSSS------SBSHHHHHHHHHHHHHHHHHT-----T----CCSEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred CcccCCCCeeEEeCCC------CCCHHHHHHHHHHHHHHHHhc-----C----CCCeEEEEeCCCcCHHHHHHHHHHHHH
Confidence 5799999999999843 799999999999999999764 1 24 899999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 151 a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 67 s~G~~V~~~g~~pTP~~~~av~--~~~a~~GImITASHN 103 (443)
T 3i3w_A 67 AAGIDVLDLGVVPTPVVAFMTV--KHRAAAGFVITASHN 103 (443)
T ss_dssp HHTCEEEEEEECCHHHHHHHHH--HTTCSEEEEECCTTS
T ss_pred HCCCeEEEeCCCCHHHHHHHHH--hcCCCeEEEEEECCC
Confidence 9999999999999999999995 789999999999998
No 2
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=99.95 E-value=5.8e-28 Score=221.41 Aligned_cols=102 Identities=30% Similarity=0.406 Sum_probs=93.7
Q ss_pred hhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHH
Q 029738 71 IRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 71 ~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
++++||++||||++++ +||++++.++|+|+|+|+.+.. ...+|+||||+|.+|++|++++++||+
T Consensus 22 m~~~FGt~GiRG~~~~-------~lt~~~v~~~g~a~~~~l~~~~--------~~~~VvIG~D~R~ss~~~~~a~a~gl~ 86 (469)
T 3pdk_A 22 MGKYFGTDGVRGVANK-------ELTPELAFKIGRFGGYVLTKDT--------DRPKVIIGRDTRISGHMLEGALVAGLL 86 (469)
T ss_dssp -CCSCBTTBEEEEBTT-------TBCHHHHHHHHHHHHHHHHTTC--------SSCEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred cccccCCCCeeeecCC-------CCCHHHHHHHHHHHHHHHHhhC--------CCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3579999999999984 8999999999999999997531 236899999999999999999999999
Q ss_pred hCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 151 RAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 151 a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 87 s~Gi~V~~~g~~pTP~l~fav~--~~~a~~GImITASHN 123 (469)
T 3pdk_A 87 STGAEVMRLGVISTPGVAYLTK--ALDAQAGVMISASHN 123 (469)
T ss_dssp TTTCEEEEEEECCHHHHHHHHH--HHTCSEEEEECCTTS
T ss_pred HCCCEEEEeCCCChHHHHHHHH--hcCCCeEEEEEeCCC
Confidence 9999999999999999999995 789999999999998
No 3
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.2e-27 Score=217.56 Aligned_cols=98 Identities=30% Similarity=0.472 Sum_probs=91.9
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+++||++||||+++ .+||++++.++++|||+|+.++ .+|+||||+|.+|++|+++++++|++
T Consensus 2 ~~~Fgt~GiRG~~~-------~~lt~~~v~~~~~a~~~~l~~~-----------~~VvIG~D~R~ss~~~~~a~a~gl~~ 63 (455)
T 2f7l_A 2 GKLFGTDGVRGIVN-------KELTPELVLKLSKAIGTFFGKN-----------SKILVGRDVRAGGDMLVKIVEGGLLS 63 (455)
T ss_dssp CSSCCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHCTT-----------CEEEEEECSCTTHHHHHHHHHHHHHH
T ss_pred CCcccCCCeeeecC-------CCcCHHHHHHHHHHHHHHHccC-----------CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999998 3899999999999999999642 47999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 64 ~G~~V~~~g~~pTP~~~~av~--~~~~~~GImITASHN 99 (455)
T 2f7l_A 64 VGVEVYDGGMAPTPALQYAVK--TLGYDGGVVITASHN 99 (455)
T ss_dssp TTCEEEEEEECCHHHHHHHHH--HHCCSEEEEECCTTS
T ss_pred CCCcEEEcCCCCcHHHHHHHH--hcCCCeEEEEEcCCC
Confidence 999999999999999999995 789999999999999
No 4
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=99.94 E-value=3.4e-27 Score=217.42 Aligned_cols=102 Identities=28% Similarity=0.412 Sum_probs=93.1
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+++|+++||||+++ ++||++++.++++|||+|+.+.. ..+|+||||+|.+|++|+++++++|++
T Consensus 25 ~~~Fgt~GiRG~~~-------~~lt~~~~~~ig~A~~~~l~~~~---------~~~VvVG~D~R~ss~~~~~a~a~gl~a 88 (485)
T 3uw2_A 25 QSIFKAYDIRGVIG-------KTLDADVARSIGRAFGSEVRAQG---------GDAVVVARDGRLSGPELVGALADGLRA 88 (485)
T ss_dssp GGGBCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHHHTT---------CCEEEEEECSCTTHHHHHHHHHHHHHH
T ss_pred ccccccCCEEEEeC-------CCCCHHHHHHHHHHHHHHHHHcC---------CCEEEEEECCCcCHHHHHHHHHHHHHH
Confidence 58999999999998 48999999999999999997641 268999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcC------CCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLP------PFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~------~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++... ++++++|||||||||
T Consensus 89 ~Gi~V~~~g~~pTP~l~~av~~~~~~~~~~~~~~~GImITASHN 132 (485)
T 3uw2_A 89 AGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHN 132 (485)
T ss_dssp TTCEEEEEEECCHHHHHHHTTSCEEETTEEECCCCEEEECCTTS
T ss_pred CCCEEEEeCCCChHHHHHHHhccccccccccCCCeEEEEEeCCC
Confidence 99999999999999999999300 568999999999998
No 5
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=99.94 E-value=3e-27 Score=215.38 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=93.3
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+++||++||||++++ +||++++.++++|+|+|+.+.. ..+|+||||+|.+|++|+++++++|.+
T Consensus 11 ~~~Fgt~GiRG~~~~-------~~t~~~~~~i~~a~~~~l~~~~---------~~~VvVG~D~R~ss~~l~~a~~~gl~a 74 (463)
T 1p5d_X 11 ASIFRAYDIRGVVGD-------TLTAETAYWIGRAIGSESLARG---------EPCVAVGRDGRLSGPELVKQLIQGLVD 74 (463)
T ss_dssp GGGBCSSSEEEEBTT-------TBCHHHHHHHHHHHHHHHHHTT---------CCEEEEEECSCTTHHHHHHHHHHHHHT
T ss_pred ccccCCCCcceeCCC-------CCCHHHHHHHHHHHHHHHHHcC---------CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999983 8999999999999999997641 258999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 75 ~G~~V~~~g~~pTP~l~~av~--~~~~~~GImITASHN 110 (463)
T 1p5d_X 75 CGCQVSDVGMVPTPVLYYAAN--VLEGKSGVMLTGSHN 110 (463)
T ss_dssp BTCEEEEEEECCHHHHHHHHH--HSSCSEEEEECCTTS
T ss_pred CCCEEEEeCCCChHHHHHHHH--hcCCCeEEEEccCCC
Confidence 999999999999999999995 789999999999999
No 6
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.9e-27 Score=213.57 Aligned_cols=101 Identities=36% Similarity=0.498 Sum_probs=92.8
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
++||++||||++++ +||++++.++++|+|+|+.++. ....+|+||||+|.+|++|+++++++|+++
T Consensus 3 ~~Fgt~GiRG~~~~-------~lt~~~v~~~~~a~~~~l~~~~-------~~~~~VvIG~D~R~ss~~l~~a~~~gl~~~ 68 (455)
T 1wqa_A 3 KLFGTFGVRGIANE-------KITPEFAMKIGMAFGTLLKREG-------RKKPLVVVGRDTRVSGEMLKEALISGLLSV 68 (455)
T ss_dssp TTCBTTBEEEEBTT-------TBCHHHHHHHHHHHHHHHHHTT-------CSSCEEEEEECSCTTHHHHHHHHHHHHHHT
T ss_pred cccCCCceeeecCC-------CcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEEeCCCcCHHHHHHHHHHHHHHc
Confidence 68999999999984 7999999999999999997641 123579999999999999999999999999
Q ss_pred CCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+++|++|||+++|++. ++++++|||||||||
T Consensus 69 G~~V~~~g~~pTP~l~~~v~--~~~~~~GimITASHN 103 (455)
T 1wqa_A 69 GCDVIDVGIAPTPAVQWATK--HFNADGGAVITASHN 103 (455)
T ss_dssp TCEEEEEEECCHHHHHHHHH--HTTCSEEEEECCTTS
T ss_pred CCeEEEeCCCChHHHHHHHH--hcCCCEEEEEEeCCC
Confidence 99999999999999999995 789999999999999
No 7
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=99.93 E-value=3.4e-26 Score=208.85 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=91.2
Q ss_pred hhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhC
Q 029738 73 RLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARA 152 (189)
Q Consensus 73 ~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~ 152 (189)
-+||++||||+++ .+||++++.++++|+++|+.+.. ..+|+||||+|.+|++|+++++++|+++
T Consensus 12 l~FGt~GiRG~~~-------~~lt~~~v~~~~~a~~~~l~~~~---------~~~VvVG~D~R~ss~~~~~a~a~gl~~~ 75 (464)
T 1tuo_A 12 IRFGTEGFRGVIA-------REFTFATLHRLAEAYGRHLLERG---------GGLVVVGHDTRFLADAFARALSGHLAGM 75 (464)
T ss_dssp CCCCSSSEEEEBT-------TTBCHHHHHHHHHHHHHHHHHTT---------CCEEEEEECSSTTHHHHHHHHHHHHHHH
T ss_pred ccccCCCcceecC-------CCcCHHHHHHHHHHHHHHHHHhC---------CCeEEEeeCCCCCHHHHHHHHHHHHHHC
Confidence 4599999999998 38999999999999999998641 2589999999999999999999999999
Q ss_pred CCeEE-EeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 153 GCLVF-DMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 153 Gi~V~-d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
|++|+ +.|++|||+++|++. ++++++|||||||||
T Consensus 76 G~~V~~~~g~~pTP~~~~av~--~~~~~~GImITASHN 111 (464)
T 1tuo_A 76 GLKVVLLKGPVPTPLLSFAVR--HLKAAGGAMLTASHN 111 (464)
T ss_dssp TCEEEEESSSCCHHHHHHHHH--HTTCSEEEEECCTTS
T ss_pred CCeEEEcCCCCCHHHHHHHHH--HhCCCceEEEcCCCC
Confidence 99996 689999999999995 789999999999999
No 8
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=99.93 E-value=4e-26 Score=209.22 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=90.7
Q ss_pred hhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHh
Q 029738 72 RRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLAR 151 (189)
