BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029739
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 154 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 212
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V GH Q E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGHWAQWEH 271
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 151 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 209
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V GH Q E
Sbjct: 210 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGHWAQWEH 268
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 269 ADEFNRLVIDFL-RHA 283
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 154 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 212
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V GH Q E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGHWAQWEH 271
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 154 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 212
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V G Q E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQWAQWEH 271
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 154 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 212
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V G Q E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGQWAQWEH 271
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 DVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 128
D +F G + LLP+V+CP LI G+KDP P
Sbjct: 174 DGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 DVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 128
D +F G + LLP+V+CP LI G+KDP P
Sbjct: 174 DGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 91 DVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP 128
D +F G + LLP+V+CP LI G+KDP P
Sbjct: 174 DGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 46 KLFYKMVA--TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGP 103
KL +K+ A + E+++ +L D S +TEEL++ + ++ + I P
Sbjct: 154 KLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWE-AIQRQPEHLKNFLISAQKAP 212
Query: 104 LPE----ELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA 158
L L ++K I WG D + P++ G + N D V G Q E
Sbjct: 213 LSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDDAR-LHVFSKCGAWAQWEH 271
Query: 159 PHLVNPLVESFVTRHA 174
N LV F+ RHA
Sbjct: 272 ADEFNRLVIDFL-RHA 286
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 54 TSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVF---LEFICYSGGPLPE-ELL 109
T E + +++ ND ++ + ++ + + +++I GG + E +
Sbjct: 159 TREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFI 218
Query: 110 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDF--IVLPNVGHCPQDEAP 159
+V+ P L+ G D P+E AY D ++D ++P+ GH E P
Sbjct: 219 RKVQVPTLVVQGKDDKVVPVET--AYKFLDLIDDSWGYIIPHCGHWAMIEHP 268
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 56 ESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVF-------LEFICYSGGPL 104
E++RN+L D S VT+EL E +QPG + + +F ++ + S
Sbjct: 150 ENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASS---- 205
Query: 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNP 164
+E + + LI G +D P+ G V GH Q E N
Sbjct: 206 -DEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNR 264
Query: 165 LVESFVTRHATP 176
LV F TP
Sbjct: 265 LVVEFFNEANTP 276
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 56 ESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVF-------LEFICYSGGPL 104
E++RN+L D S VT+EL E +QPG + + +F ++ + S
Sbjct: 150 ENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASS---- 205
Query: 105 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNP 164
+E + + LI G +D P+ G V GH Q E N
Sbjct: 206 -DEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRFNR 264
Query: 165 LVESFVTRHATP 176
LV F TP
Sbjct: 265 LVVEFFNEANTP 276
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 122 DKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173
DKD + +G+ G F VLP GH ++AP V V +F+ RH
Sbjct: 251 DKD----LTIGQMQGKFQ----MQVLPQCGHAVHEDAPDKVAEAVATFLIRH 294
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 122 DKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 173
DKD + +G+ G F VLP GH ++AP V V +F+ RH
Sbjct: 257 DKD----LTIGQMQGKFQ----MQVLPQCGHAVHEDAPDKVAEAVATFLIRH 300
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 38 LLRNTAAGKLFYK--MVATSESVRNILCQCYNDTSQVTEELVEKILQPGL-ETGAADVFL 94
L R+ AAG + + + A +E R +C+ + + + +P + T
Sbjct: 185 LDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEF 244
Query: 95 EFICYSGGPLPEELLPQVKCPVLIAWGDKD-----PWEPIELGRAYGNFDSVEDF--IVL 147
+ G + LP V PVL+ G+ D W+P D + D V
Sbjct: 245 HVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATPKTWQPF--------VDHIPDVRSHVF 296
Query: 148 PNVGHCPQDEAPHLVNPLVESFVTRH 173
P HC E P +V F+ +H
Sbjct: 297 PGTSHCTHLEKPEEFRAVVAQFLHQH 322
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 106 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPL 165
E+ + + PVLI GD+D P E A+ + +P HC D LV
Sbjct: 182 EDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHC-YDHHLELVTEA 240
Query: 166 VESFV 170
V+ F+
Sbjct: 241 VKEFM 245
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 102 GPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGNFDSVE-DFIVLPNVGHCPQ-DEA 158
G + E LLP+VKCP LI +D P G Y S E + + L N H D
Sbjct: 205 GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYHVATLDND 264
Query: 159 PHLVNPLVESFVTRHATPPASV 180
L+ +F+ +H+ A++
Sbjct: 265 KELILERSLAFIRKHSKLAAAL 286
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain
Of Chea
Length = 139
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 11 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 68
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 17 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 76
Query: 69 TSQVTEELVEKIL 81
++T +L++KI
Sbjct: 77 EIKITSDLLDKIF 89
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 102 GPLPEELLPQVKCPVLIAWGDKDPWEPIELGR-AYGNFDSVE-DFIVLPNVGHCPQ-DEA 158
G + E LLP+VKCP LI +D P G Y S E + + L N H D
Sbjct: 207 GAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYHVATLDND 266
Query: 159 PHLVNPLVESFVTRH 173
L+ +F+ +H
Sbjct: 267 KELILERSLAFIRKH 281
>pdb|1TQG|A Chain A, Chea Phosphotransferase Domain From Thermotoga Maritima
Length = 105
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 11 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 68
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 18 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 77
Query: 69 TSQVTEELVEKIL 81
++T +L++KI
Sbjct: 78 EIKITSDLLDKIF 90
>pdb|3DBA|A Chain A, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
pdb|3DBA|B Chain B, Crystal Structure Of The Cgmp-Bound Gaf A Domain From The
Photoreceptor Phosphodiesterase 6c
Length = 180
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 68 DTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPE------ELLPQVKCPVLIAWG 121
D + E++V K LQ + AAD FIC S +PE + P K +
Sbjct: 18 DEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNP 77
Query: 122 DKDPWEPIELGRAYGNFDSVEDFIVLPNV 150
DK+ P+++G A G + F +P+V
Sbjct: 78 DKETVFPLDIGIA-GWVAHTKKFFNIPDV 105
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 111 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 159
+++ L+ WG KD PI L + Y + S ++ GH E P
Sbjct: 145 KIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKP 193
>pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMX|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMZ|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1OMZ|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1ON6|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON6|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON8|A Chain A, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
pdb|1ON8|B Chain B, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
Length = 293
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 121 GDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPPASV 180
G+ D + + +G ++ N +E F P H DE + + + VTRH P+ +
Sbjct: 167 GNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGI 226
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 109 LPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGH 152
L Q+ P LI GD+D P E +A+ N S +F+V+ H
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASH 190
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 107 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV------LPNVGHCPQDEAPH 160
++ ++ CPVL+ WG+K +GR Y + + + LP GH +EAP
Sbjct: 225 DMKQKISCPVLVLWGEKGI-----IGRKYDVLATWRERAIDVSGQSLP-CGHFLPEEAPE 278
Query: 161 LVNPLVESFVTR 172
+ +F+T
Sbjct: 279 ETYQAIYNFLTH 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,747,465
Number of Sequences: 62578
Number of extensions: 237107
Number of successful extensions: 570
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 36
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)