Q Consensus 72 ~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a 151 (189)
+..||++||||++. +||+++|.++++|||+|+.+.. ......+|+||||+|.+|++|+++++++|++
T Consensus 9 ~~~FGT~GiRG~~~--------~lt~~~v~~~~~a~a~~l~~~~-----~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a 75 (481)
T 4hjh_A 9 SLKFGTSGLRGLAV--------ELNGLPAYAYTMAFVQMLAAKG-----QLQKGDKVFVGRDLRPSSPDIAALAMGAIED 75 (481)
T ss_dssp CCEECSSSEEEEHH--------HHTTHHHHHHHHHHHHHHHHTT-----SCCTTCEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred cCcccCCCcceecC--------CCCHHHHHHHHHHHHHHHHhhc-----cccCCCeEEEeecCCcCHHHHHHHHHHHHHH
Confidence 45699999999993 7999999999999999997642 0012368999999999999999999999999
Q ss_pred CCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 152 AGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 152 ~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
+|++|+++|++|||+++|++. ++++ +|||||||||
T Consensus 76 ~Gi~V~~~g~~pTP~l~fav~--~~~~-~GImITASHN 110 (481)
T 4hjh_A 76 AGFTPVNCGVLPTPALSYYAM--GAKA-PSIMVTGSHI 110 (481)
T ss_dssp TTCEEEEEEECCHHHHHHHHH--HTTC-CEEEECCTTS
T ss_pred CCCEEEEeCCcCcHHHHHHHH--hcCC-ceEEEecCCC
Confidence 999999999999999999995 6777 7999999998
No 9
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=99.92 E-value=7.1e-26 Score=209.14 Aligned_cols=116 Identities=20% Similarity=0.147 Sum_probs=95.8
Q ss_pred cccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCC
Q 029738 58 KYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS 137 (189)
Q Consensus 58 ~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~s 137 (189)
+|+++.++-+-..-+.+||++||||++.. .+||++++.++++|+|+|+.+. + ...+|+||||+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~FGT~GiRG~~~~------~~lt~~~v~~i~~a~~~~l~~~-----~---~~~~VvIG~D~R~~ 74 (524)
T 2z0f_A 9 LYYEATPDPQNPLEGVRFGTSGHRGSSLK------ATFTEAHVLAIAQAIAELRPSF-----G---ATGPLFLAKDTHAL 74 (524)
T ss_dssp HHHHCCCCTTCGGGSCCEETTEEEECGGG------TSSCHHHHHHHHHHHHHHTTTT-----T---CCSCEEEEECSCTT
T ss_pred HHhhcCCCcCCccCcCcccCccccCCccc------CCCCHHHHHHHHHHHHHHHHHh-----C---CCCeEEEEeCCCcc
Confidence 46666655444445678999999997532 4899999999999999998654 1 12469999999999
Q ss_pred hHHHHHHHHHHHHhCCCeEEEe---ccCChhHHHHhhhcCCCC-----CCceEEEeCCCC
Q 029738 138 GPSLSVAVFAGLARAGCLVFDM---GLATTPACFMSTLLPPFA-----YDASIMILLCYR 189 (189)
Q Consensus 138 S~~la~ava~gL~a~Gi~V~d~---G~~pTP~l~fav~~~~~~-----a~gGImITASHN 189 (189)
|++++++++++|+++|++|+++ |++|||+++|++. +++ +++|||||||||
T Consensus 75 S~~~~~~~~~gl~a~Gi~V~~~~~~G~~pTP~l~~av~--~~~~~~~~a~~GImITASHN 132 (524)
T 2z0f_A 75 SEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAIL--EHNAHHEAKADGVLLTPSHN 132 (524)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESSSSCCCHHHHHHHHH--HHHTTCSSCCEEEEECC--C
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCccCcHHHHHHHH--HhCCCccccceEEEEcCCCC
Confidence 9999999999999999999984 8999999999995 677 699999999999
No 10
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=99.92 E-value=1.8e-25 Score=209.38 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=100.6
Q ss_pred cccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCC
Q 029738 58 KYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS 137 (189)
Q Consensus 58 ~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~s 137 (189)
.||...+|-+-...+..||++||||+++. .+||++++.++++|||+|+.+.. ...+|+||||+|.+
T Consensus 49 ~~~~~~~~~~~~~~r~~FGT~GiRG~~~~------~~ln~~~v~~i~~A~a~~l~~~~--------~~~~VvVG~D~R~~ 114 (570)
T 3na5_A 49 QYYVLKPEAGNAEHAVKFGTSGHRGSAGR------HSFNEPHILAIAQAIAEERAKNG--------ITGPCYVGKDTHAL 114 (570)
T ss_dssp HHHHCCCCTTCGGGSCCCBTTBEEECGGG------TSSSHHHHHHHHHHHHHHHHHTT--------CCSCEEEEECSSTT
T ss_pred HHhccCCCcCCccccceecCCCceeecCC------CCCCHHHHHHHHHHHHHHHHHhC--------CCCeEEEEeCCCcc
Confidence 46776676655556778999999999873 48999999999999999997642 12579999999999
Q ss_pred hHHHHHHHHHHHHhCCCeEE---EeccCChhHHHHhhhcCCCC-----CCceEEEeCCCC
Q 029738 138 GPSLSVAVFAGLARAGCLVF---DMGLATTPACFMSTLLPPFA-----YDASIMILLCYR 189 (189)
Q Consensus 138 S~~la~ava~gL~a~Gi~V~---d~G~~pTP~l~fav~~~~~~-----a~gGImITASHN 189 (189)
|+.++++++++|+++|++|+ |+|++|||+++|++. +++ +++|||||||||
T Consensus 115 S~~~~~~a~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~--~~~~~~~~~~~GImITASHN 172 (570)
T 3na5_A 115 SEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAIL--VHNKKGGPLADGIVITPSHN 172 (570)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHHHHH--HHHHTCSSCCEEEEECCTTC
T ss_pred cHHHHHHHHHHHHHCCCEEEEeCCCCccChHHHHHHHH--HhCCCccccceEEEEEeCCC
Confidence 99999999999999999999 579999999999995 566 899999999999
No 11
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=99.90 E-value=1.9e-24 Score=201.86 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=98.7
Q ss_pred cccceeeeeeecccccccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCC
Q 029738 43 SHSIKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRP 122 (189)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~ 122 (189)
|.++..+++....+. + ...||++||||++++ .+|++.+.+++++++.++.+..
T Consensus 2 ~~~~~~~~~~~~~~~-----------~--~~~FGT~GiRG~~~~-------~~t~~~~~~~~~a~~~~l~~~~------- 54 (572)
T 1kfi_A 2 QQVIPAPRVQVTQPY-----------A--GQKPGTSGLRKKVSE-------ATQPNYLENFVQSIFNTLRKDE------- 54 (572)
T ss_dssp -CCBCCCEEEECCCC-----------T--TCCCBTTBEEEEHHH-------HTSTTHHHHHHHHHHHHSCGGG-------
T ss_pred CccccCcccccCCcC-----------c--cCCccCCccceEecc-------eecHHHHHHHHHHHHHHHhhhc-------
Confidence 445555666555442 1 356999999999984 6999999999999999986421
Q ss_pred CCCC-eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe---ccCChhHHHHhhhcCCC-----CCCceEEEeCCCC
Q 029738 123 VEDV-KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM---GLATTPACFMSTLLPPF-----AYDASIMILLCYR 189 (189)
Q Consensus 123 ~~~~-~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~---G~~pTP~l~fav~~~~~-----~a~gGImITASHN 189 (189)
.... +|+||||+|.+|++|+++++++|+++|++|+++ |++|||+++|++. ++ ++++|||||||||
T Consensus 55 ~~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi~V~~~~~~G~~pTP~l~fav~--~~n~~~~~a~~GImITASHN 128 (572)
T 1kfi_A 55 LKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIR--KVNEEVGNCIGGIILTASHN 128 (572)
T ss_dssp SSSSCEEEEEECCCTTHHHHHHHHHHHHHHTTCSEEEEEGGGCBCHHHHHHHHH--HHHHHSCCEEEEEEECCTTS
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEEecCCCCCChHHHHHHHH--HhccccCCcceEEEEeCCCC
Confidence 0124 799999999999999999999999999999999 9999999999995 67 8999999999999
No 12
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=99.88 E-value=5.6e-24 Score=198.89 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=88.4
Q ss_pred hccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCC
Q 029738 74 LQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAG 153 (189)
Q Consensus 74 lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~G 153 (189)
.||++||||.++....+ .+|||+++.+|++|++.++.. ..+|+||||+|.+|++++++++++|+++|
T Consensus 15 ~fGTsGiRG~v~~~~~~--~~~t~~f~~~l~~A~g~~~~~-----------g~~VvVG~D~R~~s~~~~~~~a~~l~a~G 81 (561)
T 3pmg_A 15 KPGTSGLRKRVKVFQSS--TNYAENFIQSIISTVEPAQRQ-----------EATLVVGGDGRFYMKEAIQLIVRIAAANG 81 (561)
T ss_dssp CCBTTBEEEEHHHHHHS--TTHHHHHHHHHHHTSCGGGTT-----------TCEEEEEECCCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCeeeCCCCCC--cCccHHHHHHHHHHHHhhhcC-----------CCEEEEEeCCCccHHHHHHHHHHHHHHCC
Confidence 38999999998631001 389999999999999876532 25899999999999999999999999999
Q ss_pred CeEEEe---ccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 154 CLVFDM---GLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 154 i~V~d~---G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
++|+++ |++|||+++|++. ++++++|||||||||
T Consensus 82 v~V~~~~~~g~~pTP~vs~av~--~~~a~gGImITASHN 118 (561)
T 3pmg_A 82 IGRLVIGQNGILSTPAVSCIIR--KIKAIGGIILTASHN 118 (561)
T ss_dssp CCEEEEEEEEECCHHHHHHHHH--HHTCSEEEEECCTTS
T ss_pred CEEEEecCCCccCHHHHHHHHH--HhcCCeEEEEEeCCC
Confidence 999998 9999999999995 788999999999999
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=98.90 E-value=3.8e-09 Score=98.13 Aligned_cols=104 Identities=20% Similarity=0.150 Sum_probs=80.7
Q ss_pred cccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhc-cccC-----------------
Q 029738 58 KYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSL-ENER----------------- 119 (189)
Q Consensus 58 ~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~-~~~~----------------- 119 (189)
+|++..++-+ ..+.+||++|+||.+ +|||+++.++|+|+|.-.+... ....
T Consensus 9 ~~~~~~~~~~--~~~~~fGt~G~RG~~---------~~~~~~~~~~g~a~~~r~~~~~~~~~GImITASHNP~~dNGiK~ 77 (544)
T 2dka_A 9 QYLPSHPKPQ--GVTFTYGTAGFRMKA---------DKLDYVTFTVGIIASLRSKYLQGKTVGVMITASHNPPEDNGVKV 77 (544)
T ss_dssp TTGGGCCCCS--SCCCCCBTTBEEEEG---------GGCHHHHHHHHHHHHHHHHHTTTCEEEEEECCC-CCTTEEEEEE
T ss_pred HHHHhCCCCc--CCeeEeCCCCccccc---------ccCHHHHHHHHHHHHHHHHhcCCcCceEEEeCCCCCcccCceee
Confidence 3555665553 467899999999975 6999999999999997544322 1000
Q ss_pred ----CC------C---------------------C------------------CCCeEEEEecCCCChHHHHHHHHHHHH
Q 029738 120 ----GR------P---------------------V------------------EDVKVSLGKDPRVSGPSLSVAVFAGLA 150 (189)
Q Consensus 120 ----g~------~---------------------~------------------~~~~VvVGrD~R~sS~~la~ava~gL~ 150 (189)
|. + . ...+|+||||.|.+++.+.+++.++|.
T Consensus 78 ~~~~G~~l~~~~e~~~~~~an~~~~~~~~~~~~~~~I~~~i~~~~~~~~~~~~~~~~v~vg~d~r~s~~~l~~al~~gl~ 157 (544)
T 2dka_A 78 VDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNSLVEVIKNLVSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQ 157 (544)
T ss_dssp ECTTSSBCCGGGHHHHHHHHHSBSCC------CTTBHHHHHHHHHHHTTCCTTSCEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred ecCCCCcCCHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCCcccCceEEeccCCCCCCHHHHHHHHhhhh
Confidence 00 0 0 013589999999999999999999999
Q ss_pred hC-CCeEEEeccCChhHHHHhhh
Q 029738 151 RA-GCLVFDMGLATTPACFMSTL 172 (189)
Q Consensus 151 a~-Gi~V~d~G~~pTP~l~fav~ 172 (189)
+. |++|.++|.++||+++|++.
T Consensus 158 ~~~G~~v~~~G~~ttP~l~~~v~ 180 (544)
T 2dka_A 158 SVPNTKYQDFGLFTTPELHYVTR 180 (544)
T ss_dssp TSSSEEEEEEEECCHHHHHHHHH
T ss_pred hhcCCeEEEecccccchheeeee
Confidence 99 99999999999999999763
No 14
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=94.18 E-value=0.0099 Score=54.99 Aligned_cols=15 Identities=13% Similarity=0.095 Sum_probs=12.4
Q ss_pred CCC-CCceEEEeCCCC
Q 029738 175 PFA-YDASIMILLCYR 189 (189)
Q Consensus 175 ~~~-a~gGImITASHN 189 (189)
+++ +++|||||||||
T Consensus 53 ~~~~~~~GImITASHN 68 (544)
T 2dka_A 53 YLQGKTVGVMITASHN 68 (544)
T ss_dssp HTTTCEEEEEECCC-C
T ss_pred hcCCcCceEEEeCCCC
Confidence 456 899999999999
No 15
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=92.99 E-value=0.43 Score=37.86 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=44.6
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh-----hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.| ..|-.|++.+.+-|.+.|++|+|+|.-.. |.+...+. ...-.++-||.|-+|
T Consensus 13 ~~i~igsD--haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 79 (155)
T 1o1x_A 13 VKIAIASD--HAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGT 79 (155)
T ss_dssp CEEEEEEC--STTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred eeEEEeeC--chHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 57999999 47899999999999999999999996433 33322221 013457889998765
No 16
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=92.12 E-value=0.43 Score=37.56 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=43.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh-----hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|..+++.+.+-|.+.|++|+|+|.-.. |.+...+. ...-.++-||.|-+|
T Consensus 3 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 68 (149)
T 2vvr_A 3 KIAFGCDH--VGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGT 68 (149)
T ss_dssp EEEEEECT--TGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 69999994 6889999999999999999999996333 33322221 013457889998765
No 17
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=90.56 E-value=0.49 Score=37.70 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=43.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC------hhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT------TPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p------TP~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.| ..|..+++.+.+-|.+.|++|+|+|.-. =|.+...+. ...-.++-||.|-+|
T Consensus 4 MkIaigsD--haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 71 (162)
T 2vvp_A 4 MRVYLGAD--HAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGS 71 (162)
T ss_dssp CEEEEEEC--HHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred CEEEEEeC--chhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 47999998 4789999999999999999999999432 333333221 012456889998765
No 18
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=89.86 E-value=1 Score=35.38 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=44.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh-----hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (189)
+|+||.|. .|-.|++.+.+-|.+.|++|+|+|.-.. |.+...+. ...-.++-||.|-+|
T Consensus 2 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 67 (149)
T 3he8_A 2 KIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 67 (149)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 58999985 6889999999999999999999986443 44433321 113457889998765
No 19
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=89.58 E-value=1.1 Score=35.85 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=43.6
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh-----hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (189)
..+|+||.|. .|-.|++.+.+-|.+.|++|+|+|.-.. |.+...+. ...-.++-||.|-+|
T Consensus 21 ~MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGT 88 (166)
T 3s5p_A 21 SMKVAFASDH--GGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGT 88 (166)
T ss_dssp TCEEEEEECG--GGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred ceEEEEEECc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 4689999995 6889999999999999999999996443 22222211 113457889998765
No 20
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=89.12 E-value=1.2 Score=35.74 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=45.1
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh-----hHHHHhhh--cCCCCCCceEEEeCC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT-----PACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT-----P~l~fav~--~~~~~a~gGImITAS 187 (189)
..+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-.. |.+...+. ...-.++-||.|-+|
T Consensus 20 ~MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGT 87 (169)
T 3ph3_A 20 HMKIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGT 87 (169)
T ss_dssp -CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred CCEEEEEeCc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3679999995 6788999999999999999999986443 44433321 113457889998765
No 21
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=88.08 E-value=1.8 Score=33.98 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=44.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh------hHHHHhhhcCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT------PACFMSTLLPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT------P~l~fav~~~~~~a~gGImITAS 187 (189)
.+|+||.|. .+-.|++.+.+-|.+.|++|+|+|.-.+ |.+...+...-..++-||.|-+|
T Consensus 8 mkI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCGT 73 (148)
T 4em8_A 8 KRVFLSSDH--AGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGT 73 (148)
T ss_dssp SEEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEESS
T ss_pred eEEEEEECc--hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCeEEEEccC
Confidence 479999995 6889999999999999999999986432 34433332111167889988765
No 22
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=83.70 E-value=2.1 Score=35.55 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=42.8
Q ss_pred CeEEEEecCCCChH---HHHHHHHHHHHhCCCeEEEeccCC---h-----hHHHH----hhhcCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGP---SLSVAVFAGLARAGCLVFDMGLAT---T-----PACFM----STLLPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~---~la~ava~gL~a~Gi~V~d~G~~p---T-----P~l~f----av~~~~~~a~gGImITAS 187 (189)
.+|+||.|.- ... .+++.+.+-|.+.|++|+|+|.-. . |-+.. ++. .-.++-||.|-+|
T Consensus 4 MkIaIgsDha-~~lKn~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~--~g~~d~GIliCGT 77 (216)
T 2ppw_A 4 MKIALINENS-QASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLN--TKAVDFVVTGCGT 77 (216)
T ss_dssp CEEEECCCTT-TGGGHHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHH--TTSCSEEEEEESS
T ss_pred cEEEEEcCCh-HhhhhhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHH--cCCCCeEEEEcCC
Confidence 5799999988 432 366999999999999999999653 2 22222 232 3457889998776
No 23
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=81.71 E-value=2.6 Score=34.07 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=44.5
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHh--CCCeEEEeccCC-----hhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLAR--AGCLVFDMGLAT-----TPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a--~Gi~V~d~G~~p-----TP~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.|. .+-.|++.+.+-|.+ .|++|+|+|.-. =|.+...+. ...-.++-||.|-+|
T Consensus 23 MkIaIgsDh--aG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 91 (179)
T 3k7p_A 23 RRVAIGTDH--PAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGS 91 (179)
T ss_dssp EEEEEEECT--GGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred eEEEEEECc--hHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccC
Confidence 379999995 678899999999999 999999998643 244433321 113457889998765
No 24
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=77.69 E-value=8 Score=28.99 Aligned_cols=55 Identities=18% Similarity=0.055 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.||.++..+++.|++..|+-..+ ....+++=-|.. -+..++.-|++..|-+|+..
T Consensus 19 PLTaENL~R~GLALCtLl~iek~-------~eeP~l~i~elN----FltmalsVGFM~gGG~V~vg 73 (126)
T 2ehp_A 19 PLTAENLFRIGLALCTLWILDKE-------IEEPTLSIPETN----FVTLALSVGFMNAGGSVNVG 73 (126)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTC-------CSSCEEEESSCS----HHHHHHHHHHHHTTCEEEES
T ss_pred cccHHHHHHHHHHHHHHHHHHhh-------hcCCeeeecccc----eeeeeeeeeEeccCcceEee
Confidence 69999999999999998875421 123355555554 46677888999999988753
No 25
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=76.96 E-value=3.9 Score=33.15 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=44.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCC--CeEEEeccC------ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAG--CLVFDMGLA------TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~G--i~V~d~G~~------pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.|. .+-.|++.+.+-|.+.| ++|+|+|.- .=|.+...+. ...-.++-||.|-+|
T Consensus 30 MkIaIgsDH--aG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGT 99 (184)
T 3sgw_A 30 LRLAIACDD--AGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGT 99 (184)
T ss_dssp EEEEEEECG--GGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred cEEEEEECc--hhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 579999995 68899999999999999 799999975 2344433221 113457889999765
No 26
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=76.68 E-value=13 Score=32.79 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCC-hHHHHHHHHHHHHhCCCeEEE
Q 029738 98 SAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVS-GPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 98 ~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~s-S~~la~ava~gL~a~Gi~V~d 158 (189)
+...++-..+-+|-... ....+|+|-|++... .+.++++++++|.+.|+++..
T Consensus 246 ~~~~~ii~~Y~~w~~~~--------~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~ 299 (410)
T 4dik_A 246 KDPQRLLNHYVSVAKGD--------PKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVV 299 (410)
T ss_dssp SCHHHHHHHHHHHHHTC--------CCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHHHHhhccc--------ccccceeeEEecccChHHHHHHHHHHHHHhcCCceEE
Confidence 34566666777775432 124589999999975 567999999999999999764
No 27
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=74.68 E-value=4 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=41.5
Q ss_pred CeEEEEecCCCChHHHHH-----HHHHHHHhCCCeEEEecc--C-----ChhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 126 VKVSLGKDPRVSGPSLSV-----AVFAGLARAGCLVFDMGL--A-----TTPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~-----ava~gL~a~Gi~V~d~G~--~-----pTP~l~fav~--~~~~~a~gGImITAS 187 (189)
.+|+||.|.- ..+++ .+.+-|.+.|++|+|+|. - .=|.....+. ...-.++-||.|-+|
T Consensus 4 MkIaigsDha---~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGT 76 (214)
T 3ono_A 4 MKIALMMENS---QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGT 76 (214)
T ss_dssp CEEEECCCGG---GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESS
T ss_pred cEEEEECCCc---HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 5899999986 55566 999999999999999994 2 2233332211 113457889999776
No 28
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=69.98 E-value=14 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029738 125 DVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 125 ~~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
..+|+|-|++.. +.+.++++++++|.+.|++|..+.+..
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~ 43 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGA 43 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcC
Confidence 357999999985 788999999999999998876554433
No 29
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=54.28 E-value=23 Score=25.22 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=23.0
Q ss_pred EEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEe
Q 029738 128 VSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 128 VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
|+|-|.+.. +.+.++++++++|.+.|++|..+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~ 33 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTI 33 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE
Confidence 345566664 57889999999999888765433
No 30
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=52.60 E-value=31 Score=26.95 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeCC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILLC 187 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITAS 187 (189)
..+|+++.=.-..-..=+..++..|..+|++|+++|. +|...+--++. ..+.+ .|.++++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~--~~~~d-~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK--KYQPD-IVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH--HHCCS-EEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEecc
Confidence 4578888633333333345667788999999999985 56666655553 34443 4666654
No 31
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=52.20 E-value=80 Score=26.38 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 98 SAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 98 ~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
+.+..+...+-+|+... ...+|+|.|.+.. +.+.++++++++|...|++|..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~---------~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~ 289 (402)
T 1e5d_A 234 DQCTFAVQKYVEYAEQK---------PTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC 289 (402)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCHHHHHHHHHHHhcCC---------CCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45666666677776542 1357888888875 4678899999999999977654433
No 32
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=52.15 E-value=34 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=27.2
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEec
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
+|+|-|.+.. +.+.++++++++|.+.|++|..+.
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 36 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVD 36 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4777788874 788999999999999998765443
No 33
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=52.10 E-value=24 Score=25.48 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=27.1
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
+|+|-|.++. +.+.+++.++++|.+.|++|..+.+
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 38 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNA 38 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEeh
Confidence 5777777764 5788999999999999987655433
No 34
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=51.38 E-value=75 Score=25.31 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=37.0
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEE
Q 029738 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMI 184 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImI 184 (189)
..+|+++. |.+.-|..+ +...|..+|++|+++|. +|...+--++. +.+.+ -|.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~i---v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~--~~~~d-~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRL---VTTMLGANGFQIVDLGVDVLNENVVEEAA--KHKGE-KVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHH---HHHHHHHTSCEEEECCSSCCHHHHHHHHH--HTTTS-CEEE
T ss_pred CCeEEEEeCCCChhHHHHHH---HHHHHHHCCCeEEEcCCCCCHHHHHHHHH--HcCCC-EEEE
Confidence 46899986 666666555 56678999999999996 55555544543 44544 4666
No 35
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=48.85 E-value=13 Score=31.16 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=39.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC--------hhHHHHhhh--cCCCCCCceEEEeCC
Q 029738 128 VSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT--------TPACFMSTL--LPPFAYDASIMILLC 187 (189)
Q Consensus 128 VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p--------TP~l~fav~--~~~~~a~gGImITAS 187 (189)
|+++-|.-..-..|++.+.+-|.+.|++|+|+|.-. =|.+...+. ...-.++-||.|-+|
T Consensus 24 li~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGT 93 (231)
T 3c5y_A 24 LIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGT 93 (231)
T ss_dssp ECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESS
T ss_pred EEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 344444444445999999999999999999999643 233333221 012457889998765
No 36
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=47.48 E-value=22 Score=26.34 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=28.6
Q ss_pred CeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhh
Q 029738 126 VKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMST 171 (189)
Q Consensus 126 ~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav 171 (189)
.+|+++. |.+.-+.. .++..|...|++|+++|. .|...+--++
T Consensus 4 ~~vvla~~~~d~HdiG~~---~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a 50 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNK---ILDHAFTNAGFNVVNIGVLSPQELFIKAA 50 (137)
T ss_dssp CEEEEEEETTCCCCHHHH---HHHHHHHHTTCEEEEEEEEECHHHHHHHH
T ss_pred CEEEEEeCCCchhHHHHH---HHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 4666654 65555543 556788999999999985 5555554444
No 37
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=45.68 E-value=1.2e+02 Score=24.60 Aligned_cols=88 Identities=14% Similarity=-0.067 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHH---HhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHH
Q 029738 94 DLTPSAVEAIAESFGEWVI---RSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFM 169 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~---~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~f 169 (189)
.++...+...+..+-..+. ...... .....+|+++.=.-..-..=+..++..|...|++|+++|. +|...+.-
T Consensus 92 ~~~v~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~ 168 (258)
T 2i2x_B 92 VIFLPNVMMSADAMLEGIEYCKENSGAT---PKTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLA 168 (258)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTSSC---CCCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccc---cCCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 5666665555555444442 221100 1234678888644333333455567788999999999984 56666655
Q ss_pred hhhcCCCCCCceEEEeCC
Q 029738 170 STLLPPFAYDASIMILLC 187 (189)
Q Consensus 170 av~~~~~~a~gGImITAS 187 (189)
++. ..+.+ .|.++++
T Consensus 169 ~~~--~~~~d-~V~lS~l 183 (258)
T 2i2x_B 169 AVQ--KEKPI-MLTGTAL 183 (258)
T ss_dssp HHH--HHCCS-EEEEECC
T ss_pred HHH--HcCCC-EEEEEee
Confidence 553 34433 4555553
No 38
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=45.15 E-value=29 Score=26.45 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=36.0
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeC
Q 029738 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITA 186 (189)
..+|+++. |.+.-|..+ ++..|...|++|+++|. +|...+--++. ..+.+ -|.+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~---va~~l~~~G~eVi~lG~~~p~e~lv~aa~--~~~~d-iV~lS~ 77 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKV---VARALRDAGFEVVYTGLRQTPEQVAMAAV--QEDVD-VIGVSI 77 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHH---HHHHHHHTTCEEECCCSBCCHHHHHHHHH--HTTCS-EEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHH---HHHHHHHCCCEEEECCCCCCHHHHHHHHH--hcCCC-EEEEEe
Confidence 46787775 777666554 45678999999999986 55555544443 44544 344443
No 39
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=44.17 E-value=51 Score=23.78 Aligned_cols=54 Identities=11% Similarity=-0.051 Sum_probs=37.2
Q ss_pred eEEEEecCC-CChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeCCC
Q 029738 127 KVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILLCY 188 (189)
Q Consensus 127 ~VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITASH 188 (189)
+|+|-|.+. -+.+.+++.+++.|.+.|++|..+.... + . .-..++.-|.++..|
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~-~----~---~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPL-L----E---DLPASGIWLVISSTH 57 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTT-S----C---SSCSEEEEEEECCTT
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCC-H----H---HcccCCeEEEEECcc
Confidence 477778877 4789999999999999999987654321 0 0 012356666667666
No 40
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=41.87 E-value=89 Score=26.05 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEec
Q 029738 100 VEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMG 160 (189)
Q Consensus 100 v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G 160 (189)
+..+...+-+|.... ...+++|.|.+.. +.+.++++++++|.+.|++|..+.
T Consensus 235 ~~~~l~~~~~~~~~~---------~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~ 287 (398)
T 1ycg_A 235 PGRIIEAYARWAEGQ---------GKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFK 287 (398)
T ss_dssp HHHHHHHHHHHHHTC---------CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhccC---------CcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444555565432 1257889898884 578899999999999998775443
No 41
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=39.56 E-value=1.1e+02 Score=25.59 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=62.9
Q ss_pred ceeeeeeecccccccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 029738 46 IKFTHVKSSVTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVED 125 (189)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~ 125 (189)
.+-.-.-.-.|.+ ++-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +
T Consensus 14 ~~Gv~~a~vTPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-----------r 81 (306)
T 1o5k_A 14 FRGVGTAIVTPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-----------K 81 (306)
T ss_dssp CSEEEEECCCCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-----------S
T ss_pred cCCeeeeeecCcC-CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------C
Confidence 3444445556666 666666666664444445789998877777766689999888888777765431 2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
..|++|-=.-.+.+. ..+++-..+.|++.+.+
T Consensus 82 vpViaGvg~~st~~a--i~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 82 IPVIVGAGTNSTEKT--LKLVKQAEKLGANGVLV 113 (306)
T ss_dssp SCEEEECCCSCHHHH--HHHHHHHHHHTCSEEEE
T ss_pred CeEEEcCCCccHHHH--HHHHHHHHhcCCCEEEE
Confidence 457777533333332 33456667778886643
No 42
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=37.39 E-value=53 Score=25.60 Aligned_cols=55 Identities=5% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEE--EeccCChhHHHHhhhcCCCCCCceEEEeCCCC
Q 029738 126 VKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF--DMGLATTPACFMSTLLPPFAYDASIMILLCYR 189 (189)
Q Consensus 126 ~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~--d~G~~pTP~l~fav~~~~~~a~gGImITASHN 189 (189)
.+|+|-|.+.. +.+.+++.+++.|...|++|. ++.-.. .- -..++.-|+++.+||
T Consensus 22 ~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~------~~---l~~~d~vi~g~~Ty~ 79 (191)
T 1bvy_F 22 TPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA------GN---LPREGAVLIVTASYN 79 (191)
T ss_dssp CCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST------TC---CCSSSEEEEEECCBT
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh------hh---hhhCCeEEEEEeecC
Confidence 57888899885 678999999999999998754 443321 11 123566777787764
No 43
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=36.30 E-value=1.5e+02 Score=23.83 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=36.7
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEE--EeccCChhHHHHhhhcCCCCCCceEEEeCCC
Q 029738 126 VKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF--DMGLATTPACFMSTLLPPFAYDASIMILLCY 188 (189)
Q Consensus 126 ~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~--d~G~~pTP~l~fav~~~~~~a~gGImITASH 188 (189)
.+|+|-|.+.. +++.+++.+++.| ..|++|. ++.-...-.+ ..++.-|.+|+++
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l--------~~~~~vI~~tsTy 97 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCL--------EEERLLLVVTSTF 97 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGG--------GTCSEEEEEEECB
T ss_pred CcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHh--------ccCCeEEEEEecc
Confidence 57999999985 7889999999988 5787654 4433221111 1346677888776
No 44
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=36.00 E-value=51 Score=23.18 Aligned_cols=40 Identities=10% Similarity=-0.018 Sum_probs=31.7
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChh
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP 165 (189)
++|+|+.|....+....+..+.-....|.++..+.+.+.+
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 46 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNI 46 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCc
Confidence 5899999999999988888788777778888877655543
No 45
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=34.64 E-value=1.7e+02 Score=24.22 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=57.0
Q ss_pred ccccccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecC
Q 029738 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (189)
Q Consensus 55 ~~~~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~ 134 (189)
.|.+ ++-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+... + +..|++|-=.
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-------g----rvpviaGvg~ 78 (294)
T 2ehh_A 11 TPFK-EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA-------G----RIKVIAGTGG 78 (294)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-------T----SSEEEEECCC
T ss_pred cCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEecCC
Confidence 3445 55556665665444444679999888777777678999988888777766542 1 2457777543
Q ss_pred CCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 135 R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
-.+.+ +..+++-..+.|++.+.+
T Consensus 79 ~~t~~--ai~la~~A~~~Gadavlv 101 (294)
T 2ehh_A 79 NATHE--AVHLTAHAKEVGADGALV 101 (294)
T ss_dssp SCHHH--HHHHHHHHHHTTCSEEEE
T ss_pred CCHHH--HHHHHHHHHhcCCCEEEE
Confidence 22222 233456667788886643
No 46
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=34.53 E-value=1.4e+02 Score=22.30 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
.-||..++..++.+++...+. |. ..-.|.| +..-+ + .+++..+|...|++|..+ ...|.|
T Consensus 55 k~tp~AA~~aa~~~~~~~~~~-----Gi--~~v~V~v-kG~G~-G---re~airaL~~~Gl~I~~I~DvTpiP 115 (129)
T 2vqe_K 55 KGTPYAAQLAALDAAKKAMAY-----GM--QSVDVIV-RGTGA-G---REQAIRALQASGLQVKSIVDDTPVP 115 (129)
T ss_dssp GGSHHHHHHHHHHHHHHHHTT-----TC--CEEEEEE-ESCCT-T---HHHHHHHHHTSSSEEEECEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHh-----CC--eEEEEEE-ECCCC-C---HHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 678999999999999988764 31 1122333 33332 2 457788999999999876 566666
No 47
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=34.41 E-value=1.2e+02 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=28.3
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEEEecc
Q 029738 126 VKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVFDMGL 161 (189)
Q Consensus 126 ~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~d~G~ 161 (189)
.+|+|-|.+.. +.+.++++++++|.+.|++|..+.+
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~ 293 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCL 293 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57888887764 5789999999999999987755443
No 48
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=33.95 E-value=2e+02 Score=23.94 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred ccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHH
Q 029738 63 VVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLS 142 (189)
Q Consensus 63 ~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la 142 (189)
+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +..|++|--.-.+ .=+
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~g-----------rvpviaGvg~~~t--~~a 99 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD-----------RARVIAGAGTYDT--AHS 99 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------TSEEEEECCCSCH--HHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCCCCH--HHH
Confidence 444444443333445799998887877776789999988888777765431 2468777533222 223
Q ss_pred HHHHHHHHhCCCeEEEe
Q 029738 143 VAVFAGLARAGCLVFDM 159 (189)
Q Consensus 143 ~ava~gL~a~Gi~V~d~ 159 (189)
..+++-..+.|++.+.+
T Consensus 100 i~la~~a~~~Gadavlv 116 (304)
T 3l21_A 100 IRLAKACAAEGAHGLLV 116 (304)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 33456677778887654
No 49
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=33.01 E-value=51 Score=22.88 Aligned_cols=39 Identities=5% Similarity=-0.128 Sum_probs=31.3
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC-Ch
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA-TT 164 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~-pT 164 (189)
.+|+|+.|....+....+..+.-....|.++..+-.. +.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 44 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDV 44 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 5799999999988887777677666779998888766 54
No 50
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=31.32 E-value=36 Score=23.81 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=33.1
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhH
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPA 166 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~ 166 (189)
++|+|+.|....+....+..+.-....|.++..+.+.+.|.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~ 43 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHS 43 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcc
Confidence 47999999998888877777777777899998887776665
No 51
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=31.15 E-value=67 Score=22.27 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=29.2
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLA 162 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~ 162 (189)
.+|+|+.|....+....+..+.-....|.++..+-..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 39 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVD 39 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 4799999999999887777677666778888776554
No 52
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=29.94 E-value=85 Score=29.30 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCeEEEEe---cCCCChHHHHHHHHHHHHhCCCeEEEecc-CChhHHHHhhhcCCCCCCceEEEeCC
Q 029738 125 DVKVSLGK---DPRVSGPSLSVAVFAGLARAGCLVFDMGL-ATTPACFMSTLLPPFAYDASIMILLC 187 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la~ava~gL~a~Gi~V~d~G~-~pTP~l~fav~~~~~~a~gGImITAS 187 (189)
..+|+++. |.+.-| +..++..|..+|++|+++|. +|...+--++. ..+.+ .|.++++
T Consensus 98 ~~kVLlatv~GD~HdiG---~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~--~~~~d-iVgLS~l 158 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIG---KNIVGVVLQCNNYEIVDLGVMVPAEKILRTAK--EVNAD-LIGLSGL 158 (579)
T ss_dssp SCEEEEEEBTTCCCCHH---HHHHHHHHHTTTCEEEECCSSBCHHHHHHHHH--HHTCS-EEEEECC
T ss_pred CCeEEEEECCCCCchHH---HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCCC-EEEEEec
Confidence 46898886 555555 44566788999999999985 56656655553 34443 4566554
No 53
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=29.85 E-value=1.2e+02 Score=21.69 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=30.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCC---CCceEEEeCCCC
Q 029738 127 KVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFA---YDASIMILLCYR 189 (189)
Q Consensus 127 ~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~---a~gGImITASHN 189 (189)
+|-|=.|.............+-|...|++|+..... + .. |.+ .|+-+.+++|.|
T Consensus 55 ~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~~~--~-----~~--H~K~~iiD~~~~~iGS~N 111 (155)
T 1byr_A 55 DVKIVIDERGNTGRASIAAMNYIANSGIPLRTDSNF--P-----IQ--HDKVIIVDNVTVETGSFN 111 (155)
T ss_dssp EEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEECSS--S-----CC--CCCEEEETTTEEEEESCC
T ss_pred EEEEEEeCccccccccHHHHHHHHHCCCeEEEcCCc--c-----cc--cceEEEECCCEEEEECCC
Confidence 344444444332234455667788999999876321 1 11 222 366678888877
No 54
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=29.80 E-value=78 Score=24.16 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEE----ecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLG----KDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVG----rD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
.-||..+...++.+++...+. |. ..-.|.|= .-..--++ =.+++..+|...|+++..+ ...|.|
T Consensus 54 ksTpyAAq~aa~~~a~~a~e~-----Gi--~~v~V~vra~gg~~~kgpG~-Gr~sairaL~~~Gl~I~~I~DvTpiP 122 (137)
T 3u5c_O 54 ESSPYAAMLAAQDVAAKCKEV-----GI--TAVHVKIRATGGTRTKTPGP-GGQAALRALARSGLRIGRIEDVTPVP 122 (137)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH-----TC--CEEECEEECSCTTSCCSCCG-GGHHHHHHHHTTTCEECCCEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEEeccCCCcccCCCc-chHHHHHHHHhCCCEEEEEEEcCCCC
Confidence 688999999999999887765 31 12234441 11111122 2566788899999999876 577766
No 55
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.57 E-value=1.6e+02 Score=24.20 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=56.2
Q ss_pred ccccccccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecC
Q 029738 55 VTDKYNEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP 134 (189)
Q Consensus 55 ~~~~~~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~ 134 (189)
.|.+ ++-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+... + +..|++|-=.
T Consensus 11 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-------g----r~pviaGvg~ 78 (289)
T 2yxg_A 11 TPFK-NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN-------G----RVQVIAGAGS 78 (289)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-------T----SSEEEEECCC
T ss_pred cCcC-CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCCC
Confidence 3444 55566665665444444678999887777777678999988887777766542 1 2457776533
Q ss_pred CCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 135 RVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 135 R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
-.+.+ +..+++-..+.|++.+.+
T Consensus 79 ~~t~~--ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 79 NCTEE--AIELSVFAEDVGADAVLS 101 (289)
T ss_dssp SSHHH--HHHHHHHHHHHTCSEEEE
T ss_pred CCHHH--HHHHHHHHHhcCCCEEEE
Confidence 22222 233455667778886643
No 56
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=29.48 E-value=1.7e+02 Score=22.73 Aligned_cols=62 Identities=10% Similarity=-0.011 Sum_probs=44.9
Q ss_pred eEEEEec------CCCChHHHHHHHHHHHHhCCCeEEEeccCChhHHHHhhhc-----CCCCCCceEEEeCCC
Q 029738 127 KVSLGKD------PRVSGPSLSVAVFAGLARAGCLVFDMGLATTPACFMSTLL-----PPFAYDASIMILLCY 188 (189)
Q Consensus 127 ~VvVGrD------~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~-----~~~~a~gGImITASH 188 (189)
-++|+.. .|..+..=++.+.+.|...|++|...--.+.-.+.-.+.. .+.+++..+++-+||
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsH 118 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSH 118 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESC
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecC
Confidence 4677876 6888999999999999999999987654555555433310 123567788888898
No 57
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=29.37 E-value=1.5e+02 Score=21.85 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
.-||..++..++.+++...+. |. ..-.|.| +..-+. .+++..+|...|++|..+ ...|.|
T Consensus 45 k~tp~AA~~aa~~~~~~~~~~-----Gi--~~v~v~v-kG~G~G----r~~airaL~~~Gl~I~~I~DvTpip 105 (117)
T 3r8n_K 45 KSTPFAAQVAAERCADAVKEY-----GI--KNLEVMV-KGPGPG----RESTIRALNAAGFRITNITDVTPIP 105 (117)
T ss_dssp GSSHHHHHHHHHHHHHHHTTS-----CC--CEEEEEE-ECSSSS----TTHHHHHHHHTTCEEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHh-----CC--cEEEEEE-eCCCcc----HHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 678999999888888877654 31 1223444 333222 345677888999999877 577766
No 58
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=28.48 E-value=2.3e+02 Score=23.76 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=54.1
Q ss_pred cccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChH
Q 029738 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (189)
Q Consensus 60 ~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~ 139 (189)
++-+..+.+.++-+..-..|+.|++.-|..|+...||.+.-.++.+...+.... +..|++|--.-.+.+
T Consensus 39 dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpViaGvg~~~t~~ 107 (315)
T 3na8_A 39 DGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH-----------RVPTIVSVSDLTTAK 107 (315)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEECCCSSHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecCCCCHHH
Confidence 334444545544333446789998887777776789999888887777665431 245777643322222
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029738 140 SLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 140 ~la~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 108 --ai~la~~A~~~Gadavlv 125 (315)
T 3na8_A 108 --TVRRAQFAESLGAEAVMV 125 (315)
T ss_dssp --HHHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHHHHhcCCCEEEE
Confidence 334456677788887654
No 59
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=27.28 E-value=48 Score=27.01 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 94 DLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 94 ~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.++++. -+.++++|+.+. + .++++|-++.-..|..+++++.+.+.+.|.+|...
T Consensus 105 ~~~~~~---~~~~~a~~~~~~-----g----~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~ 158 (327)
T 3ckm_A 105 GLSPED---EAESAANKMWND-----G----VRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANI 158 (327)
T ss_dssp CCCHHH---HHHHHHHHHHHT-----T----CCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEE
T ss_pred ecChHH---HHHHHHHHHHhc-----C----CeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEE
Confidence 345544 355677887664 2 24677777777899999999999999999998764
No 60
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=27.25 E-value=2.6e+02 Score=23.39 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=54.9
Q ss_pred cccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 62 ~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+... + +..|++|--. +-.=
T Consensus 29 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~-------g----rvpViaGvg~---~t~~ 94 (316)
T 3e96_A 29 SIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH-------G----RALVVAGIGY---ATST 94 (316)
T ss_dssp CBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-------T----SSEEEEEECS---SHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-------C----CCcEEEEeCc---CHHH
Confidence 344454554433344678999888787777678999988888777766543 1 2468888742 2333
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 95 ai~la~~A~~~Gadavlv 112 (316)
T 3e96_A 95 AIELGNAAKAAGADAVMI 112 (316)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 334567777889987764
No 61
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=26.65 E-value=38 Score=23.69 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=29.3
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
++|+|+.|....+....+..+.-....|.++..+...+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 43 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVD 43 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 58999999998888877776776677788887665433
No 62
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=26.45 E-value=2.9e+02 Score=23.19 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +..|++|--.-.+.+
T Consensus 38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpViaGvg~~st~~- 105 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK-----------RVPVVAGAGSNSTSE- 105 (315)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBEEECCCSSHHH-
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCC-----------CCcEEEeCCCCCHHH-
Confidence 34455555554443446899999888877777789999888887777665432 245666643333222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 106 -ai~la~~A~~~Gadavlv 123 (315)
T 3si9_A 106 -AVELAKHAEKAGADAVLV 123 (315)
T ss_dssp -HHHHHHHHHHTTCSEEEE
T ss_pred -HHHHHHHHHhcCCCEEEE
Confidence 233456667778886653
No 63
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=26.42 E-value=2.6e+02 Score=23.46 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCC-CChHHHHHHHHHHHHhCCCeEEE--eccCChhHHHHhh
Q 029738 95 LTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR-VSGPSLSVAVFAGLARAGCLVFD--MGLATTPACFMST 171 (189)
Q Consensus 95 LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d--~G~~pTP~l~fav 171 (189)
++.+.+..+...+-+|+.... ...+|+|-|.+. -+++.++++++++|.+.|++|.. +.-.+.+.+.-.+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~--------~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l 305 (414)
T 2q9u_A 234 WRGDAMGLAIAEYDRWSKGQH--------CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHT 305 (414)
T ss_dssp EEHHHHHHHHHHHHHHHTTCC--------CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHhcCcc--------cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHH
Confidence 443325555555666653210 124677777776 45788999999999999977654 4333322222122
Q ss_pred hcCCCCCCceEEEeCCC
Q 029738 172 LLPPFAYDASIMILLCY 188 (189)
Q Consensus 172 ~~~~~~a~gGImITASH 188 (189)
..+|+=|+.|..+
T Consensus 306 ----~~~D~iiigsP~y 318 (414)
T 2q9u_A 306 ----YDSGAVAFASPTL 318 (414)
T ss_dssp ----HTCSEEEEECCCB
T ss_pred ----HhCCEEEEEcCcc
Confidence 2456555555544
No 64
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=26.24 E-value=1.6e+02 Score=20.23 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=20.6
Q ss_pred EEEEecCC-CChHHHHHHHHHHHHhCCCeEEEe
Q 029738 128 VSLGKDPR-VSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 128 VvVGrD~R-~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
|+|-|.++ -+++.+++.++++|.+.|++|..+
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~ 34 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESV 34 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 34445554 346778888888888877776433
No 65
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=25.94 E-value=56 Score=22.68 Aligned_cols=40 Identities=8% Similarity=-0.106 Sum_probs=29.8
Q ss_pred CeEEEEecCCCC--hHHHHHHHHHHHHhCCCeEEEeccCChh
Q 029738 126 VKVSLGKDPRVS--GPSLSVAVFAGLARAGCLVFDMGLATTP 165 (189)
Q Consensus 126 ~~VvVGrD~R~s--S~~la~ava~gL~a~Gi~V~d~G~~pTP 165 (189)
++|+|+.|.... +....+..+.-....|.++..+...+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 43 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSL 43 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCC
Confidence 479999999988 7777666666667778888877655543
No 66
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.92 E-value=1.5e+02 Score=23.71 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
...+.++++|+.+. | .++|.+=++....+....+.+.+.|.+.|++|..
T Consensus 124 ~~~~~~~~~~l~~~-----g----~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~ 172 (368)
T 4eyg_A 124 AQSSIIIGDWAAKN-----G----IKKVATLTSDYAPGNDALAFFKERFTAGGGEIVE 172 (368)
T ss_dssp HHHHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHc-----C----CCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEE
Confidence 34566788888764 2 2566655566667888899999999999999764
No 67
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=25.57 E-value=1.5e+02 Score=23.96 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
..+.++++|+.+. + .++|.+=++.-..+....+.+.+.|.+.|++|..
T Consensus 126 ~~~~~~~~~l~~~-----g----~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 173 (375)
T 3i09_A 126 ALAKGTGSAVVKQ-----G----GKTWFFLTADYAFGKALEKNTADVVKANGGKVLG 173 (375)
T ss_dssp HHHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHc-----C----CceEEEEecccHHHHHHHHHHHHHHHHcCCEEee
Confidence 4566788888764 2 2566665666677888999999999999999864
No 68
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.45 E-value=2.8e+02 Score=22.79 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred ccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHH
Q 029738 63 VVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLS 142 (189)
Q Consensus 63 ~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la 142 (189)
+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+... + +..|++|--.-.+.+ +
T Consensus 20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-------g----rvpviaGvg~~~t~~--a 86 (292)
T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-------K----RVPVIAGTGTNDTEK--S 86 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-------T----SSCEEEECCCSCHHH--H
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCCcccHHH--H
Confidence 34444444333334678999887777776678999988888777766542 1 245777743322222 3
Q ss_pred HHHHHHHHhCCCeEEEe
Q 029738 143 VAVFAGLARAGCLVFDM 159 (189)
Q Consensus 143 ~ava~gL~a~Gi~V~d~ 159 (189)
..+++-..+.|++.+.+
T Consensus 87 i~la~~a~~~Gadavlv 103 (292)
T 3daq_A 87 IQASIQAKALGADAIML 103 (292)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34456667778886643
No 69
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=25.22 E-value=1.5e+02 Score=24.26 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe
Q 029738 103 IAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 103 ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
.+.+++.|+.+. + .++|.|-++.-..+..+.+++.+.|.+.|.+|+..
T Consensus 126 ~~~~~~~~~~~~-----g----~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~ 173 (371)
T 4f06_A 126 NTVPAAKVAKQK-----G----ATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEA 173 (371)
T ss_dssp HHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhhhhhhc-----C----ceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEE
Confidence 445667777654 2 25777777777788999999999999999998753
No 70
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=24.94 E-value=1.7e+02 Score=23.21 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 101 EAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 101 ~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
...+.++++|+.+. | .++|.+=++....+....+.+.+.|.+.|++|..
T Consensus 120 ~~~~~~~~~~l~~~-----g----~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~ 168 (362)
T 3snr_A 120 PIMGKVLYEHMKKN-----N----VKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVG 168 (362)
T ss_dssp HHHHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc-----C----CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEE
Confidence 34566778888764 2 2466555666667888999999999999999764
No 71
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=24.91 E-value=2.9e+02 Score=22.79 Aligned_cols=86 Identities=19% Similarity=0.112 Sum_probs=54.1
Q ss_pred cccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 62 ~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... .+..|++|--.-.+.+
T Consensus 24 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g----------~rvpviaGvg~~~t~~-- 91 (301)
T 3m5v_A 24 KVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG----------TKVKVLAGAGSNATHE-- 91 (301)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT----------SSCEEEEECCCSSHHH--
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC----------CCCeEEEeCCCCCHHH--
Confidence 3444545544333446899999888877776789999888887777665432 0246777753322222
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 92 ai~la~~a~~~Gadavlv 109 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILS 109 (301)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 334456777888887654
No 72
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=24.80 E-value=2.3e+02 Score=27.39 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCeEEEE---ecCCCChHHHHHHHHHHHHhCCCeEEEeccCChh-HHHHhhhcCCCCCCceEEEe
Q 029738 125 DVKVSLG---KDPRVSGPSLSVAVFAGLARAGCLVFDMGLATTP-ACFMSTLLPPFAYDASIMIL 185 (189)
Q Consensus 125 ~~~VvVG---rD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP-~l~fav~~~~~~a~gGImIT 185 (189)
..+|+++ -|.+.-+.. .++..|..+|++|+++|.-.+| .+--++. ..+++ -|.++
T Consensus 604 r~kVvlatvg~D~HdiG~~---iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~--e~~ad-iVglS 662 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAK---VIATGFADLGFDVDIGPLFQTPREVAQQAV--DADVH-AVGVS 662 (762)
T ss_dssp CCEEEEECCSSCCCCHHHH---HHHHHHHHTTCEEEECCTTCCHHHHHHHHH--HTTCS-EEEEE
T ss_pred CCEEEEEecCcchhhHHHH---HHHHHHHhCCeEEeeCCCCCCHHHHHHHHH--HcCCC-EEEEe
Confidence 4678775 465555544 4566788999999999975555 3333332 34544 34444
No 73
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=24.62 E-value=2.9e+02 Score=22.65 Aligned_cols=86 Identities=7% Similarity=0.084 Sum_probs=52.2
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.-.++.+...+.... +..|++|--.-.+.+.
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pviaGvg~~~t~~a 85 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANK-----------RIPIIAGTGANSTREA 85 (291)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECCCSSHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-----------CCeEEEeCCCCCHHHH
Confidence 33444545544333446789998887777776789999888887777665431 2456666443333332
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
+ .+++-..+.|++.+.+
T Consensus 86 i--~la~~a~~~Gadavlv 102 (291)
T 3tak_A 86 I--ELTKAAKDLGADAALL 102 (291)
T ss_dssp H--HHHHHHHHHTCSEEEE
T ss_pred H--HHHHHHHhcCCCEEEE
Confidence 2 3345566678776643
No 74
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=23.89 E-value=1.8e+02 Score=23.41 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
..+.++++|+.+. | .++|.+=++.-..+....+.+.+.|.+.|+++..
T Consensus 137 ~~~~~~~~~l~~~-----g----~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~ 184 (375)
T 4evq_A 137 QIGRATGDAMIKA-----G----LKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVK 184 (375)
T ss_dssp HHHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHc-----C----CcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEE
Confidence 4566788888765 2 2466555555667888899999999999999864
No 75
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.62 E-value=1.3e+02 Score=22.91 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecC-----CCChHHHHHHHHHHHHhCCCeEEEe-ccCChh
Q 029738 93 VDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDP-----RVSGPSLSVAVFAGLARAGCLVFDM-GLATTP 165 (189)
Q Consensus 93 ~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~-----R~sS~~la~ava~gL~a~Gi~V~d~-G~~pTP 165 (189)
..-||..+...++.+++...+. |. ....|.| +.+ +.-++ -.+++..+|...|++|..+ ...|.|
T Consensus 53 ~ksTp~AA~~aa~~~~~~a~e~-----Gi--~~v~V~v-kG~gg~~~~~pG~-GresairaL~~~Gl~I~~I~DvTpiP 122 (137)
T 3j20_M 53 DEPSPYAAMLAARRAAEEALEK-----GI--VGVHIRV-RAPGGSKSKTPGP-GAQAAIRALARAGLKIGRVEDVTPIP 122 (137)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHH-----TE--EEEEEEE-ECCCSSSCCSCCT-HHHHHHHHHHHHTCEEEEEEECCCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHc-----CC--eEEEEEE-ECCCCCCCcCCCC-cHHHHHHHHHhCCCEEEEEEEcCCCC
Confidence 4679999999999999988765 21 1123333 332 21222 3566788899999999877 677776
No 76
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=23.49 E-value=1.3e+02 Score=21.24 Aligned_cols=53 Identities=11% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCC--CChHHHHHHHHHHHHhCCCeEEEe
Q 029738 98 SAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPR--VSGPSLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 98 ~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R--~sS~~la~ava~gL~a~Gi~V~d~ 159 (189)
...+++-.-+-.|++.. | .++|-|.--.| .-++.|+..++.+++..|.+-+++
T Consensus 27 selqkvlnelmdyikkq-----g----akrvrisitartkkeaekfaailikvfaelgyndinv 81 (106)
T 1qys_A 27 SELQKVLNELMDYIKKQ-----G----AKRVRISITARTKKEAEKFAAILIKVFAELGYNDINV 81 (106)
T ss_dssp SHHHHHHHHHHHHHHHH-----C----CSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhc-----C----CcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcceeE
Confidence 34566666677788765 3 24565555555 468889999999999999886653
No 77
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=23.32 E-value=75 Score=23.24 Aligned_cols=41 Identities=15% Similarity=-0.066 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEe--ccCChhH
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDM--GLATTPA 166 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~--G~~pTP~ 166 (189)
-.+|+|+.|....+....+..+.-.. .|.++..+ -+.+.|.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~ 59 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHED 59 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC----
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcc
Confidence 36899999999888877776666666 88888888 7666553
No 78
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.70 E-value=3.2e+02 Score=22.64 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=52.2
Q ss_pred cccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHH
Q 029738 62 VVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSL 141 (189)
Q Consensus 62 ~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~l 141 (189)
-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+... + +..|++|--.-.+.+
T Consensus 31 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-------g----r~pviaGvg~~~t~~-- 97 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-------K----NRLLLAGSGCESTQA-- 97 (307)
T ss_dssp CBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-------T----TSEEEEECCCSSHHH--
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-------C----CCcEEEecCCCCHHH--
Confidence 344444444333344678999888777776678999988877776555321 1 245777653322222
Q ss_pred HHHHHHHHHhCCCeEEEe
Q 029738 142 SVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 142 a~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 98 ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 98 TVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 334467778889987754
No 79
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=22.49 E-value=1.5e+02 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEE
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFD 158 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d 158 (189)
..+.++++|+.+. + .++|.+=++.-..+..+.+.+.+.|.+.|++|..
T Consensus 128 ~~~~~~~~~l~~~-----g----~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 175 (379)
T 3n0w_A 128 SIVKTVVQAQLAK-----G----YKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVG 175 (379)
T ss_dssp HHHHHHHHHHHHT-----T----CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHc-----C----CcEEEEEecccchhHHHHHHHHHHHHHcCCEEEE
Confidence 4567788888764 2 2567666676677888999999999999999864
No 80
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.23 E-value=3.3e+02 Score=22.42 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=53.5
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +..|++|--.-.+.+.
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpviaGvg~~~t~~a 91 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAK-----------RVPVIAGTGANNTVEA 91 (297)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECCCSSHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEEeCCCcCHHHH
Confidence 34445555544333446799998887877776789999888887777665431 2457776433333332
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
..+++-..+.|++.+.+
T Consensus 92 --i~la~~a~~~Gadavlv 108 (297)
T 3flu_A 92 --IALSQAAEKAGADYTLS 108 (297)
T ss_dssp --HHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHHHHcCCCEEEE
Confidence 33356667778886653
No 81
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.98 E-value=3.2e+02 Score=22.38 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred cccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChH
Q 029738 60 NEVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGP 139 (189)
Q Consensus 60 ~~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~ 139 (189)
++ +..+.+.++-+..-..|+.|++.-|..|+...||.+.-.++.+...+... + +..|++|-=.-.+.+
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-------g----r~pvi~Gvg~~~t~~ 84 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVN-------K----RIPVIAGTGSNNTAA 84 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-------T----SSCEEEECCCSSHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-------C----CCcEEEeCCcccHHH
Confidence 44 55555555444344578999887776676668999988888777766542 1 245777764332222
Q ss_pred HHHHHHHHHHHhCCCeEEEe
Q 029738 140 SLSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 140 ~la~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 85 --ai~la~~a~~~Gadavlv 102 (291)
T 3a5f_A 85 --SIAMSKWAESIGVDGLLV 102 (291)
T ss_dssp --HHHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHHHHhcCCCEEEE
Confidence 333466778889997654
No 82
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.53 E-value=3.5e+02 Score=22.47 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=52.5
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.. .+ ..|++|-=.-.+.+.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-gr-----------vpViaGvg~~~t~~a 91 (313)
T 3dz1_A 24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KS-----------MQVIVGVSAPGFAAM 91 (313)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TT-----------SEEEEECCCSSHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CC-----------CcEEEecCCCCHHHH
Confidence 344555555544334467899988877777667899998888777766654 21 457776433333332
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
..+++-..+.|++.+.+
T Consensus 92 --i~la~~A~~~Gadavlv 108 (313)
T 3dz1_A 92 --RRLARLSMDAGAAGVMI 108 (313)
T ss_dssp --HHHHHHHHHHTCSEEEE
T ss_pred --HHHHHHHHHcCCCEEEE
Confidence 23456667778887654
No 83
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=21.53 E-value=1.5e+02 Score=21.83 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCCh
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLATT 164 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~pT 164 (189)
.+.|+|=-|++.+...-...+++-|...|+.|+-+|+-+.
T Consensus 123 ~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 123 PKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp CEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC--
T ss_pred CEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCc
Confidence 3568889999988764445567889999999999887543
No 84
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.27 E-value=3.5e+02 Score=22.36 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=52.0
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.-.++.+...+.... +..|++|-=.-.+.+
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-----------rvpViaGvg~~~t~~- 94 (303)
T 2wkj_A 27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG-----------KIKLIAHVGCVSTAE- 94 (303)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------TSEEEEECCCSSHHH-
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecCCCCHHH-
Confidence 33444445544333445789998877777776789999888887777665431 245776643322222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 95 -ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 95 -SQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp -HHHHHHHHHHHTCSEEEE
T ss_pred -HHHHHHHHHhCCCCEEEe
Confidence 233455567778886543
No 85
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.86 E-value=62 Score=23.01 Aligned_cols=40 Identities=8% Similarity=-0.146 Sum_probs=29.3
Q ss_pred CeEEEEec--CCCChHHHHHHHHHHHHhCCCeEEEeccCChh
Q 029738 126 VKVSLGKD--PRVSGPSLSVAVFAGLARAGCLVFDMGLATTP 165 (189)
Q Consensus 126 ~~VvVGrD--~R~sS~~la~ava~gL~a~Gi~V~d~G~~pTP 165 (189)
.+|+|+.| ....+....+..+.-....|.++..+.+.+.+
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 57 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESE 57 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCC
Confidence 58999999 88888877777677777778888776554443
No 86
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=20.74 E-value=1.5e+02 Score=23.65 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHHHHHHHHHHHHhCCCeEE
Q 029738 102 AIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 102 ~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~ 157 (189)
..+.++++|+.+.. | .++|.+=++....+....+.+.+.|.+.|+++.
T Consensus 123 ~~~~~~~~~l~~~~----g----~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 123 QQGGIAGKYLADHF----K----DAKVAIIHDKTPYGQGLADETKKAANAAGVTEV 170 (356)
T ss_dssp HHHHHHHHHHHHHC----T----TCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhc----C----CCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 34567788877652 2 246766666667788899999999999999874
No 87
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=20.71 E-value=3.2e+02 Score=21.64 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=29.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029738 126 VKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 126 ~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
+.|+|=-|++...+.-....++-|...|+.|+-+|+-.
T Consensus 127 ~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~ 164 (266)
T 4hqo_A 127 QLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQ 164 (266)
T ss_dssp EEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence 56888899998865444556788999999999887654
No 88
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=20.67 E-value=2.3e+02 Score=21.07 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=25.6
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHHh-CCCeEEEecc
Q 029738 127 KVSLGKDPRV-SGPSLSVAVFAGLAR-AGCLVFDMGL 161 (189)
Q Consensus 127 ~VvVGrD~R~-sS~~la~ava~gL~a-~Gi~V~d~G~ 161 (189)
+|+|-+.++. +.+.++++++++|.+ .|++|..+.+
T Consensus 6 kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l 42 (188)
T 2ark_A 6 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHV 42 (188)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEh
Confidence 5666666653 467899999999998 8887654433
No 89
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=20.37 E-value=90 Score=23.15 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=24.1
Q ss_pred CeEEEEecCCC-ChHHHHHHHHHHHHhCCCeEE
Q 029738 126 VKVSLGKDPRV-SGPSLSVAVFAGLARAGCLVF 157 (189)
Q Consensus 126 ~~VvVGrD~R~-sS~~la~ava~gL~a~Gi~V~ 157 (189)
.+|+|-|.+.. +.+.+++.+++.|...|++|.
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~ 42 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVK 42 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceE
Confidence 35777788774 678899999999998887643
No 90
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=20.31 E-value=41 Score=32.55 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=39.4
Q ss_pred CCeEEEEe---cCCCChHHHH-HHHHHHHHhCCCeEEEeccCChhHHHHhhhcCCCCCCceEEEeC
Q 029738 125 DVKVSLGK---DPRVSGPSLS-VAVFAGLARAGCLVFDMGLATTPACFMSTLLPPFAYDASIMILL 186 (189)
Q Consensus 125 ~~~VvVGr---D~R~sS~~la-~ava~gL~a~Gi~V~d~G~~pTP~l~fav~~~~~~a~gGImITA 186 (189)
..+|++|. |.+.-|..+. ..++..|..+|++|+++|.--+|.-.-... .+.+++ -|.|++
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA-~EedAD-VVGLSs 665 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAA-IELKAD-AILAST 665 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHH-HHTTCS-EEEEEC
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-HHcCCC-EEEEec
Confidence 36888885 8888887644 566788999999999999754444333322 244544 344443
No 91
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=20.29 E-value=2.8e+02 Score=22.05 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHHHHhCCCeEEEeccCC
Q 029738 125 DVKVSLGKDPRVSGPSLSVAVFAGLARAGCLVFDMGLAT 163 (189)
Q Consensus 125 ~~~VvVGrD~R~sS~~la~ava~gL~a~Gi~V~d~G~~p 163 (189)
.+.|+|=-|++.....-....++.|...|+.|+-+|+-.
T Consensus 129 ~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~ 167 (281)
T 4hqf_A 129 NQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQ 167 (281)
T ss_dssp EEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345888899998765444445788899999999887644
No 92
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.27 E-value=4e+02 Score=22.60 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=52.8
Q ss_pred ccccChhHHhhhhhccccceeeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCCCCCeEEEEecCCCChHH
Q 029738 61 EVVVDEEMDRIRRLQNGSDVRGVALEGEKGRTVDLTPSAVEAIAESFGEWVIRSLENERGRPVEDVKVSLGKDPRVSGPS 140 (189)
Q Consensus 61 ~~~~~~~m~~~~~lFggsGIRGi~~~g~~~~~~~LTp~~v~~ia~A~a~~l~~~~~~~~g~~~~~~~VvVGrD~R~sS~~ 140 (189)
+-+..+.+.++-+..-..|+.|++.-|..|+...||.+.=.++.+...+.... +..|++|-=.-.+.+
T Consensus 47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-----------rvpViaGvg~~st~e- 114 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-----------RVPVLIGTGGTNARE- 114 (343)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEEEECCSSCHHH-
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEEEecCCCCHHH-
Confidence 34444445544333445789998877777766789999888887777665431 245777754322222
Q ss_pred HHHHHHHHHHhCCCeEEEe
Q 029738 141 LSVAVFAGLARAGCLVFDM 159 (189)
Q Consensus 141 la~ava~gL~a~Gi~V~d~ 159 (189)
+..+++-..+.|++.+.+
T Consensus 115 -ai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 115 -TIELSQHAQQAGADGIVV 132 (343)
T ss_dssp -HHHHHHHHHHHTCSEEEE
T ss_pred -HHHHHHHHHhcCCCEEEE
Confidence 223456667778886643
Done!